CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034486	Staphylococcus aureus strain PMB 64-1 chromosome, complete genome	9 crisprs	NA	2	2	0	0

Cas Category Instructions

Results visualization

1. CP034486

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CRISPR-Cas detection and classification

Crispr_ID: CP034486_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034486_1

43502-43588

Orphan

Consensus_repeat	Method
CTAAAGGTGAAGAGGAACGCAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034486_1

>merge|CP034486|1|43502-43588|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATATTAAGGCACAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGG

>CP034486|1|1|43502-43588|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGG	ATATTAAGGCACAACTGCATAAAAGCCTCTAATCA
CTAAAGGTGAAGAGGAACGCAGTTGG

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Crispr_ID: CP034486_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034486_2

204563-204643

Orphan

Consensus_repeat	Method
TTCTTTATGTTGGGGCCCCGCCAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034486_2

>merge|CP034486|2|204563-204643|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACTTGCATTGTTTGTAGAATTTCTTTTCGAAATTCTTTATGTTGGGGCCCCGCCAACT

>CP034486|2|2|204563-204643|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACT	TGCATTGTTTGTAGAATTTCTTTTCGAAA
TTCTTTATGTTGGGGCCCCGCCAACT

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Crispr_ID: CP034486_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034486_3

594904-594996

Orphan

Consensus_repeat	Method
TAAGAAACACTAATCAATAAATTGATAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034486_3

>merge|CP034486|3|594904-594996|CRISPRCasFinder
TAAGAAACACTAATCAATAAATTGATAAGAAGATTAGAGGAACGCTTGAGCTAAAGCTCATGCATAAGAAACACTAATCAATAAATTGATAAG

>CP034486|3|3|594904-594996|CRISPRCasFinder
TAAGAAACACTAATCAATAAATTGATAAG	AAGATTAGAGGAACGCTTGAGCTAAAGCTCATGCA
TAAGAAACACTAATCAATAAATTGATAAG

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Crispr_ID: CP034486_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034486_4

1042941-1043026

Orphan

Consensus_repeat	Method
TCTGTGTTGGGGCCCCATCCCCAACTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034486_4

>merge|CP034486|4|1042941-1043026|CRISPRCasFinder
TCTGTGTTGGGGCCCCATCCCCAACTTGCACATTATTGAAATCTGACTTTTGGTCAGCTTCTGTGTTGGGGCCCCGTCCCCAACTT

>CP034486|4|4|1042941-1043026|CRISPRCasFinder
TCTGTGTTGGGGCCCCATCCCCAACTT	GCACATTATTGAAATCTGACTTTTGGTCAGCT
TCTGTGTTGGGGCCCCGTCCCCAACTT

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Crispr_ID: CP034486_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034486_5

1539725-1539805

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034486_5

>merge|CP034486|5|1539725-1539805|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTCAACTTTAGTTGTTAGGGGCTTCT

>CP034486|5|5|1539725-1539805|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCATGCGCTTAGCGCAGGCGCTCCTACTTTT
CAACTTTAGTTGTTAGGGGCTTCT

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Crispr_ID: CP034486_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034486_6

1651164-1651249

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034486_6

>merge|CP034486|6|1651164-1651249|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTTCGTCACCTTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTT

>CP034486|6|6|1651164-1651249|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	TCGTCACCTTCTATGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGACTTT

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Crispr_ID: CP034486_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034486_7

1805253-1805350

Orphan

Consensus_repeat	Method
TTTCTGCGAATTTTATGAGCTAGAAAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034486_7

>merge|CP034486|7|1805253-1805350|CRISPRCasFinder
TTTCTGCGAATTTTATGAGCTAGAAAGGCTTATGCATTAGTAGCGAAGCTAACTAATGCGTTCCTTTATTTTCTGCGAATTTTATGAGCTAGAAAGGC

>CP034486|7|7|1805253-1805350|CRISPRCasFinder
TTTCTGCGAATTTTATGAGCTAGAAAGGC	TTATGCATTAGTAGCGAAGCTAACTAATGCGTTCCTTTAT
TTTCTGCGAATTTTATGAGCTAGAAAGGC

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Crispr_ID: CP034486_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034486_8

1822167-1822245

Orphan

Consensus_repeat	Method
CCAACTTGCATTGTCTCTAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034486_8

>merge|CP034486|8|1822167-1822245|CRISPRCasFinder
CCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTAGTTGGGACTCCGCCAACTTGCATTGTCTGTAGAAA

>CP034486|8|8|1822167-1822245|CRISPRCasFinder
CCAACTTGCATTGTCTCTAGAAA	TTGGGAATCCAATTTCTCTTAGTTGGGACTCCG
CCAACTTGCATTGTCTGTAGAAA

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Crispr_ID: CP034486_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034486_9

1959178-1959285

Orphan

Consensus_repeat	Method
ATTATTATAAATAATAAGTACACTACGGTTTACAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034486_9

>merge|CP034486|9|1959178-1959285|CRISPRCasFinder
ATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGG

>CP034486|9|9|1959178-1959285|CRISPRCasFinder
ATTATTATAAATAATAAGTACACTACGGTTTACAGTTGG	ATCTTCGCTCCAACTGCATAAGAGCCACTA
ATTATTATAAATAATAAGTACACTACGGTTTACAGTTGG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP034486_2	2.1\|204589\|29\|CP034486\|CRISPRCasFinder	204589-204617	29	CP034486.1	2094900-2094928	0	1.0
CP034486_2	2.1\|204589\|29\|CP034486\|CRISPRCasFinder	204589-204617	29	CP034486.1	874001-874029	1	0.966
CP034486_2	2.1\|204589\|29\|CP034486\|CRISPRCasFinder	204589-204617	29	CP034486.1	1185944-1185972	1	0.966
CP034486_2	2.1\|204589\|29\|CP034486\|CRISPRCasFinder	204589-204617	29	CP034486.1	2485071-2485099	1	0.966
CP034486_2	2.1\|204589\|29\|CP034486\|CRISPRCasFinder	204589-204617	29	CP034486.1	210022-210050	2	0.931
CP034486_2	2.1\|204589\|29\|CP034486\|CRISPRCasFinder	204589-204617	29	CP034486.1	253704-253732	2	0.931
CP034486_2	2.1\|204589\|29\|CP034486\|CRISPRCasFinder	204589-204617	29	CP034486.1	253761-253789	2	0.931
CP034486_2	2.1\|204589\|29\|CP034486\|CRISPRCasFinder	204589-204617	29	CP034486.1	302615-302643	2	0.931
CP034486_2	2.1\|204589\|29\|CP034486\|CRISPRCasFinder	204589-204617	29	CP034486.1	521895-521923	2	0.931
CP034486_2	2.1\|204589\|29\|CP034486\|CRISPRCasFinder	204589-204617	29	CP034486.1	522008-522036	2	0.931
CP034486_2	2.1\|204589\|29\|CP034486\|CRISPRCasFinder	204589-204617	29	CP034486.1	1008650-1008678	2	0.931
CP034486_2	2.1\|204589\|29\|CP034486\|CRISPRCasFinder	204589-204617	29	CP034486.1	2281050-2281078	2	0.931
CP034486_2	2.1\|204589\|29\|CP034486\|CRISPRCasFinder	204589-204617	29	CP034486.1	2281108-2281136	2	0.931
CP034486_2	2.1\|204589\|29\|CP034486\|CRISPRCasFinder	204589-204617	29	CP034486.1	2281166-2281194	2	0.931
CP034486_2	2.1\|204589\|29\|CP034486\|CRISPRCasFinder	204589-204617	29	CP034486.1	2390541-2390569	2	0.931
CP034486_2	2.1\|204589\|29\|CP034486\|CRISPRCasFinder	204589-204617	29	CP034486.1	2405761-2405789	2	0.931
CP034486_6	6.1\|1651194\|26\|CP034486\|CRISPRCasFinder	1651194-1651219	26	CP034486.1	521817-521842	2	0.923

1. spacer 2.1|204589|29|CP034486|CRISPRCasFinder matches to position: 2094900-2094928, mismatch: 0, identity: 1.0

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtagaatttcttttcgaaa	Protospacer
*****************************

2. spacer 2.1|204589|29|CP034486|CRISPRCasFinder matches to position: 874001-874029, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

3. spacer 2.1|204589|29|CP034486|CRISPRCasFinder matches to position: 1185944-1185972, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

4. spacer 2.1|204589|29|CP034486|CRISPRCasFinder matches to position: 2485071-2485099, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcttgtagaatttcttttcgaaa	Protospacer
*******.*********************

5. spacer 2.1|204589|29|CP034486|CRISPRCasFinder matches to position: 210022-210050, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaaattcttttcgaaa	Protospacer
********.******* ************

6. spacer 2.1|204589|29|CP034486|CRISPRCasFinder matches to position: 253704-253732, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

7. spacer 2.1|204589|29|CP034486|CRISPRCasFinder matches to position: 253761-253789, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

8. spacer 2.1|204589|29|CP034486|CRISPRCasFinder matches to position: 302615-302643, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

9. spacer 2.1|204589|29|CP034486|CRISPRCasFinder matches to position: 521895-521923, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttctttttgaaa	Protospacer
********.***************.****

10. spacer 2.1|204589|29|CP034486|CRISPRCasFinder matches to position: 522008-522036, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttctttttgaaa	Protospacer
********.***************.****

11. spacer 2.1|204589|29|CP034486|CRISPRCasFinder matches to position: 1008650-1008678, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

12. spacer 2.1|204589|29|CP034486|CRISPRCasFinder matches to position: 2281050-2281078, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

13. spacer 2.1|204589|29|CP034486|CRISPRCasFinder matches to position: 2281108-2281136, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

14. spacer 2.1|204589|29|CP034486|CRISPRCasFinder matches to position: 2281166-2281194, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

15. spacer 2.1|204589|29|CP034486|CRISPRCasFinder matches to position: 2390541-2390569, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

16. spacer 2.1|204589|29|CP034486|CRISPRCasFinder matches to position: 2405761-2405789, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

17. spacer 6.1|1651194|26|CP034486|CRISPRCasFinder matches to position: 521817-521842, mismatch: 2, identity: 0.923

tcgtcaccttctatgttggggccccg	CRISPR spacer
tcgtcagcttctgtgttggggccccg	Protospacer
****** *****.*************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP034486_2	2.1\|204589\|29\|CP034486\|CRISPRCasFinder	204589-204617	29	MN693281	Marine virus AFVG_25M371, complete genome	6448-6476	7	0.759
CP034486_4	4.1\|1042968\|32\|CP034486\|CRISPRCasFinder	1042968-1042999	32	MT889383	Mycobacterium phage MiniLon, complete genome	11248-11279	9	0.719
CP034486_4	4.1\|1042968\|32\|CP034486\|CRISPRCasFinder	1042968-1042999	32	KT281791	Mycobacterium phage Lolly9, complete genome	11248-11279	9	0.719

1. spacer 2.1|204589|29|CP034486|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 7, identity: 0.759

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtaggatttcttctaagtg	Protospacer
**************.*******.* .. .

2. spacer 4.1|1042968|32|CP034486|CRISPRCasFinder matches to MT889383 (Mycobacterium phage MiniLon, complete genome) position: , mismatch: 9, identity: 0.719

gcacattattgaaatctgacttttggtcagct	CRISPR spacer
accccttcttgaaatctgactttaggtcctga	Protospacer
.* * ** *************** ****

3. spacer 4.1|1042968|32|CP034486|CRISPRCasFinder matches to KT281791 (Mycobacterium phage Lolly9, complete genome) position: , mismatch: 9, identity: 0.719

gcacattattgaaatctgacttttggtcagct	CRISPR spacer
accccttcttgaaatctgactttaggtcctga	Protospacer
.* * ** *************** ****

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage