Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP034463 Streptomyces sp. GGCR-6 chromosome, complete genome 4 crisprs WYL,csa3,DEDDh,cas4,Cas9_archaeal,cas3,DinG 0 4 2 0

Results visualization

1. CP034463
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034463_1 39012-39101 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034463_2 310307-310400 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034463_3 2950489-2950594 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034463_7 10354886-10354976 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP034463_2 2.1|310340|28|CP034463|CRISPRCasFinder 310340-310367 28 NZ_CP032323 Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence 567650-567677 5 0.821
CP034463_2 2.1|310340|28|CP034463|CRISPRCasFinder 310340-310367 28 CP054917 Streptomyces sp. NA02950 plasmid unnamed, complete sequence 61973-62000 6 0.786
CP034463_2 2.1|310340|28|CP034463|CRISPRCasFinder 310340-310367 28 NC_011879 Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence 132959-132986 6 0.786
CP034463_2 2.1|310340|28|CP034463|CRISPRCasFinder 310340-310367 28 NZ_CP049749 Rhodococcus fascians A21d2 plasmid pA21d2, complete sequence 142522-142549 6 0.786
CP034463_4 4.1|3400094|33|CP034463|PILER-CR 3400094-3400126 33 NZ_CP012185 Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence 114339-114371 6 0.818
CP034463_4 4.1|3400094|33|CP034463|PILER-CR 3400094-3400126 33 NZ_CP012182 Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence 37694-37726 6 0.818
CP034463_7 7.1|10354916|31|CP034463|CRISPRCasFinder 10354916-10354946 31 NZ_CP030864 Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence 305361-305391 6 0.806
CP034463_7 7.1|10354916|31|CP034463|CRISPRCasFinder 10354916-10354946 31 NZ_CP035092 Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence 110196-110226 6 0.806
CP034463_7 7.1|10354916|31|CP034463|CRISPRCasFinder 10354916-10354946 31 NC_008688 Paracoccus denitrificans PD1222 plasmid 1, complete sequence 357543-357573 6 0.806
CP034463_1 1.1|39041|32|CP034463|CRISPRCasFinder 39041-39072 32 NZ_CP035092 Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence 110195-110226 7 0.781
CP034463_1 1.1|39041|32|CP034463|CRISPRCasFinder 39041-39072 32 NC_008688 Paracoccus denitrificans PD1222 plasmid 1, complete sequence 357542-357573 7 0.781
CP034463_2 2.1|310340|28|CP034463|CRISPRCasFinder 310340-310367 28 NC_004808 Streptomyces rochei plasmid pSLA2-L DNA, complete sequence 107015-107042 7 0.75
CP034463_2 2.1|310340|28|CP034463|CRISPRCasFinder 310340-310367 28 MN234170 Mycobacterium phage MalagasyRose, complete genome 46232-46259 7 0.75
CP034463_4 4.1|3400094|33|CP034463|PILER-CR 3400094-3400126 33 NZ_CP023549 Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence 331024-331056 8 0.758
CP034463_4 4.1|3400094|33|CP034463|PILER-CR 3400094-3400126 33 NC_049470 Arthrobacter phage TripleJ, complete genome 7741-7773 8 0.758
CP034463_4 4.1|3400094|33|CP034463|PILER-CR 3400094-3400126 33 NZ_CP032695 Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence 2439594-2439626 10 0.697

1. spacer 2.1|310340|28|CP034463|CRISPRCasFinder matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 5, identity: 0.821

agtcggtcggtgggggcgagtcggtcgg	CRISPR spacer
atccggtcggtgggggcggggcggtcgc	Protospacer
* .***************.* ****** 

2. spacer 2.1|310340|28|CP034463|CRISPRCasFinder matches to CP054917 (Streptomyces sp. NA02950 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.786

agtcggtcggtgggggcgagtcggtcgg	CRISPR spacer
tgggcctcggtgggggtgagtcggtcgg	Protospacer
 *    **********.***********

3. spacer 2.1|310340|28|CP034463|CRISPRCasFinder matches to NC_011879 (Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence) position: , mismatch: 6, identity: 0.786

agtcggtcggtgggggcgagtcggtcgg	CRISPR spacer
gggtggtcggtgggggttagtcggtcgt	Protospacer
.* .************. ********* 

4. spacer 2.1|310340|28|CP034463|CRISPRCasFinder matches to NZ_CP049749 (Rhodococcus fascians A21d2 plasmid pA21d2, complete sequence) position: , mismatch: 6, identity: 0.786

agtcggtcggtgggggcgagtcggtcgg	CRISPR spacer
cgcgtgtcggtggcggcgaggcggtcgg	Protospacer
 *.  ******** ****** *******

5. spacer 4.1|3400094|33|CP034463|PILER-CR matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 6, identity: 0.818

atgtcaccgactccagcggcccgctcgacctga	CRISPR spacer
atgtcaccgactccggcggccggctcaccatgg	Protospacer
**************.****** ****. * **.

6. spacer 4.1|3400094|33|CP034463|PILER-CR matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 6, identity: 0.818

atgtcaccgactccagcggcccgctcgacctga	CRISPR spacer
atgtcaccgactccggcggccggctcaccatgg	Protospacer
**************.****** ****. * **.

7. spacer 7.1|10354916|31|CP034463|CRISPRCasFinder matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.806

gggcggggtggctccggcccccgaggactgc	CRISPR spacer
gtgggggctggctccggcccccgaggccgac	Protospacer
* * *** ****************** * .*

8. spacer 7.1|10354916|31|CP034463|CRISPRCasFinder matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.806

gggcggggtggctccggcccccg--aggactgc	CRISPR spacer
gggcggggtggatccggccaccggcaggatc--	Protospacer
*********** ******* ***  ****..  

9. spacer 7.1|10354916|31|CP034463|CRISPRCasFinder matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.806

gggcggggtggctccggcccccg--aggactgc	CRISPR spacer
gggcggggtggatccggccaccggcaggatc--	Protospacer
*********** ******* ***  ****..  

10. spacer 1.1|39041|32|CP034463|CRISPRCasFinder matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ggcagtcct--cgggggccggagccaccccgccc	CRISPR spacer
--tgatcctgccggtggccggatccaccccgccc	Protospacer
  ...****  *** ******* ***********

11. spacer 1.1|39041|32|CP034463|CRISPRCasFinder matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.781

ggcagtcct--cgggggccggagccaccccgccc	CRISPR spacer
--tgatcctgccggtggccggatccaccccgccc	Protospacer
  ...****  *** ******* ***********

12. spacer 2.1|310340|28|CP034463|CRISPRCasFinder matches to NC_004808 (Streptomyces rochei plasmid pSLA2-L DNA, complete sequence) position: , mismatch: 7, identity: 0.75

agtcggtcggtgggggcgagtcggtcgg	CRISPR spacer
cgtcggtcggtgggggcgggtcagagcc	Protospacer
 *****************.***.*    

13. spacer 2.1|310340|28|CP034463|CRISPRCasFinder matches to MN234170 (Mycobacterium phage MalagasyRose, complete genome) position: , mismatch: 7, identity: 0.75

agtcggtcggtgggggcgagtcggtcgg	CRISPR spacer
gcacggtcggtgagggcgagtcggaggt	Protospacer
.  *********.***********  * 

14. spacer 4.1|3400094|33|CP034463|PILER-CR matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

atgtcaccgactccagcggcccgctcgacctga	CRISPR spacer
ccggcaccgacttcggcggcccgctcgacgagg	Protospacer
 .* ********.*.**************  *.

15. spacer 4.1|3400094|33|CP034463|PILER-CR matches to NC_049470 (Arthrobacter phage TripleJ, complete genome) position: , mismatch: 8, identity: 0.758

atgtcaccgactccagcggcccgctcgacctga	CRISPR spacer
aagtcaccgcctccagcgacccgctcctcatcg	Protospacer
* ******* ********.*******  * * .

16. spacer 4.1|3400094|33|CP034463|PILER-CR matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 10, identity: 0.697

atgtcaccgactccagcggcccgctcgacctga	CRISPR spacer
tcggcaccgacttcggcggcccgctcgatgccg	Protospacer
 .* ********.*.*************. . .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 39176 : 84251 36 Mycobacterium_phage(50.0%) integrase,transposase attL 32731:32747|attR 57172:57188
DBSCAN-SWA_2 10251453 : 10310934 50 Ostreococcus_lucimarinus_virus(16.67%) integrase,transposase attL 10254036:10254050|attR 10265320:10265334
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage