CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033688	Mycobacterium avium subsp. paratuberculosis strain Telford chromosome, complete genome	1 crisprs	cas4,WYL,csa3,cas3,DinG,DEDDh	0	2	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP033688_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033688_1

422196-422286

Orphan

Consensus_repeat	Method
CCGCCGCGCTGCGGCGGGCATCGTCGCCGGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033688_1

>merge|CP033688|1|422196-422286|CRISPRCasFinder
CCGCCGCGCTGCGGCGGGCATCGTCGCCGGGCTGGGTGGGATGGCCCGCCTCCTCCTCCCGCCGCGCTGCGGCGGGCATCGTCGCCGGGCT

>CP033688|1|1|422196-422286|CRISPRCasFinder
CCGCCGCGCTGCGGCGGGCATCGTCGCCGGGCT	GGGTGGGATGGCCCGCCTCCTCCTC
CCGCCGCGCTGCGGCGGGCATCGTCGCCGGGCT

Protein	Signature genes	Signature genes Name	Protein_function
CP033688.1\|AZP79891.1\|417661_418477_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|236183
CP033688.1\|AZP83610.1\|414456_415287_-\|acid-phosphatase	unknown	unknown	gnl\|CDD\|309350
CP033688.1\|AZP79900.1\|427616_428753_+\|PPE-family-protein	unknown	unknown	gnl\|CDD\|366325
CP033688.1\|AZP79897.1\|425521_426394_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211332
CP033688.1\|AZP83612.1\|429996_430209_-\|hypothetical-protein	unknown	unknown	unknown
CP033688.1\|AZP79899.1\|427097_427385_+\|hypothetical-protein	unknown	unknown	unknown
CP033688.1\|AZP79902.1\|430294_430648_-\|DUF732-domain-containing-protein	unknown	unknown	gnl\|CDD\|368380
CP033688.1\|AZP79892.1\|419277_420480_+\|M20-family-peptidase	unknown	unknown	gnl\|CDD\|349921
CP033688.1\|AZP79893.1\|420476_421655_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349936
CP033688.1\|AZP79890.1\|416076_417657_-\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
CP033688.1\|AZP79889.1\|415451_416225_+\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
CP033688.1\|AZP79894.1\|421677_422145_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|372719
CP033688.1\|AZP79887.1\|412101_413085_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|184242
CP033688.1\|AZP79898.1\|426433_427030_+\|diguanylate-cyclase/phosphodiesterase	unknown	unknown	unknown
CP033688.1\|AZP79895.1\|422298_423714_+\|NAD(P)H-quinone-dehydrogenase	unknown	unknown	gnl\|CDD\|236112
CP033688.1\|AZP83611.1\|418575_419232_+\|cutinase-family-protein	unknown	unknown	gnl\|CDD\|366455
CP033688.1\|AZP79901.1\|428862_429921_+\|PPE-family-protein	unknown	unknown	gnl\|CDD\|366325
CP033688.1\|AZP79888.1\|413117_414431_-\|primosomal-protein	unknown	unknown	gnl\|CDD\|215601
CP033688.1\|AZP79896.1\|423770_425525_+\|glycerol-3-phosphate-dehydrogenase/oxidase	unknown	unknown	gnl\|CDD\|223651
CP033688.1\|AZP79903.1\|430839_431757_+\|esterase	unknown	unknown	gnl\|CDD\|226040

Protein	Function_ID	Function_description	E-value
CP033688.1\|AZP79891.1\|417661_418477_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|236183	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.	1.59336e-131
CP033688.1\|AZP83610.1\|414456_415287_-\|acid-phosphatase	gnl\|CDD\|309350	pfam04185, Phosphoesterase, Phosphoesterase family. This family includes both bacterial phospholipase C enzymes EC:3.1.4.3, but also eukaryotic acid phosphatases EC:3.1.3.2.	7.45765e-42
CP033688.1\|AZP79900.1\|427616_428753_+\|PPE-family-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	2.96273e-51
CP033688.1\|AZP79897.1\|425521_426394_+\|pseudouridine-synthase	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	4.53932e-117
CP033688.1\|AZP79902.1\|430294_430648_-\|DUF732-domain-containing-protein	gnl\|CDD\|368380	pfam05305, DUF732, Protein of unknown function (DUF732). This family consists of several uncharacterized Mycobacterium tuberculosis and leprae proteins of unknown function.	7.11334e-25
CP033688.1\|AZP79892.1\|419277_420480_+\|M20-family-peptidase	gnl\|CDD\|349921	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily. Peptidase M20 family, aminoacylase 1-like protein 2 (ACY1L2; amidohydrolase)-like subfamily. This group contains many uncharacterized proteins predicted as amidohydrolases, including gene products of abgA and abgB that catalyze the cleavage of p-aminobenzoyl-glutamate, a folate catabolite in Escherichia coli, to p-aminobenzoate and glutamate. p-Aminobenzoyl-glutamate utilization is catalyzed by the abg region gene product, AbgT. This subfamily includes Staphylococcus aureus antibiotic resistance factor HmrA that has been shown to participate in methicillin resistance mechanisms in vivo in the presence of beta-lactams. Aminoacylase 1 (ACY1) proteins are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	2.70707e-153
CP033688.1\|AZP79893.1\|420476_421655_+\|amidohydrolase	gnl\|CDD\|349936	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of uncharacterized bacterial proteins predicted as putative amidohydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
CP033688.1\|AZP79890.1\|416076_417657_-\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
CP033688.1\|AZP79889.1\|415451_416225_+\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	2.5881e-108
CP033688.1\|AZP79894.1\|421677_422145_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|372719	pfam13772, AIG2_2, AIG2-like family. This family is found in bacteria and metazoa.	4.6113e-33
CP033688.1\|AZP79887.1\|412101_413085_-\|VWA-domain-containing-protein	gnl\|CDD\|184242	PRK13685, PRK13685, hypothetical protein; Provisional.	1.49442e-179
CP033688.1\|AZP79903.1\|430839_431757_+\|esterase	gnl\|CDD\|226040	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism].	8.75232e-96
CP033688.1\|AZP79895.1\|422298_423714_+\|NAD(P)H-quinone-dehydrogenase	gnl\|CDD\|236112	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.	0
CP033688.1\|AZP83611.1\|418575_419232_+\|cutinase-family-protein	gnl\|CDD\|366455	pfam01083, Cutinase, Cutinase.	6.47823e-37
CP033688.1\|AZP79901.1\|428862_429921_+\|PPE-family-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	1.49331e-52
CP033688.1\|AZP79888.1\|413117_414431_-\|primosomal-protein	gnl\|CDD\|215601	PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional.	0.000495706
CP033688.1\|AZP79896.1\|423770_425525_+\|glycerol-3-phosphate-dehydrogenase/oxidase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	0

>CP033688.1|AZP79894.1|421677_422145_-|gamma-glutamylcyclotransferase
MPLYAAYGSNMDPEQMLKRAPHSPMAGTGWLHGWRLTFGGEDIGWEGALATVVEDPGSKVFVVLYDMTPADEKNLDRWEGSEFGVHKKIRCRVDRISSDTTTDPVLAWLYILDAWEGGLPSARYLGVMADAAEIAGAPADYVHDLRTRPARNIGP
>CP033688.1|AZP79893.1|420476_421655_+|amidohydrolase
MSLADAATSWLAAHNQDLIEWRRHIHRYPELGRQEYATTQFVAERLAEAGLNPKVLPGGTGLTCDLGPEHEPRIALRADMDALPMAERTGAPYASTMPNVAHACGHDAHTAILLGTALVLASVPELPVGVRLIFQAAEELMPGGAIDAIAAGAITGVSRIFALHCDPRLEVGQIAVRHGPITSAADQIEITLYSPGGHTSRPHLTADLVYGLGTLITGLPGVLSRRIDPRNGTVLVWGAVNAGVAANAIPQTGVLAGTVRTASRQTWVGLEEVIRETVSGLLAPLGIEHTLQYRRGVPPVVNEDVSTRILTHAIEALGPDALADTRQSGGGEDFSWYLEEIPGAMARLGVWPGVGPQLDLHQPTFNLDERALAIGVRVMANIVEQSALFQVF
>CP033688.1|AZP79892.1|419277_420480_+|M20-family-peptidase
MPPVGSDSPLDSVEDVVRRRGADLVELSHAIHAEPELAFAEHRSCAKAQALVAERGFEITAAAGGLDTAFRADFGSGQLTIGVCAEYDALPEIGHACGHNIIAASAVGTALALVEVADDLGLRVALVGTPAEEAGGGKALLLKAGVFDDISAAVMLHPGPADIAAARSLALSEAIVRYRGKESHAAVAPHLGVNALDAVTVAQVAVGLLRQQLAPGQLVHGIVTDGGQAVNVIPGHASLQYAMRAVESDSLRELEGRMYACFAAGAMAAGCEYEIDNPAPAYDELKPDAWLANIFREEMCRLGRQPVAPEYEAALPMGSTDMGNVTQALPGIHPVVGVESGGAMVHQRAFADAAAGPSADRAVIEGAIMLARTVVALAQTPAERDRVLAAHERRRGGAHP
>CP033688.1|AZP83611.1|418575_419232_+|cutinase-family-protein
MVGPAIGTVVAVALSVVAITCGPAPRAAADGCPDVQLIFARGTAEPPGLGAVGDALFAALQPALGNRNVDAYAVNYPASYNFLTTADGANDARDHIAEMVDRCPSTRLVLGGFSQGAAAVSMLAGVPPVGQRIGNFGSAPPLDPGLASKIAAVAVFGNPGNRFNTPLSTTGAFAGRAIDLCSDGDPVCVVGGRDRDAHHVYEDPPYPAQAAGFIAGRV
>CP033688.1|AZP79891.1|417661_418477_-|purine-nucleoside-phosphorylase
MAETPSNPGELARQAAAVIGERTGVAEHDVAIVLGSGWSPAVAALGTPTAVLPQAELPGFRPPTAVGHTGELVSMRIGEHRVLVLVGRIHAYEGHDLCHVVHPVRAACAAGVRAVVLTNAAGGLRPDLAVGEPVLISDHLNLTGRSPLVGPQFVDLTDAYSPRLRELARQADPTLAEGVYAGLPGPHYETPAEIRMLRTLGADLIGMSTVHETIAARAAGAEVLGVSLVTNLAAGISGEPLSHTEVLAAGAASATRMGALLALILCQLPRF
>CP033688.1|AZP79890.1|416076_417657_-|phospho-sugar-mutase
MTPEEWIAHDPDPRTAAELAACGAAELAARFARPLRFGTAGLRGPVRAGPDAMNVAVVSRASWALAQVLKRRGPAGARVIVGRDARHGSAVFATVAAEVLAAQGFSVLLLPGPAPTPVVAFAVRHTGAAAGVQITASHNPPTDNGYKVYDGGGIQIVSPTDHQIEAAMADAPPADEIRRTPVPPAHTDLVQRYIERAAGVRRGTGSVRVALTALHGVGGTVAVDALHRAGFGRIHTVASQFAPDPDFPTVAFPNPEEPGATDALLTLAADVDADVAIALDPDADRCAVGIPDASGWRMLSGDETGWLLGDYLLSQPQRADRPVVASTVVSSRMLSAIAARHGAVHVETLTGFKWLARADAEVPGGTLVYAYEEAIGHCVDPAAVRDKDGISAAVLVCDLVAGLIARGGSVSGRLDELARRHGVHDVAAVSRRVGTDGAAELMRRLRTSPPETLAGFGVALTDITDALIFTGGDDDTSVRLVVRPSGTEPKVKCYLEIRCAPSDDLASSRRRARALRELLVATVRSW
>CP033688.1|AZP79889.1|415451_416225_+|uracil-phosphoribosyltransferase
MDVCVIDHPLAAARLTVLRDERTDTAGFRAALRDLTLMLVYEASRDAPRKSVRIRTPVAAAAGTRLVNPPLLVPVLRAGLGMVDPAQAALPEAEVGFVGVARDEQTHRPVPYLAALPDKLAGRPVMVLDPMLATGGSMAHTLGLLQRRGATDITVLCVVAAPEGLAAVGETAPDARVFTAAVDKGLNKAAYIVPGLGDAGDRQFGPNLFTSSAPSRPEAPAGRGRAAAKTPGRRSARSESPSSTSPSARSRKAAPPA
>CP033688.1|AZP83610.1|414456_415287_-|acid-phosphatase
MAAVALAASPLTPRTNLAAAAIPQPSHIVIVVEENRSESGIIGNKSAPFITALAASGANMTQSFAETHPSEPNYLALFAGNTFGVTKDLCPVNAGAAPNLGSELLAAGYTFVGYAEGLPSPGSPVCSAGKYARKHVPWANFTNVPAASSLPFSAFPMGNYASLPTVSFVIPNNDNNMHDGSIAQADSWLNRQLSGYANWALANNSLLIVTFDEDDNSNVGASRNQIPTVFYGAHVRPGNYAEQINHYNVLATLEQMYGLPKTGYAAGAAPITDIWG
>CP033688.1|AZP79888.1|413117_414431_-|primosomal-protein
MAADLVPIRLSLSAGDRYTVWAPRWRDSGDEWEAFLGKDEDLYVFSSVADLVAFVRSDEDNDLTDHPAWTRLRTARAHKFEPAKDKQFDLVAVEELVSEKPTEESVTALAGVLAIVSSIGSVCELAAVSKFFNGNPALGTVSGGIEHFTGKAGAKRWHAIAEIIARGWDDVLGAIDDIATTPEVDEALSAKAEDELAEERDDEETDEADEAAEAPADATEPDEEALEADEADGEPDDDADETETRAAGDTVVLGGDKDFWLQVGIDPIRIITSSGTFYTLRCYLDDQPIFLGRNGRISVFTSERALARYLADEHDHDLADLSTYDDIRTAATDGSLEVEITDDNIYVLSGLADDLADGPDAVDRDQLELAVEVLRDIGDYSEDSTVDKALEPGRPLGKLVADVLEPGSVAKPSPPYAAAVREWEKLEQFVDGRLRRE
>CP033688.1|AZP79887.1|412101_413085_-|VWA-domain-containing-protein
MSLPGIGPLPLYGFQRPGMLLFGLVPLALLALYLVVQARRRRRLHRYTDAPVAQSPWRHLPIAVSLLSLVLLTIALATPTHDMRIPRNRAVIMLVIDMSQSMRATDVEPNRLKAAEQAASQFASQLTPGINLGLVGFAGTPYLLVPPTPQHQATIDALKKLDFADSTATGEAIFTALHAISATAVAGGDTPPPARIVLLSDGGENKPSNPSDPHDGVYTAARLAKDEGVPISTITFGTKGGEIEMDGQKVAVPVSTDQMKMVAKLSGGQSYTATNLGELQKSYNAIENEIGYRTVPGPGSAGWLRLGVLTALIATALALLINRRLPT
>CP033688.1|AZP79895.1|422298_423714_+|NAD(P)H-quinone-dehydrogenase
MVTRIVILGGGPAGYEAALVAASSHPDSTHVTVIDSEGIGGAAVLDDCVPSKTFIASTWLRTELRRAPRLGFEIDIDDAKISLPQIHARVKQLATEQSADITEQLLGVGVHVVAGRGELIDPTPGLARHRIKATAPDGSSSEYEADVVLIATGASPRILPSAQPDGERILTWRQLYNLDALPDHLIVVGSGVTGAEFVHAYTELGVPVTVVASRDRVLPYEDADAALVLEEAFSERGVQLVKNARAQSVTRTPDGVLVTLTDGRTVAGSHALMTIGSVPNTAGLGLERVGIELGRGGYLMVDRVSRTSVPGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAAVGVPQTMIDDGSVSARTIMLPLRTNARAKMSGLRQGFVKVFCRKSTGVVIGGVVVAPIASELIVPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLMAHDDLD
>CP033688.1|AZP79896.1|423770_425525_+|glycerol-3-phosphate-dehydrogenase/oxidase
MSDPIHALGEPGSPASALGPRQRAAAWDRLGAEQFDVVVIGGGVVGSGCALDAATRGLKVALVEARDFASGTSSRSSKMFHGGLRYLEQLEFGLVREALYERELSLTTLAPHLVKPMPFLFPLTNRLWERPYIAAGIFLYDRLGGAKSVPAQKHLTRAGALRLCPGLKRSALIGGIRYYDTIVDDARHTLTVARTAAHYGVVVRNSTQVVALLREGDRVTGVRVRDSEDGSVTEVRGHVVVNATGVWTDEIQALSKQRGRFQVRASKGVHVVVPRDRIVSDVAIILRTEKSVMFVIPWGSHWIIGTTDTDWDLDLAHPAATKADIDYILSTVNTVLAIPLTHADIDGVYAGLRPLLAGESEETSKLSREHAVAVPAPGLVAIAGGKYTTYRVMAADAIDAAAQFIPARVAPSITEKVSLLGADGYFALINQAEHVAQLRGLHPYRVRHLLDRYGSLIGDVLALAADRPDLLNPITEAPGYLRVEALYAVTAEGALHLEDILARRMRISIEYSHRGVDCAREVADVVAPVLGWTAGDVEREVANYTARVQAEILSQAQPDDVSADELRASAPEARAEILEPVPLN
>CP033688.1|AZP79897.1|425521_426394_+|pseudouridine-synthase
MRPAPLPVRDGLGPARVRLRGGPVLAELTARFGAAARAKVLAAEVVTADGAVVDEATVLPAGASVYLYRELPDEVVVPFDLPVLHRDDDIVVVDKPHFLATMPRGRHVAQTALVRLRRELGLPELSPAHRLDRLTAGVLLFTARREVRGAYQTLFSRGLVDKTYLARAAVDPALVFPRVLAGRIVKHRGRMQAVCEPGPPNALTEVELLSPDGLYRLRPRTGRTHQLRLQMASLGIPIIGDPLYPNIIDVPADDFSTPLQLLAQRIEFDDPRTGARRVFVNRRTLDDPGP
>CP033688.1|AZP79898.1|426433_427030_+|diguanylate-cyclase/phosphodiesterase
MRRQLRIPERANDAETALLRYLLYGLLPAWFIPALLDWNQHRRSRIEITSGTRESLIHLLMMAEVGVPITLVLLCEINPLVLSTILASIAAHEATALWDVTAAERSGRRVTTWEQHVHSFLESLPIMAASALGCLHWREVRELVRGARSRDAWRLRWKQNPLPGGYLAAVAAAVAAAIVVPYGEELYRCVTKTDRTLR
>CP033688.1|AZP79899.1|427097_427385_+|hypothetical-protein
MRHGTVAAAAALLLAAGVIAAAPPARAGCQYGGPVLSKCDGPVQPDGTWQRCVAVTRLIPNGASSYLVPDGHCEQLGPDQHPADLAFADPPGHID
>CP033688.1|AZP79900.1|427616_428753_+|PPE-family-protein
MDLFAPPEVTSTLIHTGPGAGSLIEAAAAWQRVAVELENSVSSYASTLSSLIESWDGPSAMAMLQSVQPYLLWLRETAQQSAQLANSAEAAATAFGTVRSTVVHPSVVSANRTRLAQLLATNRFGTNTAAIAETENEYQTMWANNSAALSRYQAASSQATSPLTQFNSPLAVTDPGGTANQQAAVMKASVDSSGSSVGSVLNDLNMPGGFDPNAGWFNYFSTWGNQFISSGFPINLLGVWAQLATAQGVASVGGDIGSGLSEGLGATTASLANAIKGIGAGAVAPSGAMGVGVSLGKLTAPPAVVGLLPGTQTGVQLASAASPLPAAESGFPLMPMMVPPPTTSAGTGWRKRKQQKYEDVAYGREVKGKVMPRNPSAG
>CP033688.1|AZP79901.1|428862_429921_+|PPE-family-protein
MDFGILPPEVTSALIHAGPGAWSWIEAAGVWQQLSMELEQSASSYTAELAALSTTWQGPSALAMTRALEPYVDWLRITAQQCQEIATSVQTATAAFELTHWTVVHPSLVAANRARLAMLLATNFFGINYPAIAETEAEYHAMWVNNSAAMYRYAATSATAVRLPRFTEPPQVANPSGVSTQAAMVPATNAADSGTQTGVAGTLQAASTAFFDPNTGWFKYWSTWGNQFLAASGFPINLIGVLAQLQTASGFQSLGAAGSSLAPRAALGVGISLGNLTMPPATVGMLGSQAPVQLASAASPLATGAGQPPMLPMTPMRPGGNGTRRRNGRDYDDIEYGAELPGTVMQRPPSAG
>CP033688.1|AZP83612.1|429996_430209_-|hypothetical-protein
MIPRLLAGMACVAIALGPPVGAAAPAGADPGPFAHLNCACDQPDPPGGATPRDAMNQGIRQGLSAPPAAE
>CP033688.1|AZP79902.1|430294_430648_-|DUF732-domain-containing-protein
MTSTQIRKRARPRSLVVAGLLPLAGLLGVITTPAHATSADDAFLAALKAKGINYESPDAAVNSGHTVCHELDMGQTPEQVANNVLSSSTLDSYHAGYFVGVSIKAYCPKYAAAAAGS
>CP033688.1|AZP79903.1|430839_431757_+|esterase
MAYARWLWLAVLAVCVVGCGVRHVSAASARDISGTFRSGGMDRTYMLHVPAGDPVGLVLSLHGGGGTGIAQRGLTGFDAVADAHNLLVVYPDGYEKSWADGRGASPADRHHVDDVAFLVGLVTKLQNDYRVAPGHVFVTGMSNGGFMSNRLACDRADVFAAVAPVAGTLGVGVACNPSRPVSVWAAHGTADPLVPFKGGAVRGRGGLSHAVSAEAMVDKWRKADGCQGDPSMELLPDARDGTVVHRFDSTSCAASTEVVFYRIDKGGHTWPGGKQYLPAAVIGPTTHTLDGSEAIAEFFLAHARD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP033688_1	1.1\|422229\|25\|CP033688\|CRISPRCasFinder	422229-422253	25	CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	131283-131307	4	0.84
CP033688_2	2.1\|1311790\|30\|CP033688\|CRISPRCasFinder	1311790-1311819	30	NZ_CP015530	Rhodococcus sp. WB1 plasmid pWB1, complete sequence	79911-79940	6	0.8
CP033688_2	2.1\|1311790\|30\|CP033688\|CRISPRCasFinder	1311790-1311819	30	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	125440-125469	7	0.767
CP033688_2	2.1\|1311790\|30\|CP033688\|CRISPRCasFinder	1311790-1311819	30	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	576541-576570	7	0.767
CP033688_2	2.1\|1311790\|30\|CP033688\|CRISPRCasFinder	1311790-1311819	30	NC_013193	Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence	107046-107075	7	0.767
CP033688_2	2.1\|1311790\|30\|CP033688\|CRISPRCasFinder	1311790-1311819	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	517672-517701	7	0.767
CP033688_2	2.1\|1311790\|30\|CP033688\|CRISPRCasFinder	1311790-1311819	30	MT657333	Microbacterium phage Casend, complete genome	60372-60401	7	0.767
CP033688_2	2.1\|1311790\|30\|CP033688\|CRISPRCasFinder	1311790-1311819	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4993432-4993461	8	0.733
CP033688_2	2.1\|1311790\|30\|CP033688\|CRISPRCasFinder	1311790-1311819	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	34530-34559	8	0.733
CP033688_2	2.1\|1311790\|30\|CP033688\|CRISPRCasFinder	1311790-1311819	30	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	132707-132736	9	0.7
CP033688_2	2.1\|1311790\|30\|CP033688\|CRISPRCasFinder	1311790-1311819	30	NZ_CP006989	Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence	326083-326112	9	0.7
CP033688_2	2.1\|1311790\|30\|CP033688\|CRISPRCasFinder	1311790-1311819	30	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1583679-1583708	9	0.7
CP033688_2	2.1\|1311790\|30\|CP033688\|CRISPRCasFinder	1311790-1311819	30	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	369234-369263	9	0.7

1. spacer 1.1|422229|25|CP033688|CRISPRCasFinder matches to CP036360 (Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence) position: , mismatch: 4, identity: 0.84

gggtgggatggcccgcctcctcctc	CRISPR spacer
ctatgggatggcccgcctcctcttc	Protospacer
  .*******************.**

2. spacer 2.1|1311790|30|CP033688|CRISPRCasFinder matches to NZ_CP015530 (Rhodococcus sp. WB1 plasmid pWB1, complete sequence) position: , mismatch: 6, identity: 0.8

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
gctcccgcggcggcggttcggtgcgcaggg	Protospacer
 * ********* **********.**.* *

3. spacer 2.1|1311790|30|CP033688|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccggtcgcgtcgccggttcggtgtgcgggc	Protospacer
.*. .**** ******************

4. spacer 2.1|1311790|30|CP033688|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
cgggcagcggcgccggctcggtgtgcggca	Protospacer
. . * **********.************.

5. spacer 2.1|1311790|30|CP033688|CRISPRCasFinder matches to NC_013193 (Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccggcagcggcgccggttcgctgtgccgct	Protospacer
.*. * ************** ***** **

6. spacer 2.1|1311790|30|CP033688|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccgtcaccgccgccggttcggtgagcggcg	Protospacer
.*..*  ** ************* ******

7. spacer 2.1|1311790|30|CP033688|CRISPRCasFinder matches to MT657333 (Microbacterium phage Casend, complete genome) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg----	CRISPR spacer
tctcccgcggcaccggttcggt----gacgccct	Protospacer
** ********.**********    *.**

8. spacer 2.1|1311790|30|CP033688|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.733

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccggccgcggcgcccgttcggtgagcgagc	Protospacer
.*. ********** ******** ***.

9. spacer 2.1|1311790|30|CP033688|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.733

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccttccgcgtcgccggttcggtgtgttcgg	Protospacer
.* .***** ***************.   *

10. spacer 2.1|1311790|30|CP033688|CRISPRCasFinder matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 9, identity: 0.7

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
cgggtcaatgcgccggttcggtgtccggcg	Protospacer
. . .*.  *************** *****

11. spacer 2.1|1311790|30|CP033688|CRISPRCasFinder matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 9, identity: 0.7

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccacccgcggcggcagttcggtgtaataat	Protospacer
.*********** *.*********.  .

12. spacer 2.1|1311790|30|CP033688|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.7

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
agcagagcggccccggttcggggtgcggcc	Protospacer
      ***** ********* *******

13. spacer 2.1|1311790|30|CP033688|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 9, identity: 0.7

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
agcagagcggccccggttcggggtgcggcc	Protospacer
      ***** ********* *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3785711 : 3850567

Tupanvirus(17.65%)

holin,tRNA,protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZP82648.1\|3785711_3788243_-\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	1.0e-128	39.7
AZP82649.1\|3788579_3788918_-	Lsr2 family protein	A0A2D1GPL8	Mycobacterium_phage	2.1e-16	41.5
AZP82650.1\|3789061_3790561_-\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	3.3e-74	36.6
AZP82651.1\|3790607_3791423_-	type III pantothenate kinase	NA	NA	NA	NA
AZP82652.1\|3791425_3791857_-	aspartate 1-decarboxylase	NA	NA	NA	NA
AZP82653.1\|3791856_3792783_-	pantoate--beta-alanine ligase	NA	NA	NA	NA
AZP82654.1\|3792779_3793691_-	DUF2520 domain-containing protein	NA	NA	NA	NA
AZP82655.1\|3793806_3795168_-	hypothetical protein	NA	NA	NA	NA
AZP82656.1\|3795255_3795732_-	DUF3180 domain-containing protein	NA	NA	NA	NA
AZP82657.1\|3795731_3796280_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
AZP82658.1\|3796388_3796790_-	dihydroneopterin aldolase	NA	NA	NA	NA
AZP82659.1\|3796782_3797586_-	dihydropteroate synthase	S4W084	Pandoravirus	3.9e-21	33.0
AZP82660.1\|3797605_3798220_-	GTP cyclohydrolase I FolE	E7DN69	Pneumococcus_phage	6.6e-45	53.9
AZP82661.1\|3798236_3800636_-\|protease	ATP-dependent zinc metalloprotease FtsH	E5EQU5	Bathycoccus_sp._RCC1105_virus	2.8e-107	44.7
AZP82662.1\|3800966_3801380_-	VOC family protein	NA	NA	NA	NA
AZP82663.1\|3801519_3802449_+	alpha/beta hydrolase	NA	NA	NA	NA
AZP82664.1\|3802445_3803633_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
AZP82665.1\|3803632_3804646_+	alcohol dehydrogenase	NA	NA	NA	NA
AZP83861.1\|3804673_3806257_+	HNH endonuclease	NA	NA	NA	NA
AZP82666.1\|3807546_3807846_-	PE family protein	NA	NA	NA	NA
AZP82667.1\|3808162_3808912_+	DUF541 domain-containing protein	NA	NA	NA	NA
AZP82668.1\|3808919_3809576_-	hypoxanthine phosphoribosyltransferase	A0A1V0SEQ1	Hokovirus	2.2e-06	26.4
AZP82669.1\|3809581_3810544_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
AZP83862.1\|3810522_3811602_-	hydrolase	NA	NA	NA	NA
AZP82670.1\|3811598_3812984_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
AZP82671.1\|3813105_3813594_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	9.6e-31	45.1
AZP82672.1\|3813574_3814663_-	DUF475 domain-containing protein	A0A172Q0Y5	Acinetobacter_phage	4.0e-53	41.0
AZP82673.1\|3814790_3816041_+	hypothetical protein	NA	NA	NA	NA
AZP82674.1\|3816076_3816778_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
AZP82675.1\|3816774_3817116_+	DUF2304 domain-containing protein	NA	NA	NA	NA
AZP82676.1\|3817112_3818054_-	NAD-dependent epimerase/dehydratase family protein	A0A2K9L0I7	Tupanvirus	2.7e-37	34.8
AZP82677.1\|3818019_3819828_+	hypothetical protein	NA	NA	NA	NA
AZP82678.1\|3819982_3821170_-\|transposase	IS481-like element ISMav5 family transposase	NA	NA	NA	NA
AZP82679.1\|3821399_3822605_-	DNA polymerase III subunit delta'	NA	NA	NA	NA
AZP82680.1\|3822702_3824364_+	adenylate/guanylate cyclase domain-containing protein	A0A1B1IWY2	uncultured_Mediterranean_phage	6.4e-18	32.8
AZP82681.1\|3824360_3827159_-	type I DNA topoisomerase	A0A2K9L5F8	Tupanvirus	1.6e-98	30.5
AZP82682.1\|3827363_3827954_-	hypothetical protein	NA	NA	NA	NA
AZP83863.1\|3828142_3828346_-	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	2.0e-14	56.2
AZP82683.1\|3828594_3830925_+	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	5.1e-05	27.1
AZP82684.1\|3831007_3832045_+	hypothetical protein	NA	NA	NA	NA
AZP83864.1\|3832041_3832410_-	helicase	NA	NA	NA	NA
AZP83865.1\|3832366_3832633_-	pilus biosynthesis protein TadE	NA	NA	NA	NA
AZP82685.1\|3832692_3832893_-	DUF4244 domain-containing protein	NA	NA	NA	NA
AZP82686.1\|3833520_3834324_-	hypothetical protein	NA	NA	NA	NA
AZP82687.1\|3834320_3835496_-	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA
AZP83866.1\|3835492_3836545_-	helicase	NA	NA	NA	NA
AZP82688.1\|3836659_3836929_+	hypothetical protein	NA	NA	NA	NA
AZP82689.1\|3837062_3837920_+	HAD-IB family hydrolase	NA	NA	NA	NA
AZP82690.1\|3838385_3839144_-	oxidoreductase	NA	NA	NA	NA
AZP82691.1\|3839133_3840780_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.0e-13	28.0
AZP82692.1\|3840776_3841652_-	ABC transporter permease	NA	NA	NA	NA
AZP82693.1\|3841644_3842571_-	ABC transporter permease	NA	NA	NA	NA
AZP82694.1\|3842572_3844198_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AZP82695.1\|3844282_3844825_-	DUF4232 domain-containing protein	NA	NA	NA	NA
AZP82696.1\|3844939_3846892_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	3.8e-86	39.2
AZP83867.1\|3846983_3847655_-\|protease	serine protease	NA	NA	NA	NA
AZP82697.1\|3847875_3848415_+\|holin	phage holin family protein	NA	NA	NA	NA
AZP82698.1\|3848415_3849381_+	alpha/beta hydrolase	NA	NA	NA	NA
AZP82699.1\|3849373_3850567_-\|protease	acid resistance serine protease MarP	A0A1B1IRH0	uncultured_Mediterranean_phage	2.6e-05	25.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage