CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033904	Trueperella pyogenes strain TP3 chromosome, complete genome	0 crisprs	csa3,cas4,WYL,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

204970 : 218876

Synechococcus_phage(22.22%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR03962.1\|204970_205267_+	co-chaperone GroES	A0A221S308	uncultured_virus	1.8e-19	47.9
AZR03963.1\|205493_205949_+	hypothetical protein	NA	NA	NA	NA
AZR03964.1\|206087_206579_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.0e-19	39.4
AZR03965.1\|206646_207354_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3FGF0	Synechococcus_phage	2.1e-39	38.9
AZR03966.1\|207386_208889_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.6e-58	35.1
AZR03967.1\|208885_209932_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FGG1	Synechococcus_phage	2.9e-61	42.7
AZR03968.1\|209928_210507_+	phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
AZR03969.1\|210503_211766_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
AZR03970.1\|211774_215524_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	2.3e-31	25.1
AZR03971.1\|215617_215863_+	hypothetical protein	NA	NA	NA	NA
AZR03972.1\|216003_216300_-	WhiB family transcriptional regulator	A0A2P1CGA4	Mycobacterium_phage	7.9e-12	45.8
AZR03973.1\|216501_218004_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	9.0e-96	41.0
AZR03974.1\|218153_218876_-	DNA polymerase III subunit epsilon	Q1WDI5	Streptomyces_phage	1.2e-48	45.7

DBSCAN-SWA_2

232511 : 300055

Streptococcus_phage(33.33%)

transposase,integrase

attL 221168:221184|attR 285856:285872

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
221168:221184	attL	NA	NA	NA	NA
AZR03987.1\|232511_233585_+\|integrase	site-specific integrase	Q8SBN2	Clostridium_phage	1.6e-83	45.2
AZR03988.1\|234038_235172_+	hypothetical protein	NA	NA	NA	NA
AZR03989.1\|235358_238019_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
AZR03990.1\|238024_238249_-	hypothetical protein	NA	NA	NA	NA
AZR03991.1\|238351_239257_-	methyltransferase domain-containing protein	NA	NA	NA	NA
AZR03992.1\|239723_239909_+	conjugal transfer protein	D0R0F6	Streptococcus_phage	6.2e-07	43.1
AZR03993.1\|239925_240909_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA
AZR03994.1\|241019_241859_-	hypothetical protein	NA	NA	NA	NA
AZR03995.1\|241867_243325_+\|transposase	IS21 family transposase	NA	NA	NA	NA
AZR03996.1\|243324_244077_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.0e-31	38.1
AZR03997.1\|244548_245118_+	hypothetical protein	NA	NA	NA	NA
AZR03998.1\|245390_247553_+	AAA family ATPase	K4I1H4	Acidithiobacillus_phage	8.3e-26	30.0
AZR03999.1\|247639_249559_-	TetM/TetW/TetO/TetS family tetracycline resistance ribosomal protection protein	E4ZFJ7	Streptococcus_phage	0.0e+00	97.3
AZR04000.1\|250233_250626_-	XRE family transcriptional regulator	NA	NA	NA	NA
AZR04001.1\|250749_251457_-	class B sortase	NA	NA	NA	NA
AZR05677.1\|251506_254605_-	hypothetical protein	NA	NA	NA	NA
AZR04002.1\|254615_255092_-	DNA gyrase	NA	NA	NA	NA
AZR04003.1\|255208_256216_-	conjugal transfer protein TrbL	NA	NA	NA	NA
AZR04004.1\|256212_256911_-	hypothetical protein	NA	NA	NA	NA
AZR04005.1\|256928_258515_-	hydrolase Nlp/P60	A0A1S5SEZ8	Streptococcus_phage	1.9e-11	36.4
AZR04006.1\|258511_260992_-	DUF87 domain-containing protein	NA	NA	NA	NA
AZR04007.1\|260969_261380_-	PrgI family protein	NA	NA	NA	NA
AZR04008.1\|261389_261605_-	hypothetical protein	NA	NA	NA	NA
AZR04009.1\|261779_263621_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
AZR04010.1\|263617_264166_-	hypothetical protein	NA	NA	NA	NA
AZR04011.1\|264196_264721_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
AZR04012.1\|264890_265724_-	ATP-binding protein	A0A2K9V3L7	Faecalibacterium_phage	8.8e-08	33.6
AZR04013.1\|265739_266225_-	hypothetical protein	NA	NA	NA	NA
AZR04014.1\|266232_266448_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AZR04015.1\|266570_266816_-	DNA-binding protein	NA	NA	NA	NA
AZR04016.1\|267446_269786_+	hypothetical protein	NA	NA	NA	NA
AZR04017.1\|270351_270972_-	lipoate--protein ligase family protein	NA	NA	NA	NA
AZR04018.1\|270971_271175_-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
AZR04019.1\|271183_271519_-	thioredoxin family protein	NA	NA	NA	NA
AZR04020.1\|271567_272569_-	permease	NA	NA	NA	NA
AZR05678.1\|272699_272963_+	transcriptional regulator	NA	NA	NA	NA
AZR04021.1\|273556_273811_-	hypothetical protein	NA	NA	NA	NA
AZR05679.1\|275163_275382_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
AZR04022.1\|275378_275765_+	Fic family protein	D0R0D2	Streptococcus_phage	7.4e-18	34.7
AZR04023.1\|276316_276532_+	hypothetical protein	NA	NA	NA	NA
AZR04024.1\|276701_279308_+	DNA helicase PcrA	A7KV33	Bacillus_phage	8.0e-124	40.1
AZR04025.1\|279304_281281_+	acyltransferase	B5WZU0	Pseudomonas_phage	3.4e-34	32.6
AZR04026.1\|281407_282583_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
AZR04027.1\|282585_283503_+	succinate--CoA ligase subunit alpha	NA	NA	NA	NA
AZR04028.1\|283575_283950_+	N-acetyltransferase	NA	NA	NA	NA
AZR04029.1\|284013_285285_+	hypothetical protein	NA	NA	NA	NA
AZR04030.1\|285326_286850_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	Q58MG4	Prochlorococcus_phage	4.0e-51	40.3
285856:285872	attR	NA	NA	NA	NA
AZR04031.1\|287043_287325_+	hypothetical protein	NA	NA	NA	NA
AZR05680.1\|287343_289548_-	6-phosphofructokinase	NA	NA	NA	NA
AZR04032.1\|289711_291364_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
AZR04033.1\|291518_291770_-	hypothetical protein	NA	NA	NA	NA
AZR04034.1\|291750_292242_-	hypothetical protein	NA	NA	NA	NA
AZR04035.1\|294228_295851_+	alpha/beta hydrolase	NA	NA	NA	NA
AZR04036.1\|296231_296876_-\|transposase	transposase	NA	NA	NA	NA
AZR04037.1\|297245_298337_-\|transposase	transposase	NA	NA	NA	NA
AZR04038.1\|298387_298624_-	hypothetical protein	NA	NA	NA	NA
AZR04039.1\|298648_298918_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	1.4e-07	41.7
AZR04040.1\|298969_300055_-\|transposase	IS30 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1542352 : 1640071

Erysipelothrix_phage(41.67%)

portal,head,transposase,terminase,capsid,holin,protease,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR04994.1\|1542352_1544959_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A1S6UBG5	Serratia_phage	1.1e-133	41.1
AZR04995.1\|1545075_1545519_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
AZR04996.1\|1545518_1545848_-	DUF2516 family protein	NA	NA	NA	NA
AZR04997.1\|1545856_1546936_-	folate-binding protein	NA	NA	NA	NA
AZR04998.1\|1546951_1547563_-	FABP family protein	NA	NA	NA	NA
AZR04999.1\|1547572_1548403_-	hypothetical protein	NA	NA	NA	NA
AZR05000.1\|1548846_1551129_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
AZR05001.1\|1551260_1552187_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AZR05002.1\|1552986_1554516_-	alanine:cation symporter family protein	NA	NA	NA	NA
AZR05003.1\|1554673_1555339_+	DUF47 family protein	NA	NA	NA	NA
AZR05004.1\|1555342_1556347_+	inorganic phosphate transporter	NA	NA	NA	NA
AZR05005.1\|1556440_1557217_-	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-16	32.0
AZR05006.1\|1557246_1558128_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
AZR05771.1\|1558138_1559122_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
AZR05007.1\|1559235_1560354_-	phosphate ABC transporter substrate-binding protein PstS	NA	NA	NA	NA
AZR05772.1\|1560440_1561382_-	NUDIX hydrolase	NA	NA	NA	NA
AZR05773.1\|1561409_1563668_-	RNA degradosome polyphosphate kinase	NA	NA	NA	NA
AZR05008.1\|1563932_1564547_-	hypothetical protein	NA	NA	NA	NA
AZR05774.1\|1565438_1566830_+	DNA cytosine methyltransferase	F2Y148	Organic_Lake_phycodnavirus	1.0e-45	31.2
AZR05009.1\|1566909_1567575_+	SinI family restriction endonuclease	NA	NA	NA	NA
AZR05010.1\|1567637_1569479_-	hypothetical protein	NA	NA	NA	NA
AZR05011.1\|1569468_1569891_-	hypothetical protein	NA	NA	NA	NA
AZR05012.1\|1569913_1570957_-	hypothetical protein	NA	NA	NA	NA
AZR05013.1\|1571403_1571907_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
AZR05014.1\|1571977_1572241_+	hypothetical protein	NA	NA	NA	NA
AZR05015.1\|1572243_1572660_+	hypothetical protein	NA	NA	NA	NA
AZR05016.1\|1572656_1573820_+	DUF2800 domain-containing protein	A0A1W6JQ97	Corynebacterium_phage	1.8e-112	55.6
AZR05017.1\|1573822_1574377_+	DUF2815 family protein	A0A2K5B2A9	Erysipelothrix_phage	1.2e-42	55.5
AZR05018.1\|1574470_1576411_+	DNA polymerase	A0A2K5B2B0	Erysipelothrix_phage	1.4e-197	52.5
AZR05019.1\|1576640_1577066_+	DUF4406 domain-containing protein	A0A2K5B270	Erysipelothrix_phage	4.1e-30	45.6
AZR05020.1\|1577062_1579318_+	DNA primase	M1NSF0	Streptococcus_phage	6.1e-189	47.0
AZR05021.1\|1579447_1579723_+	VRR-NUC domain-containing protein	W8CQF0	Croceibacter_phage	6.0e-14	41.6
AZR05022.1\|1579706_1580192_+	HNH endonuclease	A0A2I7QIM4	Bacillus_phage	2.2e-19	52.5
AZR05023.1\|1580181_1581543_+	DEAD/DEAH box helicase	A0A1L6BZE2	Pasteurella_phage	6.4e-157	60.2
AZR05024.1\|1581539_1582010_+	hypothetical protein	NA	NA	NA	NA
AZR05025.1\|1582177_1582552_+	HNH endonuclease	A0A2K5B276	Erysipelothrix_phage	4.9e-35	54.6
AZR05026.1\|1582801_1583386_+\|terminase	terminase	A0A2K5B277	Erysipelothrix_phage	1.7e-45	48.7
AZR05027.1\|1583493_1584672_+	methionine adenosyltransferase	A0A2K5B278	Erysipelothrix_phage	3.3e-93	49.9
AZR05028.1\|1584643_1585885_+	DNA modification methylase	A0A2I4R670	Erysipelothrix_phage	1.3e-140	59.6
AZR05029.1\|1585881_1587183_+	DNA cytosine methyltransferase	A0A1P8DJM9	Virus_Rctr41k	2.0e-38	32.5
AZR05030.1\|1587273_1587987_+	hypothetical protein	NA	NA	NA	NA
AZR05031.1\|1587987_1588203_+	DUF4314 domain-containing protein	NA	NA	NA	NA
AZR05032.1\|1588265_1588514_+	hypothetical protein	NA	NA	NA	NA
AZR05033.1\|1588538_1588850_+	hypothetical protein	NA	NA	NA	NA
AZR05034.1\|1588959_1590564_+\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	4.3e-237	75.2
AZR05035.1\|1590535_1591144_+	N-acetyltransferase	D0R097	Streptococcus_phage	1.7e-29	39.5
AZR05036.1\|1591223_1592486_+\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	1.2e-170	73.6
AZR05037.1\|1592482_1593244_+\|protease	Clp protease ClpP	Q6DMU1	Streptococcus_phage	8.1e-61	58.7
AZR05038.1\|1593263_1594478_+\|capsid	phage major capsid protein	A0A2I4R671	Erysipelothrix_phage	2.3e-118	54.9
AZR05039.1\|1594509_1594824_+\|head,tail	phage gp6-like head-tail connector protein	A0A2K5B290	Erysipelothrix_phage	2.6e-29	59.4
AZR05775.1\|1594854_1595181_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AZR05776.1\|1595173_1595608_+	HK97 gp10 family phage protein	NA	NA	NA	NA
AZR05040.1\|1595604_1595955_+	hypothetical protein	A0A2K5B293	Erysipelothrix_phage	1.6e-16	38.1
AZR05041.1\|1595940_1596453_-	hypothetical protein	NA	NA	NA	NA
AZR05042.1\|1596636_1596996_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AZR05043.1\|1596992_1597643_+	hypothetical protein	NA	NA	NA	NA
AZR05044.1\|1597813_1598239_-	hypothetical protein	NA	NA	NA	NA
AZR05045.1\|1598412_1599024_+\|tail	phage tail protein	A0A2K5B294	Erysipelothrix_phage	7.7e-78	73.7
AZR05046.1\|1599023_1599410_+	hypothetical protein	A0A2K5B295	Erysipelothrix_phage	6.0e-28	52.8
AZR05047.1\|1599892_1600657_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	7.3e-86	65.7
AZR05777.1\|1601376_1602600_-	tetracycline efflux MFS transporter Tet(33)	NA	NA	NA	NA
AZR05048.1\|1602638_1603208_+	TetR family transcriptional regulator	NA	NA	NA	NA
AZR05049.1\|1603570_1603756_+	hypothetical protein	NA	NA	NA	NA
AZR05778.1\|1603846_1604611_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	7.3e-86	65.7
AZR05050.1\|1604643_1605069_-	hypothetical protein	NA	NA	NA	NA
AZR05051.1\|1605122_1607771_+\|tail	phage tail protein	A0A2K9V3J7	Faecalibacterium_phage	2.1e-39	39.7
AZR05052.1\|1607770_1608466_+	hypothetical protein	NA	NA	NA	NA
AZR05053.1\|1608489_1611366_+	peptidase	A0A2H4JFY7	uncultured_Caudovirales_phage	1.9e-62	37.2
AZR05054.1\|1611386_1611812_+	DUF1617 family protein	K4I4C5	Lactobacillus_phage	2.6e-08	29.0
AZR05055.1\|1612073_1612511_+\|holin	holin	A0A2K5B2A2	Erysipelothrix_phage	1.2e-37	60.3
AZR05056.1\|1612503_1613280_+	N-acetylmuramoyl-L-alanine amidase	A0A221J6T7	Arthrobacter_phage	7.1e-28	52.6
AZR05057.1\|1613436_1613649_-	hypothetical protein	NA	NA	NA	NA
AZR05058.1\|1614064_1615306_+	recombinase family protein	Q6DMS5	Streptococcus_phage	9.5e-59	38.4
AZR05059.1\|1615305_1616853_+	recombinase family protein	Q6DMS5	Streptococcus_phage	3.6e-124	46.3
AZR05060.1\|1616888_1617605_-	hypothetical protein	NA	NA	NA	NA
AZR05061.1\|1617601_1618048_-	hypothetical protein	NA	NA	NA	NA
AZR05062.1\|1618049_1618133_+	erythromycin resistance leader peptide	NA	NA	NA	NA
AZR05063.1\|1618232_1619087_+	23S ribosomal RNA methyltransferase Erm	E4ZFQ0	Streptococcus_phage	7.1e-13	27.6
AZR05064.1\|1620130_1621081_-	EamA family transporter	NA	NA	NA	NA
AZR05065.1\|1621073_1621889_-	hypothetical protein	NA	NA	NA	NA
AZR05066.1\|1621869_1622274_-	peptide-methionine (R)-S-oxide reductase	NA	NA	NA	NA
AZR05067.1\|1622270_1623797_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
AZR05068.1\|1624470_1626315_+	virulence factor MviN	NA	NA	NA	NA
AZR05069.1\|1626372_1627323_+	L-lactate dehydrogenase	NA	NA	NA	NA
AZR05070.1\|1627413_1628319_-	class C sortase	NA	NA	NA	NA
AZR05779.1\|1628395_1629787_-	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA
AZR05071.1\|1629849_1632519_-	VWA domain-containing protein	NA	NA	NA	NA
AZR05072.1\|1632668_1636142_-	Cna B-type domain-containing protein	NA	NA	NA	NA
AZR05073.1\|1636456_1637365_+	hypothetical protein	NA	NA	NA	NA
AZR05074.1\|1637392_1639438_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	6.0e-18	27.7
AZR05075.1\|1639483_1640071_+\|holin	phage holin family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage