CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029617	Streptomyces sp. WAC 01529 chromosome, complete genome	13 crisprs	csa3,WYL,DEDDh,cas4,cas3,DinG	1	6	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029617_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029617_1

1049992-1050123

Orphan

Consensus_repeat	Method
GGCGCCCCGTAAGGGGCGCGGGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP029617_1

>merge|CP029617|1|1049992-1050123|CRISPRCasFinder
GGGACTCGGTTAGGGGCGCGGGGGCTCTGTAGGAGGCGCGGGGGGCGCCCCGTAAGGGGCGCGGGGCTGTGACATATGCGGCTCCGCCGCGCGGGCGCGACCAGCAGCAGGCGCCCCGTAAGGGGCGCGGGG

>CP029617|1|1|1049992-1050123|CRISPRCasFinder
GGGACTCGGTTAGGGGCGCGGGG	GCTCTGTAGGAGGCGCGGGG
GGCGCCCCGTAAGGGGCGCGGGG	CTGTGACATATGCGGCTCCGCCGCGCGGGCGCGACCAGCAGCA
GGCGCCCCGTAAGGGGCGCGGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP029617.1\|AZM57456.1\|1038279_1039248_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
CP029617.1\|AZM51976.1\|1054427_1055318_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
CP029617.1\|AZM51975.1\|1053465_1054524_+\|chitinase	unknown	unknown	gnl\|CDD\|119350
CP029617.1\|AZM51967.1\|1044748_1046269_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|184957
CP029617.1\|AZM51973.1\|1051671_1052709_-\|asparaginase	unknown	unknown	gnl\|CDD\|199208
CP029617.1\|AZM51972.1\|1050163_1051567_-\|aspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|237031
CP029617.1\|AZM51965.1\|1041636_1042593_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP029617.1\|AZM51979.1\|1057936_1059109_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
CP029617.1\|AZM51978.1\|1056695_1057940_+\|carnitine-dehydratase	unknown	unknown	gnl\|CDD\|224717
CP029617.1\|AZM51970.1\|1048787_1049273_+\|AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP029617.1\|AZM51977.1\|1055320_1056079_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225717
CP029617.1\|AZM51980.1\|1059136_1059697_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240137
CP029617.1\|AZM51966.1\|1043484_1044660_+\|lactate-2-monooxygenase	unknown	unknown	gnl\|CDD\|239448
CP029617.1\|AZM51974.1\|1052850_1053306_+\|ArsR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP029617.1\|AZM51968.1\|1046478_1047801_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238092
CP029617.1\|AZM51969.1\|1047888_1048725_+\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM57457.1\|1042761_1043139_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340413
CP029617.1\|AZM51964.1\|1040037_1041552_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366834
CP029617.1\|AZM51963.1\|1039292_1039934_+\|dioxygenase	unknown	unknown	gnl\|CDD\|238241
CP029617.1\|AZM51981.1\|1059741_1060326_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045

Protein	Function_ID	Function_description	E-value
CP029617.1\|AZM57456.1\|1038279_1039248_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	1.46877e-27
CP029617.1\|AZM51976.1\|1054427_1055318_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	6.59461e-28
CP029617.1\|AZM51975.1\|1053465_1054524_+\|chitinase	gnl\|CDD\|119350	cd02871, GH18_chitinase_D-like, GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.	1.69342e-110
CP029617.1\|AZM51973.1\|1051671_1052709_-\|asparaginase	gnl\|CDD\|199208	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase. Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type II L-asparaginases, which tend to be highly specific for asparagine and localized to the periplasm. They are potent antileukemic agents and have been used in the treatment of acute lymphoblastic leukemia (ALL), but not without severe side effects. Tumor cells appear to have a heightened dependence on exogenous L-aspartate, and depleting their surroundings of L-aspartate may starve cancerous ALL cells. Type II L-asparaginase acts as a tetramer, which is actually a dimer of two tightly bound dimers. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase.	2.73727e-94
CP029617.1\|AZM51972.1\|1050163_1051567_-\|aspartate-ammonia-lyase	gnl\|CDD\|237031	PRK12273, aspA, aspartate ammonia-lyase; Provisional.	0
CP029617.1\|AZM51965.1\|1041636_1042593_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.14425e-12
CP029617.1\|AZM51979.1\|1057936_1059109_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	6.56769e-135
CP029617.1\|AZM51968.1\|1046478_1047801_+\|hypothetical-protein	gnl\|CDD\|238092	cd00161, RICIN, Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.	1.90315e-25
CP029617.1\|AZM51970.1\|1048787_1049273_+\|AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	9.36577e-33
CP029617.1\|AZM51978.1\|1056695_1057940_+\|carnitine-dehydratase	gnl\|CDD\|224717	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion].	1.05608e-137
CP029617.1\|AZM51980.1\|1059136_1059697_-\|hypothetical-protein	gnl\|CDD\|240137	cd04939, PA2301, PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.	2.00135e-68
CP029617.1\|AZM51967.1\|1044748_1046269_+\|MFS-transporter	gnl\|CDD\|184957	PRK14995, PRK14995, SmvA family efflux MFS transporter.	4.55717e-88
CP029617.1\|AZM51974.1\|1052850_1053306_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	6.36096e-43
CP029617.1\|AZM51966.1\|1043484_1044660_+\|lactate-2-monooxygenase	gnl\|CDD\|239448	cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.	0
CP029617.1\|AZM51977.1\|1055320_1056079_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225717	COG3176, COG3176, Putative hemolysin [General function prediction only].	4.9566e-42
CP029617.1\|AZM57457.1\|1042761_1043139_-\|ATP-binding-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	3.31964e-16
CP029617.1\|AZM51964.1\|1040037_1041552_+\|hypothetical-protein	gnl\|CDD\|366834	pfam01839, FG-GAP, FG-GAP repeat. This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N-terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.	0.000113302
CP029617.1\|AZM51963.1\|1039292_1039934_+\|dioxygenase	gnl\|CDD\|238241	cd00421, intradiol_dioxygenase, Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.	2.21401e-36
CP029617.1\|AZM51981.1\|1059741_1060326_-\|transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.41047e-15

>CP029617.1|AZM51970.1|1048787_1049273_+|AsnC-family-transcriptional-regulator
MAVDELDTRILRLLLEQPRTSVREYARVLGIARGTLQARLDRLERDGVITGTGPFLSPAALGHPVLAFVHIEVTQGYLDEVGDALAAVPEIIEAHSITGGGDLLTRVAARDNGHLEDVIQQLIKLPGVVRTRTEMALRERVPHRLLPLVESVGRAAASGQR
>CP029617.1|AZM51969.1|1047888_1048725_+|hypothetical-protein
MQVKGRDIVTAAVGAALTMVLAGCGGNGGDDRSGAGRDQGKAAQDERKDARAVLTAAAKKTAAQSSYKTVQTGQGGTDRAEMLYQKKPAASVIKAEVSKSAANPNGVSHMLSTGGSTYVKTDKVPGKSWYSMDLGGGEDGGGAPRAAGYVAEFAGALAATESTEWVAEEKAGGRTADHYRGKVVLDELAKYTGPALSKDRRDLYVTMAKKQGMKSVVIDMWVGKDDLILKSRETGEGKKGREVINEEYSDFGAVPAISAPPAGSVATWDEFIAAQARP
>CP029617.1|AZM51968.1|1046478_1047801_+|hypothetical-protein
MAAVGAAAAVVAGLQLSPTAFGTDDAADADNKERAAPRRTAAPTRGAASHAERQDFGFSASDGTRFKDGVMSLEPAPSARPTPSTPSTATPRRVAAAAPHGEGWQSGGAAKLLGTGYTIKFYDERAADWLGPYVKRSAAELRRVTNLPITVDTRPVGWDYVRPRGEVVVGLLRRPCVPPADGGSAGWKVVRDGSGSKNLSCGFYASSLPATVTSGHAYIDDEFFTAAGRPAPAMGETYLRNHISHELGHTMGLAHANRSAARGDCVKGTDSGQLPVMCTPANAYQDKRAGAYVQQYDVQGLRHLARGGGAALPPQGKITGIGRKCLDVKGGKAANGTPIQLYACNGGVAQSWIVQKDGTFRALGKCLDNYRNARTDGNRIGLRDCGGGASQRWSVSAGGQIVHAASGKVLEVRGGSTANGTRVQLHAPNGNKRQVWVTPR
>CP029617.1|AZM51967.1|1044748_1046269_+|MFS-transporter
MTPQRDARRWAVLAILSGSLLLIAMDTTILNVAFPSLVTDLRPSSVQQLWIIDVYALVLSGLLVTASALGDRWGHKRLLLIGFGVFALASLLAVFATAPWQVIAARALLGAGGAAIMPATLSILRHVFTDARERALAYAVWSAVFGGGMAFGPVVGGLLVEHDGWHSAFLVNIPVALVIIALGAWILPESHQPREGRWDWWGVGQSVLGMLALAGGIKQLGKGGPADPVAWALLVVAAVTLTVFVRRQLRLEHPLLQVRLFASRPFAIAAASIFLGMIALGSALFLITQWFQYGQGYTPLEAGVHLLPAPLGLVLTSLVTPVLMHRLPIRHVMGGGLLLMTAGLALPWLLQLSGPLGYGDIAVALAVLGCGVGIATTAASVTLMAATPAKDVSGAAAVEETCYELGAAMGVAILGSVATALYRVNLPDLGLADDTSAAVGDSIGEAARVAHELTGPAGNALLSGAAEAFTSGMTPTFLMAAALPLAAAALTWAKIPKGLRPTEDAH
>CP029617.1|AZM51966.1|1043484_1044660_+|lactate-2-monooxygenase
MNQPPRPYKDYQDEIYLDGLRGVVPEFPMTYAELESRAQSALPPSVLSYVAGGAGDERTQNANVTAFDRWGLIPRMFVGASRRDLSVDLFGMTLPSPLFMAPIGVLGICTRDGHGDLATARAAARTGVPMIASTLSADPMESVAAELGETPGFFQLYTPTDRALAESLVRRAEQSGFKAIVVTMDTWITGWRPRDLATSNFPQLRGHCLANYTSDPVFRALLSTDPEHDMQSAVIKWVQVFGNPLTWDDLPWLRSLTSLPLIVKGLCHPEDVRRARDGGVDGIYCSNHGGRQANGGLPALDVLPAVVEAADGLPVLFDSGVRGGADIVKAIALGASAVGVGRPYAYGLGIGGTDGVAHVLRSLLAETDLLMAVDGYPTLADLTPEALQRVL
>CP029617.1|AZM57457.1|1042761_1043139_-|ATP-binding-protein
MEYALPQEAASAGRARRLTCAFLVRPHRRKTELTAERVDDAALVVSELVSNAVQHARGGCRLRVEVSGDRVIVEVYDTSPVRPRVRKPSSERESGRGLAMVRQLTHRLEVVTARRGGKTVRAVLA
>CP029617.1|AZM51965.1|1041636_1042593_-|GNAT-family-N-acetyltransferase
MTTTSLTPPPGLTVRAATPGDAAVVCALLNEVDLLETGRADTELAEVRADLNHPEVDLERDSWLLFEGERLVGYALLWDESGGERIDVDHYVLPGRPQGALHLFDLMEDRAAQRAAANGAARAVLHLHLNTTPTMDLSALSARGWRTVRRYHVMARHIAAASDPFPEPPAGVTLRDCSAEEDRRRAHQLLQECFTEHFDFQPRSYPQWLDDIDAERADWSLIWIAHVDGVGDAAVLRTHDDRPSMAWIGNLGVLPEARGRGIGSHLLRHAFGHYARSGRDRIGLGVDTDNSSGALALYERHGMALDHAVDTWELIRPV
>CP029617.1|AZM51964.1|1040037_1041552_+|hypothetical-protein
MPRSSRTVRLTLPLVAASLLVGGGLSALALGQGSAGAAAGAGRADVAAKPSDDFNGDGYADLVVGASSGTVSGKAEAGYVVVTYGSKNGLDPARKKVISRSTSGVPGAATAKQHFGATFTKGDLDRDGFADLVVGVGGRDASEGSVILWGSASGLTGGTRIATFGRSPQAGDFDGDGTTDLALFAGVPSYGDDPASQPARLWKGPIARTGTPAKTLDFMDKSQWDRGSDQRPDPTCADLDRECENGPRSLSGPVAPEAVGDLNGDGYDDIAMDRYAGDGEWGWGLLYGSPTGFKRERVHGGSGAMAIGDINGDGYDDLVRGDSDYPDYNSRVYVSYGSADGLKEPAQKFDQNTPGVPGAEEEGDSFGRSVAVGDVTGDGYADVAVGAVGEDVGTVAGAGSVVLLRGSADGLTGAGAQVFHQNTAGVPGVAEKDDLFGSATALLDVTGDGHADLAASAVSENARAGAVWSLRGTATGLTAAGSVAFGPKDVAAPNTAAQFGSPLR
>CP029617.1|AZM51963.1|1039292_1039934_+|dioxygenase
MDDETGTAKGPSRKTVLRAAAAVGISVPVSLMGVPALARTAGARGEAPALTPSCDDGDDPTPPQMEGPYFKPNSPRRTSLLQPGTPGTRLTVTGYVFGRSCRPIPQVLMDFWQADTYGTYDNAGYRFRGHQYTDASGAFRLTTVVPGLYPGRTRHLHVKVQAPGRPVLTTQLYFPGEPRNNTDPIFDSRLLMNVRTVGNAKEADFDFVLNVPQ
>CP029617.1|AZM57456.1|1038279_1039248_+|AraC-family-transcriptional-regulator
MRTTVLPGEGNSGEPTGAGMPTHRLEVPMPNALPFAIGTFDTMGPMARAPFPHRHTFHEIVHVTGGTGRHVVDLTGFALRPPNLCFIAPGQVHHWEGVTGLAGHVILFTDDFLLDHPADRDLLRGLAERSWLELPDEAAERTARLVAELDGEYRTGAEGFPGVLRALLHILVVRAARLPARQPAALPPPSRPGSVAAEFVALLGTPEGLLGTPAGAPHSVRTCAEHLGVSVSYLSEAVKASTGRTPGELIRQARVHEAKRLLLRTELSVRQVAARVGFGDPAYFCRFFRRETGASPGDFRRGTGDIHHDHRLQSIARPRSRA
>CP029617.1|AZM51972.1|1050163_1051567_-|aspartate-ammonia-lyase
MSTSPALRREHDLLGERDVPADAYWGIHSLRATENFPITGIPISVYPQLIDALAAVKEAAARANEELGLLPKAKADAIAAACREIRAGHLHDQFVVDVIQGGAGTSTNMNANEVVANRALELLGHPKGAYEHLHPNEDVNLSQSTNDVYPTAVKVATISAVHGLLRAMSVVQDAFAAKALEFRDVLKMGRTQLQDAVPMTLGQEFSAYAVMLDEDRMRLAEAVELIHEINLGATAIGTGLNAPAGYAETARRHLAALTGMPLVTAANLVEATQDCGAFVHLSGVLKRIAVKLSKSCNDLRLLSSGPRAGLNEINLPPVQAGSSIMPGKVNPVIPEVVNQVCFEVIGNDVTITMAAEAGQLQLNAFEPVILHSLAKSITSLKAACLTLAERCVEGITANTEVLRASVETSIGLVTALNPYIGYTAATEIAREALVTGRGVAELVLEKGLLPPERLAELLTPERVAGAA
>CP029617.1|AZM51973.1|1051671_1052709_-|asparaginase
MEAQARRIVVISTGGTIASRWQGTGFAADAPGREVMATAAIPHGITSEVIDLFNVNSPRLTSAQQLTLLHTVHEVLADPGVDGIVVTHGTDTLEESAFLLDVHHHDPRPVVLTGAQKPLGAEDGDGPGNLYDALLTAATVRDLGVLVVFDGKVHAARGTMKTQTLAADAFADPSGPPVGKVGFGKVSIAHRPERPEPLPLPATTATLPRVDMVMHHVDADPLFVETAVGAGAQGIVLVATGAGNATPEFVAAVADAVERGVLVALTTRVPAGPVTEIYTHGGAVDLAGAGAVLTGTLRAGQARSAVLAALLSASGPGERAALLRRVVGEGSGVLDAAGAGAAAAA
>CP029617.1|AZM51974.1|1052850_1053306_+|ArsR-family-transcriptional-regulator
MDAIDRNILRELQNDGRLTNQELAQRVGLSASPCMRRVRQLELDGVIQGYRAVVDPEALGRGFEVLVSIEVRRDRETVEAFEAALQEIPDVIEAYRLFGSPGCLLRIAVADLAAYERLWIERLTALAGVTEVNSQIIMKRIKEPRGLPVDG
>CP029617.1|AZM51975.1|1053465_1054524_+|chitinase
MIGRTLRLLGTALAVACAAQLPAAAAAPPAPSTPLADTCAVKSKPTGKVLQGYWENWDGAANGVHPPFGWTPITDSRIRQHGYNVINAAFPVIRSDGTVLWEDGMDSTVKVATPAEMCQAKADGATILMSIGGATAGIDLSSSRVADRFVETIVPILKKYNFDGIDIDIETGLVGSGNINQLSPSQANLVRIIDGVLARMPANFGLTMAPETAYVTGGSVTYGSIWGAYLPIIKKYADNGRLWWLNMQYYNGSMYGCSGDSYPAGTVQGFTKQTDCLDKGLVIQGTTIKVPYDKQVPGLPAQPGAGGGYMSPSLVAQAWNHYNGALKGLMTWSINWDGSKGWTFGDNFKRLT
>CP029617.1|AZM51976.1|1054427_1055318_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MRASSPWAVDRGCPASCAADRGPRVPLGELARRYAALTYTLTRAAARGDRLADPRVLRGEARAALGALGVRLEAGSAERLSAGDGGVGTLVVANHISWLDAVALLAVEPVSVLAKREVGQWPVIGTLARRAGTRFIDRGGSPRQLPRTVGELARALRGGTSVLVFPQATTWCSAGGGRFRRAVFQAAADAGAPVRPVTVAYRQGGAPSAAAAFLGDEEFTASLRRVAAARGLTVRITAHAPLRGTDRRELAAAAHRSVAGPSDTAYVNRLKLSPNVHPFDPSQLMDHVIRPFRAPL
>CP029617.1|AZM51977.1|1055320_1056079_-|GNAT-family-N-acetyltransferase
MSSTSLVSTANSSSSYVTSIAHTTDQIRAAQRLRHRVFGEELGAVLDTPLPGHDVDDYDDLADHLIVTDTASGDVVGTYRLIPPGRTERSYSDAEFDLRALGGLRSSTVEAGRSCVHPDHRSGAVINLMWSALARYVLLSGHRHLAGCASVPLADGGRAASSAWLLGTAKHAAPPELRVHPRRPWTPTAPAPERPAYADLPPLLRGYLRLGAWMCGAPAHDPEFDVADFFVLLDTERLSARHRRFFLGEDGR
>CP029617.1|AZM51978.1|1056695_1057940_+|carnitine-dehydratase
MPPPLPEQPPAPLPTPDPLPLPLAGITVVSLEQAVAAPFATRQLADLGARVIKVERPGGGDFARRYDTTVHGQASYFVWLNRSKESLTLDLKSEPGREILEELLAGADVFVQNLAPGAATRMGLGADELQARHPSLIPCTVSGYGTDGPWADRKAYDLLVQCQTGLLQLTGTPDEAVRVGISVADIAGGMYAYSGILSALFTRATTGRAPTVEVSLFDALAEWMSQPAYYTRYGGTQPPRVGARHATVAPYGPFTAADGKDVLLSVQNEREWAALCTEFIGRPELADDPRFATGSDRVAHREALDAIISVRFLELGGEEAMKLLDQANIANAGVNSVHEFLDHPVLTERGRWQEVGVPGAPSPVQALLPPADLSGVAPRMDPVPAAGEHTEAILAELGRGPDAIARLLAEGVCR
>CP029617.1|AZM51979.1|1057936_1059109_+|acyl-CoA-dehydrogenase
MSALDSLCPAEQLVVTTVREFVDRQVRPVAQELERTDTYPEALIERMKELGVFGLAVPEEFGGTAVSTPCYVLVTEELARGWMSLAGAMGGHTVVAKLLLHFGTDAQKRRWLPRMATGEVRAAMALTEPGGGSDLQALHTVARRDEEGGGYVVDGAKTWITNSRRSQLIALLCKTDPDAEPRHRGISVLLVEHGPGLTVSRDLPKLGYKGVESCELSFFGYRAPADALLGGVEGEGFGQMMRGLETGRLQVAARAVGVGRAAFEDALRYAQERESFGVPIWQHQSIGNYLADMATSLTAARQLTLHAAREADAGRRVDMEAGMAKLFASEAAMRITLDAVRIHGGNGYSTEFDVERYFRDAPLMIVGEGTNEIQRNVIARQLVARGGLDA
>CP029617.1|AZM51980.1|1059136_1059697_-|hypothetical-protein
MRAPLGDFDVVHPAPEVLGQLVAPVAEAVRGWSGPVPADELIHVDTDPRWADTATFLEHYGPELLDQSANCVVVAGKRGGGTTLAACVVLSGTRVDVNGVVRRQLGSRKASFAPMETATGETGMEYGGITPIGLPAAWPLLVDAAVADLPYVLVGSGSRRGKLIVPGKVFAGLPNAVVIEGLGTAA
>CP029617.1|AZM51981.1|1059741_1060326_-|transcriptional-regulator
MSDLDQLTQSLARNLKRWRNERGFTLDALAARAGVSRGMIIQIEQARTNPSVGITVKLADALGVSITTLLDYEQGPHVRLVPPEQSVRMWSTEAGSSTTLLVGAEAHGPFELWSWYLMPGEGSDSDAHPPGTVELLHVSRGELTLVVDGVEHVVAAGSAATFEANVAHGYHNKGAEPVEMTMSVSVPPAHAASY

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Crispr_ID: CP029617_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029617_2

1354410-1354495

Orphan

Consensus_repeat	Method
GTGGTTGCTCGCGCAGTTCCCCGCGCCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029617_2

>merge|CP029617|2|1354410-1354495|CRISPRCasFinder
GTGGTTGCTCGCGCAGTTCCCCGCGCCCCTTACGGGGCCTTCACTGCGGGTGTGGTGTGGTTGCTCGCGCCGTTCCCCGCGCCCCT

>CP029617|2|2|1354410-1354495|CRISPRCasFinder
GTGGTTGCTCGCGCAGTTCCCCGCGCCCCT	TACGGGGCCTTCACTGCGGGTGTGGT
GTGGTTGCTCGCGCCGTTCCCCGCGCCCCT

Protein	Signature genes	Signature genes Name	Protein_function
CP029617.1\|AZM52202.1\|1347858_1348926_-\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236863
CP029617.1\|AZM52214.1\|1358244_1359675_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
CP029617.1\|AZM52211.1\|1356060_1356612_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
CP029617.1\|AZM52205.1\|1350412_1350847_+\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM52201.1\|1347115_1347862_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
CP029617.1\|AZM52212.1\|1356727_1357144_+\|ketosteroid-isomerase	unknown	unknown	gnl\|CDD\|378915
CP029617.1\|AZM52218.1\|1362918_1364142_-\|acetylornithine-transaminase	unknown	unknown	gnl\|CDD\|235112
CP029617.1\|AZM52207.1\|1351403_1351931_-\|RNA-polymerase-subunit-sigma	unknown	unknown	gnl\|CDD\|274357
CP029617.1\|AZM52200.1\|1346209_1347043_-\|metal-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270315
CP029617.1\|AZM52209.1\|1353544_1354306_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
CP029617.1\|AZM52204.1\|1350051_1350411_+\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM52208.1\|1352050_1353229_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176544
CP029617.1\|AZM52217.1\|1362365_1362911_-\|arginine-repressor	unknown	unknown	gnl\|CDD\|235116
CP029617.1\|AZM52206.1\|1350862_1351366_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
CP029617.1\|AZM52213.1\|1357170_1358145_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381324
CP029617.1\|AZM52215.1\|1359881_1360469_+\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|334450
CP029617.1\|AZM52210.1\|1354519_1356064_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|184957
CP029617.1\|AZM52216.1\|1360472_1361180_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226309
CP029617.1\|AZM57482.1\|1361298_1362312_+\|Bile-acid:sodium-symporter	unknown	unknown	gnl\|CDD\|223462
CP029617.1\|AZM52203.1\|1349333_1349981_-\|phosphatase	unknown	unknown	gnl\|CDD\|319829

Protein	Function_ID	Function_description	E-value
CP029617.1\|AZM52202.1\|1347858_1348926_-\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	7.90152e-169
CP029617.1\|AZM52214.1\|1358244_1359675_-\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
CP029617.1\|AZM52211.1\|1356060_1356612_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.17095e-06
CP029617.1\|AZM52201.1\|1347115_1347862_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	1.04363e-101
CP029617.1\|AZM52212.1\|1356727_1357144_+\|ketosteroid-isomerase	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	2.67384e-12
CP029617.1\|AZM52207.1\|1351403_1351931_-\|RNA-polymerase-subunit-sigma	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	4.11199e-15
CP029617.1\|AZM52200.1\|1346209_1347043_-\|metal-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270315	cd13597, PBP2_lipoprotein_Tp32, The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold. This group includes the lipoprotein Tp32, a periplasmic component of a methionine uptake transporter system, and its closely related homologs. The Tp32 has both structural and sequential homology to the MetQ family of substrate-binding protein, and thus it belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.	2.6377e-125
CP029617.1\|AZM52209.1\|1353544_1354306_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	8.98803e-52
CP029617.1\|AZM52218.1\|1362918_1364142_-\|acetylornithine-transaminase	gnl\|CDD\|235112	PRK03244, argD, acetylornithine transaminase.	0
CP029617.1\|AZM52208.1\|1352050_1353229_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176544	cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.	3.65577e-157
CP029617.1\|AZM52217.1\|1362365_1362911_-\|arginine-repressor	gnl\|CDD\|235116	PRK03341, PRK03341, arginine repressor; Provisional.	2.63346e-87
CP029617.1\|AZM52203.1\|1349333_1349981_-\|phosphatase	gnl\|CDD\|319829	cd07527, HAD_ScGPP-like, subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p). This subfamily includes Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p). GPP1p and GPP2p are involved in glycerol biosynthesis, GPP1 is induced in response to both anaerobic and hyperosmotic stress, GPP2 is induced in response to hyperosmotic or oxidative stress, and during diauxic shift; overexpression of DOG1 or DOG2 confers 2-deoxyglucose resistance. These belong to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.74083e-72
CP029617.1\|AZM52213.1\|1357170_1358145_-\|aldo/keto-reductase	gnl\|CDD\|381324	cd19098, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein. This family includes a group of uncharacterized AKR superfamily proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance in both health and industrial applications.	5.13833e-144
CP029617.1\|AZM52215.1\|1359881_1360469_+\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|334450	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase. Family of domains with putative PNPOx function. Family members were predicted to encode pyridoxamine 5'-phosphate oxidase, based on sequence similarity. However, there is no experimental data to validate the predicted activity and purified proteins, such as yeast YLR456W and its paralogs, do not possess this activity, nor do they bind to flavin mononucleotide (FMN). To date, the only time functional oxidase activity has been experimentally demonstrated is when the sequences contain both pfam01243 and pfam10590. Moreover, some of the family members that contain both domains have been shown to be involved in phenazine biosynthesis. While some molecular function has been experimentally validated for the proteins containing both domains, the role performed by each domain on its own is unknown.	2.46039e-10
CP029617.1\|AZM52210.1\|1354519_1356064_-\|MFS-transporter	gnl\|CDD\|184957	PRK14995, PRK14995, SmvA family efflux MFS transporter.	5.11179e-109
CP029617.1\|AZM52216.1\|1360472_1361180_+\|hypothetical-protein	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	1.14111e-33
CP029617.1\|AZM57482.1\|1361298_1362312_+\|Bile-acid:sodium-symporter	gnl\|CDD\|223462	COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only].	9.03243e-87
CP029617.1\|AZM52206.1\|1350862_1351366_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	9.23374e-11

>CP029617.1|AZM52209.1|1353544_1354306_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MCKRRWPASIVLTCTYSYLLVVDPLTPEGLLSRLALIKAVLGPILRLMFRPRVEGAENIPGTGPVILAGNHLTFIDSMILPLVANRPVFFIGKDEYVTGKGLKGRLMAWFFTGVGMIPVDRDGGRGGVAALMTGRRVLDDGKVFGIYPEGTRSPDGRLYRGRTGIARLTLMTGAPVVPFAMIGTDKLQPGGKGLPRPGKVTVRFGEAMEFSRYDGMDRDRYVLRAVTDSVMTEVMRLSGQEYVDMYATKAKAA
>CP029617.1|AZM52208.1|1352050_1353229_-|glycerophosphodiester-phosphodiesterase
MATQESGQQQPGTSRGRRAVLGAALLGAGTAVAGLPGVARADQRHGHGHGHGGYKELPKPTVIAHRGASGYRPEHTFGSYQLALDMGAHVIEQDVVPTKDGHLVCRHENDITATTDVAAHPEFASRKTTKTVDGTKYTGWFTEDFTLAELKTLRAKERIPGTRQHNTLYDGRWDVPTLEEVFQWAEKQGRKRGRQIWLHIETKHPTYFRKLGLGLEEPLAKLLRRYGRHKKNSPNFLQSFEPSSIQRLAELVSAPRVVLLSGASSRPWDFVEAGDPRTVADLIKPEGLEWMAEYAQGIGPTLDLIIPRKADGSLGTPTTLVEDAHEAGLVLHPYTMRNENTFLPANFRKGTDPAAYGDAFGAFKAYFETGIDGIFSDNPDTALLAAADFADD
>CP029617.1|AZM52207.1|1351403_1351931_-|RNA-polymerase-subunit-sigma
MTYELIPTLIPALRPLLVAEASAEALGSGDDPGDLEQAVWLRLLERLESDGPPADPAGWLRGAVQSEARRSRRATQREVAYPTEPADDSDGGPEQRALTADRHRTLHAAVRRLPGRCPRIMAALLSPEDLTYREIAGELGMSQGSLGPERSRCLGCLRRMLAAEVAAPEPRGRER
>CP029617.1|AZM52206.1|1350862_1351366_-|GNAT-family-N-acetyltransferase
MGMSVTISEAAEADAEQILKLQYLCYQSEAQLYGDYSIEPLTQTLDSIKAELTTGTVLVARLGDEVVASVRGTVDADGTARIGKLIVHPRMRRHGLGGRLLDAVERRLGADGTTKCFQLFSGHRSEQNLQLYRKHGYAPVHTQRVSERLTLVTLAKEAAAGSYVTSA
>CP029617.1|AZM52205.1|1350412_1350847_+|hypothetical-protein
MTGTEEGVKGERRQKLITGPGILLLWLYGVMVVGAVSRSAVQIATDFHKAPLAYSLSALAGLVYGFITYSLVRGGETARRAALVCCAAELVGVLAVGAWTLAEPSAFPDATVWSDFGMGYLFIPVILPVTAIFWLVRARRAAAA
>CP029617.1|AZM52204.1|1350051_1350411_+|hypothetical-protein
MLVALTIATAVAALALAAWCGFAAYRDQPTKDWHFIGMGVVTFLALVQLIVGIVLLARGEDPEQGTTIFVAYLLGSFACVPAAGFMSLAERTRWGSLTVAAGGVVLAVLQVRLYDIWGG
>CP029617.1|AZM52203.1|1349333_1349981_-|phosphatase
MKIQADALLFDNDGTLISSLESVYRCWKRWAEEYGITAEEFARVELHGRPAAEIAADLLPPAEVAEAVARIEELEVSDVPGGVDLLPGTRELLASLPMDRWAVVTSATRVLAEARLAEVGIRPGLLIAADDITRGKPDPEPFLLAAGKLGAAPARCVVFEDAPAGLQAGRAAGMITVALATTHDRAELSADFLVKDLSAVSAQAMAGAVEITVTG
>CP029617.1|AZM52202.1|1347858_1348926_-|methionine-ABC-transporter-ATP-binding-protein
MITTSGLTKVYRSRGREVTALDGVDLHVREGEVYGVIGQSGAGKSSLIRCVNLLERPTSGTVTVAGQDLTALAGRGPRAGRELRRARSRIGMVFQHFNLLSSRTVQDNVELPLEILGLSGQERSRKALELLDLVGLAEKAKAYPAQLSGGQKQRVGIARALAGDPKVLLSDEATSALDPETTRSILQLLRDLNRQLGLTVLLITHEMDVVKSVCDSAALMERGQIVESGTVSELLATPGSELAAALFPVSGEATGEDRTVVDVTFHGEAATQPVISQLSRTYNIDISILGAAMDTVAGKQVGRMRIELPGRFEENVVPIGFLRERGLQVEVAGSDDTDTAVPAPRDAKLVKEGAK
>CP029617.1|AZM52201.1|1347115_1347862_-|ABC-transporter-permease
MTWSEMQPLLEQACWDTLYMVGWSTLIAVVAGLPLGILLVLTERGALLQNAVLNKVLGQVVNIARSMPFIILMVALMTFTRWVTGTTIGREAALVPLAVGAIPFFARLVETSIREVDGGLVEAVQSMGGSTWTVVRKVLVPESLPSLISGATTTIVALIGYSAMAGTVGGGGLGDLALRYGYQRFETELMWITVAILAVVISIIQFAGDYAARRLHKRGGGSGPLLLFRPLRGVLPGTAAAESTTKTG
>CP029617.1|AZM52200.1|1346209_1347043_-|metal-ABC-transporter-substrate-binding-protein
MRNTAKITTAVLAAGALTLGLTACGSDKGSAGDKDGPLVVAATPTPQGEILDYVQKNLAKKAGLDLEVREFTDYVTPNTAVQQGEVFANYFQHKPYLDDFNKKNGTDIVPVPGATVHLEPLGVYSKSVKKLGDLKDGATVAVPNDTTNEARALKLLADNGVIELKKGVGYDATPKDVAKNPKNLKFKELEAAQLPRSLGDLDAAVINGNYALEAKLSPAKDALVAEKAKGNPYGNFLAVKKGDEKDPRVKKLAKLLTSPEVKKFIDDKYDGAVVAAF
>CP029617.1|AZM52210.1|1354519_1356064_-|MFS-transporter
MTSTHRQTAEAEVERGPGRWLALAVLVLAVLLVAVDATVLGLATPYISEDLKPSGTQLLWIGDVYSFVIAGLLVSMGSLGDRIGRKKLLLTGAVAFGAVSVLNSYATSPELMILARALLGVAGATLMPSTLALIRNIFHDPRERSLAVGIWGAMASAGAAVGPVVGGFLLEHFWWGSVFLINLPVMAVLVLVGIKLLPESKNPAPGPWDLVSVGLSLIGMIAVVYAIKEAAAHGLRWDAVLAAVVGAAALTWFVRRQLTLPAPLLDMRLFRNRGFSGAVLADLLTVLGLSGLVFFLSQFLQLVQGRRPFEAGLAELPAAVGAVGAGLIAGVVARRFSVRVVVAGGLAAVGLSLAALTGLSQHTGYPLLGASLLVVGIGAGFSFTVTADVILSSVPKEQAGAASAVSETAYELGAALGIALLGSIVTGVYRDFVAPAGTPPDVASAAHESLGGAVESIDALPSAQADALLASAQTAFVDGLRLAAGVGAAVLLATAAVAWFLLKGQKLEDTPDPE
>CP029617.1|AZM52211.1|1356060_1356612_-|TetR-family-transcriptional-regulator
MSVDRDQVLRSAAALLTRKATSTMDEVARAAGISRATLHRHFAGRDALVRALEELGLQECEAVLDRSELGAGSAQDALRRLVKEIEPHAGLLAFLYTENQLFEGDTQHEGWARIDARLAALFRRGQESGEFRIDLTPAWLTEALYGLIGSGAWAVQDGRVAAKDFSYMIAELLIGGARRRVDS
>CP029617.1|AZM52212.1|1356727_1357144_+|ketosteroid-isomerase
MSHRIIQDAFQAFASNDPVRISAVLTEDAEWLSPPGNPTAVALGTTHHMVGREAVVRFFAQDFPRLYARDVAVTFHGVHVDGERAAVEASMTATLADGNPYSNDYCFVVELRDGLVHRVREYLDTARGLRMVSGEAAR
>CP029617.1|AZM52213.1|1357170_1358145_-|aldo/keto-reductase
MPFARLAAATTPTAHLGLGLAAVGRPGYITLGREADLPPSRSVEALRARTFELLDAAYASGVRYVDVARSYGRSEEFLADWLRARPDNRDVVVGSKWGYTYTADWRTDAEGPHEVKDHSVAAYDRQRAESAELLGDRLDLYQIHSVTPESPALTDKELHARLAELAAEGVTVGLSVSGPEQAAAIRAALAVTVDGEPLFRTVQATYNLLETSAGPALAEARDAGLTVLVKEGMANGRLAAPHAPAALRQVAEEAGLGCDAVALAALLCEPWTGVVLSGAATSVQLVSNLHATAVDLDAGHLERLAGLVEEPRAYWGRRGELPWH
>CP029617.1|AZM52214.1|1358244_1359675_-|argininosuccinate-lyase
MSSNNGGDVRLWGGRFADGPAEALAKLSASVHFDWRLAPYDVAGSRAHARVLHTAGLLTEDELARMLAGLDQLEADVADGSFVGTLADEDVHTALERGLLERLGPDLGGKLRAGRSRNDQVATLFRMYLRDHARIIGALLADLQGALVGLAEAHPDVAMPGRTHLQHAQPVLFAHHVLAHVQSLSRDAERLRQWDARTAVSPYGSGALAGSSLGLDPEAVAEDLGFEHGSVGNSIDGTASRDFVAEFAFITAMIGVNLSRIAEEIIIWNTKEFSFVTLHDAFSTGSSIMPQKKNPDIAELARGKSGRLIGNLTGLMATLKALPLAYNRDLQEDKEPVFDSCDQLEVLLPAFTGMMATLTVNRERMEELAPAGFSLATDIAEWLVKQGVPFRVAHEVAGECVKECETRGIELEQLTDEQFAKISEHLTPEVRTVLNVPGALASRDGRGGTAPSAVAVQLAEVKADLAGQREWAAARG
>CP029617.1|AZM52215.1|1359881_1360469_+|pyridoxamine-5'-phosphate-oxidase
MGKTHARIDGRLRTFIEEQPMFFTATAPLSGDGTINLSPKGLKGSFVVLDELTVAYLDFAGSNAETIAHLRENGRITLMWCAFQGPPNIVRVHGRGEPVFRDDPRFKDLLGHFPGIDPTPHGLRAIVVVTADLVRDTCGYAVPFMTYDEDRDLHGKRFAREDDASLSAYFTKKEHIARSIDGLPGLPLPLPPTSV
>CP029617.1|AZM52216.1|1360472_1361180_+|hypothetical-protein
MRPRAVALACAVLFAAAGTLGAAPEPGPPLPERMADTGGGSQLITAQARRTGSTTGTLTWWDRRGGRWVEAGSAPARFGARGLAEGAARRQGTDTTPTGLYGLPHAFGIAPSPDGTTYPYRRVTEESWWCQDNASRSYNRWSEPRAADCRAAEAEHLITYDPQYTHALVIDYNYARPVRGRGAGIFLHVHGPGATAGCVSVPEEAMRAVLRWAKPERRPHIAIGTASGATALTRY
>CP029617.1|AZM57482.1|1361298_1362312_+|Bile-acid:sodium-symporter
MHRGVQPEQTILSPADSGSGADKAARRAVTVFPLLVLAAGALGLVAPGAFEGWGTNVPYLLGVVMFCMGLTMTPLDFQGVVKRPWAVALGLVAHYVIMPGLGWVIAHALGLSPQLAAGVILVGCAPSGTASNVVTYLARGDVALSVSVATVSTVLAPLVTPPLTLLLAGEYLPVDAGSMVTDILKTVLLPVIAGLVVRLLLGRYVDRVLGALPWLSALTIAAIVAIVVAGSAAAIKSAAALVFLAVFLHNGLGLALGYGAGKLARLGPPASRAMAFEVGMQNSGRAASLATAHFSPLAALPSAVFSVWHNVSGALVAAFMARSRKSPVGRRSSPSGD
>CP029617.1|AZM52217.1|1362365_1362911_-|arginine-repressor
MSQAQGNEHGDHAGPAVPQTRTARHRRIVDILNRQPVRSQSQLAKLLADDGLTVTQATLSRDLDELNAVKIRNAEGDLIYAVPSEGGFRTPRAPLGESAKEERMRRLSAELLISAEASANLVVLRTPPGAAQFLASAIDQAELHDVLGTIAGDDTLMLISREPAGGQALADHLLRLASNEH
>CP029617.1|AZM52218.1|1362918_1364142_-|acetylornithine-transaminase
MSNQELTTRWQGALMDNYGTPRLPLVRGEGTKLWDADGKEYVDFVGGIAVNALGHAHPAIVEAVSAQIASLGHVSNLFVAEPPVALAERLLQLFGREGRVYFCNSGAEANEGAFKIGRLTGRPHMVATDGGFHGRTMGALALTGQPGKQKPFLPLPGEVTHVPYGDVEALRAAVTTDTAFVIIEPIQGENGVVVPPAGYLRAAREITRATGTLLVLDEVQTGIGRTGHWFEHLAHEGVDPDIVTLAKGLGGGLPLGATVAFGAAAELFKPGHHGTTFGGNPVACAAGLAVVETIAAEGLLENTKRAGEKLRDGIESLGHPLVDHVRGSGLLLGIVLTEPLAPRAQQAAQDAGFLVNVPAPDVVRLMPPLNVRDDEVDAFLRALSGILDEADKAAEAAEADGDGRSGE

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Crispr_ID: CP029617_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029617_3

1727302-1727377

Orphan

Consensus_repeat	Method
GGACTTGCGGGGGTCAGGCTTGCG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP029617_3

>merge|CP029617|3|1727302-1727377|CRISPRCasFinder
GGACTTGCGGGGGTCAGGCTTGCGAGGGGCAGGCCTGCCCCCGGGAGGGGTCAGGCTTGCGGGGGTCAGGCTTGCG

>CP029617|3|3|1727302-1727377|CRISPRCasFinder
GGACTTGCGGGGGTCAGGCTTGCG	AGGGGCAGGCCTGCCCCCGGGAGGGGTC
AGGCTTGCGGGGGTCAGGCTTGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP029617.1\|AZM52512.1\|1729192_1729426_+\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM52507.1\|1724259_1725561_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|225070
CP029617.1\|AZM52505.1\|1722289_1723000_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|153123
CP029617.1\|AZM52501.1\|1715412_1715799_-\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|377315
CP029617.1\|AZM52513.1\|1729473_1730268_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376731
CP029617.1\|AZM52516.1\|1732931_1733510_-\|alkaline-shock-response-membrane-anchor-protein-AmaP	unknown	unknown	gnl\|CDD\|380217
CP029617.1\|AZM52510.1\|1727408_1728044_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
CP029617.1\|AZM52518.1\|1734474_1734660_-\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM52515.1\|1732127_1732883_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|187602
CP029617.1\|AZM52502.1\|1716127_1717678_+\|peptidase-S8	unknown	unknown	gnl\|CDD\|173799
CP029617.1\|AZM52508.1\|1725575_1726460_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180458
CP029617.1\|AZM52517.1\|1734126_1734471_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377129
CP029617.1\|AZM52503.1\|1717691_1719293_+\|peptidase-S8	unknown	unknown	gnl\|CDD\|173799
CP029617.1\|AZM52506.1\|1723024_1724263_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|368185
CP029617.1\|AZM52504.1\|1720488_1721346_-\|lysoplasmalogenase	unknown	unknown	gnl\|CDD\|377946
CP029617.1\|AZM52514.1\|1730337_1732122_+\|glucoamylase	unknown	unknown	gnl\|CDD\|225922
CP029617.1\|AZM52519.1\|1734719_1735208_-\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|377129
CP029617.1\|AZM57512.1\|1719559_1720582_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224195
CP029617.1\|AZM52509.1\|1726461_1727259_-\|acetoacetate-decarboxylase	unknown	unknown	gnl\|CDD\|377649
CP029617.1\|AZM52511.1\|1728075_1729071_+\|DEDDh-family-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|180377

Protein	Function_ID	Function_description	E-value
CP029617.1\|AZM52507.1\|1724259_1725561_-\|amidohydrolase	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	1.85443e-14
CP029617.1\|AZM52505.1\|1722289_1723000_-\|hypothetical-protein	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	5.0906e-100
CP029617.1\|AZM52501.1\|1715412_1715799_-\|DUF485-domain-containing-protein	gnl\|CDD\|377315	pfam04341, DUF485, Protein of unknown function, DUF485. This family includes several putative integral membrane proteins.	6.71195e-34
CP029617.1\|AZM52513.1\|1729473_1730268_+\|hypothetical-protein	gnl\|CDD\|376731	pfam02104, SURF1, SURF1 family.	7.4638e-48
CP029617.1\|AZM52516.1\|1732931_1733510_-\|alkaline-shock-response-membrane-anchor-protein-AmaP	gnl\|CDD\|380217	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP. The founding member of this family, AmaP (Asp23 membrane anchoring protein), is related to Asp23 through part of its length, but includes a highly hydrophobic N-terminal region that should make it an integral membrane protein. Asp23 (alkaline shock protein of 23 kDa), described in PMID:7864904, is a cytosolic protein in Staphylococcus aureus, strongly induced by a pH shift from 7 to 10, and also recruited to the membrane. AmaP appears to be the partner protein with an integral membrane segment and the ability to anchor Asp23 to the membrane. This model was built to identify full-length homologs of AmaP, while excluding Asp23. Some but not all members of this family score above the cutoffs of Pfam model version PF03780.11, but full-length homologs of Asp23 score considerably higher. Asp23 family members previously were known as DUF322.	1.00582e-21
CP029617.1\|AZM52510.1\|1727408_1728044_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	4.90458e-08
CP029617.1\|AZM52515.1\|1732127_1732883_+\|oxidoreductase	gnl\|CDD\|187602	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR. This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	8.50402e-69
CP029617.1\|AZM52502.1\|1716127_1717678_+\|peptidase-S8	gnl\|CDD\|173799	cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.18901e-50
CP029617.1\|AZM52508.1\|1725575_1726460_-\|hypothetical-protein	gnl\|CDD\|180458	PRK06194, PRK06194, hypothetical protein; Provisional.	1.21107e-130
CP029617.1\|AZM52517.1\|1734126_1734471_-\|hypothetical-protein	gnl\|CDD\|377129	pfam03780, Asp23, Asp23 family, cell envelope-related function. The alkaline shock protein Asp23 was identified as an alkaline shock protein that was expressed in a sigmaB-dependent manner in Staphylococcus aureus. Following an alkaline shock Asp23 accumulates in the soluble protein fraction of the S. aureus cell. Asp23 is one of the most abundant proteins in the cytosolic protein fraction of stationary S. aureus cells, with a copy-number of >25000 per cell. A second Asp23-family protein, AmaP, which is encoded within the asp23-operon, is required to localize Asp23 to the cell membrane. The overall function for the family is thus a cell envelope-related one in Gram-positive bacteria.	5.08344e-05
CP029617.1\|AZM52503.1\|1717691_1719293_+\|peptidase-S8	gnl\|CDD\|173799	cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	3.1197e-54
CP029617.1\|AZM52506.1\|1723024_1724263_-\|amidohydrolase	gnl\|CDD\|368185	pfam04909, Amidohydro_2, Amidohydrolase. These proteins are amidohydrolases that are related to pfam01979.	2.13734e-30
CP029617.1\|AZM52504.1\|1720488_1721346_-\|lysoplasmalogenase	gnl\|CDD\|377946	pfam07947, YhhN, YhhN family. The members of this family are similar to the hypothetical protein yhhN expressed by E. coli. Many are annotated as possible transmembrane proteins, and in fact they all have a high proportion of hydrophobic residues. A human member of this family, formerly known as TMEM86B, is a lysoplasmalogenase that catalyzes the hydrolysis of the vinyl ether bond of lysoplasmalogen. Putative conserved active site residues have been proposed for the YhhN family.	3.03453e-25
CP029617.1\|AZM52514.1\|1730337_1732122_+\|glucoamylase	gnl\|CDD\|225922	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism].	8.1884e-130
CP029617.1\|AZM52519.1\|1734719_1735208_-\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|377129	pfam03780, Asp23, Asp23 family, cell envelope-related function. The alkaline shock protein Asp23 was identified as an alkaline shock protein that was expressed in a sigmaB-dependent manner in Staphylococcus aureus. Following an alkaline shock Asp23 accumulates in the soluble protein fraction of the S. aureus cell. Asp23 is one of the most abundant proteins in the cytosolic protein fraction of stationary S. aureus cells, with a copy-number of >25000 per cell. A second Asp23-family protein, AmaP, which is encoded within the asp23-operon, is required to localize Asp23 to the cell membrane. The overall function for the family is thus a cell envelope-related one in Gram-positive bacteria.	1.45245e-35
CP029617.1\|AZM57512.1\|1719559_1720582_+\|hypothetical-protein	gnl\|CDD\|224195	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism].	3.52626e-06
CP029617.1\|AZM52509.1\|1726461_1727259_-\|acetoacetate-decarboxylase	gnl\|CDD\|377649	pfam06314, ADC, Acetoacetate decarboxylase (ADC). This family consists of several acetoacetate decarboxylase (ADC) proteins (EC:4.1.1.4).	1.84264e-46
CP029617.1\|AZM52511.1\|1728075_1729071_+\|DEDDh-family-exonuclease	gnl\|CDD\|180377	PRK06063, PRK06063, DEDDh family exonuclease.	2.81296e-167

>CP029617.1|AZM52509.1|1726461_1727259_-|acetoacetate-decarboxylase
MARVRYGARTEAEIAAARTASSRLPEIWSTGVAAVWESDPDAVAAVLPPPLKPTGRPLVRANISKVDLPGYPLGAGSVAVAAEHGGVAGWYPLVMPMTHERALIGGREVFGEPKKLGEVEVDRDGLVIRASLARHGIAFVEVRGAVGGALPLPEPARRTDFYFKFLPAVDGSGFDADPVLVHCVRNEKVRKLESVTGDVVLRESMYDPVADLPVRAVVEITIGEKTTDQQGRVVERVSAQALLPYIHQRYDDPAQILDGPPDGSV
>CP029617.1|AZM52508.1|1725575_1726460_-|hypothetical-protein
MELREGQVAVVTGAASGIGLALARRFAADGLRVVLADVEEGALEKAAEGLRAEGATVHARVVDVGDREQVFALADEAYDRFGAVHVLCNNAGVGSGAEGRMWEHEPNDWKWAFEVNVWGVFHGIQAFVPRMIAGGEPGHVVNTSSGDGGIAPLPTASVYAVTKAAVVTMTESLYAHLKAEHARVGASVLFPGPHMLRTGLWESHRNRPERYAKSRPRRTPYRSLGQWEAAMKEAGREVEFSPVEQVADFVADGIAAGRFWLLPESEHSDRQIRARARSMLDRSDPAYLEHFILD
>CP029617.1|AZM52507.1|1724259_1725561_-|amidohydrolase
MSDQEHRNPQDPYLIISSDCHAGLPTEEYRPYLDSRFHRAFDGFLGEREARREEATRLGIRNDAFAAKWFHDHEEGLRGGWDTAQRLKELDGDGVAAEVVFPDADAVDSRTAAPFGVGLGLSGDQDPELGMAGAQAHNRWLADFVSEHPERHCGVALLPVTGEVDRVVAEIHRAKESGLGALMIPSMWVDKAPYHDRRYDPVWAAAAECAMPVVTHSGAAPRHEYGDHLGIYVSEVTWWPARPLWFLLWSGVFERHPHLRFGVAESGCWWLPNLLWFMDRLYLGAHGGKKLSPFAELKRPPHEYLDRQIFVCATNTKRRELAQRYEIGVDNILWGSDFPHPEGTWPDTRAWLTRTFHDIPVAETRRMLGLAAAEVFGFDTAALAPLARRIGPTPAELGQDSDQSAVEASWARSREVGRHWLTDHDFPVLGVTS
>CP029617.1|AZM52506.1|1723024_1724263_-|amidohydrolase
MTEDRYTVISADCHAGADLLDYRPYLDSRHHEAFDAWAATYVNPYEDLLADTADRNWNSARRLAELEEDGIVAEVVFPNTIPPFFPSASLMAPAPTREEFELRWAGLRAHNRWLADFCAAAPGRRAGVFQILLNDVDRAVEEIHRSVKAGLTGGLMLPGTPPGSGLPELYSSAYDPIWAACAELGVPVNHHAGSASPPLGEEPAARAVFMVETTWFSHRALWHLVFGGAFRRHPGLRLVLTEQGSGWIPGVLDMLDYYHARLVAAATRTGAADTAESKFGAGLAEAMGKGPSEVWRENCFVGASFMRPHEAALRDRIGLDKIMWGSDYPHDEGTYPHSREGLRRAYAGLPREEIAAMAGGNAARVYGFDLERLGRIAARVGPTVQELDEPLKEAPAGATSPVFAPGGSVRVW
>CP029617.1|AZM52505.1|1722289_1723000_-|hypothetical-protein
MTEATHEEAHGGALGSRLNWLRAAVLGANDGIVSTAGLVVGVAGATDERGTLLTAGLAGLLAGSMSMAAGEYVSVSTQRDSEKAALAMEKRELREQPEAELAELTDLLAERGLSRDVAREAAEQLTERDALRAHARVELGIDPDDLTNPWHAAWASFIAFTVGALLPLLAIVLPPADWRLGVTVVSVLGALALTGWSSARLGAAAARPAILRNVAGGALAMAVTYGAGALLGAVGV
>CP029617.1|AZM52504.1|1720488_1721346_-|lysoplasmalogenase
MAAEGLRDARGPRNARRAHAHRARHAHRAARRNRARADGRGAGGVTGRPAPRLLLGAFALAALGDLVALLADSDPGHAVCKPLLMPLLAAYVAVRRGPRLLIVALLFGWGGDTLLLFDAEPAFLAGMGSFAAGHVCYLVLFKRYGEGTRYRARGAALVAAYALALVVTVALLWPDLPAGMRGPVAGYSVLLTAMAFRATALGFTAAAGGALFLLSDTLIATGVAEWPQPPRPDFAIMLTYLAAQYLLAGALLRASHQRIGTGTAVSSADRTTTTPSAATSPRAGA
>CP029617.1|AZM57512.1|1719559_1720582_+|hypothetical-protein
MPRTTAAASAASIAPSAPRRRPSAGPAVAVLVLVAVAALIPLLGPSVALRGTGEARAPGTGGVTLLRAVVFGALCVQLGEVFVARLARRVPGAPLDRAPRGWGAYAAWAGCAAALGLAAVVANGNVVPQQLADLDIGRLHDSRDGWLALVEVNAFLAAAVCARSRRPSAAALPLAAVIVAEALRAHPPTEDFPLAGSGLTLVHLTCGALWAGGLLYVLRILRRWRITAPEESVAVLGLYARGAAVLFAAITVTGVFSTLRRMPPGTVMEQLTETAYGRTLLAKLLLVAVVAVLALLARRRLRGTAGRLGAYAPARGEVAALGVVVVLSALLTAVPVPIRW
>CP029617.1|AZM52503.1|1717691_1719293_+|peptidase-S8
MTRFHSSRTTGLSRSRRASVSRRALALPLGVAVVSAVAFLPGSASARPASMPDAPASASVSSASASSADAASMSYVVNVRPGKGSSARVKKAIVKAGGDVVIAYDKIGVIVVHSANPDFAKVIRQVKGVDSAGATRTAPLSAQSDNALGSERTLTAEEVKAAAGKAVAGQDELEPLQWDLPAMKADKAHEISLGSRKVTVGVLDSGVDDTHPDIAPNFDRRASASCLNGVPVQKDNAWRPVAKESDHGMHVAGSIAAAKNGTGVTGVAPGVKVASLKVAEPATGLYYTEAVVCGFVWAADHGVDVTNNSYYTDPWLFNCTTDDDQKALVDAVSRAARYAERKGAVNVAAAGNAKTDLAQEEIVDKTSPNDTTPVTRTIKTKECFDLPSQLPGVVTVSATGAKNIKASYSNYGKGVIDITAPGGDATRYQAPNPPAVDGRILSTLPGGKFGYKGGTSMASPHAAGVAALLKSTHPHASPERIKALLYRQADAMACTDPYDYDGDGKVDAVCEGGKNKNGFYGVGMADALDAVRK
>CP029617.1|AZM52502.1|1716127_1717678_+|peptidase-S8
MAHLPSRRRTALTVPLGIALAASVGFAPGAATAAPDESPAPASVASAAKDAPVFAYVVNTRADHRTIAYVKKAIAKAGGSVVVAHDKIGVIVVHSSNPLFAERIRDVRGVRSAGATHTAPLRAAGTTDDGKAKLLSEADAKSLKRSAAPGAEPMEADQWDLRAIGADKAAKINPGSKKVTVAVIDTGVDDTHPDLAPNFSASQSASCVGGKADTSPGAWRPANKDHYHGTHVAGEIGAARNGVGVAGVAPGVKIAGIKVADPVDELFYPENVVCAFVFAAEHSVEITNNSYYVDPWLYNCKDDPDQRAILDAVNRAQLYAQRKGILNVASAGNSNHDLDSDAIVDKTSPDDSTPVTRTIDPHECLDVPTQLPGVVTTSATGVKNLKSSYSTYGKGVIDVTAPGGDRYQLPTDTPSKNGNILSTMPNGEYGWLRGTSMAAPHAAGVAALLKSTHPKAGPAELQRLLKAQADRMECPTAPYDPDGDGDVDAVCESGGKGENGFYGSGLVDALDAVKKK
>CP029617.1|AZM52501.1|1715412_1715799_-|DUF485-domain-containing-protein
MATAAPPPSKGGAGNEPAPHAPSTEEFTEVQESAEFGELRRAHRSFAFPLTVAFITWYLVYVLLSNYAGDLMGTKLFGNINVALVLGLGQFLTTFLIAWFYSRHAAAKLDPKSEAIKSRMESRMEGDA
>CP029617.1|AZM52510.1|1727408_1728044_+|TetR-family-transcriptional-regulator
MKGKETRGHLVREDVLAAAERLVKRHGPETLTMRGLAAELGTAVTSIYWHVGNRESLLDALVERTLADLGEIHPAGRTPARRVVSVARALRRQLLDHPHLVAMVHERGLTERMFLPAQRSLVHEVHEAGLRGARAADAVRAVQVHVVGHVLVERNRERAPAQRPAEQEPWTRETAEQDGALARALAGPLDPEALFTTSVKALVTGLLGPGT
>CP029617.1|AZM52511.1|1728075_1729071_+|DEDDh-family-exonuclease
MLEDRTTAASAATWPAAYPTGYAVVDVETTGLARDDRIVSAAVYRVGAQGEIEDHWYTLVNPQRDPGPVWIHGLTSEMLADAPLFKDVAEEFASRLDGRVLVAHNAVFDWSMIAREYARAERTAPVRQRLCTIALSKELALPLPNHKLESLAAHFGVEQRHAHNALDDARVLAEAFRPSLHAAAGGNVRLPLLECRPLTEWSDGAPRIVRQSTGPAPSSSYRPVSWRPSRKRPPCPYPNPGRYESGKPLKQGMRVAFSGDTSVERDLLEDRAVEAGLHIATSVSRLTSLLVTNDPDSGTSKTVKARQFGTPVIDEAAFGQLLQDVAPAAES
>CP029617.1|AZM52512.1|1729192_1729426_+|hypothetical-protein
MARCEVCGNDYGMSFEVHAQGSVHVFDCFSCAIHRMAPICEHCRCRIIGQGVEVEGHWYCGAHCSRAEGRVGIVDKV
>CP029617.1|AZM52513.1|1729473_1730268_+|hypothetical-protein
MYRFLLTRQWVILTLIGLVLIPVMVELGFWQLHRHEHRVAQNERISKALAADPVPAERLTSPGHEVPRTDLYRRVSAKGTFDTEHEVVVRRRTNSDDEVGFHVLTPFVLDDGKVLLVNRGWIPADGPQTAFPKIPGAPKGEVTVTGRLMADETSAASGIKDVRGLPDRQIMLISSGQQADSLGKQVLGGYIEQTSPEPRDGSPELIGEPDHSGIGAHMAYAVQWWLFAAGVPVGWVVLVRRERRDRAAAAQAPAAEAETAPASA
>CP029617.1|AZM52514.1|1730337_1732122_+|glucoamylase
MSRPIEDYALIGDHQTAALIARDGSLDWLCLPRFDSAACFAALLGDEENGHWRIAPKGADSCSRRAYRRDSLVLDTEWETEEGSVRVTDFMPQRDRSPDVVRIVEGLKGSVTLQSTLRLRFDYGSVVPWMRKVDGHRVAVAGPDSVWLRSEPPVRTWGRDFGTHSEFTVEEGEKVAFVLTWHPSHEPRPPLVDPHESLRESLHDWRAWASRCQYDGPHRDAVIRSLITLKALTYAPTGGVVAAPTTSLPEELGGVRNWDYRFCWLRDSTLTLGALLLAGYLEEAEAWRDWLLRAVAGNAADLQIVYGLAGERRLPEYEIPWLPGYEGSAPVRIGNEAVEQLQLDVYGEVVDSLALAHRSGLARRPQAWNLQLCLLEFLRDKWREPDQGLWEVRGPRRHFVYSKVMVWVAADRAVRALEEDPELPGDADRWRELRDEVHREVCEKGYDPERNTFTQSYGSTELDASLLLIPHTGFLPPDDPRVIGTIDAVRADLTHHGLLRRYTSDQEEIDGLPGTEGTFIVCSFWLVDALHMTGRKKEAHELFEHLVSLTNDVGLLAEEYDPVSGRQLGNFPQAFSHIGLVNTALALFSEDTEG
>CP029617.1|AZM52515.1|1732127_1732883_+|oxidoreductase
MDLGLKDRVYVVTGATRGLGNATARELVADGAKVVVTGRDEKTVAEAAAELGPNAVGVAADNADPAVAEQLIAAAREHFGGFDGVLISVGGPAPGFAADNTDEQWQAAFDSVFLGAVRLARTAAAELREGGVIAFVLSGSVYEPIAGLTISNGLRPGLAGFAKSLASEVGPRGIRVLGVLPGRIATDRMRQLDGLSPDPEGTRAANEAGIPLRRYGTPEEFGRTAAFLLSPAASYLTGIMVPVDGGARRGF
>CP029617.1|AZM52516.1|1732931_1733510_-|alkaline-shock-response-membrane-anchor-protein-AmaP
MPRTVNRVLLALAGLVLLVLGGSVLAIGLGASPPSWWLHDGRHDVLLSTAERTRWRDEGWFWPAVIAALAVIVLLALWWLSAQLRRRRLAEVLVATGDGEGALVRGRAMEDVLAGEAEALDGVERARTALTGRRGTPRARVDLVLAPDATPSEALHRFSAEVLAPARDSAGLASLPATVRLRGVKHRAERVS
>CP029617.1|AZM52517.1|1734126_1734471_-|hypothetical-protein
MAPQVAPGERGATRIADRVVAKIAARAAREAVGTVPADGSPPHATVSVRHDSARVRVSLELDYPCDIGRQCGAVRHQVTERVRTLAGMDVPEVVVQVERLHSARVRAAAQGRTR
>CP029617.1|AZM52518.1|1734474_1734660_-|hypothetical-protein
MNMAVIGMVAGMALGFAGYFGGFGAFLLVAALGAIGFVAGRFLEGDLEPGEFFRGRGDRRR
>CP029617.1|AZM52519.1|1734719_1735208_-|Asp23/Gls24-family-envelope-stress-response-protein
MTDTGERKTAQTLEKDSPNQGLTGGAARRGGGDPGSRGRTTIADGVVEKIAGLAARDVEGVHAMGGGLARTFGAVRDRVPGGSKSVSRGVKAEVGEVQTALDLEIVVEYGVPIADVTQDVRENVIAAVERMTGLEVVEVNIAVSDVKLPDEDDDEESQGRLQ

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Crispr_ID: CP029617_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029617_5

2239549-2239690

Orphan

Consensus_repeat	Method
TCCGCCCCCACCGGGGCGAGCCTTGACGACGGCACCGCCCGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029617_5

>merge|CP029617|5|2239549-2239690|CRISPRCasFinder
TCCGCCCCCACCGGGGCGAGCCTTGACGACGGCACCGCCCGGTGCCGGGTGAACGGGTGGGTGGGTGGGGAAGCTTCGCCGCGAAGCGGCGGGAAGGATCCGCCCCCACCGGGGCGAGCCTTGACGACGGCACCGCCCGGTG

>CP029617|5|5|2239549-2239690|CRISPRCasFinder
TCCGCCCCCACCGGGGCGAGCCTTGACGACGGCACCGCCCGGTG	CCGGGTGAACGGGTGGGTGGGTGGGGAAGCTTCGCCGCGAAGCGGCGGGAAGGA
TCCGCCCCCACCGGGGCGAGCCTTGACGACGGCACCGCCCGGTG

Protein	Signature genes	Signature genes Name	Protein_function
CP029617.1\|AZM57570.1\|2232961_2233768_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP029617.1\|AZM52905.1\|2235365_2237105_+\|copper-oxidase	unknown	unknown	gnl\|CDD\|259938
CP029617.1\|AZM52910.1\|2245001_2245883_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
CP029617.1\|AZM52912.1\|2247698_2248529_+\|ABC-transporter	unknown	unknown	gnl\|CDD\|366444
CP029617.1\|AZM57566.1\|2226953_2227928_-\|hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240644
CP029617.1\|AZM52902.1\|2231785_2232838_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
CP029617.1\|AZM57567.1\|2229147_2230026_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
CP029617.1\|AZM52911.1\|2246682_2247702_+\|daunorubicin/doxorubicin-resistance-ABC-transporter-ATP-binding-protein-DrrA	unknown	unknown	gnl\|CDD\|130256
CP029617.1\|AZM52907.1\|2239848_2241060_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|182234
CP029617.1\|AZM52904.1\|2234684_2235233_+\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM52908.1\|2241252_2242281_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197318
CP029617.1\|AZM52906.1\|2237264_2239025_+\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
CP029617.1\|AZM52915.1\|2252946_2254275_-\|2-methylisoborneol-synthase	unknown	unknown	gnl\|CDD\|173835
CP029617.1\|AZM52913.1\|2248568_2251919_-\|AfsR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226418
CP029617.1\|AZM52909.1\|2243178_2244777_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|184957
CP029617.1\|AZM52903.1\|2233764_2234505_-\|DUF998-domain-containing-protein	unknown	unknown	gnl\|CDD\|377627
CP029617.1\|AZM57569.1\|2230073_2231711_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270298
CP029617.1\|AZM57568.1\|2228278_2229133_+\|polysaccharide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226666
CP029617.1\|AZM57571.1\|2242501_2243053_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379883
CP029617.1\|AZM52914.1\|2252024_2252915_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|215135

Protein	Function_ID	Function_description	E-value
CP029617.1\|AZM57570.1\|2232961_2233768_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	6.88668e-12
CP029617.1\|AZM52905.1\|2235365_2237105_+\|copper-oxidase	gnl\|CDD\|259938	cd13870, CuRO_2_CopA_like_1, The second cupredoxin domain of CopA copper resistance protein like family. The members of this family are copper resistance protein (CopA) homologs. CopA is multicopper oxidase (MCO) related to laccase and L-ascorbate oxidase, both copper-containing enzymes. CopA is involved in copper resistance in bacteria. CopA mutant causes a loss of function, including copper tolerance and oxidase activity, and copA transcription is inducible in the presence of copper. Although MCOs have diverse functions, majority of them have three cupredoxin domain repeats that include one mononuclear and one trinuclear copper center. The copper ions are bound in several sites: Type 1, Type 2, and/or Type 3. The ensemble of types 2 and 3 copper is called a trinuclear cluster. MCOs oxidize their substrate by accepting electrons at a mononuclear copper center and transferring them to the active site trinuclear copper center. The cupredoxin domain 2 of 3-domain MCOs has lost the ability to bind copper.	1.54364e-56
CP029617.1\|AZM52910.1\|2245001_2245883_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	8.11159e-157
CP029617.1\|AZM52912.1\|2247698_2248529_+\|ABC-transporter	gnl\|CDD\|366444	pfam01061, ABC2_membrane, ABC-2 type transporter.	3.88814e-22
CP029617.1\|AZM57566.1\|2226953_2227928_-\|hydroxyacid-dehydrogenase	gnl\|CDD\|240644	cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	6.38937e-114
CP029617.1\|AZM52902.1\|2231785_2232838_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.37956e-95
CP029617.1\|AZM57567.1\|2229147_2230026_+\|ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.40191e-61
CP029617.1\|AZM52911.1\|2246682_2247702_+\|daunorubicin/doxorubicin-resistance-ABC-transporter-ATP-binding-protein-DrrA	gnl\|CDD\|130256	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	1.25226e-138
CP029617.1\|AZM52907.1\|2239848_2241060_-\|MFS-transporter	gnl\|CDD\|182234	PRK10091, PRK10091, MFS transport protein AraJ; Provisional.	5.25434e-91
CP029617.1\|AZM52908.1\|2241252_2242281_-\|hypothetical-protein	gnl\|CDD\|197318	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds; their substrates range from nucleic acids to phospholipids and perhaps, proteins.	8.64064e-24
CP029617.1\|AZM52915.1\|2252946_2254275_-\|2-methylisoborneol-synthase	gnl\|CDD\|173835	cd00687, Terpene_cyclase_nonplant_C1, Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in fungi, bacteria and Dictyostelium.	7.1728e-88
CP029617.1\|AZM52906.1\|2237264_2239025_+\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
CP029617.1\|AZM52913.1\|2248568_2251919_-\|AfsR-family-transcriptional-regulator	gnl\|CDD\|226418	COG3903, COG3903, Predicted ATPase [General function prediction only].	8.41953e-63
CP029617.1\|AZM52909.1\|2243178_2244777_-\|MFS-transporter	gnl\|CDD\|184957	PRK14995, PRK14995, SmvA family efflux MFS transporter.	9.20313e-79
CP029617.1\|AZM52903.1\|2233764_2234505_-\|DUF998-domain-containing-protein	gnl\|CDD\|377627	pfam06197, DUF998, Protein of unknown function (DUF998). Family of conserved archaeal proteins.	4.86139e-09
CP029617.1\|AZM57569.1\|2230073_2231711_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270298	cd13580, PBP2_AlgQ_like_1, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold. This subgroup includes uncharacterized periplasmic-binding proteins that are closely related to high molecular weight (HMW) alginate bining proteins (AlgQ1 and AlgQ2) found in gram-negative soil bacteria. The HMW alginate uptake system is composed of a novel pit formed on the cell surface and a pit-dependent ATP-binding cassette (ABC) transporter in the inner membrane. The transportation of HMW alginate from the pit to the ABC transporter is mediated by periplasmic HMW alginate-binding proteins (AlgQ1 and AlgQ2). Alginate is an anionic polysaccharide that is made up of alpha-L-mannuronate and its 5'-epimer, alpha-L-guluronate. Alginate is present in the cell walls of brown seaweeds, where it forms a viscous gum by binding water. Alginate is also produced by two bacteria genera Pseudomonas and Azotobacter. AlgQ1 and AlgQ2 belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. However, unlike other bacterial periplasmic-binding proteins that deliver small solutes to ABC transporters, AlgQ1/2 can bind a macromolecule and may have specificity for either sugar or a certain type of polysaccharide.	3.52381e-39
CP029617.1\|AZM57568.1\|2228278_2229133_+\|polysaccharide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	1.17885e-101
CP029617.1\|AZM57571.1\|2242501_2243053_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|379883	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal. This family of bacterial transcriptional repressors is characterized by the short approximately 50 amino acid stretch of residues constituting the helix-turn-helix DNA binding motif, around the YRFhY motif. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. Another target protein is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	4.8277e-19
CP029617.1\|AZM52914.1\|2252024_2252915_-\|SAM-dependent-methyltransferase	gnl\|CDD\|215135	PLN02244, PLN02244, tocopherol O-methyltransferase.	2.99999e-15

>CP029617.1|AZM52906.1|2237264_2239025_+|NAD+-synthase
MPQLRLALNQIDSTVGDLAGNAEAIVHWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVHASRQALHALAARLKDEGFGELPVVVGYLDRTEEAKPRYGQPAGAPRNAAAVLHRGEVALTFSKHHLPNYGVFDEFRYFVPGETLPIVRVHGVDVALAICEDLWQDGGRVPATRSAGAGLLLSINASPYEQNKDDQRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDKDGEVIARAPQFAEGCVVLDLDLPAAAPVPPSGVVDDGLRVEHVTLSEEPLPAYEAELTGGYADRLDDDEEVYSALVVGLRAYAAKNGFSSVLIGLSGGIDSAITAAIACDALGARNVYGVAMPSRYSSEHSISDAEELARRTGLNFRTVSIAPMFDAYMGALGLTGLAEENIQSRLRGTMLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTAIFRLARWRNRAARERGQTPPIPENSISKPPSAELRPDQVDTDSLPDYPVLDAILELYVDRDQGADAIVAAGFERELVTKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGASG
>CP029617.1|AZM52905.1|2235365_2237105_+|copper-oxidase
MRHETPRTASANPSAPLPLTSLASAPPAPLTSAPPSRRTLLTATAALTGAGVLTACTGSGSGGHGGGHGRGGASSGPEGYVDPAGPEVAAAEKKRGRGGRVREVRLTAAETRLDLGGGPTVRTWAYGDALPGKEVRVTAGDTLALTLANHLPQPTSLHWHGIALRNDMDGVPGLTQRDIKPGSDFTYRFAVPDPGTYWFHPHSGTQQDRGLYAPLIVEDPKEPLKYDKEWVIVLDDWVDGVDGSTPDGVLAELSKGMAEHGDHGDHGDHGDHEMSHMSHAAARTAPSPTPKTTPMPKKRTGPSRMMMGARSDLLGGDAGDVAYPHYLINGRTPKAPSQFRARPGDRIRLRLINAGGDTAFRVALGGHEMTVTHTDGFPVEHARTEALLLGMGERYDVLVTAKDGVFPLTAVAEGKKAAALAVLRTGGGAAPAASARPGELTGRLLTADKLRAAESVALPAREPDRTIRLQLTGGMAKYDWAFDKKPYSPGRRHPLRAGERVRLVFANSTSMWHPVHLHGHTFALSNVANGPRKDTAVVLPNGTLTVDFDADNPGLWMVHCHNVYHSEAGMMTVLGYRDA
>CP029617.1|AZM52904.1|2234684_2235233_+|hypothetical-protein
MARTRNRTGYGQLLLLAALVLGIFAMHTLGHPSGGHGDGHGALARSGLHAGSGLQAGSGVHAGSGVHAGHEVHAGSGVHTGHEVRTEHAAQGAHAERGGVRAEPLAGPVAEPHGGVGMGMDPLSVCLAVLGAMTLVLLVRAGLLRPGGTLGHTPAAGHLPHAPRPEAPPPRVLLSRLSVLRI
>CP029617.1|AZM52903.1|2233764_2234505_-|DUF998-domain-containing-protein
MPPRPTRPPGGGPRRPPATRATRAALAIPLLLGALLYTTWTVEAFLPTGLSPLQVYVSELAARDQPYGTFFRTADLLAGLLVLAGAVGALVWLPRRGWAVAGWAGLALFGAATAADSQLALSCAPTADAACAAREAAGDVPWTHSAHTVSSSVAVGGALLGMVLLTVAARRGAGAWPALARTGPVLVVLEVAATGWTLASVAAFEAGRGTWALGVGQRLQVLFIAVWIAVLAWSVAAAASPRERRG
>CP029617.1|AZM57570.1|2232961_2233768_-|alpha/beta-hydrolase
MTFVRIAGVPHNVDVTGSGPVCVLSAGLGLGWFDWDPVVPLLAPHRTVVRFDRPGLGLSGHARVAPTLRGEAERILRVLDGVGLGGEKATVVGHSLAGFHAEAFARLYPGRTAGLVLVDSSVEERPRVRVPRAARVRGTRACGAVLCAAGVPRALGPTLRRRAAPTRWAGVYGTGRVLRAALMEYVTYGDAAVELAALREAGPLPGGAPVIVLAAYAGGSKKWLGRQRELASGLGGEFRVARPSGHLVMRDRPGDVAEAVLAGGGGGG
>CP029617.1|AZM52902.1|2231785_2232838_+|LacI-family-transcriptional-regulator
MGERVTIRDVAARAGVSVATVSRVLAGNYPTSTASRAKVLRAVKDLDYVANAHARALAGAGRKTIAVLMFDVVGAFYAQVAQGVEMEAAQHGRLTLVASTGSDPARELALVQMMREQAAEAVVLVGGVTQDDEYRQRMARYAEVLAAAGSRLVLCGRPAPAPDVPALVIEYDNEAGAHAVTSHLLGAGHRRIALLGYQPGNTTGEDRLAGYLRALADHGVPRGDAILHGVGFGQNHGYRAMRDLLEAADGRPEFTAVFAGDDRAAAAAVIALREYGLRVPEDMSVVGYNDDPVAADITPGLTTVRIPAEEMGRTAVRRALSDTPRTGQERHLLGTHIVIRDSVRPVAGRH
>CP029617.1|AZM57569.1|2230073_2231711_+|sugar-ABC-transporter-substrate-binding-protein
MSRRTLLRSIAVGGAALAAPSVLTACSTGSGGGGSVSNAGKKAVPWPAYKPADGPAPDLAPTAEGVQAGYTKYPEKLVRAISEKPGDGKQKIRVLTITYGTPPKSAGRNGYWQAVNEALGVEVEFTVVPDADFRAKMSTLMSGDDLPDMINFGGGYVLPRESQFVKSRCADLSEHLSGDAVKEYPHLANIPTYAWEGMGRIAGRIYGLPVERAKVQGAMFINREAFDRAGYRPGMSAPDFRAMAQEASRGKRSALGASTVGFFGYLYHAMWHGAPNQWRIKGGKVTDMYGTDAFKAALEYMAKLRQDGSYNPDATSISQVDLKTQFYNGTVRSMTDGWGAAVSNAQGIKDEFTLDVAEPYAVDGVTPVYQQNRGCFGYTVIKKASKDRVKLMLRVLNWLASPFGTKEYELMHHGVEGTHFTYDKAGDPVATELGLVDSRTNLPFPYLMDAPQPLYYPGFPDLTKRLHAWQRKVVPMLVPDDHWGLMSDTYNRQSATMDQIITDGVTAVVAGRKKLSDWDGVYKKWRSQGGERSAEEFLEEYEAAH
>CP029617.1|AZM57567.1|2229147_2230026_+|ABC-transporter-permease
MRPAWREKPRFATKAAKAVAVVVVLGLILIPFLVIVSTSLASNREVVDNGGWVLWPSDPTLRAYRTILTGGIVTKALGVSVALTVLGTLFSLACTTFLAYALARPGVFGGRPVLLLILFTFLFPPGMIPAFLLVKGMGMMDTYAALIAPVLINVFNLIVLRGFFQGIPEELYEAARLDGAGDWHILWRLVLPLSKAALAVVSLFYAVSYWNAWFHASIYMESDHWPLSQVLRTYVIGGSQIADTGLSEAGLVSAPQTTQMAVLVIATVPILLVYPFLQRYFTKGVLTGAIKS
>CP029617.1|AZM57568.1|2228278_2229133_+|polysaccharide-ABC-transporter-ATP-binding-protein
MAPGLAYFLVFHYGAFIANAVAFKEYVPFDGLWASPWVGTANFERMFGDPDFWHATWNTLFIAVLQLVFFFPAPLALALLLHSLTSDLLRRFTQSVIYLPHFLSWVVVVALFQQVLGDTGLLNTTLGDAGLHTVDIIGNPDAYKPLVVIEVIWKDAGWGTIIFLAALMQVDEQLYEASAIDGAGPWRRFWHITLPSIRPIIILLLIMRLGDILSVGFEQMLLQRQSVGPEVGEVLDTFVFWQGIVGGDTGYAAAAGIFKGVVGAALVFTANRVAHRLGEQGVYK
>CP029617.1|AZM57566.1|2226953_2227928_-|hydroxyacid-dehydrogenase
MGAEVADRVFPPDLRARLAACVRLAPPVLSGSLTAPAARAVLAETEVLVTGWECPLLTPEVLAGAPRLRAVVHAAGSVKWMVTEAVWERGVVVSSAADANADPVVAFTMAAVTFGAKGALRAAAGYAAGARPSFTERVGGDARTVGVIGASRIGRRVIASLRASDAGYRVLLTDPYVTPAEAGALGVELVPLPELCRRSSIVTVHAPELPSTAGLLSEAMLRLIPDGGVVVNTARGALVDTEALARECAAGRLDAFLDVTDPEPLPAGHVLLGLPNVLVTPHVAGAQGSEVRRLGAYAVAEVERYIAGEPLRGRLLREDLARLA
>CP029617.1|AZM52907.1|2239848_2241060_-|MFS-transporter
MPLALLALAVGAFGIGTTEFVMMGLLPNVADDLHISIPAAGHLVSAYALGVVIGAPLLAAVTAKLPRRRVLIGLMVLFVVGNALSAVAPDNTSLLAARFLSGLPHGAFFGVGAVVATGLVAPERKARSVSLMFLGLTVANIVGVPVATAMGQQLGWRATFLAVSAIGLAAIAALALLVPADHGHGDAVGLRGELRALGSVPVWLALGTTVAGFGALFAAYSYITPMLTDAAGYAESSVTLLLALFGVGATAGNLLGGRLADHSLRGTLFGGLTALAVVLALFPLLMSAGWSAALAVMLLGMAAFTTGSPLQLMVMEKASAAPSLASSANQAAFNLANAGGAWIGGLALAAGFGVTSPAVTGAVLAVLGLAVAGAAYLVDRRTAPAPARLVAAGPVQRREASRR
>CP029617.1|AZM52908.1|2241252_2242281_-|hypothetical-protein
MAQAYMTETGSDGSGPERPGSRFRRLLDGWRGDPGIWKRGLITAGAAVLIALVMLFHAQIPNSVGNLGSLTETFLPWLGVFIPVLLVVAVVRKSATALIALLLPVIIWLNSFGGLISDKSGTGGDLTVATHNVNADNADPTGTARDVAASGADVIALEELTADAVPTYEKALSGQYKYHAVEGTVGLWSKYPLADTRPVDIKLGWTRAMRSTVDTPKGEVAVYVAHLPSVRVKLDAGFTANQRDNSADALGEAIADERIGKVVLLGDLNGTMNDRALNAVTSQMRSTQGAAGNGFGFSWPASFPMARIDQIMVKGVEPVSSWTLPETSSDHLPIAARVDLSS
>CP029617.1|AZM57571.1|2242501_2243053_-|TetR-family-transcriptional-regulator
MEQAIIEGVVRLLEDGVPLADLSIERIARTAGVGKATIYRRWDGKEALFVDVLRVFEEPDPELPGTSMRDDLVCLLEGLRRRGLNMRSSALLHNVFAQMKALPKLWDAYHRTVVDPRRRLTHDVLRRGVEGGELRADVDIEMANDLLVGPMLVRTIMRPDAPLDADLAERIVDTVLEGLGPAV
>CP029617.1|AZM52909.1|2243178_2244777_-|MFS-transporter
MSTTALPTQPRIPEAVHRRRWAILGVLMLSLLIVVLDNSILNVAIKTISTPEPTGLGATQGELEWAINSYTLVFAGLLFTAGLLGDRLGRKKVLIAGLVVFGIGSAFAAQSGSPVQLIVFRALMGLGAAFVMPATLAVLMNVFEREEQPKAIGIWAGGVGLAIAIGPITGGVLLDHFWWGSVFLINVPIVIVAVALMVWLVPDSRDPKPGRVDLVGVALSVVGLVLLVYGIIKGGQLADFTDPAVLGTVLAGLAVLVAFVLYEKRCDHPSVDISYFKNRVFSAAISAIALVFFALMGVTFFSVFYTQSVRGYSPLQTGLLMLPLAAAQLIFAPRARLVVDRFGVRAVCTGGLLLVMATLASFTILDADTPIWILEVIFFLMGTGMAHIMTPTSVVIMQALPREKAGSASALSNTFRQVGGALGIAVLGSVLSTAYRNGVEDKLTLLPESARHTAGESIEATLGAAARLGPRGEPLVAAANDSFLHAMHVTALWGAGVAVIGSLVVFLFLPGRTPPESRPQEKEAEPVGAAGH
>CP029617.1|AZM52910.1|2245001_2245883_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MTQLSAAQKSADAQRGPDSGKALYGGKGTRRITVRDITAAKERGEKWPMLTAYDAMTASVFDEAGIPVMLVGDSAGNCHLGYETTVPVTLDEMTMLSAAVVRGTSRALIVGDLPFGSYQEGAVQALRSATRLVKEAGVGAVKLEGGERSLAQTELLVQSGIPVMSHLGLTPQSVNTMGYRVQGRGEEAAHRLLRDAKAAQDAGAFAVVLELVPADLAAEVTRSLHIPTVGIGAGAECDAQVLVWTDMLGLTGGKMPRFVKQYADLRGVMAGAARAFAEDVVGGTFPTEEHSVR
>CP029617.1|AZM52911.1|2246682_2247702_+|daunorubicin/doxorubicin-resistance-ABC-transporter-ATP-binding-protein-DrrA
MTRINENPGGAGSAVTVRGLVKHYGETKALDGVDLDVREGTVLGVLGPNGAGKTTLVRCLSTLVTPDAGSALVAGYDVVRQPRQLRRVIGLTGQYAAVDEKLSGRENLYMIGRLLDLSRKEARSRSDGLLERFSLTEAAKRPAGTYSGGMRRRLDLAASMIGSPAVLYLDEPTTGLDPRTRNEVWAEVKRMVGDGVTVLLTTQYMEEAEQLASELTVIDRGKVIASGGIDELKAKVGGRTLRVRPADPLELRPLANALDDLGLTGLATSTVDVATGTVLVPILSDEQLTAVVGAVTARGLTIGSIATELPSLDEVFLSITGQKASAPQDARPELEEVAV
>CP029617.1|AZM52912.1|2247698_2248529_+|ABC-transporter
MSTTTLTPPLTKGETDDARISLRGHVRHTSALVRRNLLWIRQDPESMFDAVLMPIVFTLLFVYVFGGSIGQALGGGQDQYVQYVVPGMMAMMSMNIAMAVGTGFNQDFQNGIMDRFRTLPIGQGSVLFAKIVVELMRLLIATTIMMIVGVLVGFDITDWGGLLAAVGLSALFGTSIMWIFLVLGVSMKSAQSVQAMGFLVLMPLQFGSSIFAPTKSMPGWLQGFTDYNPLSSLADAARGLMVGGPVAHDVWVTVGWSALITLVMAPIAIHKFRTKS
>CP029617.1|AZM52913.1|2248568_2251919_-|AfsR-family-transcriptional-regulator
MRYRVLGPTQATHPDGTPVPVGGPRLRALLAALALRAGRPAPVPALVDDVWAADPPADAPGALQALVGRLRRTLGADAVVSADGGYRLDASPDDIDLFRFDRLAGEGRRALADGDPAKAAALLDDALALWRGEALADLPDRTAESARWQARRLDARRAGLTAALALGQAEQALPELTALCDTHPLDEPLQALRLRALRDTGRPAEALAAYEDVRREIADRLGADPGAELRALHDELLHAPQAEHPQAEHPPTERPPRVPGNLRARLTSFVGREADIDALRDDLARARLVTLLGPGGAGKTRLSQEAAESVGTGFADGVWLAELAPVEGPDDVPEAVLTALGARETVLRGVGAEEMRVMSERHGEDPVVRLVEHCAGRRMLVILDNCEHVVAAAARLADELLARCPGLTILATSREPLGVPGELLRPVEPLPEPVAVRLFAERGAAARPGFTVGEDPAAAAEICRRLDGLPLAIELAAARLRMLTPRQIADRLDDRFRLLTNGARTVLPRQQTLRAVVDWSWDLLDGPERAVLRRLSVFAGGCDLAAAEAVCAGRGSSYAGRGSSYADSDSPYDVADVLGSLVDKSLVVAAPSPMAGTGMRYRLLETVAEYAGERLDEAGDRPGAERGHLVHYREVARTTDPELRGRGQLAAVERLEAEYENLRTALRHAVAARDEQEALCLVLSLCWFWEIRGLRLEARNWARDVMALGPDPFAPPVTPAPPLNQPCTAEPPPMRPEVLEEARRGVRLLDLACMDMDMDAWRTEEAEERLRGIRDTYRPGLPQTCRVPGSLWFFAVMLGGDAELLRTTLDATVDTCRRLGYAWELATALQLRANILTNHTDWAGEARQDADEALRGFERLGDAWGMAEALAARGESRERCGEFALAAEDFEAAITYAEQLGAQSQAAVLKARLGSVLTESPDSLERGEAILRDVLANSGRAHTGEAVPAARLFLVGVLGRTGRLDEAREHISRLREEFSVVGYPVFDSFVLGLQAWLDTLGGRYARGVAVARAALEEARAPLSLMVAPQAVTVQLRIAARALAELDGGSRAADAARLLAVAEREHPAGHFPNAIEREIYENAARLARAALGTEAYEAAYAEGGGLTLDEAAALCTA
>CP029617.1|AZM52914.1|2252024_2252915_-|SAM-dependent-methyltransferase
MTSSTRLSATSADTRPRIPGPATPYQGDIARYWDGEARPVNLRLGDVDGLYHHHYGIGDVDHAALGEADDSEHEKKLIAELHRLESAQTEVLLDHLGDIGRDDTLVDAGCGRGGSMVMAHQRFGCKVEGVTLSAKQADFANRRAQELRIPDHVRARVCNMLDMPFGTGQVAGSWNNESSMYVDLHDLFAEHSRILEVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPQAVVDLTPATLPYWELRATSSLVTGIEEAFIESYKDGSFQYVLIAADRV
>CP029617.1|AZM52915.1|2252946_2254275_-|2-methylisoborneol-synthase
MPAPELTPPRSGLPEAAPFGAHVLADAAARAHDIKAAVGGPTRASSSPGPPPISPPAPPAPPALDAPPSAPVADVPAPGAALERALRGPSGLGTAGLRLFRREEPAPPSEPSAAPAQGPAVPGLYHHPVPEPDPAKVEEVSRRIKSWALDEVTLYPDDWEEQFDGFSVGRYMVACHPDAPSIDHLMVATRLMVAENAVDDCYCEDHGGSPIGLGGRLLLAHTALDPLYTTREYQPRWAQSLHADAPRRAYRSAMEYFVGTASPAQADRYRHDMARLHMGYLAEAAWAQTEYVPEVWEYLAMRQFNNFRPCPTITDTVGGYELPADLHARPDMQKVIALAGNATTIVNDLYSYTKELDAPGRHLNLPTVLADREGLSERDAYLKAVEVHNDLMNEFEAEAAALAAACPVPSVPRFLKGVAAWVDGNHYWHRTNTYRYSLPDFW

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Crispr_ID: CP029617_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029617_6

2246431-2246518

Orphan

Consensus_repeat	Method
GCGCCGGGCGCCGGGCGGGTGGGTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029617_6

>merge|CP029617|6|2246431-2246518|CRISPRCasFinder
GCGCCGGGCGCCGGGCGGGTGGGTGGGAGACATCCGGCGCGAAGCGGCGGGACAGGGCATCGCGCCGGGTGCCGGGCGGGTGGGTGGG

>CP029617|6|6|2246431-2246518|CRISPRCasFinder
GCGCCGGGCGCCGGGCGGGTGGGTGGG	AGACATCCGGCGCGAAGCGGCGGGACAGGGCATC
GCGCCGGGTGCCGGGCGGGTGGGTGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP029617.1\|AZM52907.1\|2239848_2241060_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|182234
CP029617.1\|AZM52905.1\|2235365_2237105_+\|copper-oxidase	unknown	unknown	gnl\|CDD\|259938
CP029617.1\|AZM52910.1\|2245001_2245883_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
CP029617.1\|AZM52912.1\|2247698_2248529_+\|ABC-transporter	unknown	unknown	gnl\|CDD\|366444
CP029617.1\|AZM57570.1\|2232961_2233768_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP029617.1\|AZM52914.1\|2252024_2252915_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|215135
CP029617.1\|AZM52911.1\|2246682_2247702_+\|daunorubicin/doxorubicin-resistance-ABC-transporter-ATP-binding-protein-DrrA	unknown	unknown	gnl\|CDD\|130256
CP029617.1\|AZM52909.1\|2243178_2244777_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|184957
CP029617.1\|AZM52920.1\|2258814_2259012_-\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM52916.1\|2254316_2255729_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237999
CP029617.1\|AZM52906.1\|2237264_2239025_+\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
CP029617.1\|AZM52904.1\|2234684_2235233_+\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM52908.1\|2241252_2242281_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197318
CP029617.1\|AZM52918.1\|2257598_2257913_-\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM52913.1\|2248568_2251919_-\|AfsR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226418
CP029617.1\|AZM52915.1\|2252946_2254275_-\|2-methylisoborneol-synthase	unknown	unknown	gnl\|CDD\|173835
CP029617.1\|AZM52903.1\|2233764_2234505_-\|DUF998-domain-containing-protein	unknown	unknown	gnl\|CDD\|377627
CP029617.1\|AZM57571.1\|2242501_2243053_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379883
CP029617.1\|AZM52919.1\|2258021_2258825_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|100079
CP029617.1\|AZM52917.1\|2256065_2257544_+\|monooxygenase	unknown	unknown	gnl\|CDD\|223727

Protein	Function_ID	Function_description	E-value
CP029617.1\|AZM52907.1\|2239848_2241060_-\|MFS-transporter	gnl\|CDD\|182234	PRK10091, PRK10091, MFS transport protein AraJ; Provisional.	5.25434e-91
CP029617.1\|AZM52905.1\|2235365_2237105_+\|copper-oxidase	gnl\|CDD\|259938	cd13870, CuRO_2_CopA_like_1, The second cupredoxin domain of CopA copper resistance protein like family. The members of this family are copper resistance protein (CopA) homologs. CopA is multicopper oxidase (MCO) related to laccase and L-ascorbate oxidase, both copper-containing enzymes. CopA is involved in copper resistance in bacteria. CopA mutant causes a loss of function, including copper tolerance and oxidase activity, and copA transcription is inducible in the presence of copper. Although MCOs have diverse functions, majority of them have three cupredoxin domain repeats that include one mononuclear and one trinuclear copper center. The copper ions are bound in several sites: Type 1, Type 2, and/or Type 3. The ensemble of types 2 and 3 copper is called a trinuclear cluster. MCOs oxidize their substrate by accepting electrons at a mononuclear copper center and transferring them to the active site trinuclear copper center. The cupredoxin domain 2 of 3-domain MCOs has lost the ability to bind copper.	1.54364e-56
CP029617.1\|AZM52910.1\|2245001_2245883_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	8.11159e-157
CP029617.1\|AZM52912.1\|2247698_2248529_+\|ABC-transporter	gnl\|CDD\|366444	pfam01061, ABC2_membrane, ABC-2 type transporter.	3.88814e-22
CP029617.1\|AZM52914.1\|2252024_2252915_-\|SAM-dependent-methyltransferase	gnl\|CDD\|215135	PLN02244, PLN02244, tocopherol O-methyltransferase.	2.99999e-15
CP029617.1\|AZM52911.1\|2246682_2247702_+\|daunorubicin/doxorubicin-resistance-ABC-transporter-ATP-binding-protein-DrrA	gnl\|CDD\|130256	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	1.25226e-138
CP029617.1\|AZM52909.1\|2243178_2244777_-\|MFS-transporter	gnl\|CDD\|184957	PRK14995, PRK14995, SmvA family efflux MFS transporter.	9.20313e-79
CP029617.1\|AZM52916.1\|2254316_2255729_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|237999	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels.	9.50359e-17
CP029617.1\|AZM52906.1\|2237264_2239025_+\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
CP029617.1\|AZM52919.1\|2258021_2258825_+\|hypothetical-protein	gnl\|CDD\|100079	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.	4.92852e-44
CP029617.1\|AZM52908.1\|2241252_2242281_-\|hypothetical-protein	gnl\|CDD\|197318	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds; their substrates range from nucleic acids to phospholipids and perhaps, proteins.	8.64064e-24
CP029617.1\|AZM52913.1\|2248568_2251919_-\|AfsR-family-transcriptional-regulator	gnl\|CDD\|226418	COG3903, COG3903, Predicted ATPase [General function prediction only].	8.41953e-63
CP029617.1\|AZM52903.1\|2233764_2234505_-\|DUF998-domain-containing-protein	gnl\|CDD\|377627	pfam06197, DUF998, Protein of unknown function (DUF998). Family of conserved archaeal proteins.	4.86139e-09
CP029617.1\|AZM57570.1\|2232961_2233768_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	6.88668e-12
CP029617.1\|AZM57571.1\|2242501_2243053_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|379883	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal. This family of bacterial transcriptional repressors is characterized by the short approximately 50 amino acid stretch of residues constituting the helix-turn-helix DNA binding motif, around the YRFhY motif. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. Another target protein is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	4.8277e-19
CP029617.1\|AZM52917.1\|2256065_2257544_+\|monooxygenase	gnl\|CDD\|223727	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion].	2.40493e-14
CP029617.1\|AZM52915.1\|2252946_2254275_-\|2-methylisoborneol-synthase	gnl\|CDD\|173835	cd00687, Terpene_cyclase_nonplant_C1, Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in fungi, bacteria and Dictyostelium.	7.1728e-88

>CP029617.1|AZM52910.1|2245001_2245883_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MTQLSAAQKSADAQRGPDSGKALYGGKGTRRITVRDITAAKERGEKWPMLTAYDAMTASVFDEAGIPVMLVGDSAGNCHLGYETTVPVTLDEMTMLSAAVVRGTSRALIVGDLPFGSYQEGAVQALRSATRLVKEAGVGAVKLEGGERSLAQTELLVQSGIPVMSHLGLTPQSVNTMGYRVQGRGEEAAHRLLRDAKAAQDAGAFAVVLELVPADLAAEVTRSLHIPTVGIGAGAECDAQVLVWTDMLGLTGGKMPRFVKQYADLRGVMAGAARAFAEDVVGGTFPTEEHSVR
>CP029617.1|AZM52909.1|2243178_2244777_-|MFS-transporter
MSTTALPTQPRIPEAVHRRRWAILGVLMLSLLIVVLDNSILNVAIKTISTPEPTGLGATQGELEWAINSYTLVFAGLLFTAGLLGDRLGRKKVLIAGLVVFGIGSAFAAQSGSPVQLIVFRALMGLGAAFVMPATLAVLMNVFEREEQPKAIGIWAGGVGLAIAIGPITGGVLLDHFWWGSVFLINVPIVIVAVALMVWLVPDSRDPKPGRVDLVGVALSVVGLVLLVYGIIKGGQLADFTDPAVLGTVLAGLAVLVAFVLYEKRCDHPSVDISYFKNRVFSAAISAIALVFFALMGVTFFSVFYTQSVRGYSPLQTGLLMLPLAAAQLIFAPRARLVVDRFGVRAVCTGGLLLVMATLASFTILDADTPIWILEVIFFLMGTGMAHIMTPTSVVIMQALPREKAGSASALSNTFRQVGGALGIAVLGSVLSTAYRNGVEDKLTLLPESARHTAGESIEATLGAAARLGPRGEPLVAAANDSFLHAMHVTALWGAGVAVIGSLVVFLFLPGRTPPESRPQEKEAEPVGAAGH
>CP029617.1|AZM57571.1|2242501_2243053_-|TetR-family-transcriptional-regulator
MEQAIIEGVVRLLEDGVPLADLSIERIARTAGVGKATIYRRWDGKEALFVDVLRVFEEPDPELPGTSMRDDLVCLLEGLRRRGLNMRSSALLHNVFAQMKALPKLWDAYHRTVVDPRRRLTHDVLRRGVEGGELRADVDIEMANDLLVGPMLVRTIMRPDAPLDADLAERIVDTVLEGLGPAV
>CP029617.1|AZM52908.1|2241252_2242281_-|hypothetical-protein
MAQAYMTETGSDGSGPERPGSRFRRLLDGWRGDPGIWKRGLITAGAAVLIALVMLFHAQIPNSVGNLGSLTETFLPWLGVFIPVLLVVAVVRKSATALIALLLPVIIWLNSFGGLISDKSGTGGDLTVATHNVNADNADPTGTARDVAASGADVIALEELTADAVPTYEKALSGQYKYHAVEGTVGLWSKYPLADTRPVDIKLGWTRAMRSTVDTPKGEVAVYVAHLPSVRVKLDAGFTANQRDNSADALGEAIADERIGKVVLLGDLNGTMNDRALNAVTSQMRSTQGAAGNGFGFSWPASFPMARIDQIMVKGVEPVSSWTLPETSSDHLPIAARVDLSS
>CP029617.1|AZM52907.1|2239848_2241060_-|MFS-transporter
MPLALLALAVGAFGIGTTEFVMMGLLPNVADDLHISIPAAGHLVSAYALGVVIGAPLLAAVTAKLPRRRVLIGLMVLFVVGNALSAVAPDNTSLLAARFLSGLPHGAFFGVGAVVATGLVAPERKARSVSLMFLGLTVANIVGVPVATAMGQQLGWRATFLAVSAIGLAAIAALALLVPADHGHGDAVGLRGELRALGSVPVWLALGTTVAGFGALFAAYSYITPMLTDAAGYAESSVTLLLALFGVGATAGNLLGGRLADHSLRGTLFGGLTALAVVLALFPLLMSAGWSAALAVMLLGMAAFTTGSPLQLMVMEKASAAPSLASSANQAAFNLANAGGAWIGGLALAAGFGVTSPAVTGAVLAVLGLAVAGAAYLVDRRTAPAPARLVAAGPVQRREASRR
>CP029617.1|AZM52906.1|2237264_2239025_+|NAD+-synthase
MPQLRLALNQIDSTVGDLAGNAEAIVHWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVHASRQALHALAARLKDEGFGELPVVVGYLDRTEEAKPRYGQPAGAPRNAAAVLHRGEVALTFSKHHLPNYGVFDEFRYFVPGETLPIVRVHGVDVALAICEDLWQDGGRVPATRSAGAGLLLSINASPYEQNKDDQRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDKDGEVIARAPQFAEGCVVLDLDLPAAAPVPPSGVVDDGLRVEHVTLSEEPLPAYEAELTGGYADRLDDDEEVYSALVVGLRAYAAKNGFSSVLIGLSGGIDSAITAAIACDALGARNVYGVAMPSRYSSEHSISDAEELARRTGLNFRTVSIAPMFDAYMGALGLTGLAEENIQSRLRGTMLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTAIFRLARWRNRAARERGQTPPIPENSISKPPSAELRPDQVDTDSLPDYPVLDAILELYVDRDQGADAIVAAGFERELVTKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGASG
>CP029617.1|AZM52905.1|2235365_2237105_+|copper-oxidase
MRHETPRTASANPSAPLPLTSLASAPPAPLTSAPPSRRTLLTATAALTGAGVLTACTGSGSGGHGGGHGRGGASSGPEGYVDPAGPEVAAAEKKRGRGGRVREVRLTAAETRLDLGGGPTVRTWAYGDALPGKEVRVTAGDTLALTLANHLPQPTSLHWHGIALRNDMDGVPGLTQRDIKPGSDFTYRFAVPDPGTYWFHPHSGTQQDRGLYAPLIVEDPKEPLKYDKEWVIVLDDWVDGVDGSTPDGVLAELSKGMAEHGDHGDHGDHGDHEMSHMSHAAARTAPSPTPKTTPMPKKRTGPSRMMMGARSDLLGGDAGDVAYPHYLINGRTPKAPSQFRARPGDRIRLRLINAGGDTAFRVALGGHEMTVTHTDGFPVEHARTEALLLGMGERYDVLVTAKDGVFPLTAVAEGKKAAALAVLRTGGGAAPAASARPGELTGRLLTADKLRAAESVALPAREPDRTIRLQLTGGMAKYDWAFDKKPYSPGRRHPLRAGERVRLVFANSTSMWHPVHLHGHTFALSNVANGPRKDTAVVLPNGTLTVDFDADNPGLWMVHCHNVYHSEAGMMTVLGYRDA
>CP029617.1|AZM52904.1|2234684_2235233_+|hypothetical-protein
MARTRNRTGYGQLLLLAALVLGIFAMHTLGHPSGGHGDGHGALARSGLHAGSGLQAGSGVHAGSGVHAGHEVHAGSGVHTGHEVRTEHAAQGAHAERGGVRAEPLAGPVAEPHGGVGMGMDPLSVCLAVLGAMTLVLLVRAGLLRPGGTLGHTPAAGHLPHAPRPEAPPPRVLLSRLSVLRI
>CP029617.1|AZM52903.1|2233764_2234505_-|DUF998-domain-containing-protein
MPPRPTRPPGGGPRRPPATRATRAALAIPLLLGALLYTTWTVEAFLPTGLSPLQVYVSELAARDQPYGTFFRTADLLAGLLVLAGAVGALVWLPRRGWAVAGWAGLALFGAATAADSQLALSCAPTADAACAAREAAGDVPWTHSAHTVSSSVAVGGALLGMVLLTVAARRGAGAWPALARTGPVLVVLEVAATGWTLASVAAFEAGRGTWALGVGQRLQVLFIAVWIAVLAWSVAAAASPRERRG
>CP029617.1|AZM57570.1|2232961_2233768_-|alpha/beta-hydrolase
MTFVRIAGVPHNVDVTGSGPVCVLSAGLGLGWFDWDPVVPLLAPHRTVVRFDRPGLGLSGHARVAPTLRGEAERILRVLDGVGLGGEKATVVGHSLAGFHAEAFARLYPGRTAGLVLVDSSVEERPRVRVPRAARVRGTRACGAVLCAAGVPRALGPTLRRRAAPTRWAGVYGTGRVLRAALMEYVTYGDAAVELAALREAGPLPGGAPVIVLAAYAGGSKKWLGRQRELASGLGGEFRVARPSGHLVMRDRPGDVAEAVLAGGGGGG
>CP029617.1|AZM52911.1|2246682_2247702_+|daunorubicin/doxorubicin-resistance-ABC-transporter-ATP-binding-protein-DrrA
MTRINENPGGAGSAVTVRGLVKHYGETKALDGVDLDVREGTVLGVLGPNGAGKTTLVRCLSTLVTPDAGSALVAGYDVVRQPRQLRRVIGLTGQYAAVDEKLSGRENLYMIGRLLDLSRKEARSRSDGLLERFSLTEAAKRPAGTYSGGMRRRLDLAASMIGSPAVLYLDEPTTGLDPRTRNEVWAEVKRMVGDGVTVLLTTQYMEEAEQLASELTVIDRGKVIASGGIDELKAKVGGRTLRVRPADPLELRPLANALDDLGLTGLATSTVDVATGTVLVPILSDEQLTAVVGAVTARGLTIGSIATELPSLDEVFLSITGQKASAPQDARPELEEVAV
>CP029617.1|AZM52912.1|2247698_2248529_+|ABC-transporter
MSTTTLTPPLTKGETDDARISLRGHVRHTSALVRRNLLWIRQDPESMFDAVLMPIVFTLLFVYVFGGSIGQALGGGQDQYVQYVVPGMMAMMSMNIAMAVGTGFNQDFQNGIMDRFRTLPIGQGSVLFAKIVVELMRLLIATTIMMIVGVLVGFDITDWGGLLAAVGLSALFGTSIMWIFLVLGVSMKSAQSVQAMGFLVLMPLQFGSSIFAPTKSMPGWLQGFTDYNPLSSLADAARGLMVGGPVAHDVWVTVGWSALITLVMAPIAIHKFRTKS
>CP029617.1|AZM52913.1|2248568_2251919_-|AfsR-family-transcriptional-regulator
MRYRVLGPTQATHPDGTPVPVGGPRLRALLAALALRAGRPAPVPALVDDVWAADPPADAPGALQALVGRLRRTLGADAVVSADGGYRLDASPDDIDLFRFDRLAGEGRRALADGDPAKAAALLDDALALWRGEALADLPDRTAESARWQARRLDARRAGLTAALALGQAEQALPELTALCDTHPLDEPLQALRLRALRDTGRPAEALAAYEDVRREIADRLGADPGAELRALHDELLHAPQAEHPQAEHPPTERPPRVPGNLRARLTSFVGREADIDALRDDLARARLVTLLGPGGAGKTRLSQEAAESVGTGFADGVWLAELAPVEGPDDVPEAVLTALGARETVLRGVGAEEMRVMSERHGEDPVVRLVEHCAGRRMLVILDNCEHVVAAAARLADELLARCPGLTILATSREPLGVPGELLRPVEPLPEPVAVRLFAERGAAARPGFTVGEDPAAAAEICRRLDGLPLAIELAAARLRMLTPRQIADRLDDRFRLLTNGARTVLPRQQTLRAVVDWSWDLLDGPERAVLRRLSVFAGGCDLAAAEAVCAGRGSSYAGRGSSYADSDSPYDVADVLGSLVDKSLVVAAPSPMAGTGMRYRLLETVAEYAGERLDEAGDRPGAERGHLVHYREVARTTDPELRGRGQLAAVERLEAEYENLRTALRHAVAARDEQEALCLVLSLCWFWEIRGLRLEARNWARDVMALGPDPFAPPVTPAPPLNQPCTAEPPPMRPEVLEEARRGVRLLDLACMDMDMDAWRTEEAEERLRGIRDTYRPGLPQTCRVPGSLWFFAVMLGGDAELLRTTLDATVDTCRRLGYAWELATALQLRANILTNHTDWAGEARQDADEALRGFERLGDAWGMAEALAARGESRERCGEFALAAEDFEAAITYAEQLGAQSQAAVLKARLGSVLTESPDSLERGEAILRDVLANSGRAHTGEAVPAARLFLVGVLGRTGRLDEAREHISRLREEFSVVGYPVFDSFVLGLQAWLDTLGGRYARGVAVARAALEEARAPLSLMVAPQAVTVQLRIAARALAELDGGSRAADAARLLAVAEREHPAGHFPNAIEREIYENAARLARAALGTEAYEAAYAEGGGLTLDEAAALCTA
>CP029617.1|AZM52914.1|2252024_2252915_-|SAM-dependent-methyltransferase
MTSSTRLSATSADTRPRIPGPATPYQGDIARYWDGEARPVNLRLGDVDGLYHHHYGIGDVDHAALGEADDSEHEKKLIAELHRLESAQTEVLLDHLGDIGRDDTLVDAGCGRGGSMVMAHQRFGCKVEGVTLSAKQADFANRRAQELRIPDHVRARVCNMLDMPFGTGQVAGSWNNESSMYVDLHDLFAEHSRILEVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPQAVVDLTPATLPYWELRATSSLVTGIEEAFIESYKDGSFQYVLIAADRV
>CP029617.1|AZM52915.1|2252946_2254275_-|2-methylisoborneol-synthase
MPAPELTPPRSGLPEAAPFGAHVLADAAARAHDIKAAVGGPTRASSSPGPPPISPPAPPAPPALDAPPSAPVADVPAPGAALERALRGPSGLGTAGLRLFRREEPAPPSEPSAAPAQGPAVPGLYHHPVPEPDPAKVEEVSRRIKSWALDEVTLYPDDWEEQFDGFSVGRYMVACHPDAPSIDHLMVATRLMVAENAVDDCYCEDHGGSPIGLGGRLLLAHTALDPLYTTREYQPRWAQSLHADAPRRAYRSAMEYFVGTASPAQADRYRHDMARLHMGYLAEAAWAQTEYVPEVWEYLAMRQFNNFRPCPTITDTVGGYELPADLHARPDMQKVIALAGNATTIVNDLYSYTKELDAPGRHLNLPTVLADREGLSERDAYLKAVEVHNDLMNEFEAEAAALAAACPVPSVPRFLKGVAAWVDGNHYWHRTNTYRYSLPDFW
>CP029617.1|AZM52916.1|2254316_2255729_-|Crp/Fnr-family-transcriptional-regulator
MTVDSSPDTRLELPRQSSLGTAAARNLTTTTKSAPQMQEITSRWLLRMLPWVETKGGAYRVNRRLSYTVGDGSVEFVQDGADVRVIPRELGELAPLRGFDDVEVLTALADRCVQRDFRSGERLVERGRPAGELYLIAHGRIGQTTVGNYGGEVALDVLADGDHFGAHALLDEDARWEQTATAETPGTLLTLSRADLAAVLSTAPSLRDHLEEFKSRSRRRQNHRGEAEIAMSAGHTGEHELPGAFVDYELKPREYELSVAQTILRVHTRVADLYNGPMNQTEEQLRLTIEALRERQEHELINNREFGLLHNADFKQRIQPHSGPPTPDDLDDLLCRRRGSKFFLAHPRTIAAIGREFNARGLYPDHVDLGGQQVPAWRGVPILPCNKIPITEERTSSILCMRTGEENQGVIGLHQTGLPEEFEPGLSVRFMGLDEKAITSYLVSAYYSAAILVPDAVGVLENVQIAHWPS
>CP029617.1|AZM52917.1|2256065_2257544_+|monooxygenase
MAWGRKHDWARSGSVTAAAILRCGLADSGLGNGTSMAKNQHNSSPRARWERAVVIGGGYAGLVTARVLADHFDEVLVLERDPLRSDTGVHPHVPQGYHAHALLARGGDALEGLFPGLREELADVGAPVFDYGERISFLLPTGYAPTDPVGVPVQSFTRDELERRLRQRVSALAAVRLLAATHCETVTASAPGRLDRVRYRAHGADESTEVTADLVVDASGRSTSVDRWLADAKLPVSARTVVRAKITYTSACYVRPPQDQQDFDVAYQMTFAPGVPRGGVVLAVEHHRWMYSLFGFDQQVPPTDDEGYLDFAHSLGNPRLAEQIKRGTRQGEIHRYTNPGNEWRLHHKNPRWPERLIAVGDSLCVFNPVYGQGLTVAALEAELLGRLLRRRTAGASGLDGLSRAYHRAAARVVHVPWTMATSSDLMWAPTGQPIPARFAHWYNQQIFALAVHDPGIWARFVRVLNMTAAPSLLFRPAVLAKVLRRALTRRAS
>CP029617.1|AZM52918.1|2257598_2257913_-|hypothetical-protein
MAAENAESVEHTEDGHFIIVKGRRWRATDPGLAEDVKERLVHHLMAARRAVAAARDDEAARKAARSRVQLAKTGLGERGTAWWELPLAERRARADDCLRRLEAD
>CP029617.1|AZM52919.1|2258021_2258825_+|hypothetical-protein
MTTAPLRSSDRRISPVFLGIAAVTAVSGWAAWTGFASNPGLAVFLFVTAAWIVSLCLHEYAHARTALHSGDISIGAKGYLTLNPLKYTHALLSVVLPVLFVIMGGIGLPGGAVFIERGRIRGRWRHSLISAAGPLTNVLFALVCTAPFWLDALDGVPDAFRYALAFLALLQVTAAILNSLPIPGLDGYGVIEPWLSHGIRRQVEPFAPFGLLAVFAVLWIPEVNHAFFDAIDAILRGLGVSDWDSYWGQELYRFWEGSGEVPPAISS
>CP029617.1|AZM52920.1|2258814_2259012_-|hypothetical-protein
MPRLALYALVVCALAVVAAVLSFAQGSWLGVVWVLLAGLSSNMAWFYLRRAKLQRDAAVPTGPTN

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Crispr_ID: CP029617_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029617_7

2475662-2475752

Orphan

Consensus_repeat	Method
ACCCGCAGAGACCACACGACCGGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029617_7

>merge|CP029617|7|2475662-2475752|CRISPRCasFinder
ACCCGCAGAGACCACACGACCGGCCCTCCCAGGGGCGCGGGGAACGGCGCGACCAGCCACGCCCCACCCGCAGGGACCACACGACCGGCCC

>CP029617|7|7|2475662-2475752|CRISPRCasFinder
ACCCGCAGAGACCACACGACCGGCCC	TCCCAGGGGCGCGGGGAACGGCGCGACCAGCCACGCCCC
ACCCGCAGGGACCACACGACCGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP029617.1\|AZM53071.1\|2467458_2468364_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176115
CP029617.1\|AZM53076.1\|2475946_2476984_+\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|336482
CP029617.1\|AZM53083.1\|2487239_2488400_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235010
CP029617.1\|AZM53080.1\|2483749_2484814_-\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM53067.1\|2464098_2464836_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
CP029617.1\|AZM53074.1\|2470212_2471706_+\|acyl-CoA-synthetase	unknown	unknown	gnl\|CDD\|236096
CP029617.1\|AZM53078.1\|2481316_2482141_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270256
CP029617.1\|AZM53070.1\|2466783_2467389_+\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM53068.1\|2465758_2465986_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225391
CP029617.1\|AZM53069.1\|2465999_2466803_+\|FkbM-family-methyltransferase	unknown	unknown	gnl\|CDD\|273628
CP029617.1\|AZM57588.1\|2464853_2465762_+\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM53073.1\|2469026_2470118_+\|putative-sulfate-exporter-family-transporter	unknown	unknown	gnl\|CDD\|225411
CP029617.1\|AZM53084.1\|2488396_2488846_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366181
CP029617.1\|AZM53072.1\|2468457_2469027_+\|cysteine-dioxygenase	unknown	unknown	gnl\|CDD\|380416
CP029617.1\|AZM57589.1\|2482157_2482556_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133390
CP029617.1\|AZM53082.1\|2486068_2487175_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235010
CP029617.1\|AZM53079.1\|2482694_2483735_+\|ribonuclease-BN	unknown	unknown	gnl\|CDD\|377085
CP029617.1\|AZM53075.1\|2471785_2475439_-\|peptidase-S8	unknown	unknown	gnl\|CDD\|173815
CP029617.1\|AZM53077.1\|2479132_2481166_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226361
CP029617.1\|AZM53081.1\|2484803_2486072_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340863

Protein	Function_ID	Function_description	E-value
CP029617.1\|AZM53071.1\|2467458_2468364_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176115	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.85582e-62
CP029617.1\|AZM53076.1\|2475946_2476984_+\|rod-shape-determining-protein	gnl\|CDD\|336482	pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl.	2.99342e-141
CP029617.1\|AZM53083.1\|2487239_2488400_-\|hypothetical-protein	gnl\|CDD\|235010	PRK02186, PRK02186, argininosuccinate lyase; Provisional.	7.64963e-12
CP029617.1\|AZM53067.1\|2464098_2464836_+\|SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.08573e-21
CP029617.1\|AZM53074.1\|2470212_2471706_+\|acyl-CoA-synthetase	gnl\|CDD\|236096	PRK07787, PRK07787, acyl-CoA synthetase; Validated.	0
CP029617.1\|AZM53078.1\|2481316_2482141_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270256	cd13538, PBP2_ModA_like_1, Substrate binding domain of putative molybdate-binding protein;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. Molybdate transport system is comprised of a periplasmic binding protein, an integral membrane protein, and an energizer protein. These three proteins are coded by modA, modB, and modC genes, respectively. ModA proteins serve as initial receptors in the ABC transport of molybdate mostly in eubacteria and archaea. After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.10641e-78
CP029617.1\|AZM53084.1\|2488396_2488846_-\|hypothetical-protein	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.58674e-13
CP029617.1\|AZM53068.1\|2465758_2465986_+\|hypothetical-protein	gnl\|CDD\|225391	COG2835, COG2835, Uncharacterized conserved protein [Function unknown].	4.52586e-11
CP029617.1\|AZM53069.1\|2465999_2466803_+\|FkbM-family-methyltransferase	gnl\|CDD\|273628	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.	5.36355e-23
CP029617.1\|AZM53073.1\|2469026_2470118_+\|putative-sulfate-exporter-family-transporter	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	2.72021e-67
CP029617.1\|AZM53072.1\|2468457_2469027_+\|cysteine-dioxygenase	gnl\|CDD\|380416	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain. This family contains cysteine dioxygenase (CDO; EC 1.13.11.20), which catalyzes the conversion of cysteine to cysteine sulfinic acid, the first step in the biosynthesis of essential oxidized cysteine metabolites such as sulfate, hypotaurine, and taurine. CDO also plays an important role in the regulation of intracellular cysteine levels in mammals; CDO expression is altered in cancer cells, and abnormal or deficient CDO activity has been linked to Parkinson's disease, Alzheimer's disease, and rheumatoid arthritis. CDO is an iron-dependent thiol dioxygenase that uses molecular oxygen to oxidize the sulfhydryl group of cysteine to generate cysteine sulfinic acid. The CDO active site contains an amino acid-derived cofactor. These enzymes are found in prokaryotes as well as eukaryotes and belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	7.07197e-30
CP029617.1\|AZM57589.1\|2482157_2482556_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133390	cd04762, HTH_MerR-trunc, Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.	3.7376e-15
CP029617.1\|AZM53082.1\|2486068_2487175_-\|hypothetical-protein	gnl\|CDD\|235010	PRK02186, PRK02186, argininosuccinate lyase; Provisional.	1.51512e-05
CP029617.1\|AZM53079.1\|2482694_2483735_+\|ribonuclease-BN	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	1.95762e-64
CP029617.1\|AZM53075.1\|2471785_2475439_-\|peptidase-S8	gnl\|CDD\|173815	cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	5.5865e-80
CP029617.1\|AZM53077.1\|2479132_2481166_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.81702e-83
CP029617.1\|AZM53081.1\|2484803_2486072_-\|hypothetical-protein	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.21537e-12

>CP029617.1|AZM53075.1|2471785_2475439_-|peptidase-S8
MDRRAPARRRAGLVGVGTLVFALLPGGPGATAPYGEPAAAAPVAHTVTLITGDQVTVTRLPGGRRTVAVARAPGADGAVRSQLAGGRLSVVPDEARPYLRSGVLDPRLFDVTGLIRQGAADHAGAPLPLIVTYEEGGGRRARSLPRGVVKVRSLPSVAGLAVSAAKPDALWRAIRDEASGIDKVWLDGRVRADMARSNEQMGTPHAWAAGLTGKGVKVAVLDTGVDGDHPDLAGRVAESRSFIPGEEVADRNGHGTHVASTVGGSGAASEGRKERGVAPGASLAVGKVLGDDGFGSESEVIAGMEWAAKEADAEVVSMSLGSQEPSDGTDPMATAVNTLSEETGALFVVAAGNAGTPSSIGSPGAADSALTVGAVDSHDRAAPFTSRGPRTGDHALKPDLSAPGVDILAARSGLTGGEGFYTEMSGTSMAAPHVAGVAALLAEKHPDWTGARLKNALMSTSRQLDASTYELGAGRVSVPDAVGADITASGSVDLGFHGWPYEGNEPARRTVTYANSSGAGVELSLRVRGGGDGAVGLGDTTLTVPAHGTASTTVTGDGTKAPVGNTSGAIVASAGGKEVAHTAFGLVKEAERYTLTVHVKDRDGAAAPADLVVQRLAEGADPFPAAVGDSGALKLRLPPGTYALTSFLDVRGAHGEDSLGLGFLAEPQISLDRDREVTLDGRELRETRAEVQRRTATRQLLMEYDRKGGGAELQGAVQVPVKYDSVFAAPTSEVTEGSFEYRTVWRLGKPLVDVKGLREAVAQPGGTIAEGRRKWALVDAGDGTPAAYAGKDVRGKAAVVRRTDAVTPERLGQAAQDAGVSALFVTDDRAGRLHAWFGGDDNADRPLQIATVDAADGARLIATAEAGERIESTGTVNTPYVYDLSEGHEGAVPHDLTYRPGKRELAVLDTKFHAVRPARGDEFRYSITDAFPIGFGFQEKVDYPATRTEYVSTGAGLLWHESVSTGPGALEQRGGLVSYKGGERTGLNWFKPVLRPWLGTGLGWGQTRRGDTLEFNVPGWGDSGPDHTGLGDVWSEETMTQVSEVFVEGVSVDRREGAGVYVRGADPAERTYKVVTDTTLDPARWKLATKGHAEWTFRSKETPADRKTPLPLLNLGFDVDTSLAGEVRGGRTVPVGIFAEYVKGAGGGALGGGELSVSYDEGESWRRVALGRGGEKAYWGGELKVPAGAGSVSFRASVSDDRGGSVSQEIIRAVGVR
>CP029617.1|AZM53074.1|2470212_2471706_+|acyl-CoA-synthetase
MDPLFPTLAAPHARNSAAGEALRFGERALSHDELATVARALAGRLGGADRVAVWATPSLETAVGVVAALLAGVPAVPLNPKSGSGELAHIVADSAPSLILAEPGAELPSALADLPRIDVTTDVGAALTDPGAPETPEAPEAPEAPEAPALIVYTSGTTGPPKGAVLPRRAIATTLDALADAWRWTADDVLVHGLPLFHVHGLILGVLGPLRRGGSVRHLGRFSTEGVARELGSGATMLFGVPTMYHRIAEALPDEPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGDPRAGTVGVPLPGVDLRLVDEAGEPVPADDPEAVGEIQVRGPNLFTEYLNRPDATAEAFAPGGWFRTGDMALRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHAGVREAAVTGEPDPDLGERIVAWIVPTDPHSPPPAEELASHVADRLAPHKRPRAVRYLDALPRNDMGKIMKRALPGRG
>CP029617.1|AZM53073.1|2469026_2470118_+|putative-sulfate-exporter-family-transporter
MALLGERPKSRLTAPASASPVTRPPGKLPGLALATAGVGVAWGVHHLVPGVPMLTAAVVLGIAAAHVPGAAHHFVRGPGKAGLTFAAKRLMRVGVVLLGLKLGLEDVLGLGWASVVMVLGVVAVTFFGTWWLGRRMGLRGDQPLLIATGYSICGASAIGAVSEVSESDERDTATSVALVTLCGTLAIAVLPLLQHPLGLTDAEFGRWVGASVHDVGQVVATAQTAGSGALGDAVLVKLMRVALLAPLVAAVALSVRARSRSGAAGRAGTAEGAGSAKRPPLVPLFVVGFLAMVALRTTGWLPGGAIDAAQTAQELLLAAALFGLGSAVDLPSLTRTGGRVAALGLASWGVIAGISYVGVVLTY
>CP029617.1|AZM53072.1|2468457_2469027_+|cysteine-dioxygenase
MTTPTTYRPARTTARLDTLVADVREAVGRGLPPDLTAYLVGERLAPHLGAADLLTAEQCEGDPERYRQHVLHAEQDGSFSIVALVWLPGQHTSVHDHVSWCVTGVHEGEEHERRYRLVPATEPGGTARLIATDDVVNPQGAVCGFAPPGDIHRVWNACGTRAISIHVYGADIARLGSSVRRVYALPADR
>CP029617.1|AZM53071.1|2467458_2468364_+|LysR-family-transcriptional-regulator
MFDSRHIKTFHEVVRAGSYSAAARSLGYTQPAITQQMKALERSVGTPLFTRVGRRMRLTEAGEALSRHAGIILDDISAAQQQMNAITRLRSGRVRVCAFPSANATLIPEALARLASGHPGVRVELLEDEPPESLRRVVRGECDITLAFTYPGLHEEVPEELAEIPLMEDQLTVLLPTGHPMARRRSVKLAELAEERWIAGCPRCRANFLHECAELGFAPDIAFTTDDNLVVQSLVAEGLGIAMMPGLVLNFLCHRKVTGRALDPASRRKVSAYVLKDHLRIPATALVLDVLKTVAANRVGC
>CP029617.1|AZM53070.1|2466783_2467389_+|hypothetical-protein
MEHMPASSASAPFTPLDFQLVLLRRMADHNADLVEDARRALGASLAQMREANRRWQAMTRGARSRGAAARYRSVLGAPESTTRRTIGDLECEALLWPLPLWPDLRFEVLRAPNGAVWNEWLVRAPGSPGPGLRTLDDLTPWSCTVDEAARAFAPARPMEGTAPTRWRLTFEAPDAGGERRRCVAEFTWGLLQRVDTAPVSR
>CP029617.1|AZM53069.1|2465999_2466803_+|FkbM-family-methyltransferase
MTLAARLAPYVPDRLIASLARLVYPRFEPELARLADLCPPDCGTAVDVGGWYGPWSRRLASRARRVVTVEPVPRLARLLDASTPGNVRVIQAAATDRPGTARLWLPHGDNGERGVSSLIRRDIHATAVDVPCMTLDGLGLRDVHFVKIDVDGNELPVLRGAHELITRDHPAIFIELESRIQPIAPIVDLLTRHHGYRGWVLPHDTWLPLASFDLEAHQRDTSYVVTQGLLRRVLTPRHPRYVNSVLFLPEGRRPGPRTVRDDGAHAR
>CP029617.1|AZM53068.1|2465758_2465986_+|hypothetical-protein
MNPDDPLLKILACPLDKGPLHLLAPAEPLVPEEALYNPRLRRRYPVIDGIPQLLPSSGEQVPEDEHEQLLKRISP
>CP029617.1|AZM57588.1|2464853_2465762_+|hypothetical-protein
MAAALLANVLYSTGFVLEKRALTAMPSVSVRNPARLLRQVLGSPLWIGGSLALAAGFGAQLAVYRTLPIAAAQGIFVSGLVLLLLLSSVLLGERTSGRERYAVAAILLALLMVVLSLNEENDTVSRGAPVPLVLTVCLPSLAAGLWLYGAAERRAKHRHRMPSAGVEYGVAVGLLYGVSSLAIKGVSSHLTTQGIGGALVDLLRSPYPYLLLFTGAFGLIMSQAALQRCRASLIVPVCTTVTALFTAVLGTLAFGEALPDEPVRLALRIAGTVLAVSVLLAMPKHDGPPPQSTPPPKELTSG
>CP029617.1|AZM53067.1|2464098_2464836_+|SAM-dependent-methyltransferase
MTATATKRPAGLRDFYEDPRVPVASGDARTLRQARILADALGPATARAATVLDIGCGDGSAAATAAPLLAGHRVIGVDWSQDALKRAHAHLPYVVRGELTDGGLPFADGAADAVLFSEVIEHLVDPDSALDELRRVLRPGGHLMLSTPNLAAWYNRGLLLAGVQPVFSEVSLRGIHGRPGKEVVGHLRLYTARALREFVAASGFTVVRMSGAPFHGVPRPLRALDRLACAVPSASSILLLHARRS
>CP029617.1|AZM53076.1|2475946_2476984_+|rod-shape-determining-protein
MTVSLEQLRRCHIAVDLGAARTRVFVKGAGLVVDEPSAAAVNTRTGALIAVGQFAEQMTGRTPGYIRVVRPVSGGTVVDIEMAQRMLRHLLGEKLRRTLRRKPRLRAAACTPHDADPLAQRAAVETMVGLGARRVELVDTLIAAAVGCGLPVERPEATMILVCGAATTQVAVLSMGSIVTAERIPVGGEAIDHAIVQHLRHQHELMLPSQSVRPLQLALSGNGLTPHGPESTEIHGRDVATGLARSVHVDTAAVRDAIHTPLTAVLDGIGKVLRDCPPDLVADLADRGIMMVGGSARLPGLDQMLRDATGMPVQIAERPDVCAVLGLGAMLEGKIQPLVLDPLSG
>CP029617.1|AZM53077.1|2479132_2481166_-|molybdate-ABC-transporter-permease-subunit
MSRLHLRTRAPGRPRTPVALALPALLAIAFLLMPLIGILARTEWGELGGHLSAPGVTQALKLSMLVSFWALGLSLLLGVPLAWLLARVDFPGKAFVRSLVLLPMVLPPTVGGVALLLGFGRRGLLGPWLESTFGIVLPFHTSGAVVAATFVSMPFLVISLEGALGGLRPGFEETAASLGASPVRVFFTVTMPMVAPGLIAGAALTWARALGEFGATITFAGNLPGTTQTLPLQVYLLLQDSPEAATSLSLLLLAIAMAVLVGLRGRWSAGASVGAGGRTGAASAPEAPDALGASDGLGAPGASGGAGDRAASGGSEPLGEALPALAALAPQEKWGLHADVTGADELTLDAAPGTTIAVVGPNGAGKTTLLRALLGLTPRAHARLRLGDHDVTALPPHRRGVAWVPQEGALFPHLNALGNTAYGLRAQGVRRARARQEARAWLDRLGVGHLAHRKPGQLSGGQAQRVALARALAARPRLLLLDEPLAALDQTTRAHVRHTLRRHLEGFGGVCLIVTHDPVEAVSLADRVLVLDEGRTLQDAPPAEVTRHPRSPWVARMLGRNAWPGTVGADGTLVLAGQGRLVVADAPAEGTRALAVIAPEAVSVHRERPQGSPRNVWRGTVREVTTAGSRLRVLIVSGEAPDLVAEITPQAAVELGIVDGAEVWTSVKATEVSVVTL
>CP029617.1|AZM53078.1|2481316_2482141_-|molybdate-ABC-transporter-substrate-binding-protein
MSFSPKSFVPASVPASVRRGAAAVVTAALLVPFAAACGSGDDDGGREKGGGGKDVHLTVLAASSLTDVFATAEKAYEKDHPGTSITVSAAGSQELAAQVKQGAPADVLVTADTKTMDGLKAETGTPTVIAKNRLVIATREGNPERIKGLKDLGDSELKVVLADDTVPVGRYSKQVLDRRHVEVKPVSKEANVRSVLSKVELGEADAGLVYRTDAATAPGKVDAVEIPDAQNAVASYPAATLKGSANGEEAAAFVKWLSTGPAQKILREAGFQKP
>CP029617.1|AZM57589.1|2482157_2482556_-|MerR-family-transcriptional-regulator
MQSYTIGQAARLLGVSPDTARRWADAGRVATHRDEGGRRLIDGRDLAAFSVEVAQSGGAGEEDVPYTSARNAFPGIVTAVKLGDVAAQVEIQAGPHRLVSLLTREAVEELGLEVGMQATARVKSTSVHIDRA
>CP029617.1|AZM53079.1|2482694_2483735_+|ribonuclease-BN
MSAHSANSPPMATFGKDKNTGPGPEVEAAAPDEPTELPARSWWSVLRRTGKEFMDDDLPDRAAALTYYGVLSLFPALLVLVSVLGVIGEKATTSVLDNLEKLAPGPVRDLLSDAVRQLQGSGGTSGVMALLGLVLAVWSASGYVGAFIRASNAVYDLPEGRPVWKLTPLRIALTLALMVLLAVSALIVVFTGPIAERAGDAIGVGDEALTAWSIAKWPVLLVLVVSMIALLFWRAPNVHGPGFRWLSPGSVLAVLLWLVASAGFALYVAGFASYNKTYGTLAGVVIFLVWLWLSNLAILLGLEFDAELARQRAIAGGMPPEEEPYVEPRDTRKWPRRRHSRPGPAS
>CP029617.1|AZM53080.1|2483749_2484814_-|hypothetical-protein
MRAEEAFIDYVRRRRSTLLHPQAPPAAVSEALALLGLDDASLARWSASGPALVSLPHASPNVFDPRMRVCWYAAAAQRRAPRAVHHLRVVLTHVNFSDLGWRPYAWWYLGEDGNVRGHRQFSRNKRRKHVTVASQPAMDAVPEAAAGADLAASRVARWGADLAVSYMLITAVVERAAGMVTAPAATTYFPLPWLVSFVREHAAGAASVPDEALTSWCARLTEQAHGRRTGPDGTLLECPAQQATVFDNYSNLAALSLLGAPQVLGGAKMAGYWPHVEELLDVLRPAAPADVRDPRVALVPQGDPGRFVGPTPETAAQLERHGVPYSQGLAVAEHGNFAERRDPFDVPEAAVSSG
>CP029617.1|AZM53081.1|2484803_2486072_-|hypothetical-protein
MTARSSARAVPGARWLLTFFCVGGVAESLQALTIMWASYHLTHDAAVTGAMGAAAYLPGVVLGLMVRKRADRGNAARRLSVTNWVLLAGSSLLALVWAAEASVGVTVAAFAAVQCSLSFVKTMNKAHAGRFIRQRFAASDAVTLRQRSTSLAQVGGVAGGGAAGLLLGADAVGWCFAAAAVLYLAGLWAVHRAMAPEADAAEREGEAVGVPAAAGTGAGEAAAGKEPEGQAPASPGVLRAILVYSVPSSGALPFISTAAVPLAHAVAPGSGNFYAMLSASGMGGGFLAGMALSSGRMSSNAVLRVALPAGAVLAVGLAVVRWQVVVILLFGVLAAVLTTHIMVMQVLTNQAPPEDRVGRFTVVRNAVAGSAKGGAALLAGWFVDAFGLRAAWLILAAVLAVSGLSWWSVGRNPEMEELAGAR
>CP029617.1|AZM53082.1|2486068_2487175_-|hypothetical-protein
MAAFSDTHEFVRLDAEARQWEKTPGPELLLHADALMAAQPFGAVVATSESTMLAAGFLRSRYDLPGLGYEQTLPVTNKWRMRRRLAAAVPSPQAWLSGHFLAEEPERTRAMAEVVVKPIASSASRDVRRMPVAQARAWLADHGELWLVEQAVAVQREFHCDGVCHDGRVSWVEVSEYDRPALKKAGTWGTSILCRDDAMHARLTALTRSVIGALDAVDGVFHAEFLYDGAELYFGEVGMRPAGAGWGELLRVTTGADLWGAFVACQLGHDADRFAPRHAPAETSGLLWARPNPDGSLPLPAPRVRDLPGVVLVGEGNIARGADPASSCEFEYRAYYEGLTPEDAAQLRSAVTGRDAAGPARPGIGAAG
>CP029617.1|AZM53083.1|2487239_2488400_-|hypothetical-protein
MTVVCLGYRAGFVEAARRAGLDLHLVVDKIKPGLKGLSYTKVADLSDAEEVLRAVTEHPGDKMSAVVTGHEHPMFSATVIRSVFGLPGDTDPARCLRFRDKRVQKRAVSPKIPTARCAYLNPSAPDYAALAEQLGEVFVAKPADGFGSQATEPIRGQEQLDDYLRRHPARSDVSTVVESYVEGREIHVDGVWWDGRPAWTAVSGYLAPLMGWTKGEAVADAPLGPAESELSARATRFAAEVLRELDAPDTVFHLEAFVRPDGELVLGEVGARPAGALTPEVLRMTHGVDLYAATLDVGLGRAPELPVPPQEPAELFGWIYLVRDAGRQLTEDDFRDRFDVVEVDYPAPENDRVGTYGRCGHAIVKAATHEGLVDGLRAIAEFNRSV
>CP029617.1|AZM53084.1|2488396_2488846_-|hypothetical-protein
MPVVVRQARRRDATAVARLIHDVYRPFAATFRPTALRWSAETVRACSDTWLIARAGNEWVGVVHQTPDPEGHTLDALAVTPHCRRKGVGTQLVAAVEDRALSLGTRRMVIALRDGLAANIAFFTALGYRPTRPFPPSHHLYVKEIGARE

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Crispr_ID: CP029617_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029617_8

3230596-3230689

Orphan

Consensus_repeat	Method
GTTCCCCGCGCCCCTGACGGGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029617_8

>merge|CP029617|8|3230596-3230689|CRISPRCasFinder
GTTCCCCGCGCCCCTGACGGGGCGCCTCCGCTCGGTTCTTCGCTGCGGGTGCGTTGGGGCTGAGCGCGCAGTTCCCCGCGCCCCTTACGGGGCG

>CP029617|8|8|3230596-3230689|CRISPRCasFinder
GTTCCCCGCGCCCCTGACGGGGCG	CCTCCGCTCGGTTCTTCGCTGCGGGTGCGTTGGGGCTGAGCGCGCA
GTTCCCCGCGCCCCTTACGGGGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP029617.1\|AZM53627.1\|3240814_3242011_+\|peptidase-M19	unknown	unknown	gnl\|CDD\|366534
CP029617.1\|AZM53623.1\|3235861_3236899_-\|glycosyl-transferase-family-2	unknown	unknown	gnl\|CDD\|133016
CP029617.1\|AZM53625.1\|3238626_3239175_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
CP029617.1\|AZM53620.1\|3229786_3230539_+\|TIGR03089-family-protein	unknown	unknown	gnl\|CDD\|274426
CP029617.1\|AZM53616.1\|3224487_3225822_+\|coenzyme-F420-0:L-glutamate-ligase	unknown	unknown	gnl\|CDD\|183957
CP029617.1\|AZM53621.1\|3232279_3234034_+\|LytR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367673
CP029617.1\|AZM53617.1\|3225981_3226977_-\|3-methyladenine-DNA-glycosylase	unknown	unknown	gnl\|CDD\|223200
CP029617.1\|AZM57676.1\|3222597_3222798_-\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM53615.1\|3222984_3223500_+\|cysteine-dioxygenase	unknown	unknown	gnl\|CDD\|380416
CP029617.1\|AZM53619.1\|3228203_3229649_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|128941
CP029617.1\|AZM53629.1\|3242507_3242870_-\|glyoxalase	unknown	unknown	gnl\|CDD\|380093
CP029617.1\|AZM53622.1\|3234135_3235815_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|367673
CP029617.1\|AZM53618.1\|3227015_3228098_-\|GDP-mannose-pyrophosphorylase	unknown	unknown	gnl\|CDD\|224129
CP029617.1\|AZM53626.1\|3239303_3240644_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|367673
CP029617.1\|AZM57678.1\|3230872_3232054_+\|LytR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367673
CP029617.1\|AZM57677.1\|3223534_3224491_+\|2-phospho-L-lactate-transferase	unknown	unknown	gnl\|CDD\|237443
CP029617.1\|AZM53628.1\|3242056_3242494_-\|glyoxalase	unknown	unknown	gnl\|CDD\|380093
CP029617.1\|AZM53624.1\|3237163_3238534_+\|LytR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367673
CP029617.1\|AZM53613.1\|3218164_3221830_-\|family-2-glycosyl-transferase	unknown	unknown	gnl\|CDD\|224137
CP029617.1\|AZM53614.1\|3222097_3222361_-\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791

Protein	Function_ID	Function_description	E-value
CP029617.1\|AZM53627.1\|3240814_3242011_+\|peptidase-M19	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	1.97225e-104
CP029617.1\|AZM53623.1\|3235861_3236899_-\|glycosyl-transferase-family-2	gnl\|CDD\|133016	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.	1.34488e-92
CP029617.1\|AZM53625.1\|3238626_3239175_-\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	3.86927e-49
CP029617.1\|AZM53620.1\|3229786_3230539_+\|TIGR03089-family-protein	gnl\|CDD\|274426	TIGR03089, conserved_hypothetical_protein, TIGR03089 family protein. This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by pfam00501.	3.37988e-73
CP029617.1\|AZM53616.1\|3224487_3225822_+\|coenzyme-F420-0:L-glutamate-ligase	gnl\|CDD\|183957	PRK13294, PRK13294, F420-0--gamma-glutamyl ligase; Provisional.	0
CP029617.1\|AZM53621.1\|3232279_3234034_+\|LytR-family-transcriptional-regulator	gnl\|CDD\|367673	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain.	2.06153e-51
CP029617.1\|AZM53617.1\|3225981_3226977_-\|3-methyladenine-DNA-glycosylase	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	5.35759e-24
CP029617.1\|AZM57677.1\|3223534_3224491_+\|2-phospho-L-lactate-transferase	gnl\|CDD\|237443	PRK13606, PRK13606, LPPG:FO 2-phospho-L-lactate transferase; Provisional.	4.91726e-175
CP029617.1\|AZM53615.1\|3222984_3223500_+\|cysteine-dioxygenase	gnl\|CDD\|380416	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain. This family contains cysteine dioxygenase (CDO; EC 1.13.11.20), which catalyzes the conversion of cysteine to cysteine sulfinic acid, the first step in the biosynthesis of essential oxidized cysteine metabolites such as sulfate, hypotaurine, and taurine. CDO also plays an important role in the regulation of intracellular cysteine levels in mammals; CDO expression is altered in cancer cells, and abnormal or deficient CDO activity has been linked to Parkinson's disease, Alzheimer's disease, and rheumatoid arthritis. CDO is an iron-dependent thiol dioxygenase that uses molecular oxygen to oxidize the sulfhydryl group of cysteine to generate cysteine sulfinic acid. The CDO active site contains an amino acid-derived cofactor. These enzymes are found in prokaryotes as well as eukaryotes and belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	3.81224e-24
CP029617.1\|AZM53619.1\|3228203_3229649_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|128941	smart00701, PGRP, Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.	2.20615e-45
CP029617.1\|AZM53629.1\|3242507_3242870_-\|glyoxalase	gnl\|CDD\|380093	pfam18029, Glyoxalase_6, Glyoxalase-like domain. This entry comprises a diverse set of domains related to the Glyoxalase domain. The exact specificity of these proteins is uncertain.	8.36763e-27
CP029617.1\|AZM53622.1\|3234135_3235815_+\|transcriptional-regulator	gnl\|CDD\|367673	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain.	1.38994e-44
CP029617.1\|AZM53618.1\|3227015_3228098_-\|GDP-mannose-pyrophosphorylase	gnl\|CDD\|224129	COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis].	3.95036e-105
CP029617.1\|AZM53626.1\|3239303_3240644_+\|transcriptional-regulator	gnl\|CDD\|367673	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain.	7.10949e-57
CP029617.1\|AZM57678.1\|3230872_3232054_+\|LytR-family-transcriptional-regulator	gnl\|CDD\|367673	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain.	1.72626e-59
CP029617.1\|AZM53628.1\|3242056_3242494_-\|glyoxalase	gnl\|CDD\|380093	pfam18029, Glyoxalase_6, Glyoxalase-like domain. This entry comprises a diverse set of domains related to the Glyoxalase domain. The exact specificity of these proteins is uncertain.	1.07744e-21
CP029617.1\|AZM53624.1\|3237163_3238534_+\|LytR-family-transcriptional-regulator	gnl\|CDD\|367673	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain.	5.16657e-56
CP029617.1\|AZM53613.1\|3218164_3221830_-\|family-2-glycosyl-transferase	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	4.28468e-31
CP029617.1\|AZM53614.1\|3222097_3222361_-\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	4.04301e-28

>CP029617.1|AZM53620.1|3229786_3230539_+|TIGR03089-family-protein
MNANDRTPADLLRSALAADPGRPLVTFYDDATGERVELSVATFANWVAKTANLLQGDLAAGPGDRAVLLLPAHWQTAVWLLACSSVGVVADVGGDPASADLVVSGPDDLDAARACSGERVALALRPLGGRFPQPPEGFADYAVEVPGQGDRFVPYAPVDPDEVSLVVGGEELTGAEVVERARADAGRMGLGSGSRVLSGLSYGSWEGLSSGLYGALAAGGAVVLCRHLEGLGEEALAKRVVDERVSLTVR
>CP029617.1|AZM53619.1|3228203_3229649_-|N-acetylmuramoyl-L-alanine-amidase
MRGFLASSIGVTCAAALALPLTLPSTTARAATPGAKTAPTTKTAPSTKTAPSTKTAAPSTKAAPNAKTAPSAEGIPGSTQSLPLAPLAADRSAAPAEREQGLTRRDVRPFSLVGVVWDDPADELHGTVQVRTRATGTTTWSGWQGVETHNHEHAADPDTMERGSGRLRGSTAPLWVGDSDGVEIRVRAESDRRAGHAPALLPEGLRLELVDPGDEPPPRGGPAEVPRATAMSAEAAAASAVNADLAPLDAAVIPELTKRQTEADLIAARGGREVVGKVRPYIGPRPRITTRKGWGADERIRERDFAYTRTVKAAFVHHSASGNNYRCSEAGSVLRSIYRYHVRSSGWRDFGYNFAVDKCGNIYEGRAGGVAKPVLGAHTRGFNANSTGIAVLGTYSSANPPKAAVTAIARLTAWKLGLYGANPRGTTYLKSGGGNLFKKGRNVRLRVISGHRDGFATDCPGSRLYDKLGKARSSSARMQGR
>CP029617.1|AZM53618.1|3227015_3228098_-|GDP-mannose-pyrophosphorylase
MTEAILLVGGKGTRLRPLTVHTPKPMVPAAGVPFLTHQLARARAAGVEHIVLATSYLAEVFEPHFGDGSALGLHIEYVTETEPLGTGGAIRNVASHLRSGPDEPVLIFNGDILTGLDIRALVDTHRTSGADVSLHLTRVEDPRAYGLVPTDATGRVTAFLEKPQTPEEILTDQINAGAYVFRRSVIDTIPEGRPVSVERETFPDLLAHGAHLQGMVDSTYWLDLGTPQAFVRGSADLVLGRAPSPAVPGRRGESLVLPTASVAPDAKLTGGTVVGENARVGEGARISGSAILAGAVVEPGAVITDSLVGAGARVGARAALSGAVIGDGARIGADNELRDGVRVWCGAELPPGAVRFSSDQ
>CP029617.1|AZM53617.1|3225981_3226977_-|3-methyladenine-DNA-glycosylase
MSSRFAPRPTRTTVRGGETAVPAGVPRQPTAPRTRTWKPPFPLDLGVTIGPLRRGPADPTFRTTPDGSIWRASRTPEGPGTLRLALRSGTVEAEAWGPGAAWFLDRLPTLLGASDDPSAFAPRHRLVAATARRRPGLRLTRTGLVLESLIPSILEQKVTVDEAYRAWRLLVRAHGEPAPGPALHLYVMPDPRTWSLIPSWEWHKAGVDNKRASTILRAVKVAARLEEAATMEPLKAQARLELIPGIGPWTSAETVQRSNGAPDAVTVGDLHLPGIVGHALADNREADDEAMLSLLTPYEGQRHRATRLILLSGHTPPRRAPRMRRTNIALL
>CP029617.1|AZM53616.1|3224487_3225822_+|coenzyme-F420-0:L-glutamate-ligase
MTPPDGAGPSFRVWAVPGLPEVREGDDLAKLIAAAEPGLADGDVLLVTSKIVSKAEGRVVEAGDREAAIDAETVRVVARRGTLRIVENRQGLVMAAAGVDASNTPSGTVLLLPSDPDASARALREGVRDALGVDVGVVVTDTFGRPWRAGLTDVAIGAAGVRVLDDLRGGVDAYGNPLSATVVATADELAAAGDLVKGKAAGLPVAVVRGLAHVVGDGSGAGDSADAGARALVRGARDDMFRLGTSEAVREAVTLRRTVREFTDEEVDPGAVRRAVAAAVTAPAPHHTTPWRFVLVESAAARGELLDAMRDAWVADLRRDGRSEAAIAKRVRRGDVLRNAPYLVVPCLVMDGAHAYGDARRDAAEREMFVVSAGAGVQNFLVALAGERLGSAWISSTMFCRDVVRDVLGLPGGWDPMGAVAVGHPAGEPPARGERDIAGVVTVR
>CP029617.1|AZM57677.1|3223534_3224491_+|2-phospho-L-lactate-transferase
MRIVVLAGGIGGARFLRGLKKAAPDADITVIGNTGDDIHLFGLKVCPDLDTVMYTLGGGINEEQGWGRTDETFRVKEELAAYGVGPEWFGLGDRDFATHIVRTQMLGAGYPLSAVTQALCERWQPGVRLIPMSDDRVETHVAVTLDGEQKAVHFQEYWVRLRASVDAHAIVPVGAEQAKPAPGVLEAIAEADVVLFPPSNPVVSVGTILAVPGIREAIADAGVPVVGLSPIVGDAPVRGMADKVLAAVGVETSAAAVAEHYGSGLLDGWLVDSVDEGVVERVESAGIRCRAIPLMMTDIDAAAEMARAALALASEVRA
>CP029617.1|AZM53615.1|3222984_3223500_+|cysteine-dioxygenase
MNSDSDLQIAGDILEVPHLLQPAREHPATVAEFVGLARTIAADRSQWEHLVQYDATSRWYHRLRTGPGYEVWLLSWVPGQGSGLHDHGRSSGVLTLLEGELTEHTERGTRALAAGAQRVFAPGYVHEVVNDSLEPAVSLHVYYPGLTEMPMHAARCAATAADGVAEDVVTA
>CP029617.1|AZM57676.1|3222597_3222798_-|hypothetical-protein
MRVIERARFASMPTRTPGYTLTVNSMSEMWDSFHLIRLFGQAKGLCTGRTGHMAQQPALKHRRPSI
>CP029617.1|AZM53614.1|3222097_3222361_-|WhiB-family-transcriptional-regulator
MTELVQELLVEDADEELGWQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRSECLEYALANDERFGIWGGLSERERRRLKKAAV
>CP029617.1|AZM53613.1|3218164_3221830_-|family-2-glycosyl-transferase
MSVHNHSAAPHDAAAPEFPRHVVTAVLVAHDGARWLPDALAGLLGQERPVQQAVAADTGSADDSARLLTEALGPDRVLHLARRSGFGTAVDEAVRGAGTPTPEELPYLKRPSGWDPVSRSWRDEAYDLPDLPHGEPVQWLWLLHDDCAPEPDALAELLRAVENEHDLGKDVAVVGPKLRGWYDRRQLLEVGVSIANSGRRWTGLDRREQDQGQHDHVRPVLSVSTAGMLIRRDVYEQLGGFDRYLPLMRDDVDLCWRAHAAGHRVLVAPDAVVRHAEASSRERRTVDCVGRTATSPHRVDKAGAAYTLLANARTAVLPWVLFRLVFGTLLRTVTYLLGKAPGQALDEIAGLLATLLRPGRILAARKQRGKSVLDAGETRALFPPPGATVRATVEQAAGSLVGRSDPEAPAGAGRHGAVESGPGGDDADFLEIEQFARLKRIARKPGPMLFVVLLFVSLIACRALLGGGALAGGALLPAPADSSGLWARYLDGWHPVGTGGTETAPPYLALVAALSSLLLGSTGLAVTVLLVGSVPLAGFAAYFASRPLVTSRLLRAWASVAYAFLPAATGALAGGRIGTAVLAVLLPLIARAGAAAAGLTASGSARGTWRATWAYALLLTLATAFTPVVWPIALVLGLALLVLRRRDITGYGPRFLAALGTPLLMLAPWSLTLLPFGFFKEAGLEFGTGSASALDLLGTSPGGPGTVHGLLLTGIVLAALGALLRTERQLAVRTAWTAALVSLVFAVLSNGSAWAGPATLAYGIALLAAAALGADGARARVAEQSFGWRQPVAALIAFAAAAGPLLLAAGWMIRGADGPLERRDPVQVPAFVAEESGTQDQARTLVLDSESAADVAYTLVRGSGARLGDAELAAAAGPDDRLDKIVARLVAGSGADQADQLGGYAVRYVLVREGAPRQMSRTLDATPGLTRLSQEDGSALWRVDRQVSRAAIVPKTGDPEPVAAGPVELHTKIPAGDAGRVLRLADSAAPGWTATLDGRPLTRTTLDGWAQGFELPTSGGRLDVTYEAPVGHTAWLWAQGALALVLVVLALPGRRRDVDDDLPEEPVVPAQAVEGEGRRARRLRAQSEQAAQDAGQDVPPPPSEEPLGAVPQQQSYGAWEEPAHAGAEQQYQGEYQNAPYQDGTYPPGSYEQAAYPAEAPQEGQYDPYASYGGASGVYGGGQQYDQSYGEGPYGQQQPPTPPPPPRPPRATDSERPDGSQQ
>CP029617.1|AZM57678.1|3230872_3232054_+|LytR-family-transcriptional-regulator
MTYGPGAGASPSGAGAVRRRRRWLRGLALGVAMLVLAAGGAGWVAYRKLSGNITKDTDAAAELARFEKERPTPLVHDAQNILLIGSDTRAGPANRKYGRDPGTQRSDTTILLHLAADRQSATAVSIPRDLMVDIPGCRRPDGSRTRAQFAQFNWAFEFGGTACTIRTVEKLTRIRVDHHMVVDFAGFKDMVDAVDGVEVCLKAPIDDDDAHVRLAPGPRTLDGEQALGYVRARKSLGNGSDTERMDRQQEFLGALVNKVQSNDVLLNPAKLYPVLDAATSSLTTDPALASLRGLYELVRGMRNIPTERVQFLTVPRKSYTYDPNRDELVEPAAEQLFTRLRTDSPVQVIPEKPEKPAPAQQQADSDGKPDDPSHTPSPAPTFRGNTAAEAACE
>CP029617.1|AZM53621.1|3232279_3234034_+|LytR-family-transcriptional-regulator
MDAQGRGRAENIDPADQWVLNPDTGDYELRLSPSAGQGQSTVPGPRRADAPRQGGRGRPAPGRDRERPRQGERDERREVPGQRRRRVKEPETTGGGRRKQRPRKSKGKKVLVWTGGTLAFLLVTGCVGGYLYYQHLNDNITSINDDGAGTGGFSKDRAINILVVGTDKRSGDGNKGYGDEGSLGHADTTILLHVSKDRTNATALSIPRDMITDIPDCPTTMKDGSKKTIPGSTNVRFNESLGQNDRTPSCTMRTVTKITGIKLDHFMVADFNAVKTLSSAVGGVEVCLAKDIDDPKSHLKLSKGKHTIEGEKALAFVRTRHTVGNGGDLSRIALQQQFLSALMRKLKSSDTLTNPKKMFSLAEAGTKALTVDSTIADIMKLRDLGMELGKLDMKNLTFATLPVKDNPAEKTPITVVPDPPKADPLFAMLRADQSLTAVKKKEKKEKAAVAARLKGPKADPSDVRVDIYNGSGKTGAAQTTLTWLQNTEGVLKSSQQGNAPSVIKKTTLEYGPAQADQARRLAEIMGLPASALKPGKSEKNAQGLPAMKLTLGGDFEGAGVPIAPPSKAPDGVQKVEADKTVCAK
>CP029617.1|AZM53622.1|3234135_3235815_+|transcriptional-regulator
MRQNSVRKEGARQRAPHASDHGWDDGPHQDGAPPGEPSADTATPPAARPPGHRRRRRGSGGTARPPRRKRRVLRWSATILSVLILGTAGAGYLYYQHLNGNLETDDLNLGEHRAPEPTPNAAGQTPLNILLIGSDARDSKENQKLGGAKDTFGSPPLADVQMLLHLSADRSNMSVISMPRDTLLQIPKCTDPDDGKVYPQTGPRTMTNQSLGRGGPGCTVATWEKLTNIHIDHFMMVDFAGVVSMADAIGGVPVCVDKNIHSRDNQGHGSGLKLEKGTTEVKGEQALQWLRTRYGFEGGTDISRAKAQHMYMNALVRKLRENTGLTSPNQLRKLAEEATNALKVDDGLGTIKKLYDLGNELKKVSPSRTTMTTMPFEYVGARVIPKPGDAEQLFRLVRDDIPLDGKGRKKPAKEKLSDDPAADDAQIGIQVQNGTRTATEPPASGRANTVAQLLTGKGFTKATPDTTTVLTEDRTVIRYPSAELEGDAQRVAKSLGLPLSSVKKSTDVSGVTLVVGADWREGEKPPKAPKKDDRTPESADALSGSDKKACMKVDPDFTW
>CP029617.1|AZM53623.1|3235861_3236899_-|glycosyl-transferase-family-2
MNAKSEAQPPAVSVIMPVLNEERHLREAVHAILRQEYAGEMEVVVALGPSTDRTDEIAAELVREDPRVHTVPNPTGRTPAALNAAIKASRHPIVVRVDGHAALSPGYITTAVRLLEETGAMNVGGIMHAEGQNDWEYAVAAAMTSKIGVGNAAFHTGGEAQQAETVYLGVFRREALEQQGGYNEEFIRAQDWELNFRIREAGGLIWFSPDLLVSYRPRPSVKALAKQYKDYGRWRHVVARYHAGSINLRYLAPPTALCAIAAGLVVGAALTPWGFVIPGGYLAAITAGSVPAGKGLPLKARLQIPVALATMHMSWGWGFLTSPRSLARKVIASRRPAVLGETQEA
>CP029617.1|AZM53624.1|3237163_3238534_+|LytR-family-transcriptional-regulator
MRVATTCSVAVLAAAGIGHTVVTSLDTGIKRVDAFRDMKNRPASGNGMNVLLVGTDGRDKITPEDKQKYRLGGAPCHCTDTIMIVHISEDRDRASVVSLPRDSYADLPPHTDQNSGKQHRAHPNKINAAYAEGGPNLTVRTVEHMTKVKIDHYLEVDFTSFIKTVDVLGGVEICTAKPLKDSHTGLNLAVGTHAMNGGEALQYVRSRYVDGASDLGRMHRQQRFLAALIAKATSSGVLLNPVKFRDVTLTLLGSVRADKGFGTSDMLDLGRAMRGFSPSSSEFTTVPLSDRGQVLPGIGSTLKWHPEKSAKLFKALREDRPLAPHRVRSKHALVDVSPQQIRVQVDNGTGTPGLGKRVDAELRATGFRTTGLPADVPNAARAPAPRTVVAYDPRWDRSAKSLATALPGCEMRRVDGLGATLKVTAGTDFKAVRPVRAEDELQGEFGVVTGDQVVCP
>CP029617.1|AZM53625.1|3238626_3239175_-|acyl-CoA-thioesterase
MTDQAPRLESEIPGKPTSASRTTLSHIMTHADTNLLGTVHGGVIMKLVDDAAGAVAGRHSGGPAVTASMDEMVFLEPVRVGDLVHVKAQVNWTGRSSMEVGVRVLAERWNESTPAQQVGSAYLVFAAVDADGKPRTVPPVLPETDRDRRRYQEAQIRRTHRLARRRAIKELREARAAEGFDD
>CP029617.1|AZM53626.1|3239303_3240644_+|transcriptional-regulator
MSDWPDDQAGGRGYGRGSGDSQPDGARVMRHVQRGGPTRPAGPPPGGVPQQPSYDEYGDAYGNGQPYGDARDEVFEPRTPRRDAYGQSYDSGYNTGQVYGQPAGAGRGGDGQPPRTARPAPNWRRRIKIGSITLVSVLLVTSVATYFWADGKLKREVDLSKVIERPEGGAGTNYLIVGSDSREGMSDEEKKKLHTGSAEGKRTDSMMILHVADDGGNTMISLPRDSNVTIPSFKGAESGKLYPNQGRQVKLNAAYAEDGPELLVRTVEYNTGLRIDHYAEIGFGGFAKIVDAVGGVEMDIPKGFKDKKSGADFEAGKQTLDGEQALAFVRTRYALPGSDLDRTKNQQKFLAALANQAATPGTVMNPFKLYPTMGAGLDTLIVDKDMGLMDVASMFWAMKGVTGGDGKSMNMPLAGTSGGNLLWDKAKVKQLVNQLNNDEKVTVEGG
>CP029617.1|AZM53627.1|3240814_3242011_+|peptidase-M19
MADLQDEINATAEAGELDQSPARPDPHAEPLPEGEPGLGPDAESDAEPDVESDVEPDADSLHADDPLARARAVLTAHPVADGYSGLPGALRDLPWYDFETGDSGLESDLPRLRAGRVGAQFWSVHVPDWLGADRVVRATLEQIDLVKHVVGAHSEGLRLARDASEATDARNCGRIATLIGPARGAALGDSLGTLRALHSLGVCAVTLCGTSWAGASGLSAFGEEVVREMNRLGVLADLSGASEATVRRVLAISKAPVIFTRSGAGAVRDHPDNLSDELLTEVGAAKGLCLVPLAAERTGPSVRDVADHLDHVRGVAGPECVGLSGTYDTPDEHPDDLADPSGYPRLIAELIERGWSEADLALLTWGNVQRALRGADFTARATRERRTASTATIEHLDG
>CP029617.1|AZM53628.1|3242056_3242494_-|glyoxalase
MVDQYDPHSTHSTDSTDPAPIARLRTVVFDCPRPRELAEFYAAIIGGTIEGDDDWVDLLAPGRVKVSFQRVPDLRPPEWPRADRNAQQVHLDLDAGSTEEEMDAAQEKVLALGARPLDVDDDGGKRGFRVYADPVGHPFCLLRIS
>CP029617.1|AZM53629.1|3242507_3242870_-|glyoxalase
MAFAKLGVVVLDCPDPLALAEFYAAVIGGTPTPADEGWVDLTGHGGTALAFQEAPGYVPPKWPAPDGSQQFHLDLTVEDMDAAEEQALALGATVLDAADRDRNWRVYADPAGHPFCLCAC

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Crispr_ID: CP029617_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029617_9

3342866-3342964

Unclear

Consensus_repeat	Method
GCCCCGTCAGGGGCGCGGGGAACTGCGCG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of CP029617_9

>merge|CP029617|9|3342866-3342964|CRISPRCasFinder
GCCCCGTCAGGGGCGCGGGGAACTGCGCGCCAAGCCACGTACAACCGGCACGTCATACACCCTGGCCAAGGCCCCGTAAGGGGCGCGGGGAACTGCGCG

>CP029617|9|9|3342866-3342964|CRISPRCasFinder
GCCCCGTCAGGGGCGCGGGGAACTGCGCG	CCAAGCCACGTACAACCGGCACGTCATACACCCTGGCCAAG
GCCCCGTAAGGGGCGCGGGGAACTGCGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP029617.1\|AZM53690.1\|3329590_3330325_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377857
CP029617.1\|AZM53701.1\|3348305_3348848_-\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM53699.1\|3344159_3347177_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373070
CP029617.1\|AZM53692.1\|3331175_3331589_+\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM53695.1\|3335951_3337409_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370724
CP029617.1\|AZM53689.1\|3328638_3329382_-\|N-acetyltransferase	unknown	unknown	unknown
CP029617.1\|AZM53693.1\|3331709_3332117_+\|ketosteroid-isomerase	unknown	unknown	gnl\|CDD\|226158
CP029617.1\|AZM53704.1\|3351713_3353159_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184641
CP029617.1\|AZM53697.1\|3340069_3340858_-\|peptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
CP029617.1\|AZM53705.1\|3353275_3354250_+\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|179535
CP029617.1\|AZM53691.1\|3330321_3331146_-\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225758
CP029617.1\|AZM57688.1\|3341308_3342778_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341045
CP029617.1\|AZM53694.1\|3332164_3335695_-\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
CP029617.1\|AZM53696.1\|3337499_3340073_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223650
CP029617.1\|AZM53700.1\|3347184_3348180_-\|cell-wall-assembly-protein-Knr4	unknown	unknown	gnl\|CDD\|379604
CP029617.1\|AZM53703.1\|3350034_3351372_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
CP029617.1\|AZM53698.1\|3343020_3343923_-\|cellulose-binding-protein	unknown	unknown	unknown
CP029617.1\|AZM53702.1\|3349493_3350009_+\|SUKH-3-domain-containing-protein	unknown	unknown	gnl\|CDD\|379608
CP029617.1\|AZM53706.1\|3354414_3355011_+\|50S-ribosomal-protein-L25	unknown	unknown	gnl\|CDD\|235534
CP029617.1\|AZM53707.1\|3355084_3355687_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457

Protein	Function_ID	Function_description	E-value
CP029617.1\|AZM53690.1\|3329590_3330325_-\|hypothetical-protein	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	6.21451e-31
CP029617.1\|AZM53702.1\|3349493_3350009_+\|SUKH-3-domain-containing-protein	gnl\|CDD\|379608	pfam14433, SUKH-3, SUKH-3 immunity protein. This family belongs to the SUKH superfamily and functions as immunity proteins in bacterial toxin systems.	3.37621e-62
CP029617.1\|AZM53699.1\|3344159_3347177_-\|hypothetical-protein	gnl\|CDD\|373070	pfam14440, XOO_2897-deam, Xanthomonas XOO_2897-like deaminase. A member of the nucleic acid/nucleotide deaminase superfamily prototyped by Xanthomonas XOO_2897. Members of this family are present in a wide phyletic range of bacteria and are predicted to function as toxins in bacterial polymorphic toxin systems. The Xanthomonas XOO_2897 lack an immunity protein and is predicted to be deployed against its eukaryotic host.	1.65791e-35
CP029617.1\|AZM53695.1\|3335951_3337409_+\|hypothetical-protein	gnl\|CDD\|370724	pfam09852, DUF2079, Predicted membrane protein (DUF2079). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.0054e-56
CP029617.1\|AZM53700.1\|3347184_3348180_-\|cell-wall-assembly-protein-Knr4	gnl\|CDD\|379604	pfam14414, WHH, A nuclease of the HNH/ENDO VII superfamily with conserved WHH. WHH is a predicted nuclease of the HNH/ENDO VII superfamily of the treble clef fold. The name is derived from the conserved motif WHH. It is found in bacterial polymorphic toxin systems and functions as a toxin module. WHH is the shortest version of HNH nuclease families. Like AHH and LHH, the WHH nuclease contains 4 conserved histidines of which the first one is predicted to bind a metal-ion and other three ones are involved in activation of water molecule for hydrolysis.	1.31508e-12
CP029617.1\|AZM53693.1\|3331709_3332117_+\|ketosteroid-isomerase	gnl\|CDD\|226158	COG3631, COG3631, Ketosteroid isomerase-related protein [General function prediction only].	1.42462e-14
CP029617.1\|AZM53704.1\|3351713_3353159_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184641	PRK14352, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
CP029617.1\|AZM53697.1\|3340069_3340858_-\|peptide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.22603e-110
CP029617.1\|AZM53691.1\|3330321_3331146_-\|MOSC-domain-containing-protein	gnl\|CDD\|225758	COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only].	2.69335e-15
CP029617.1\|AZM57688.1\|3341308_3342778_+\|MFS-transporter	gnl\|CDD\|341045	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including various Saccharomyces cerevisiae proteins such as azole resistance protein 1 (Azr1p), vacuolar basic amino acid transporter 1 (Vba1p), vacuolar basic amino acid transporter 5 (Vba5p), and Sge1p (also known as Nor1p, 10-N-nonyl acridine orange resistance protein, and crystal violet resistance protein). MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.59182e-58
CP029617.1\|AZM53694.1\|3332164_3335695_-\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
CP029617.1\|AZM53696.1\|3337499_3340073_-\|hypothetical-protein	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	7.34199e-29
CP029617.1\|AZM53705.1\|3353275_3354250_+\|ribose-phosphate-diphosphokinase	gnl\|CDD\|179535	PRK03092, PRK03092, ribose-phosphate diphosphokinase.	0
CP029617.1\|AZM53703.1\|3350034_3351372_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	3.14027e-35
CP029617.1\|AZM53706.1\|3354414_3355011_+\|50S-ribosomal-protein-L25	gnl\|CDD\|235534	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed.	7.29454e-64
CP029617.1\|AZM53707.1\|3355084_3355687_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	2.30145e-93

>CP029617.1|AZM57688.1|3341308_3342778_+|MFS-transporter
MLSMALVAVDATIVSTAVPQIVGSLGGFPIFSWLFSGYLLAATVTLPVYGKLSDTFGRKPVLVAGSVLFLLGSALCALAWNMESLIAFRVVQGLGGGAIQGTVQTLAADLYPLKERPKIQAKLSTVWAVASIAGPALGGLIAACADWRWIFLINLPIGAFALWLIVRHLHEPAREPVARRRVDWPGALAVFACGGVLLTALVQGGVAWAWLSAPSLALFAAGLALVGVVVLVERRAAEPIIPGWVWRRRTIAAVNLALGALGLLMVAPTVFVPTYAQSVLGLAPIAAGFVLSAMTLSWPVSAAFSQHVYRRIGFRNTAAIGASAAALIMFAFPLLPYPGSAWQPALLMLLLGAALGIFQLPLIVGVQSTVDWAERGTATASVLFCRQIGQTLGAALFGAVANGVLSARLGGSGSLDSVARVLDDPGSVSDPERLRRAVDGAVDAVFLGAGAAACLALLVLLALAPRRFPLLPEQRRTPSDQVSPARRPE
>CP029617.1|AZM53697.1|3340069_3340858_-|peptide-ABC-transporter-ATP-binding-protein
MTTAVTTPRHGGTGGRTAVAARARQVVKAYGSGETRVVALDRIDVDIARGHFTAIMGPSGSGKSTLMHCLAGLDTVTSGQIYLDETEITGLKDKKLTRLRRDRIGFIFQAFNLLPTLNALENITLPMDIAGRKPDRAWLDQVVETVGLAGRLKHRPTELSGGQQQRVAVARALASQPEIIFGDEPTGNLDSRAGAEVLGFLRRSVTDLGQTIVMVTHDPVAASYADRVLYLADGRIVDEMHHPTADQVLDRMKSFDARGRTS
>CP029617.1|AZM53696.1|3337499_3340073_-|hypothetical-protein
MTVLKTSLRNFLAHKGRMALSAVAVILSVAFVCGTLVFSDTVSTTFDKLFAATSADVTVTPKSAEDTDEGPRSGRPESMPASVVQEAKRAEGVKSAEGAVISQSVTVVDAGNENVGPTNGGPTLAGNWTRNDLRSMEITSGHSPRGPTEVMVDADTADKHDLKIGDKLRTIAATGDHTARITGIATFKVTNPGAAVVYFDTPTAQRELLGATGRFTHVNLTARAGVSDTELKASVAGALDKATYDIKTQKESADDNRESVSGFLNVMKYAMLGFAGIAFLVGIFLIINTFSMLVAQRTREIGLMRAIGSSRKQVNRSVLIEALLLGVTGSVLGVGAGIGLAVGLMKLMSGMGMELSTGDLTVSWTTPVIGMVLGIVVTVLAAYLPARRAGKVSPMAALRDAGTPADGRASVLRAVIGLALTGVGALGLYAAAQADKAKEGSLFLGGGVVLTLIGFVVIGPVLASGVVRVISVVLLRAFGPVGRMAERNALRNPRRTGATGAALMIGLALVACLSVVGSSMVASATAELDKSVGADFIVQGKGGLTAEAERALTKTPGVDHFSRYKDVGADITTPDGKVTKGAGLSATDPTYVKDLRREAVSGDVSAAYGKDAMSVGEDFADKHHLKVGDTLKVAFDDGRTGELRLAAITSDEGSLEKGAMYTDIATAERYVPADRMPLTEMVLAEAAAGQQDKAYEALKKSLAAYPQFEVMDQTDFKQTLKDQVGQMLNMVYGLLGLAIIVAILGVVNTLALSVVERTREIGLMRAIGLSRRQLRRMIRMESVVIALFGALLGLGLGMGWGATAQKLLALEGLKVLEIPWPTIIAVFIGSAFVGLFAALVPAFRAGRMNVLNAIATE
>CP029617.1|AZM53695.1|3335951_3337409_+|hypothetical-protein
MPGAQPDAPAPVRGDGLIPSRDQTSPGPRKGTRSVWDRAPHLLAAALFLAYATVSIGRYRRMESRSWDLGIFEQAVRAYAHLQVPVADLKGPGANILGDHFSPVTALLAPAYRLFPSPLTLLVAQALLLAVSAIPVTRAATRLLGRGSGLAIGVAYGLSWGIQRAADFDFHEICFAVPLIAFSLEALLRQRWRAALLWALPLVLVKEDLGVTLAAIGLVVAIRAHRRGHSKAVPYALAVTAFGAVATLVTLTLVIPAFNSGGAYDYWDKVGEGGAAAGALGGLDTKLRTLAWLLVPTTGLLALRSPLLLVALPTLGWRFLSADDHYWGTDWHYSAVLMPVILLALVDAVDILRRNERPWLRQYADRLPACAAAAALALTTSLPLAGLTEARTYEKSGRVTAVERMLDRVPDGATVEANIGPISRLTSRARVFWVGAAHPVVPRYFALDVRSGWTKDPVAYAEKLHPGADYVAEDTAYGYVLLRKV
>CP029617.1|AZM53694.1|3332164_3335695_-|transcription-repair-coupling-factor
MSLHGLLDAVVKDSALAEAVKAAADGHRSHVDLVGPPAARPFVVAALARDSGRPVLAVTATGREAEDLAAALRTILPPDGVVDYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDPETGPVSVIVAPVRSVLQPQVKGLGDLEPVALRQGETTDLNEIVAALAAAAYSRVELVEKRGEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELLLTDEVRRRAAALAEDHPELGELLNKIAEGIAVEGMESLAPVLVDEMELLLDVMPKNSMAVVCDPERVRTRAADLVATSQEFLHASWAATAGGGEAPIDVGAASLRGIADVRDHARDLGMMWWSVSPFAADEGLDENTLKLGMHAPETYRGDTAKALADTKGWLADGWRTVYVTEGHGPAARTVEVLGAEGIAARLDGDLTELTPSLVHVSCGSIDYGFVDPALKLAVLTETDLSGQKAAGKDGQRMPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSARMAAPGHAFGPDTPWQRELEDAFPYVETPDQLTTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRFQTETESKATLEGLRDGSVDIVIGTHRLFSAETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEERQIGAAIRRELLREGQVFYIHNRVESIDRAAARLRDIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGGVEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANTEEDIRAVREELTDRYGKLPEPVENLLLVAGLRMLARACEVGEIVLQGNNIRFAPVELRESQELRLKRLYPGTVIRANAHQILVPRPKTAKVGGKPLIGRELLGWVGEFLTSILGS
>CP029617.1|AZM53693.1|3331709_3332117_+|ketosteroid-isomerase
MTAEHTRATVQEFLAARVAGDTARLTALFADEVDWLLAENPAVPWIRPRTTAAECAAQFTELMEHTVPEDARARVDTFLVDGADAVLMGHVSGTVRATGKSFEGPFALRLTVEEGRITRHHLYENSLSIAEACTA
>CP029617.1|AZM53692.1|3331175_3331589_+|hypothetical-protein
MHKRLRRLAVLLAVIAVGATACGPSDASSAPSASTPTAVSTPTAPSASPSARGRGLKGAAAAFYLRTLRKHYPDLDHISDDALVAEGDALCTIRGAALGEQFTKSMRRLGTSKKQTSRIMGAAHGLCRDEDEQLYKD
>CP029617.1|AZM53691.1|3330321_3331146_-|MOSC-domain-containing-protein
MVRLLPRRSGPRRRTAARDARQLPWRSPSPPRGGESAVTLKVVGLRRFPVKSMLGEEHDRLEFDAGGAIGDRRWALRCADGKLGSGKNHPRFRRIPGLLEHYAAYDDDGLPVITAPDGATLRPGDPRVPERFGDGVELVREAEDGSESLKDVSPVSLIGTASLRALGGLLGDADPVDVRRLRKNIVVETDEPWIEEDWIGREIVLGGGRDTAPLRLRGIKRVKRCVMVTQAQPGLPEDNRVLKTLTAARGMCIGIHTDVVTPAPLALGDTVVVR
>CP029617.1|AZM53690.1|3329590_3330325_-|hypothetical-protein
MNRRTTSALLALVAVPALLTGCDVRTDGGSGGGAGAGAGAGAEAGSALAAVDTLTVKGRAPKTGYDRARFGSAWADTDSNRCPTRDDILKRDLKDVRYRGGDCQVVAGRLAPDPYSGKDVTFRRGRSQVDIDHLVALSDAWQKGAAQWAPAKRIAFANDPLNLLAVDAGPNRSKGDGDTATWLPPNKAYRCAYVAGQVGVKKKYGVWVTAPEKRAMRKVLSACPDRKLPTGPAPTSAPPRFRAD
>CP029617.1|AZM53689.1|3328638_3329382_-|N-acetyltransferase
MELKITTLAERPELVGPLWKMAEDWPEFILHDPVGWSLIGRIVADLPEYVLVATDGTGKVVARAFSVPLALRGRAGGELPDGGWDQVLLWAFSDLRHGKEPDTVSAIEITVDLTAQGRGISGRMLAAMRENARARGFTEVVAPVRPNAKHLEPAAPIDEYARRTREDGLPHDPWLRVHVRAGGVIEKVAHASMTVSGSTAQWREWTGLPFDEEGPVEVPGALVPVHCEPARGYGVYVEPNIWVRHTL
>CP029617.1|AZM53698.1|3343020_3343923_-|cellulose-binding-protein
MSSSGAWSSPHGFTTVRGRGYRPQQVEAYADGLSEERDVAWERAARLTVLAKDMEVQAEHLRDAVSRLAPQTYETLSGRARQILALAEAEAAEVRQAARAAAQAVTEEAEAGARGVREAARAYADEVAADADEWVRRRLLDDRATADDARISARRDVKEWRGEALAALREMRQRCEGLLAEQEKEQAERWEAAEREIAEREAVSDARDAERIAAAEARLSEAKRAFAEVEESARHGQEDAAARGAEVIAEARVREDRVTRETERLLREHGERWDEVRAHMDHVRSSLAALTGRTPAEETP
>CP029617.1|AZM53699.1|3344159_3347177_-|hypothetical-protein
MVTFAQAQERAEEWINGEVPGYQHREVRVREFDLGFVVWAEDRQDGPVSDGGAQRLVIARDSGEATLWPSLPVGEVIRRYEEEYGLPDAAPQDAVVPPPERVDLNQTSFLLTPPEWLQEAADKMGIPDRRGGGSSEGASPEGEREPSDAAASGEAVASSGASASSGASASSGASASSGAVDDGSSAPAEPVTPEGGTPWPAAAAQGGDAGPDRDDSLPATSPGVPVGATPWAGTDTNADEGEDLSVAAPATVFAPPLVSEDGDGPPSRGVAPDAKTALMHGGSHLPATAIAPALDGPSPAPGAPDASAYGYPQGPVASGGGAGSPTPPPAGPPTPPPPGADASAYGYPQGPGAPGGAGANAPLPPAGSPTPPPSGADASAYGYPQGPGAPGGAGANAPLPPAGSPLPPEGAPVPLPPPPGANAPLPPAGSPTPPPPSPGAPDASAYGYPQGPGAGSATPPPAGPPTPPPPGADASAYGYPQGPPPGSTPPPSGPGAPGTPAGGYVPTQLVSSLGPDGPKPPGTPAAPAPPGSPGAPGTPPGGVHHAATMFADPSLGGPGGPGAPKPPGPPGAPGTPAAPAPPGPPGAPGTPPGGVHHAATMFADASLGGVPGAPKPPGAPGAPGTPPPPGGGVHHAATMLAGPAVGGPGGPGMPPPPAPAPAPMRPGPAGQPYGYPQPPTGQPTVGPGYQAVLRYRAADGSEQQVIRRSAPGTPHPEWQILHELRGMNVPPQQVLELHTELESCELPGAYCARMIRETWPQARITSIAPYGRDHASRQGGMQQLLAHQGELHQVADGPARPAPVRAPLQPMPPAPPVPPEGVAQELAGAFGPGVFRFDQRAVSRQGVPDIVAHTLVVAGLPVDFGPFFWAQAQPGRPVPTLAELAQERGVQPASDAGSYLVMGSDFGRALCVQYGTANIVAVPVEAGPGGAPVPPQFVNTGLPEFARCLALLGRMWRLRFGLNQEQAGRWTVDFQNQLAALDPAALASPESWWSVLLEQMWDGLL
>CP029617.1|AZM53700.1|3347184_3348180_-|cell-wall-assembly-protein-Knr4
MTTGRLGQQSAPPNAAYAGQVVHFPDPVRAARHPRGVRVDERGYPDFSPYARAAAEIAEPPEGFGVDELRLTDYVSANAAMAADGHDLWDTIPAVATPHGWTWHHVPDSRRLELVPVEVKALLRHHGGIATTAVDQDKRGTRPLQETRPAHFGLPKAAVAVTEQQVQGVEEDLGYRLPGAYRSFLKAAGGCAPVGAALDAELGLLVDQPFFTVRDEAAVNDLVYVNKCLRDHLTKDYLGVGFVQGGLLAVKVKGDRVGSVWFCAYDDVRDVSEAAAWPPAERVRRLLLPCGDDFDAFLARLAGNPPELETVANLMVDGGFAHAVPVSSAGE
>CP029617.1|AZM53701.1|3348305_3348848_-|hypothetical-protein
MLVAMTVPEVVAMPGRVAVAMTVPAVVLMRGPAVPGPAAPADPLPVVNAVKDPVVVAVPGRVVGAEPGREAVAMPDPAAVGSKDPVVAAVADLAVAAVVDSVWPDVFCAMCIVLFPSPWARAPALAVVTACVPRPRVAGDSLPNGAGGAEAGALRHAWLPVGIRRTVTVRWLLVMEPEAR
>CP029617.1|AZM53702.1|3349493_3350009_+|SUKH-3-domain-containing-protein
MHADRTTTAAPAGHSTRFPVPVDAALRAAGWRQGRWDIKQAEIWADVLRRHTSPAGHRHRVFPAAVEAWAEFGGLHITPQGPGRQIAPATVHLDPMYGLHLARTLGDLGRALSTEVCPIGEETETQALLAIDTEGRVYSLDHSGDWFLGAHIDQALATLVTGARPTRLTAS
>CP029617.1|AZM53703.1|3350034_3351372_-|sensor-histidine-kinase
MTTTGDDHTAAMTGPWWWERRRAAALDVGLAVVSAAECGAEGVAFARDAGLPTAVGVGFGILAGAALLLRRRWPVAVVLISIAITPAQMGFLLTIVGLYTLAASELPRRITGVLAGMSMAGTLIVALVRASQDLAKEGSHPPIGSEFVPFFAVAAAIGVTAPPVLLGLYVGARRRLMESLRERADDLERELQLLAERAEERAEWARNEERTRIAREMHDVVAHRVSLMVVHAAALQAVARKDPEKAVKNAALVGDMGRQALTELRQMLGVLRTGDGDGAKSAKPVDPVPLAAVGHAAAAAAAASRAVDEDGPCLADVDELVGQSRDAGMAVDLSVEGEPRGYAADVEQTAYRVVQEALTNVHKHAAGAKTYVRLAHRVSEIAMQVENEPPPEAGPSDARLPSGGNGLVGMKERVLALGGVFVSGPTDGGGFRVSAVLPAAVPAAG
>CP029617.1|AZM53704.1|3351713_3353159_+|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MSATRPAVVVLAAGEGTRMKSDLPKVLHEICGRSLIGHVLHAASALTPERLVTVVGFQSEQVKEHLRAVAPDVRTAYQAEQNGTGHAVRIGLEELGGPVDGTVIVVCGDTPLLTGATLRKLAATHSGDGNAVTVLTAEVPDATGYGRIVRDVESGAVTAIVEHKDATEAQRAIREINSGVFAFDGRLLAEALGKVRTDNSQGEEYLTDVLGILREAGHRVGASVAGDHEEIAGINNRVQLAQARRTLNDRLLNEAMLAGVTVVDPASTWVDATVTFEQDAVVHPGTQLQGATHLGKGAEVGPHSRLKDTKVGPGARVDNSVSDSAEIGEGASVGPFAYLRPGTRLGVKAKAGTYVEMKNATVGDGSKVPHLSYVGDATIGEHSNIGAASVFVNYDGEAKHHTTVGSHCRTGSDNMFVAPVTVGDGAYTAAGSVITKDVPAGSLAVARGQQRNIEGWVARKRPGSAAAKAAEAASREADSAS
>CP029617.1|AZM53705.1|3353275_3354250_+|ribose-phosphate-diphosphokinase
MTGIKTTGEKKLMLFSGRAHPELAEEVAHKLGVGIVPTKAFDFANGEIYVRYQESARGADCFLIQSHTAPINKWIMEQLIMIDALKRASARSITVIVPFYGYARQDKKHRGREPISARLIADLMKTAGADRILTVDLHTDQIQGFFDGPVDHLFALPILADYVGAKVDRSKLTVVSPDAGRVRVADRWCDRLGAPLAIVHKRRDKDVANQVTVHEVVGEVKGRVCVLVDDMIDTGGTICAAADALFAHGAEDVIVTATHGVLSGPAADRLKNSKVSEFVFTDTLPTPGELELDKITVLSIAPTIANAVREVFEDGSVTSLFEEQ
>CP029617.1|AZM53706.1|3354414_3355011_+|50S-ribosomal-protein-L25
MSEVKISAETRNEFGKGASRRIRRENKVPGVLYGHGADPVHLTLPGHELLLALRTPNVLISLDVDGQKTQLAIPKAVQRDALRQGILKHVDLLLVRSGEKVTVEIPVHTEGELAPGSNLLEHVLSTLPVEAEATHIPTEVTVSIAGLEAGASILAKDIPLPSGSKLAIDEDAVVLQVLAAQAEEAPADSAEGDASAEA
>CP029617.1|AZM53707.1|3355084_3355687_+|aminoacyl-tRNA-hydrolase
MHVTTDANAPWLIAGLGNPGPEYAMNRHNVGFMVADLLAHRIGAKFKRAAKAQAQVVEGRIGAPGPASRRVILVKPMSYMNVSGGPVTALRDFYKVPTEHIVAVHDELDIDYGMLRLKLGGGDNGHNGLKSMTKAMGPDYHRVRFGIGRPPGRMQVADFVLKDFSSAERKELDYFVDRAADAVEALIIEGLERAQSTYNS

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Crispr_ID: CP029617_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029617_10

3473589-3473693

Orphan

Consensus_repeat	Method
GTTGCGCAGTTCCCCGCGCCCCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029617_10

>merge|CP029617|10|3473589-3473693|CRISPRCasFinder
GTTGCGCAGTTCCCCGCGCCCCTGGAAATCCCCCCGGCGCCGGGGGGCGGGGCGCCGGATCGTGCGGGAGTCGGGCTCACCGTCGCGCAGTTCCCCGCGCCCCTG

>CP029617|10|10|3473589-3473693|CRISPRCasFinder
GTTGCGCAGTTCCCCGCGCCCCTG	GAAATCCCCCCGGCGCCGGGGGGCGGGGCGCCGGATCGTGCGGGAGTCGGGCTCACC
GTCGCGCAGTTCCCCGCGCCCCTG

Protein	Signature genes	Signature genes Name	Protein_function
CP029617.1\|AZM53799.1\|3472179_3473571_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
CP029617.1\|AZM53795.1\|3462336_3463335_+\|iron-siderophore-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223687
CP029617.1\|AZM53804.1\|3479455_3481207_+\|(2,3-dihydroxybenzoyl)adenylate-synthase	unknown	unknown	gnl\|CDD\|223952
CP029617.1\|AZM53792.1\|3458646_3459930_+\|M6-family-metalloprotease-domain-containing-protein	unknown	unknown	gnl\|CDD\|274507
CP029617.1\|AZM53802.1\|3477267_3478083_+\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase	unknown	unknown	gnl\|CDD\|236190
CP029617.1\|AZM53790.1\|3456152_3457655_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
CP029617.1\|AZM53808.1\|3482966_3483455_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP029617.1\|AZM53805.1\|3481224_3481917_+\|isochorismatase	unknown	unknown	gnl\|CDD\|238495
CP029617.1\|AZM53797.1\|3464612_3472013_+\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237108
CP029617.1\|AZM53809.1\|3483573_3483987_+\|Ohr-subfamily-peroxiredoxin	unknown	unknown	gnl\|CDD\|274649
CP029617.1\|AZM53796.1\|3463321_3464476_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349921
CP029617.1\|AZM53803.1\|3478223_3479459_+\|isochorismate-synthase-DhbC	unknown	unknown	gnl\|CDD\|235886
CP029617.1\|AZM53794.1\|3461417_3462209_-\|Fe(3+)-dicitrate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
CP029617.1\|AZM53806.1\|3481933_3482170_+\|isochorismatase	unknown	unknown	gnl\|CDD\|225967
CP029617.1\|AZM53807.1\|3482179_3482983_-\|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	unknown	unknown	gnl\|CDD\|274422
CP029617.1\|AZM53801.1\|3474929_3477167_-\|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB	unknown	unknown	gnl\|CDD\|236720
CP029617.1\|AZM53800.1\|3473700_3474933_-\|enterochelin-esterase	unknown	unknown	gnl\|CDD\|236695
CP029617.1\|AZM53793.1\|3459916_3461092_-\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|237150
CP029617.1\|AZM53791.1\|3457728_3458385_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
CP029617.1\|AZM53798.1\|3472009_3472183_+\|MbtH-family-protein	unknown	unknown	gnl\|CDD\|377081

Protein	Function_ID	Function_description	E-value
CP029617.1\|AZM53799.1\|3472179_3473571_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.48291e-80
CP029617.1\|AZM53795.1\|3462336_3463335_+\|iron-siderophore-ABC-transporter-substrate-binding-protein	gnl\|CDD\|223687	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism].	9.17663e-57
CP029617.1\|AZM53804.1\|3479455_3481207_+\|(2,3-dihydroxybenzoyl)adenylate-synthase	gnl\|CDD\|223952	COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	0
CP029617.1\|AZM53792.1\|3458646_3459930_+\|M6-family-metalloprotease-domain-containing-protein	gnl\|CDD\|274507	TIGR03296, hypothetical_protein, M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than pfam05547.	3.90899e-53
CP029617.1\|AZM53802.1\|3477267_3478083_+\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase	gnl\|CDD\|236190	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated.	7.46238e-120
CP029617.1\|AZM53790.1\|3456152_3457655_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.9137e-66
CP029617.1\|AZM53808.1\|3482966_3483455_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.63531e-22
CP029617.1\|AZM53805.1\|3481224_3481917_+\|isochorismatase	gnl\|CDD\|238495	cd01013, isochorismatase, Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.	1.32136e-111
CP029617.1\|AZM53797.1\|3464612_3472013_+\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
CP029617.1\|AZM53809.1\|3483573_3483987_+\|Ohr-subfamily-peroxiredoxin	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	1.11892e-60
CP029617.1\|AZM53796.1\|3463321_3464476_-\|amidohydrolase	gnl\|CDD\|349921	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily. Peptidase M20 family, aminoacylase 1-like protein 2 (ACY1L2; amidohydrolase)-like subfamily. This group contains many uncharacterized proteins predicted as amidohydrolases, including gene products of abgA and abgB that catalyze the cleavage of p-aminobenzoyl-glutamate, a folate catabolite in Escherichia coli, to p-aminobenzoate and glutamate. p-Aminobenzoyl-glutamate utilization is catalyzed by the abg region gene product, AbgT. This subfamily includes Staphylococcus aureus antibiotic resistance factor HmrA that has been shown to participate in methicillin resistance mechanisms in vivo in the presence of beta-lactams. Aminoacylase 1 (ACY1) proteins are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	1.14771e-158
CP029617.1\|AZM53803.1\|3478223_3479459_+\|isochorismate-synthase-DhbC	gnl\|CDD\|235886	PRK06923, PRK06923, isochorismate synthase DhbC; Validated.	1.27463e-173
CP029617.1\|AZM53794.1\|3461417_3462209_-\|Fe(3+)-dicitrate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	4.66219e-113
CP029617.1\|AZM53806.1\|3481933_3482170_+\|isochorismatase	gnl\|CDD\|225967	COG3433, COG3433, Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism].	4.47272e-18
CP029617.1\|AZM53807.1\|3482179_3482983_-\|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	gnl\|CDD\|274422	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083. This protein family pulls together several groups of proteins, each very different from the others. They share in common three conserved regions. The first is a region of about 38 amino acids, nearly always at the N-terminus of a protein. This region has a bulky hydrophobic residue, usually Trp, at position 29, and a His residue at position 37 that is invariant, so far, in over 150 instances. The second conserved region has a motif [DE]xxxHxxD. The third conserved region contains a hydrophobic patch and a well-conserved Arg residue. Most examples are found in the Actinobacteria, including the genera Mycobacterium, Corynebacterium, Streptomyces, Nocardia, Frankia, etc. The pattern of near-invariant residues against a backdrop of extreme sequence divergence suggests enzymatic activity and conservation of active site residues.	4.69855e-14
CP029617.1\|AZM53801.1\|3474929_3477167_-\|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB	gnl\|CDD\|236720	PRK10577, PRK10577, Fe(3+)-hydroxamate ABC transporter permease FhuB.	5.10829e-135
CP029617.1\|AZM53800.1\|3473700_3474933_-\|enterochelin-esterase	gnl\|CDD\|236695	PRK10439, PRK10439, enterobactin/ferric enterobactin esterase; Provisional.	1.22416e-76
CP029617.1\|AZM53793.1\|3459916_3461092_-\|transcription-termination-factor-Rho	gnl\|CDD\|237150	PRK12608, PRK12608, transcription termination factor Rho; Provisional.	0
CP029617.1\|AZM53791.1\|3457728_3458385_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.03336e-09
CP029617.1\|AZM53798.1\|3472009_3472183_+\|MbtH-family-protein	gnl\|CDD\|377081	pfam03621, MbtH, MbtH-like protein. This domain is found in the MbtH protein as well as at the N-terminus of the antibiotic synthesis protein NIKP1. MbtH and its homologs were first noted in gene clusters involved in non-ribosomal peptides and other secondary metabolites by Quadri et al. This domain is about 70 amino acids long and contains 3 fully conserved tryptophan residues. The structure of the PA2412 protein shows it adopts a beta-beta-beta-alpha-alpha topology with the short C-terminal helix forming the tip of an overall arrowhead shape. MbtH proteins have been shown to be required for the synthesis of antibiotics, siderophores and glycopeptidolipids.	1.09731e-19

>CP029617.1|AZM53799.1|3472179_3473571_+|MFS-transporter
MSGGLLVRPRIRPRVAVVLVYTAAMCMNGLDSTIVNPALFTIAGDFGRPVSAANTVETAFLVALALALPVAGWLGDRLGTKRVFLGALALFTAASAVCGLAPDLTTLVVARAVQGLAGGLLTPVGMTLLFRAFPPEERVRLSKVLIVPTALMPALGPPLGGFLTEHLSWRWLFFVNVPVGAAAVLLGAVALREHVEGTKGPFDRVGFLLATPALGLLTYALGFGPSQGWSRPSVAVSAVVGAALLVATVVHQLRVREPLLRLRLLADRVYGAASALALVSAAGLMGVLFVFPLLYQAALGASALDAGLSVFPEALGLMLASQAVDRLLPRLGPRRLAVPALLLAGGVFAALAAPGVAENAWAVRGLMFAVGLVLGTAVLTIQIAGFEGIAPADMGQAMGLFQIVRTLGGAVGIAACAALIGGHGVGFSDAGPYRVAVLVTAGFVAAGAGLAVRLPRGLAGAPV
>CP029617.1|AZM53798.1|3472009_3472183_+|MbtH-family-protein
MSDAPANPFDAEGEFLILANDRGEHSLWPLFAEVPDGWAAVHGPCPRQSALAWVSGR
>CP029617.1|AZM53797.1|3464612_3472013_+|non-ribosomal-peptide-synthetase
MHQRPDRLPLLTAQAGILYAQQLAPESTALNTADRVEIQGPLDTALFETALRRTMDEAETLALRVGEDADGTPWQEVAPAAAPVRLHRLDLRTEADPERAAEAWMRADLARPVDLTRPADGANGLVTQALIRLTDDRHWWYQRVHHFAVDAYALQLIGSRVAELYTALATGQQPLPERRFAPLAELTDDERHYLDGEQYATDRAFWAERTAGHTPPVTPATRAARPGAPDLPRRRAADLPDGSFERISRAAQAVKATWAEVVIAATAGHLHRVTGAEEIVLGLPLTNRRGPAALRTPAMTVNVMPLRIAVRPRDTGAELLRRVVLEIRAVRRHQRYPQADLRRDLALGTAGEPLTGPMVNIKPFETDLDFADLPGTVHNLAAGPVEDLAVGAAPRADGTLRLTLDAHAGRYGETELARHERTLLTYLDALTDLLLTDPHRPIGTLDLLTPDEIRAATAGRAEPPAEHTLPEAFAAQAARTPDAVAVRSGGAALTFRELDEAANRLAHRLATDLAPGTPVALALPRSTGTVVALLAVLKARGVCQPLDLGHPAARTLDVLADARPAYVIGTRATLAALPDHQLPVLALDDPDTAAALADLPATPLTASAPAASPRPGDPAYVIHTSGSTGRPKGVLVTHASLANLLAGHGEDHVGPALARTGRDRLRVAHSASFAFDASWDPVLWMVHGHELHLLDDAAYRDPAVLAAYVDEHRVDYLDVTPSYAEALVAEGLLDEGRHRPAVVVVGGEAVPGPLWERLASTPGTRPINLYGPTETTVDAYYWLPGPDGSTTGHPVRASRVYVLDSSLRPAPPGVTGELYVAGACLARGYLGRPDLTAERFVADPFGPLHGDPGGRMYRTGDLVRRRDDGTLEFLGRGDDQVKIRGFRVELGEIQARLATHPAVAQAAVIARDTPHGKRLLAYAVPRGAANAPGEAASAQDAPGRGTPTGAPVTPADLRAHLAEALPAHMVPATVTLLDALPRTANDKLDHRALPDPEPALTPGADSPADPHTEVLCGLFADVLGLESRWPSPDATFFDLGGHSLLAGRLAARIRERFGASVGIADVFKAPTPAALAALVRTSDITSEGTAPVADSVPVVPRTDTLPLSPAQQRLWFLHRLEGPSPTYNIPLVLTLDGPVDHRALTLALHDLSARHETLRTVYPTTDNAPESGAANAPDDRPHQRVLASDHPLAQPVLHHAPLVPGALPEAVRHCFDLAAEPPLRATLFTDPQDPTRHTLLLLLHHIAGDGASTTPLSRDLATAYTARGAGHAPAFAPLPFQYADHAAHQQKLLADGLADTHLAYWKDALAGLPDQLELPTDRPRPPVASSEGDTVPFSLGPAAHRALKQLAAATGTTVFMTVQAGLAALLTRHGCGTDIPLGTPVAGRDDDATADLVGFFTNTVVLRTDTSGDPGFRTLLDRVRDATLAAYAHDALPFDQLVEELNPPRSLARHPLFQVMLAWQSIPDGPFALGPDTTARLTAVPSGTAKFDLTLNAGELAGEQGISGFLEFRTDLFDRTTAQALADRLTRLLTAAAATPDTPLGLLPLLGADEHHHALVTVNDQGPRTSSTPATLADVYETAAAQHPHRTAVSHDGHTLTYAELSARAHRLARLLAARGIGPGAIVALALPRSADLVTGLLAVALSGAAYLPLDPDYPADRLSYMLGDARPAALLTDTATAPRLPAEAHALPLIAVDGDAPAAYDESPLAQSDRTRPLTPDDPAYVIYTSGSTGRPKGVVVTHHNVTRLLTATDHWFRFDEHDVWTLFHSYAFDFSVWELWGALGFGGRLVVVPHLTSRDPAAFRALLADERVTVLNQTPSAFYQLAAADREARDGRELALRYVVFGGEALELARLDEWYERHADDSPTLVNMYGITETTVHVSYFALDRATAAASTSSTIGVNIPDLRVYVLDDRLNPCPPGVTGEMYVAGEGLARGYLGRPDLTATRFVADPYAHLFGERGARMYRSGDLARRRADGSLEYFGRADHQVKIRGFRIELGEIEAVLAAHPAVADAAVVVREDVPGDKRLVGYAVTATGTATPTTATATPAELREHAAGELPAHMVPSAVVLLDRLPLTSNGKLDRKALPAPERPTAATAGRAPRTPREEQLCAIFAEVLGLAAGSVGIDGNFFELGGHSLLAVRLAGRVQAAFGTEVSIGTVFQSPTPAGLDAFLDSGGGQAGPLDVLLPLRPAREGDRAPLHCVHPAGGLSWCYAGLIRHLPADVPIYGLQAQGVGAATAADPLPGTLEELAAHYVSRLREVQPTGPYRLLGWSTGGIIAHAMATHLQELGHEVELLAILDAYPAEGFRELPESDEAEALESLLTMGGHGPDSLAGADLTTENVIGVLRREGSPLAALPPATFEALRDIYLNTNHLVRGYDHRRFDGDVLFFRATVDTIDDTLTPETWTPYVGGRIANTDVACSHKDMTLPEPIAHIARVVAARLTDGPGPMDRPTELETPRS
>CP029617.1|AZM53796.1|3463321_3464476_-|amidohydrolase
MEKTTPMVFKTALRKEIEAHRDDLLALSARIHAHPETAFEEHRAAAWCAELLAAQGFDVTMPAYGLDTAMSATVGSGPVTVALVCEYDALPGLGHACGHNLIAAAGIGAALALAPYADELGLTVRVLGTPAEERGAGKALLIEAGAFDGVDAAMMVHPCPFELADFRSFALGTLSVTYKGKSAHPSLNPYEGRNAADALTVAQVALGLLRQQLPPQWRVHGITTAAGTAPNAIPDRATAEYEIRALAAEDLRELRERVENCFRAGALATGCDVTLERPEPDYLDFRGDPELIALWKANAQTLGRAEPVEREPFACTDMGNVSHLVPSIHPVLDISGGACGPHEAQFAAAAVSPAAEQALLDGALGMAWTAADLALARLAAATSS
>CP029617.1|AZM53795.1|3462336_3463335_+|iron-siderophore-ABC-transporter-substrate-binding-protein
MTVPRRPLSPATRRATQAVAALGAAALLLTGCGSDDGSDKASSGKGGSDSAGTRTIKDATGTAVKVPAHPKRIVTLTQEDLDAVLALGVKPVGITNGQGLDKPPAYLADKVKGIDVVGNLLQPVMDKVVAAKPDLILAGDMQDEQVLKQLREITPATVVTMAPTDDWKLTLRGIGNAVGELPKANKVIADHESAAKAAGEKLGANKGAEVSIVRWNPDGPSWMESKQFASGVALEMGLKRPKNQNKDGNAHTPSLSLEKINEIDGDWLFLSTLTSDGEKALKDVQKKPAYKDLGAVKKKHVVTVDGSVWSTRGGPLAADEVMDDISEALKKK
>CP029617.1|AZM53794.1|3461417_3462209_-|Fe(3+)-dicitrate-ABC-transporter-ATP-binding-protein
MELRVEQLTAGYGGAHTAVDGVDLTVGSGQVVAIVGPNGCGKSTLLRCMARLHRPDAGRVFAGDADIWRLKQRETAHRVALLPQSPQAPEAVTVAGLVRYGRHPHQGLFRQWSAEDERAVTRALEATGTAELAERRLDQLSGGQRQRCWLAMALAQETPVVLLDEPTSALDIGHAVEVLDLVREVAAEGRTIVMVVHDLAAAARYADVVVAMLAGRVVGVGAPRDVIDEGLVMTLYGIEAEILRAGADGAPVVVPLARAAARG
>CP029617.1|AZM53793.1|3459916_3461092_-|transcription-termination-factor-Rho
MTATLTEAPTSTPLTCKGVLDIARDGRGFLRSEGCLPASADVQVPAPLIRRLGLRGGDFVDGECAGRARTLTGVHRVNGRVPEGLHGRPRFGELTPLHPRERLRLESAGGAVTGRLVDLVAPVGKGQRGLIVAPPKTGKTVLLQQIAAAIAENHPECHLMVVLLDERPEEVTDMLRSVRGEVLSSTFDRPAKQHIALAELAVERAKRLVEEGRDVVMLFDSLTRLCRAYNNAAASGGKTLSGGVDAAAIQGPKRLFGAARLAEEGGSLTMLATVLVETGSRADDYYFEELKGTGNMELRLDRVIADRRLFPAVDITPSGTRREELLLTGDELTAVRGLRRALLGRDSHSSLETVIDRIKKTPSNAAFLRQVQQTVPGAGSASAAGNGATAA
>CP029617.1|AZM53792.1|3458646_3459930_+|M6-family-metalloprotease-domain-containing-protein
MQQPIRRRIRPARRGVALASVTVLALAVTTSASTGRLMEDSPSAAGPVSMARGSTLGPCMISGTMGVQMSEGMPTPPGYSRSTGTVRALNLMVDFSDAPGEGSAMDRLAEFFPQTSKWFRTSSYGRLDYRPESPVPDWLRMPKSFAEYGIERGAPFDPGYRELVEDIVEAADPDVDFRAYDLVNVLVTPNAGPSALDTVLSVTFAGNHEAPVADGVPVANASFVYSRQDDGSGSYHETGYRVLPHENGHVFGLPDLYTQDGGGAVGHWDIMSEDWGANNDLLAWHKWKLGWLDDDQIGCAAKPGGSEHVLSPLARSGGTKLAFVPLNAKTGYAIEARTPGGNDEAVCKPGVLVYRVDADVDTGHGPVTVFDSAGDSGGCTRRPNVHAELSDAPYGPGETFTDRETGVRVTVAEVTDDGDYRVHVTRP
>CP029617.1|AZM53791.1|3457728_3458385_-|TetR-family-transcriptional-regulator
MDTATAPQRRAARPRADALRNRERIVAAAREMFVEYGPDVPLDEVARRAGVGNATVYRHFADRDELVRQVVRYVTGRVADLAEQGIATADADKDAAFTALRTFVHAAADERIGALCPMLQSGFDPDHPDLIDARERMERSIEGLVERARAAGQLRTDIALGDLMIALSQLGRPLPGTPCPNMDRFVHRHLQLFLDGLMAPARSELPGEAATLEDLRQR
>CP029617.1|AZM53790.1|3456152_3457655_-|MFS-transporter
MSEADPRRWKALVFIALAQLMVVLDATIVNIALPSAQEDLGISDGNRQWVITAYALAFGGLLLFGGRIADLWGRKRTFVTGLIGFAVASALGGAATGEAMMLGARALQGVFGALLAPAALSLLAVMFTDAKERAKAFGIYGAIAGGGGAVGLILGGFLTEYLNWRWTFFVNIPFAVIAALGAYFVIREPAGTRNRSPLDIPGVVLSTLGLVTLVYGFTRAESEGWSDSVTIGAFVASVVLLAAFVLTEAKVKSPLLPLRVLTERNRGGVYLSLGLAIIAMFGLFLFLTYYLQIVKGYSPVKTGFAFLPMIVGMIVGSTQLGARLMTRVPPRLLMAPGFLLAALGMLLLTQLEIGTSYAGLILPAQLMLGLGMGTAFMPAMSLSTHGVEARDAGVASAMVNTSQQVGGAIGTALLNTIAASATSAYLVDHVAEGGNLKLVQAQAMVEGYTSAIWWAVGILALAALIAATFINTGHQGGPGASGDADSEGTEGEVKIPVMAH
>CP029617.1|AZM53800.1|3473700_3474933_-|enterochelin-esterase
MTPPNPREATPVRSPLLRTLLHAVRARVPGAERDFWNRVETTGTPLVEPDPSGDPAHRLVTFLWRDDPARPATDVLALLHTVTDRDRHAGDLTPHLMERLPGTDVWALGHRLRADHRASYQFYVAHGTRQDTLRTDREAWLRVLAEAVPDPLNGDPRLPARDGRNPASVMSLPDAPPQPYVGRRARAAGKSTEAEVDGRNVTVHLPPERPRALAVLLDGEMWGPVLGIGATLDALHADGGLPPAAALLVDTMGRRMEDLSCSGAFVDWLADVLLPWAADAYGVDAPRERTVIAGQSAGGLTAAYAVHRRPDRFGAALSQSGSFWWPDENAPDGRGPEWLTREYARTPHRPVRLHLEVGAQEWMLLAENRRLRNVLRARGYEVTYEEFNGGHDYACWRGGLATGLASLLPG
>CP029617.1|AZM53801.1|3474929_3477167_-|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB
MRMPTAGTTPPAPQLPESARELTETEGRGPAPERAARRKVGLAVTGFTLALLLLVALSLSVGAGEVGPGGVLDYLLNRRGARGDSRLALVVGDLRVPRTLTALLVGGALGVAGCLLQAVTRNPLAETGLLGVNAGASLGVVAGIALLGFDSGYAYLGCAFVGAVVASGLVLLIAGRKGGGSPMRLVLAGSALGATFGGLTSVIVVNSAETYDRFRFWVLGSLAGVEGYGELGRLAPVLAAGFLVALLVARPLSALALGDDLARSLGHRPPVIRTVVAVGVTLLTAAAVALAGPISFLGLLAGFLARAVAGTRLPARLLLAGLVGACVLTVSDVAARVVARPYEAPVSVIVALIGAPVLILIVRSKSLATMGMTDPATDESAPSKRSRSKRAPAKSTPAKPAPADTYVLRPGPFSFLLARRATLASLLLAALLVVAVVLSAYAGQSDMGVSRTFRAVFGYGDHFDVLLVQKFRLGRIVAGLTAGAALGLAGCLTQTLARNRLATPELLGVNDGATAAVLVSVTFSASGSFGAWWAGPIGALVAVVVVTVVSGGLGQRGYRVLVVGLAMSALASAVTQVVLSRRSLNSASSLYVWTSGSLNGRGYSVAVPVLVGLAVLVPLALAVARHLGVLRFDDDTAASLGSHAGRTRLICLLLAVALAGLAVGVCGPVGFVALASPVIASRLAGPLRVPLVGSMLTGAVLVVAADTLGRIVFDGSELPVGVVTTVLGGPFLLWVLLGRSAATRV
>CP029617.1|AZM53802.1|3477267_3478083_+|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase
MPDHIPNEPYAEGEFAGRTALVTGAGQGIGAAVATALAARGAHVVATDRSARGVEELASAGQALAGTVTPRVMDVTDPAAVTSVIDGVVRDHGALDLLVNVAGILRTAPVAELTDADWADTFAVNTTGVFHTSRAAASHMTARGSGCIITVASNAAGIPRTGMAAYAASKAAATMFTKCLGLEVARSGVRCNVVAPGSTDTEMQRALWPEGQAEVPPSVVDGDPATYRTGIPLGRIAAPQDIADAVLFLASERARHVTLQELYVDGGASLR
>CP029617.1|AZM53803.1|3478223_3479459_+|isochorismate-synthase-DhbC
MSTAPEVATHVTTAEQAHPAVGAATALLDAYRPGRRFLATPTRTLLTEGGVHAHVPHDERPLPLRVAATLADARRAGLTKPYVVGAIPFDHSAPAALAVPEAVRTAPPLTADPLIALPAETPDATDFRIRPVPAPEEYGAGVAAAVERMWRGDFSKVVLARTLELTAPAPLNIPLMLQRLARRDPSGYTFALPTAPGRTLIGASPELLVSRRGHQVVANPLAGSTPRSDDLAEDVRRAAALLESAKDLHEHAVVVDAVHQALATFCTDLTVPARPTLIRTATMWHLSTTVTGTLAAPAGTGSTGGTGASALELACALHPTPAVCGTPTATAREVIRETEPFDRGFFTGMIGWGDANGDGEWVVTIRCAEAEERSLRLYAGAGVVAASDPAAETAETGAKFRTFLNAVGAEL
>CP029617.1|AZM53804.1|3479455_3481207_+|(2,3-dihydroxybenzoyl)adenylate-synthase
MSGAEAPTWPEEFAARYRAAGHWRGETFGQLLRDRAAEHPDRIAIVDPTGGRRWTYGQLDRRADRLAAGLLARGIVKGDKVVVQLPNIAEFFETIFALFRIGALPVFALPAHRETEIRYFCEFTEAAAYVIPAEHGGFDYRDLAAKVLTEVPALRHVFVAAGDPGAFEALSDVPLDPAGPLAVPDPPAPGDLAFLQLSGGSTGVPKLIPRTHDDYIYSLRGSNELCGVDADSVYLVALPAAHNFPLSSPGSLGALYAGARVVLCPQPGPEVAFPLIESEGVTITGLVPPLALVWTEAAPSSAYDLSSLEVLLVGGAKFSEEAARRVGPALGCTLQQVFGMAEGLVNYTRLDDPAETIVTTQGRPISPDDEIRVVDDEDEDLPVGATGHLLTRGPYTIRGYWKAPEHNARSFTADGFYRTGDVVRLTETGHLVVEGRAKDQINRGGEKIAAEEVENHLLAHPSVHDANVVAEPDPYLGERTCAYVILRKGAEPLKPVAVKKFVRGRGLAAYKVPDRVEFVESFPRTGVGKISKKDLRAAASNGPDSAGGWSGSASAQPDAVAAAPPASTPSASNPSPSTPPAQA
>CP029617.1|AZM53805.1|3481224_3481917_+|isochorismatase
MALPAITPYPMPSADELPANRVDWKVDPSRAVLLVHDLQNYFLSAYDRDASPVPELLAHVAELKRRADRLGVPVLHTAQPGGQTPEERGLQQDFWGPGLPADEQAAAIAPEIGPAPAETILTKWKYSGFVRTDLLERLREQGRDQLVITGVYAHIGVLMTACDAWMQDIQAFVVADAVADFSADDHAMALRWAAGKCAVVTTTEAVFGEDGGDGSHGTTDLGGTTAPDQA
>CP029617.1|AZM53806.1|3481933_3482170_+|isochorismatase
MTSPLTLDQLRTDVADVLGEDPADIPADENLVDYGLDSVRLMTLLGRWRRDHGVTASFADLAEEPALEKWVPLLTREG
>CP029617.1|AZM53807.1|3482179_3482983_-|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme
MTVFGEGGHGGAQEQWAVAAVAAESRRFVALVEGADLSVSVPGCPGWTLLDLVRHTGSLQRWFSVLLRTHVQEPPATRAVELELPERDDAYGAWLAASAELAARAFAEVDLDAPMWTWGADPYARFWVRRMLHETLVHRVDAESALGLPSVIESASAADGVDEFLVNLPFATPFAPGVARLRGQGEVIRFRAVDSGREWLVRLRPDGFGLVGEARDGRAVEAADASVHGSAADLLLLLYGRLGRDSGGFEVAGDGELLERWFANSAF
>CP029617.1|AZM53808.1|3482966_3483455_-|MarR-family-transcriptional-regulator
METRVPSDEDFLRLDHQICFSLHAAARAFNGVYRAALKDLGLTYPQYLVMLVLWEHGELPVKKIGERLRLDSGTLSPLLKRLEAAGHVERRRSAEDERSVVVRLTGQGGALRETALAVPRAIAESTGLALDEVRELRDRLNTLTAALDAAELGGGAADDCVR
>CP029617.1|AZM53809.1|3483573_3483987_+|Ohr-subfamily-peroxiredoxin
MDALYTAVATANGREGRAVSSDGQIDLPLGFPAALGGNGKGTNPEQLFAAGYAACFASAMGNIARQEKIDVSDVSVTAEVSIGKDTDGGFGLSVIMRAELPDHLQGPAGEDLLKKTHAYCPYSKATRGNIPVELVIE

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Crispr_ID: CP029617_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029617_11

3656492-3656573

Orphan

Consensus_repeat	Method
GCGGCGAAGAGCGGTCACCTCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029617_11

>merge|CP029617|11|3656492-3656573|CRISPRCasFinder
GCGGCGAAGAGCGGTCACCTCTGCGGCGCGGGTAAACCGGTGGGAGGGTGGGGCAACCGCGGCGAAGAGCGGTCACCCCTGC

>CP029617|11|11|3656492-3656573|CRISPRCasFinder
GCGGCGAAGAGCGGTCACCTCTGC	GGCGCGGGTAAACCGGTGGGAGGGTGGGGCAACC
GCGGCGAAGAGCGGTCACCCCTGC

Protein	Signature genes	Signature genes Name	Protein_function
CP029617.1\|AZM57720.1\|3662159_3663128_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
CP029617.1\|AZM53927.1\|3645540_3646989_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225161
CP029617.1\|AZM53933.1\|3658359_3658869_+\|DUF2771-domain-containing-protein	unknown	unknown	unknown
CP029617.1\|AZM53935.1\|3661131_3661383_+\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM53938.1\|3664197_3665106_+\|cobalamin/Fe(3+)-siderophore-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
CP029617.1\|AZM53926.1\|3645258_3645441_+\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	gnl\|CDD\|310261
CP029617.1\|AZM53936.1\|3661379_3662015_-\|haloacid-dehalogenase	unknown	unknown	gnl\|CDD\|372595
CP029617.1\|AZM53928.1\|3647211_3647469_+\|DUF2530-domain-containing-protein	unknown	unknown	gnl\|CDD\|378488
CP029617.1\|AZM53930.1\|3649974_3650814_-\|calcium-binding-protein	unknown	unknown	unknown
CP029617.1\|AZM57718.1\|3658912_3659590_+\|futalosine-hydrolase	unknown	unknown	gnl\|CDD\|236194
CP029617.1\|AZM53937.1\|3663124_3664201_+\|iron-ABC-transporter	unknown	unknown	gnl\|CDD\|227119
CP029617.1\|AZM53929.1\|3647564_3649967_+\|magnesium-transporting-ATPase	unknown	unknown	gnl\|CDD\|319795
CP029617.1\|AZM53923.1\|3642541_3643132_-\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|274058
CP029617.1\|AZM53924.1\|3643171_3644446_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
CP029617.1\|AZM57717.1\|3656790_3658254_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
CP029617.1\|AZM53934.1\|3660547_3660931_-\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
CP029617.1\|AZM53931.1\|3651055_3654193_-\|molecular-chaperone-Hsp90	unknown	unknown	unknown
CP029617.1\|AZM57719.1\|3659603_3660464_+\|1,4-dihydroxy-6-naphthoate-synthase	unknown	unknown	gnl\|CDD\|270353
CP029617.1\|AZM53932.1\|3655086_3656025_-\|DUF3027-domain-containing-protein	unknown	unknown	gnl\|CDD\|378605
CP029617.1\|AZM53925.1\|3644677_3645115_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670

Protein	Function_ID	Function_description	E-value
CP029617.1\|AZM57720.1\|3662159_3663128_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	2.76853e-80
CP029617.1\|AZM53927.1\|3645540_3646989_-\|MFS-transporter	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.00935e-109
CP029617.1\|AZM53938.1\|3664197_3665106_+\|cobalamin/Fe(3+)-siderophore-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	7.29432e-138
CP029617.1\|AZM53926.1\|3645258_3645441_+\|ribbon-helix-helix-protein,-CopG-family	gnl\|CDD\|310261	pfam05534, HicB, HicB family. This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches.	6.4526e-05
CP029617.1\|AZM53936.1\|3661379_3662015_-\|haloacid-dehalogenase	gnl\|CDD\|372595	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.	2.44416e-22
CP029617.1\|AZM53928.1\|3647211_3647469_+\|DUF2530-domain-containing-protein	gnl\|CDD\|378488	pfam10745, DUF2530, Protein of unknown function (DUF2530). This family of proteins with unknown function appears to be restricted to mycobacteria.	2.1776e-05
CP029617.1\|AZM57718.1\|3658912_3659590_+\|futalosine-hydrolase	gnl\|CDD\|236194	PRK08236, PRK08236, hypothetical protein; Provisional.	1.36576e-84
CP029617.1\|AZM53937.1\|3663124_3664201_+\|iron-ABC-transporter	gnl\|CDD\|227119	COG4779, FepG, ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism].	1.66931e-74
CP029617.1\|AZM53929.1\|3647564_3649967_+\|magnesium-transporting-ATPase	gnl\|CDD\|319795	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7. This subfamily contains P-type ATPase transporters of unknown function, similar to Streptococcus pneumoniae Exp7. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids. They are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle. A general characteristic of P-type ATPases is a bundle of transmembrane helices which make up the transport path, and three domains on the cytoplasmic side of the membrane. Members include pumps that transport various light metal ions, such as H(+), Na(+), K(+), Ca(2+), and Mg(2+), pumps that transport indispensable trace elements, such as Zn(2+) and Cu(2+), pumps that remove toxic heavy metal ions, such as Cd(2+), and pumps such as aminophospholipid translocases which transport phosphatidylserine and phosphatidylethanolamine.	0
CP029617.1\|AZM53923.1\|3642541_3643132_-\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|274058	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. [Transcription, RNA processing].	6.39229e-40
CP029617.1\|AZM53924.1\|3643171_3644446_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.78019e-78
CP029617.1\|AZM57717.1\|3656790_3658254_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.11949e-16
CP029617.1\|AZM53934.1\|3660547_3660931_-\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	4.21494e-27
CP029617.1\|AZM57719.1\|3659603_3660464_+\|1,4-dihydroxy-6-naphthoate-synthase	gnl\|CDD\|270353	cd13635, PBP2_Ttha1568_Mqnd, A menaquinone biosynthetic enzyme exhibits the type 2 periplasmic-binding protein fold. This group includes Ttha1568 (MqnD) from Thermus thermophilies HB8, an enzyme within an alternative menaquinone biosynthetic pathway that catalyzes the conversion of cyclic de-hypoxanthine futalosine to 1,4-dihydroxy-6-naphthoate. Menaquinone (MK; vitamin K) is an essential lipid-soluble carrier that shuttles electrons between membrane-bound protein complexes in the electron transport chain. Ttha1568 has significant structural homology with the members of type 2 periplasmic-binding fold protein superfamily. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.38531e-133
CP029617.1\|AZM53932.1\|3655086_3656025_-\|DUF3027-domain-containing-protein	gnl\|CDD\|378605	pfam11228, DUF3027, Protein of unknown function (DUF3027). This family of proteins with unknown function appears to be restricted to Actinobacteria.	7.03986e-102
CP029617.1\|AZM53925.1\|3644677_3645115_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.67018e-18

>CP029617.1|AZM53932.1|3655086_3656025_-|DUF3027-domain-containing-protein
MSAATTRSRTPRTPRTPDRLCAEAVGLARAAAEEAAAPGVVGEHVEVVVEGDRVVTHMFECKEFGYRGWRWAVTVARASRAKVVTLDETVLLPGPDALLAPEWVPWSERLRPGDMGPGDLLPTDAEDLRLEPGFTGEEEPPPNSIVSQEMAELAEAEDAEVTAGSPAELLVAPARGSIAAIADELGMRRARVLSRYGLHVAADRWEESHGAKTPMAQAAPAACVSCGFLVAIGGSLGQAFGVCANEFGPADGHVVSLSYGCGGHSEAAVMPKPPRPAPPVLDETRVDVLPLRPSADSGSVSVEGPGEELGHS
>CP029617.1|AZM53931.1|3651055_3654193_-|molecular-chaperone-Hsp90
MSKTVRPAAEGTDPFGTARLRRGVLDAWAAAPARFREDANAEEDLALGGYRDRLVVELAQNASDAAARAGVPGRLALTLRDGVLAAANRGAPLDAAGVESLSTLRASAKREESAEQRGQSVGRFGVGFAAVLAVSDEPAVVGRTGGVRWSLSEARELAAETARFSPGLGDEIRRRDGHVPLLRLPLAAEGTAPEGYDTVVILPLRDAAAEDLVARLLGEVDDALLLALPGLEEVTIETPDGATRATRTLRRRAEAPYTVVEDSREGTTRWRTVSRQGPLDAALLKDRPVEERLRPHWAVTWAVPADSAGAPERPRTTPVVHAPTPSDEPLGVPALLIASFPLDTARRHAAPGPLTDFLVQRAADAYVELLGDWRPVGEEIIGLVPGPLGQSELDGALRQAVLERLPRTSFLPPALPRVEDDEDGLPETLRPRDAEVVEAAGADTVRVLAEVLPSLLPAGLERRAELRTLGVARVPLTEAIDRLAGLEREPDWWRRLYDTLAGVDPDRLSGLPVPLADGRTTIGPRQVLLPAPGDERDPASLARLGLKVAHPEAAHPLLEKLGALPATPRAVLTTPQVRAAVAASLDDDTWDEDALDAEELADVVLALVRDANLAPGDEPWLAALALPDEDGELTPAGELVLPGSDFAQVMREDELALVEQELADRWGEQPLAACGVLATFALVRATDVVLDPDELEPRDGDFAEPDDAGLLDAVDVWCEDLLDRLPGTPVPPVATEVVAVRDLDLVDDECWPRALAMLSRPPLRDALTQPLRVLLPDGTTQTVRSYTAWWLRGHPVLDGRRPAGLRAEGSDPLLAGLYDAADASGFGDEQVLRALGVRTSVSALLEEPGGAAELLDRLADPERTVSPGQLHALYGALADLDPEQVTLPDELRAVVDGEVVVVDAADAVVADAPDLLPLAGAVALLPVDPRKAGDLAELFQVRRLSETAAVDPAGQGVERAVPEPVRILLGATTPHTYVEHDELIAGGVELDWRRTPDGTVHAATLEGVAAGLAWAAGQWPRRFEVAALLEDPSRTAELARDRWFD
>CP029617.1|AZM53930.1|3649974_3650814_-|calcium-binding-protein
MRIRATVAALSGTLALSALALPAAQAADGPNLPKLDALVAKAPADEVEGDTKITKVTVNGGKAIVLGTTEKKKFTIDVTATDPEGIFGADAFLWHGTDLDSENGIDGLMISDGDAKCTVVNATTSTCSVAVTADPKSDFYSNIVAGKWHVGASAIGDDGDFISKDKAPSDARVLRAAKLTTNASPEPVKKGKTITVTGALTRANWETYKYAGYTDQSVKLEFKKKGSSTYSTVKTVKSGSKGALKTTVTASADGNYRYVFAGTSTTAPVTATSDAIDVQ
>CP029617.1|AZM53929.1|3647564_3649967_+|magnesium-transporting-ATPase
MTHIDAGAELDPVHPVPPPEGRPRGLSAAEVAERVARGEVNDVPVRSSRSLAEIIRANVFTRFNAIIGVLWVIMLFVAPIQDSLFGFVIVANTGIGIIQEWRAKKTLDSLAVIGEAKPTVRRDGRAAEISTSEIVLGDLVELGPGDKIPVDGEAVETESLEIDESLLTGEADPVVKKPGDQMMSGSFVVAGGGSFTATKVGREAYAAQLAEEASRFTLVHSELRSGISTILKYVTWLMVPTSIGLVISQLVVKDDNFKESIAYTVGGIVPMIPEGLVLLTSVAFAIGVIRLGRKQCLVQELPAIEGLARVDTVCLDKTGTLTEGGMDVTELRPLNGSDEEYVRKVLGALGESDPRPNASLQAIIDAYPDSEEWRCTESLPFSSARKYSGASFSEGDGTASAWLLGAPDVLLPDDDPALAEIEELNQQGLRVLLLARAAGDLDDPDVADRADATALVVLEQRLRPDAADTLRYFEEQDVAAKVISGDNAVSVSAVAGKLGLPGAQNTVDARRLPAEKDEMARALDDNAVFGRVTPQQKRDMVGALQSRGHTVAMTGDGVNDVLALKDADIGVSMGSGSEATRAVAQIVLLNNSFATLPSVVAEGRRVIGNITRVATLFLVKTVYSVILALLVVCSQVEYLFLPRHLTLLSTLTIGVPAFFLALAPNKERAQPHFVRRVMRYAIPGGVIAGVATFATYLLARHHYEGAGAREAETSAATLALFLIAMWVLAIIARPYTWWRIGLIGAMGLGFLLVLTVPWLQDFFQLKLVGTTMPWAAVAIAAVASLAIEVIYRWVDRRVPA
>CP029617.1|AZM53928.1|3647211_3647469_+|DUF2530-domain-containing-protein
MAKWTPKHEAPEPLEGPVVATITGGTILWFVLFLVQLPFYGWFDDRDLTWWVWTCLAGAGLGLIGIWYVRVRDAAIKRSKVTQPE
>CP029617.1|AZM53927.1|3645540_3646989_-|MFS-transporter
MSPSASAPVDASKEPPKPPQGGLDGYFKISERGSTLVREVRGGFATFFAMAYIIVLNPIILGSAKDMYGHQLDNKQLVTATVLTAAFTTLLMGVIGNVPIALAAGLGVNTVVALQLAPRMSWPDAMGMVVLAGFVVMLLVATGLRERVMSAVPLGLRKGIAIGIGLFIMLIGLVDSGFVSRMPDAAHTTVPLQLGGDGHLNGWPVLVFALGVLLTLALMVRKVPGAILISIVVMTLVAMIINSVATVPSWGLTTPEWPGNPVSTPDFGLVGEISLFGGFEKVGILTGVLFVFTVLLSCFFDAMGTIMGIGDEAELTDANGNMPGINKVLFVDGIAVAAGGASSSSATTCFVESTAGVGEGARTGLANVVTGGLFAVALFLTPLATMVPSQAATPALLAVGFLILSGSIRQIDWSDYTIAIPAFVTMLMMPFTYSITNGIGMGFITFTVLRLAAGRGRDVPAAMYAVSAVFAFYYLMPALELT
>CP029617.1|AZM53926.1|3645258_3645441_+|ribbon-helix-helix-protein,-CopG-family
MGSTVLSLRIDGELHDRLRAHAAKRGMSVQDYVVRTLIRDDFDERFARSVEETEKLYGAA
>CP029617.1|AZM53925.1|3644677_3645115_-|MarR-family-transcriptional-regulator
MPDLSHGDDAVAVNALRSAVMRLSRRLKHQRVDESLSPTEMSVLGTLARCGHATPGELARKEHVQPPSMTRIVALLEAKGLVRLEPHPEDRRQKVVTQTETAEAMLEESRRKRNAWLAGLVEHLDEDEWARLRAAAPVLEKLAHL
>CP029617.1|AZM53924.1|3643171_3644446_-|MFS-transporter
MFSSLRIRNYRLFATGAVVSNTGTWMARITQDWLVLSLTGSSAAVGITTAMQFLPMLLFGLYGGVIADRFAKRNLLFCTQGAMSVSGLFLAALTLSGHVQVWHVYVAAFFTGLVTVVDNPTRQSFVSEMVGPDQVRNAVSLNSANFQSARLIGPAVASGLTAAVGPGWAFLANGLSFLAPLTGLLLMRTDELHATPRKPRGKGQLREGLNYVSKHPELIWPIVLVGFVGTFGFNFPIWLSAFADDVFHGGVGMYGLFNTLMALGSLAGALLAARRGTSRLRLLAGAALAFSVLQIAAAFAPELWMFVALIVPIGILGLTVNVTANSSVQMATDPEMRGRVMSLFMMVFTGGTPLGGPLFGWLADAYGVRISMAVGGLVCALAAVGVGLMLARAANLRLKVDLRRGRQHVRFVPRERERELATVA
>CP029617.1|AZM53923.1|3642541_3643132_-|RNA-2',3'-cyclic-phosphodiesterase
MRLFAAVLPPDAVVAELAAAASGLRALPGAEALRWAPRDSWHFTLAFMAEVPQETVPDLTTRLARAAHRTPPFALALRGGGRFGDRVLWAGVTGEVAALRLLAQRAEAAARKAGLAREEDRPYRPHLTLARGSGGTDLRPYADALASFAGTSWTVDELTLVRSELPRSGVPGERPRYETVGRWPLGGGDREREAGG
>CP029617.1|AZM57717.1|3656790_3658254_+|MFS-transporter
MGRALHLPFTGTARGIRKATHAHGAGESGLGKLIELHAVNGAGDVMVTVALASTVFFSVPTDEARGRVALYLAITMAPFTLLAPVIGPLLDRLPHGRRAAMAGAMLARALLALVLSGAVATGSVELYPAALGVLVASKAYGVVRSAVVPRLLPPGFSLVKANSRVTLGGLLATAVAAPIGAGLQALGPRWPLYGAFVIFVSGMFLSFSLPRKVDSAKGERKALLAADEDHLHLQHLHRHTRAAEPATTGSTSRTTSPTTPDPADPPGLTDPADAPNTPDAPDTAPKRRPGLRTVGPAVTHALAANATLRCLSGFLIFFLAFLLREHPLGGQSAAVSLGIVGVAAGTGNALGTAVGAWLKSRAPEVIIVTVVAVVLCVAIASAVFFGAVGVACLGACAGFAQALSKLSLDALIQRDVPEQVRTSAFARSETLLQVAWVVGGAVGISLPLNGSLGLTVAAGILALGWLSTVRGLLAAARQGGPRRTRVV
>CP029617.1|AZM53933.1|3658359_3658869_+|DUF2771-domain-containing-protein
MTSLLRGGAANVNSAARRRRTAAAIGAVSAGLLVLSACDKPTPLATVTVGSDSVHTEASCYNDGKELKQSQLKSCLQDKDVKTVKIDPDEKVRFGVDPEVAEKGWTLLMNGQPLTEASKKTYVVIPGSVFFNQQYGGGGDKTTVSLLEGGKGGTQKATGLWSFKFKKDS
>CP029617.1|AZM57718.1|3658912_3659590_+|futalosine-hydrolase
MPHPRVLVATAVPAERDAVARALRPAHDVDALPVGVGPAAAAAGTATALARAAATGRPYGLVVSAGIGGGFLPDAPVGSLVVADEITVADLGAETPDGFAPVTELGFGAVTHRPPRSLVREIADACGAATGTVLTVSTVTGSAERAAELRRRHPRALAEAMEGFGVAEAAALHGLPVLEIRAVSNPVGPRDRAAWRIGDALAALSDAFGKFTPVLKGWHTYDRND
>CP029617.1|AZM57719.1|3659603_3660464_+|1,4-dihydroxy-6-naphthoate-synthase
MAYSPCPNDTFVFDAWAHGRVPGAPALDVTFADIDITNGVAERAASSTALASDLDLDVLKVSYAVLPYVLDEYALLPCGGALGRGCGPLVLTREPGVDLKGRTVAVPSEKSTAYLLFRLWAADTLGGDGVGEIVVLPFDQIMPAVRDGRVDAGLVIHEARFTYQNYGLHRLADMGEHWESTTGLPIPLGAIIAKRSLGPAVLEQLAAAARASVRMAWDDPEASRAYVLEHAQEMDPAVADQHIGLYVNEFTADLGEDGYAAVRGLLTRAAAEGLVPALAPGALAFP
>CP029617.1|AZM53934.1|3660547_3660931_-|cold-shock-protein
MPTGKVKWFNSEKGFGFLSRDDGGDVFVHSSVLPAGVDTLKPGQRVEFGVVAGQRGDQALSVTLLDPTPSVAAAQRRKPDELASIVQDLTTLLENITPMLEKGRYPDKASGAKIAGLLRAVADQLDV
>CP029617.1|AZM53935.1|3661131_3661383_+|hypothetical-protein
MRDKTQANSAGPGDGMVRIGAIVFFVGAVATLVTVAPLFLGTDPFPPAAYAVCMLMGVGFLVAAAGVLRGIAVQRRQARSAAG
>CP029617.1|AZM53936.1|3661379_3662015_-|haloacid-dehalogenase
MGPMTSRALTVGFDLDMTLIDSRPGIRATYQALSAETGTYIDADLAITRIGPPLEQELRHWFPAEEIEERADRYREIYPTYALAPTLAMPGAREAVAAVRAHGGRAIVVTAKHEPNAKLHLSHLGIEADAVIGWLWAEAKAEALREYEAAVYVGDHTGDVRGARTAGALSVAVATGPCDAAELRAAGADVVLGELTEFASWLDAYVAGEGL
>CP029617.1|AZM57720.1|3662159_3663128_+|iron-ABC-transporter-permease
MTAAVVALLLAVLLSLAVGARAIAPSAVLDALLHGGHSDSAEVVREMRVPRTVIGLMVGAALALAGTVLQGITRNPIADPGILGISQGASVGVVTAIAFAGVHTLTGYVWYAFVGAALASVAVYAIAASGRGGATPVKLALGGAAINALLVSVTTAILTTKASALDEFRFWQVGSIAGRDSEVVGQIWPFLLVGVVLVLAVARGLDALALGEDVAKGLGQNVAAVRIVGGLGATVLTGAGVAAAGPIAFIGLAVPHIARAVVGSDHRWVLPMAALLGPVMLLVSDAVGRIVFPPSEVPAGVMTALIGVPFLVALVRRKVVAA
>CP029617.1|AZM53937.1|3663124_3664201_+|iron-ABC-transporter
MSSVSLAPRRIRPAGYAVVRVGRAAFLLHRRSTLVAVGLALLLAATCLAYLCVGESFVQPVEALKVVFGQPSADELVVGTLREPRMVVGLLVGAAFGVAGGLIQTVARNPLASPDIIGISHGASALTVGAMTFGVTSYAVLPYLSVVGGIAAAALVYVFAWRGGLHATRFVLIGIGFAIALRSVTTLFMTKGDYLVAQQAQIWMTGSLNGRGWAEADPLALTLLVLLPFMCWAARAQRSVTLDDDTATALGVRLGHVRLGLVLLGVVLASVATSAAGPVDFVALLAPQIARRMTRTAQIPLLCSALTGALIVVLADLFARRLFSPTELPVGVLTAAVGAPYLIWLIVRSRSVRNGGTS
>CP029617.1|AZM53938.1|3664197_3665106_+|cobalamin/Fe(3+)-siderophore-ABC-transporter-ATP-binding-protein
MTAARLSARELTLAYEDRTVVDRLDLAIPDGKVTVIVGPNACGKSTTLRALGRLLKPRSGAVLLDGEALAKLPTKKIAQRIGLLPQTPVAPEAITVADLVARGRQPHQHWWQQWSEADETAVTEAMERTDVAALAERSVDELSGGQRQRVWIAMALAQDTDLLLLDEPTTYLDISHQVEVLDLVRQLNHDRGRTVVVVLHDLNQAARYADHLVAMKSGEVVAEGAPSKVVTEELVREVFGLECVVVPDPVTGSPLVVPGAPWSATAPPADSGSTSTGSSSGTSTSRSNGRSNGHTGTRSTSA

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Crispr_ID: CP029617_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029617_12

4247429-4247544

Orphan

Consensus_repeat	Method
CCGTTTGCCCGGCATCGCATGGCTGGAGTACCGGGGCCGGGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029617_12

>merge|CP029617|12|4247429-4247544|CRISPRCasFinder
CCGTTTGCCCGGCATCGCATGGCTGGAGTACCGGGGCCGGGCCCTGGCGGGCTTTCCCACCCACCCACCCATCCGTTTGCCCGGCATCGCATGGCTGGGGTACCGGGGCCGGGCCC

>CP029617|12|12|4247429-4247544|CRISPRCasFinder
CCGTTTGCCCGGCATCGCATGGCTGGAGTACCGGGGCCGGGCCC	TGGCGGGCTTTCCCACCCACCCACCCAT
CCGTTTGCCCGGCATCGCATGGCTGGGGTACCGGGGCCGGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP029617.1\|AZM54415.1\|4238990_4241207_-\|phosphatase	unknown	unknown	gnl\|CDD\|369272
CP029617.1\|AZM57772.1\|4258822_4259836_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377028
CP029617.1\|AZM54420.1\|4245670_4246285_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP029617.1\|AZM54419.1\|4244687_4245554_-\|6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|224995
CP029617.1\|AZM54413.1\|4235437_4236685_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176509
CP029617.1\|AZM57771.1\|4237889_4238924_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
CP029617.1\|AZM54424.1\|4251434_4253549_+\|phosphatase	unknown	unknown	gnl\|CDD\|253386
CP029617.1\|AZM54429.1\|4260098_4260728_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
CP029617.1\|AZM54430.1\|4262763_4263612_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|366444
CP029617.1\|AZM54418.1\|4243625_4244327_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367243
CP029617.1\|AZM54416.1\|4241384_4243148_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
CP029617.1\|AZM54421.1\|4246214_4247093_-\|endonuclease	unknown	unknown	gnl\|CDD\|377028
CP029617.1\|AZM54427.1\|4255998_4256673_+\|snapalysin	unknown	unknown	gnl\|CDD\|280248
CP029617.1\|AZM54425.1\|4253610_4254618_-\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM54428.1\|4256767_4258759_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|130728
CP029617.1\|AZM54414.1\|4236850_4237807_+\|pirin	unknown	unknown	gnl\|CDD\|224655
CP029617.1\|AZM54417.1\|4243297_4243477_-\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM54423.1\|4249691_4251122_-\|Toxic-cation-resistance-protein	unknown	unknown	gnl\|CDD\|378410
CP029617.1\|AZM54422.1\|4247941_4249576_-\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237012
CP029617.1\|AZM54426.1\|4254802_4255777_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656

Protein	Function_ID	Function_description	E-value
CP029617.1\|AZM54415.1\|4238990_4241207_-\|phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	2.04019e-45
CP029617.1\|AZM57772.1\|4258822_4259836_-\|hypothetical-protein	gnl\|CDD\|377028	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12, and Nocturnin.	7.31397e-19
CP029617.1\|AZM54420.1\|4245670_4246285_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.36484e-10
CP029617.1\|AZM54419.1\|4244687_4245554_-\|6-phosphogluconate-dehydrogenase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	5.9067e-33
CP029617.1\|AZM54413.1\|4235437_4236685_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176509	cd08566, GDPD_AtGDE_like, Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.	7.45443e-65
CP029617.1\|AZM57771.1\|4237889_4238924_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	8.31539e-41
CP029617.1\|AZM54424.1\|4251434_4253549_+\|phosphatase	gnl\|CDD\|253386	pfam05787, DUF839, Bacterial protein of unknown function (DUF839). This family consists of several bacterial proteins of unknown function that contain a predicted beta-propeller repeats.	0
CP029617.1\|AZM54429.1\|4260098_4260728_-\|SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.46627e-19
CP029617.1\|AZM54430.1\|4262763_4263612_-\|ABC-transporter	gnl\|CDD\|366444	pfam01061, ABC2_membrane, ABC-2 type transporter.	1.69497e-23
CP029617.1\|AZM54418.1\|4243625_4244327_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|367243	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain.	4.1468e-13
CP029617.1\|AZM54416.1\|4241384_4243148_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
CP029617.1\|AZM54421.1\|4246214_4247093_-\|endonuclease	gnl\|CDD\|377028	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12, and Nocturnin.	1.92188e-16
CP029617.1\|AZM54427.1\|4255998_4256673_+\|snapalysin	gnl\|CDD\|280248	pfam02031, Peptidase_M7, Streptomyces extracellular neutral proteinase (M7) family.	5.12557e-72
CP029617.1\|AZM54428.1\|4256767_4258759_-\|hypothetical-protein	gnl\|CDD\|130728	TIGR01667, Uncharacterized_protein_HI_1680, integral membrane protein, YccS/YhfK family. This model represents two clades of putative transmembrane proteins including the E. coli YccS and YhfK proteins. The YccS hypothetical equivalog (TIGR01666) is found in beta and gamma proteobacteria, while the smaller YhfK group is only found in E. coli, Salmonella and Yersinia. TMHMM on the 19 hits to this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane.	2.12865e-33
CP029617.1\|AZM54414.1\|4236850_4237807_+\|pirin	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	2.8206e-64
CP029617.1\|AZM54423.1\|4249691_4251122_-\|Toxic-cation-resistance-protein	gnl\|CDD\|378410	pfam10138, vWA-TerF-like, vWA found in TerF C-terminus. vWA domain fused to TerD domain typified by the TerF protein. Some times found as solos.	1.67118e-52
CP029617.1\|AZM54422.1\|4247941_4249576_-\|methionine--tRNA-ligase	gnl\|CDD\|237012	PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.	0
CP029617.1\|AZM54426.1\|4254802_4255777_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.02992e-24

>CP029617.1|AZM54421.1|4246214_4247093_-|endonuclease
MTVACTALLGPSTPTDGALFARPLPPQAAEAVVPGRVMTWNICNPCDESNVGRAAEIATYAPQIIGLQEACVRDVEKIRDYLKHLYGLDYHVEYGTVLRNRGRCGGWPWRPGAFGQAILSATPMTDRTHVEYPDGGSEDRGYLAVTTTVGGRPTRVFNTHLAQRRQEAVRAEQTRVLATAVTPYERAIVLGDFNAVPETPELTRMWSLATDADPHCQPPPPEATPGTCETTTDWHAKFDYIFLRDLAPLRHAVHPTPYSDHHLVHTDLAPTRTSRRAAPTAAQPPAGAPRSG
>CP029617.1|AZM54420.1|4245670_4246285_+|TetR/AcrR-family-transcriptional-regulator
MTHSSAAKSANPSTRDRIVVVAARLIQRQGYVGTGIKQIAKEADATLGSVYHFFPGGKEAVAVAALAYSAEEFAEMLREGLEGAGAGAGDGGPGAAIERCAGELAVALRESGWIDGCPVTAAALETLGTDSEIQRVCAEALRGWERIVEERLAAAGLAPGDARELATTVISTLEGAEVTAQVSRSEEPLRAAGRQLARLVGTYV
>CP029617.1|AZM54419.1|4244687_4245554_-|6-phosphogluconate-dehydrogenase
MSRTITVIGLGPMGQAMAAAYLNRGYRVTLWNRTPSRADALVKRGATLAASPEEALAASDLTILSLTDLDAMYAILEPAEAALAGRTLVNLSSDTPEKARAGARWVTERGGTHLTGGVLCPPPLIGTADASTFYSGPREAYETHREALEVLTGRTDYRGEDPGLAALMYQLNMAVFWPSMIAYWQAVALADAHGLTATDIAPYVTENFAGMGHFVDFYASRIDAGNHEGDVDRAAMGLASMDHVVHTASDAGVDTAFPEAIQHVFHRVVEAGHGADSFSWAVELMKKR
>CP029617.1|AZM54418.1|4243625_4244327_-|TetR-family-transcriptional-regulator
MPAEQKSEIASVWTRPRRQREQLSREQIVAEAVRLLDADGIEALSMRKLGTRLDAGATSLYRHVANKDELIELVVDEVYGELEVPAATGPADWRDAAARSAYSLRAMILRHPWVASVLGQVGLIHLGPNVTRMSERMAAVYGAAGFPADETERALSTVISYVIGMATSEAAYLSLIARSGKNEQEFAADLPVPQQGPGQRDPRAEDPAKTREETFDYGLQRVLDGLGVRLTAG
>CP029617.1|AZM54417.1|4243297_4243477_-|hypothetical-protein
MATTPSPDRRRTADEVNEEIRALWLSAGGRLRPDERRVYEQLVTEWAEAEANSTPTHAA
>CP029617.1|AZM54416.1|4241384_4243148_+|aspartate--tRNA-ligase
MHRYRSHTCGELRASDVGTDVRLSGWLHNRRDLGGILFIDLRDHYGITQLVARPGTPAAETLDKLSKETVVRVDGKVVSRGAENVNPELPTGEIEIEAAEVEVLGAAGPLPFTINAEDGVNEERRLEYRFLDLRRERMHRNIMLRSAVIASIRSKMVALGFNEMATPILTATSPEGARDFVVPSRLNPGKFYALPQAPQQFKQLLMISGFDRYFQIAPCFRDEDARADRSPGEFYQLDVEMSFVEQEDVFQPIEKLMTELFTEFGGGREVTSPFPRIPFRESMLKYGNDKPDLRAKLELHDITDIFEGSDFKAFAGKHVRALPVPDTASQSRKFFDGLGDYAVEHGAKGLAWVRVAEDGSLTGPIAKFLTEANVAELTKRLGLEAGHAVFFGAGEFDEVSKIMSAVRVEAAKRAGHFEEGVFRFCWIVDFPMYEKDEETGKIDFSHNPFSMPQGGMKDLEEKDPLSILAWQYDIVCNGIELSSGAIRNHEPEVMLKAFEIAGYDAETVEHEFAGMLRAFRLGAPPHGGIAPGVDRIVMLLADEPNIRETIAFPLNGNAQDLMMGAPTELDESRLRELNISLRKPAAQ
>CP029617.1|AZM54415.1|4238990_4241207_-|phosphatase
MRTDDPPSQVGNDPLSQVGDESLPPLRDVLAAIATGLWRWDNASGTVTLDAEAARLLGLPARAQTLTEAAVRSRFHPVDWNEIYGTVQLAVAEGTLAEARLRIMDDTGRRVLRTVRSRSKPVLHDATEAYELIGTLQEVTEPAPGTAARTPVTGDWRRSREAFLLDAGRALAEARSTEEVLRVAAGLSMPGFSPDGLAVFGVAGDRLSIIGHHGHQPGDDGPFSAMPLDTDYPAAEVVRTGRAVYLSSPEDYRRRYPAAWPLARRFERQSWAFLPLTVAGRTMGAWMAAFAYPVSFTPDERSVLTTVARMLAQALSRAGVAESERELTEGLQRSMLPMLGPQIPGMSVAARYVPTGGGLQVGGDWYDMIPLPNGRIAFVIGDVQGHDVRAAGLMGQLRIALRAYASEGHRPDAVLSRATRFLSGITESITYGSSGSGADESAVYDPRFATCLYVEADPATGVLELARAGHPEPAIRMTDGTVLLRPTAGGLPLGVDPDADYPTTRLVLEPGETMLICTDGLIETGGHDLDSGWARIRSTLEGYLGEDEEDGLELLADRLVQAVHGPTSHYTTGPLADRREDDIAVLLLSRTSRPEQRTDARRTVLTVAQAEPERVAGARRHLRDLLHDWADDDQVDSAVLMVSEMLTNVLVHTDGDALLVAEVTGEPGARRLRAEVADGSDDLPHKRRPGELASSGRGLVLMELLAGAWGVDPRGDGKSIWFELYEDAGVSGGSAEGL
>CP029617.1|AZM57771.1|4237889_4238924_+|AI-2E-family-transporter
MTLLPEPARRLASWCVVVLLVVGVAAVGVWLCVTFQTAVTPVLLALLGTALLGPLYRRLLKMRVQRSLAAGLTCAAVVAVVGGVAYIVAKALIDTGDQIIASLRTAATDLAKYFGAAGTSLDDMASNAKDLLGKFGGTAASGVLSGLSVVGEIIAMAVLALLLVFFFLRDSGKAMASLRSLAPGDSADVVEAMARRAFVAVEGFMRGTTIIAFIDALCITVGLLVLRVPGAVGLGALVFVGAYIPYLGAFLSGAIAVLVALADRGFVIALWALGVVLAVQVLEGHILQPVIQSRTVQMHPAVVMLTITAGASVAGILGMLLAVPLTAAAFGVLSELRSRYSATP
>CP029617.1|AZM54414.1|4236850_4237807_+|pirin
MPAVTVENPLTLPRVVAPADAVARPVLAVTTAPRGFEGEGFPVRRAFAGINYKYLDPFIMMDQMGEVEWEAGEPKGTPWHPHRGFETVTYLIDGTFVHQDSNGGGGTIRNGDTQWMTAGSGLLHIEAPPEELVMSGGLFHGLQLWVNLPAKDKMMDPRYQDIRGGQVQLLASPDGGALLRVIAGELDGHEGPGITHTPITMIHATVRPGAEVTLPWRAEFNGLAYVLAGRGTVGAERRPAHQGQTAVFGAGSSLTVRADERQDAHAPDLEVVLLGGQPIREPMAHYGPFVMNSQAELRQAFEDFQKGLLGTVPAVHGM
>CP029617.1|AZM54413.1|4235437_4236685_+|glycerophosphodiester-phosphodiesterase
MTAAHRGQWRKAPENSLAAIRAGFADGAEIVEVDVRLTKDKVPVLMHDATVDRTTNGTGRVADLTHAQLRGLHLRAGLGGRQAAVTGERIPTLAEAMRASRTLGLVNLDQAWKDREAVWRVLEETGTVRNGLFKSKAPVPEVREFLDRHRGALYMHLVDDANAESVAEFGKERPPAVEVVFDDVRDRVAQPAFLQGLRATGRVWFNTMRNDYAARFTDEASLIAPARGWGALIAGYGATILQTDNVETLKSYLTKGVADPVPPGAVRVQAENYAPGGAGVAYHDTDPGNRGDGPGRRGDHVDVCDHDGAVVVCWMRGAEWITYGVDVPQDGHYTLKARVSSPYAPAGTYRIAYDGGRPGKAVQVANTTAHYAFALQDSRDPRQLTRGRHTVRVSLDAGVFQNWNLDYLQLEPVRP
>CP029617.1|AZM54422.1|4247941_4249576_-|methionine--tRNA-ligase
MAATGSEKQGADENAKAFYVSTPIYYVNDAPHLGHAYTTVAGDVLTRWHRQRGEKVWYLTGTDEHGQKIMRTAEANDVTPQEWCDKLVTEAWKPLWEHLNIANDDFIRTTEKRHTDRVREFVQDLYDKGEIYKGGYEGPYCVGCEEYKLPGDLIDGAADGEFAGQKLCPIHKKPVELLKEENYFFKLSEYGDKLLALYEANPGFIQPESARNEVVNFVRQGLQDLSISRSTFDWGVKVPWDDKHVIYVWIDALLNYATAVGYGANQEKFDATFPADVHLVGKDILRFHAVIWPAMLMAQGLPLPGRIAANGWLMVGGEKMSKSNLTGIKPQDLTSHFGVDAYRWYFLRAIAFGQDGSFSWEDFSARYTSELANDYGNLASRVAAMVGKYFGGELPAATASGDAEKAVEDGLAKAVVDADRAIGDELDFQSGILSIFAFVKQVNGYITEQEPWKVAKDESEEGRARLATILYTAADSLRAVAVLLNPVMPETSQKLWDSLGAEATLGALADQRVADAGAWGRLPVGSTVTKGAVLFPRLEEKPQS
>CP029617.1|AZM54423.1|4249691_4251122_-|Toxic-cation-resistance-protein
MGILDRLRNAFGRSRKGSVPEAREPERAAAPEAEGESSAPEAVSLPSPSPEPTPPSKASLPSPSREPSPPPSSSSSSSSSAVDDLVAAAFDNVSVPVPAARDRESEPEPAAEAEAERPAESAPEPVAEPEVEPKAEAAEPAVADTPGETSASPEADDVVPTRPALRDACPQQEHPPTTTEPTDNEADEAEAASAVGNRPAGRDGWAQPEGAGDVEATASTTPSAEPESAEKPEVPAAEPEAPAREAEKAAAPEGAGKKAAVSGAKLRAKAPALATPYKAAATALKKNDLTGTRAQVYLVLDRSGSMRPYYKDGSAQSLAEQVLALAAHVDPEATVHVVFFSTDIDATGTLTLPEHEGRVDELHAAAGHMGRTSYHRAIEEVVAHYEKSGHAGEPALVVFQTDGAPDTKGPATQALEEAAAHPLFFQFVAFGEHDAKAFDYLRKLKAENAGFFHAGPAPRELTDKELYEGLLASWRP
>CP029617.1|AZM54424.1|4251434_4253549_+|phosphatase
MPKLLPIITSHQGSGGRSALTCRFRCGDACFNEVPNTSDNEYVGDVIAGALSRRSMMRAAAVVTVATAAGSAVIAGPGASEAAAATPGHRPQAGHTGGKSKGARGLRFAPVAPNTTDAVTIPTGYEQNVVIRWGAPILRGAPAFDPDKQTAKAQAGQFGYNNDFLSLLPLRGEHGEHGRQLLVANHEYTDEVLMFKGYDPQNPTREQVEIAWAAHGLSVVVVEGERKSGALRAVSRHHLNRRLTATSRFRLTGPVAGSPLVRTKADPRGTTVLGTLNNCAGGTTPWGTTLHGEENFNQYFANAAKVTDPTAAARLKRYGVSGEASERKWERFDDRFDLAKEPNEANRFGWVVELDPYDPDSTPRKRTALGRFKHEAAQPRLTHDGRPVVYMGDDEKFDYFYKFVSSKRVAKGKSRAAHEHNLTLLDEGTLYVAKLTGDSPASEIDGKGTLPEDGEFDGSGTWIPLATAGPGGKAVSHVEGMTAAEVYVFTRLAGDKVGATKMDRPEDIEPSPHTGKVYVALTNNSDRGKAGKAGADEANPRNLNKHGQILELTERRNRAEATTFAWSLFLVAGDPNDPSTYFAGFPKDRVSPISCPDNVTFDPHGNLWISTDGNQLGSHDGLFGVATRGERRGELKQFLTMPKGAETCGPLVQDRRVVVAVQHPGEVDGASAEKPASAWPDGPGKIVRPSVVSVWRADGRDIGV
>CP029617.1|AZM54425.1|4253610_4254618_-|hypothetical-protein
MRATRRTFRTAAIATGAIAALAVPATAAFASDAPSPSQGQVTTDDQRQDHGTKDQTKPDDTKTDENTKTDDGTKPDDNKKNEEKKDEKDGEKKDDADKDTGTTPKPGSWESKGTTALGNGWSAKVQVNASARTAKATLTLNGAVKGSLTAYEKAARTTVDGNTFTLTPDGTISMKGKPVPPKPVNDKRVHKATVKLADGSLAKIYKLGPHHYQADIFAHGSRLDTLDANGKAAYGQNNGLHVVLNPDGTIKSWVEGKNHHHNGTKPQPHGKPQPVKPQPRNGSHQVVPKGGVKAGAEGVTAGSSEDAPLIAAGSGMAALGAGGLGFALYRRKQNG
>CP029617.1|AZM54426.1|4254802_4255777_-|LysR-family-transcriptional-regulator
MELEVRHLRALCAIADTGSLHKAARQLGMSQPSLTTQLRRIENALGGRLFDRERTGCRPTPLGRVVLSRARPLVTEMRALVAETKAAAARASDGPRLRIGSTASRAIPGWLRRLRVRLPGTEISLQMDVSANALLRMVAAAQLDVVFVHEVEGSPLRLPESLRRRVLLDREPQFVCLAADHPAVARPVVRLGDLADDRWMVDPTVDGEWDGLRRILTAAGLNPPVLHGDYLTGASLVATGEVVTLCQPTSRGRADMAVRPLFGDPLGVRLLVAARTEDELNAVYGELEAAYWEAARQSSAYTEWLLRAGDPRGASGGTLVPATR
>CP029617.1|AZM54427.1|4255998_4256673_+|snapalysin
MSKRYLSVAAVLGLTVAGLGVTSTAASAAPLAPTPSAPAASGSYASYAAYEGSAREAKANKAFFEAVVKAVAEKRAANPGAKSVTVVYDASGAPTFARQIAGSTSIWNAAVSNVKLQQGTSGASFSYREGNDPRGSYASTDGHGKGYIFLDYAQNKEYDSTRVTTHETGHVLGLPDTYDGPCSQLMSGGGPGPSCTNAQPDAAERAKVEQLWANGLAKALHKVR
>CP029617.1|AZM54428.1|4256767_4258759_-|hypothetical-protein
MPRETPTAPPVPRGPRHPLTPPDWLVRSLKPQSAPIPWAAVARASLAMALPLAVGILAGQPTYGALASMGALSGVIGDTADAYRMRVLNIAVPQLFGAIGVTLGSLAFGHGWVTVGAVTFVALVSGMMSTIGAVASVGGLLLLLNCVVGAGLPMPGQWWLAPALMTGGGLLVLALGLLAWPLRSGIPERTAVAASYRAVAALLDAAGTDAYDDARAAVTTSLNQSYDLVLARRARDHGRNPDLVRLVAQLNALTPIIEAAPATHLSARHARVRLPSEVPAAVRALAQAVERGGQGAASVPAPGDEPGDHAARALDHAVRHATETLNDADPLGVIETEDRLGRPAALRVRARRAARNVVLSGTSWRYGLRLALCIGIAQALVSLIDVPRSYWVALTVTFVLKPDFGSVFSRAVLRALGTAAGLVVAAAVLAEVPHGWWDVPVMMLLAPLIPALTTRGYGYQTAAITPVILLLSDILNHQGLGLVVPRLVDSLIGCAIALVAGYLLWPESWGTRIGDRLADAVADTAGYVECAFGATAGPAARARLRRRLYRDLSVIRSEFQRALTEPPPTGTRATAWWPLVVAVERILDATTAARVRIRHGAEPPAPEEVAEVARELRELAAGLRTSATLEEVRSEFTVGPKESVLEPLRQEVGAARAIATPQP
>CP029617.1|AZM57772.1|4258822_4259836_-|hypothetical-protein
MTADHDAETEAGAQGARGARRPRRGAAWSAGVLLLGTCAVIGFRVADSDGPTPVPQILAFLPWLLVPAVAGLLLAALARWRTGMVWGVATLGLLAWYMEPYGDTNDPSGEAVAELRVMTSNVEFGRGTAGLVRAVREERPDLLFVEECDHACAATLRKELPRADYPYREAVAAYGPEGSVILAKVPLKRAPRIAATLGMPAAVADVKGHPVRVQLAHPMPPMPRQVGLWREELGKLKEYAAAGEGRSTIIAGDFNATQDHAAFRAILDAGRLRDAARLDGSSRSPSWPTAVPSPLGAQIDHVLATPDFSARDARFLEIGDTDHRTLVVTLTLHRPER
>CP029617.1|AZM54429.1|4260098_4260728_-|SAM-dependent-methyltransferase
MANHQDETRAAYDGVVELYASLFADRLETQPFARAMISTFAELVRATGNPRAADVGCGPGHLTAMLHELGLDAFGLDLSPGMVDHARRAHPALHFQEARMETLPIEDGVLGGVLAHYSMIHTAPEELPGLLAEQVRVLAPGGLLLVSFFGTDGPEPVWFDHKVAPAYSWPADRLAELLADAGLVPFARLLHDPGSERGFLDAHLLARRS
>CP029617.1|AZM54430.1|4262763_4263612_-|ABC-transporter
MSATAPTETQDLAPVRTESLAELLISTERPPRPSALSACLTFGWRAMLKIKHVPEQLFDVTAFPIMMVLMYTYLFGGALAGSPQEYIQYLLPGILVMSVVMITMYTGVSVNTDIEKGVFDRFRTLPIWRPSTMVGYLLGDALRYAIASVVILTVGLIMGFRPDGGFLGVVAGIAVLLVFSFAFSWIWTMFGLLLRTEKSVMGVSMMVIFPLTFLSDIFVKPETMPGWLQAFVNNNPITHVSSAVRALMDGTSPTTELAWTLGWVVLLVGVFGPVTMRLYNRK

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Crispr_ID: CP029617_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029617_13

4879593-4879715

Orphan

Consensus_repeat	Method
GGTGCGGGGTAAACGGGTGGGTGGGTGGGGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029617_13

>merge|CP029617|13|4879593-4879715|CRISPRCasFinder
GGTGCGGGGTAAACGGGTGGGTGGGTGGGGAGCACTCGGTGAGGTGCGGCGGGGTGGGGCTTTGTGGGGACGGCGCCTTGGGTGCGTTGGTGGTGCGGGGTGAACGGGTGGGTGGGTGGGGAG

>CP029617|13|13|4879593-4879715|CRISPRCasFinder
GGTGCGGGGTAAACGGGTGGGTGGGTGGGGAG	CACTCGGTGAGGTGCGGCGGGGTGGGGCTTTGTGGGGACGGCGCCTTGGGTGCGTTGGT
GGTGCGGGGTGAACGGGTGGGTGGGTGGGGAG

Protein	Signature genes	Signature genes Name	Protein_function
CP029617.1\|AZM54924.1\|4874785_4875307_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
CP029617.1\|AZM54920.1\|4870369_4870870_+\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
CP029617.1\|AZM54937.1\|4887710_4887968_+\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM57834.1\|4877745_4878741_-\|type-I-pantothenate-kinase	unknown	unknown	gnl\|CDD\|235466
CP029617.1\|AZM54935.1\|4886072_4886603_+\|ribosomal-protein-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
CP029617.1\|AZM57833.1\|4871896_4872637_-\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM54928.1\|4879837_4881277_+\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	unknown	unknown	gnl\|CDD\|238576
CP029617.1\|AZM54927.1\|4878843_4879212_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234610
CP029617.1\|AZM54936.1\|4886595_4887714_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
CP029617.1\|AZM54925.1\|4875400_4876759_+\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237672
CP029617.1\|AZM54931.1\|4883872_4884385_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|376771
CP029617.1\|AZM54926.1\|4876755_4877703_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|129372
CP029617.1\|AZM54930.1\|4882647_4883862_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
CP029617.1\|AZM54921.1\|4871011_4871866_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
CP029617.1\|AZM54932.1\|4884578_4884791_+\|hypothetical-protein	unknown	unknown	unknown
CP029617.1\|AZM54923.1\|4874299_4874743_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
CP029617.1\|AZM54929.1\|4881453_4882614_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
CP029617.1\|AZM54934.1\|4885419_4886076_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
CP029617.1\|AZM54922.1\|4872849_4874055_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378217
CP029617.1\|AZM54933.1\|4884762_4885308_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP029617.1\|AZM54924.1\|4874785_4875307_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	8.5562e-73
CP029617.1\|AZM54920.1\|4870369_4870870_+\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	2.749e-64
CP029617.1\|AZM57834.1\|4877745_4878741_-\|type-I-pantothenate-kinase	gnl\|CDD\|235466	PRK05439, PRK05439, pantothenate kinase; Provisional.	0
CP029617.1\|AZM54935.1\|4886072_4886603_+\|ribosomal-protein-alanine-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	6.3079e-30
CP029617.1\|AZM54928.1\|4879837_4881277_+\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	7.95121e-68
CP029617.1\|AZM54929.1\|4881453_4882614_+\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	6.75164e-162
CP029617.1\|AZM54936.1\|4886595_4887714_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
CP029617.1\|AZM54925.1\|4875400_4876759_+\|phosphoglucosamine-mutase	gnl\|CDD\|237672	PRK14318, glmM, phosphoglucosamine mutase; Provisional.	0
CP029617.1\|AZM54931.1\|4883872_4884385_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	6.92284e-47
CP029617.1\|AZM54926.1\|4876755_4877703_-\|hypothetical-protein	gnl\|CDD\|129372	TIGR00271, Uncharacterized_protein_MJ0678, uncharacterized hydrophobic domain. This domain is in a family of archaeal proteins that includes AF0785 of Archaeoglobus fulgidus and in several eubacterial proteins, including the much longer protein sll1151 from Synechocystis PCC6803.	2.75721e-54
CP029617.1\|AZM54930.1\|4882647_4883862_+\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	4.47148e-24
CP029617.1\|AZM54921.1\|4871011_4871866_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	4.84217e-107
CP029617.1\|AZM54923.1\|4874299_4874743_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	1.25135e-99
CP029617.1\|AZM54927.1\|4878843_4879212_+\|holo-ACP-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	6.52985e-49
CP029617.1\|AZM54934.1\|4885419_4886076_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	4.37e-61
CP029617.1\|AZM54922.1\|4872849_4874055_+\|hypothetical-protein	gnl\|CDD\|378217	pfam09594, GT87, Glycosyltransferase family 87. The enzymes in this family are glycosyltransferases. PimE is involved in phosphatidylinositol mannoside (PIM) synthesis, a major class of glycolipids in all mycobacteria. PimE is a polyprenol-phosphate-mannose-dependent mannosyltransferase that transfers the fifth mannose of PIM. The family also includes alpha(1-->3) arabinofuranosyltransferase, invloved in the synthesis of of mycobacterial arabinogalactan.	4.43735e-11

>CP029617.1|AZM54927.1|4878843_4879212_+|holo-ACP-synthase
MIIGVGIDVAEIERFGAAMARTPGMAERLFVESELLLPSGERRGVASLAARFAAKEAVAKALGAPGGLRWTDAEVYVEDSGQPRVRVRGTVAERASLLGVRAWHVSLSHDAGVASAVVVAEG
>CP029617.1|AZM57834.1|4877745_4878741_-|type-I-pantothenate-kinase
MSSVSAPDKAQRSAHRHKPEATPYLDLTRAEWSALREKTPLPLTAEEVEKLRGLGDVIDLDEVRDIYLPLSRLLNLYVGATDGLRGALNTFLGEKGSQSGTPFVIGVAGSVAVGKSTVARLLQALLSRWPEHPRVELVTTDGFLLPTKELEARGLMSRKGFPESYDRRALTRFVADIKAGKAEVTAPVYSHLIYDIVPGKRLTVRRPDILIVEGLNVLQPALPGKDGRTRVGLADYFDFSVYVDARTEDIERWYLNRFKKLRGTAFQNPSSYFRKYTQVSEEEALDYARTTWRTINKLNLVENVAPTRGRATLVVRKGPDHKVQRLSLRKL
>CP029617.1|AZM54926.1|4876755_4877703_-|hypothetical-protein
MLHLRLISPADKTDDVLRLIEGTTGTTHLAVVPGAARNPTGDVIMCDVAREAGDELIEGLRALDLDKCGSIAVENIDLSLSERADKAEDEAPGEGSDAVLWEQLTEATHEESTLSITYIAFITLATMIAACGVVLDNAILIVGAMAVGPEFGPLAGFCTALVRRAPRLALRSLIALLVGFLVAMLVTVGFSYFMDATDLFSHEALKAERPNTNFIYRPDWFSFVVAVLAGAAGTLSLTSAKSGALVGVAISVTTVPAAANAAVAFSYNEYKQAWGSTEQLLLNLLGIVLAGTLTLLAQKALWAGQRERTAKSRSV
>CP029617.1|AZM54925.1|4875400_4876759_+|phosphoglucosamine-mutase
MGRLFGTDGVRGVANADLTAELALGLSVAAAHVLAEAGTFEGHRPVAVVGRDPRASGEFLEAAVVAGLASAGVDVLRVGVLPTPAVAHLTGALGADLGVMLSASHNAMPDNGIKFFARGGHKLADELEDRIEAVYEEHGTGAPWQRPTGAGVGRVKSYDQGLDQYIAHLLGVLPNRLDGLKIVLDEAHGAAARVSPEAFTRAGAEVITIGAQPDGLNINDGCGSTHLDLLKAAVVEHEADFGVAHDGDADRCLAVDHTGAEVDGDQILAVLALAMREHGTLRHDTVVATVMSNLGFKLAMEAQGLSLVQTAVGDRYVLESMKEHGFALGGEQSGHVIVLDHATTGDGTLTGLLLAARVAETGRTLADLASVMERLPQVLINVPDVDKARVKTSAELSAAVTEAERELGSTGRVLLRPSGTEPLVRVMVEAADIEQARSVAERLADVVKSALG
>CP029617.1|AZM54924.1|4874785_4875307_+|30S-ribosomal-protein-S9
MAETTVEQPVEETEVVDVEQYTTESEAPLEGEYTSESNAARFGDPQPAAGLGRRKNAIARVRIVPGTGKWKVNGRTLEDYFPNKVHQQEVNEPFKVLELDNRYDVIARISGGGVSGQAGALRLGVARALNEADVENNRGALKKAGYLKRDDRAVERKKAGLKKARKAPQYSKR
>CP029617.1|AZM54923.1|4874299_4874743_+|50S-ribosomal-protein-L13
MRTYSPKPGDVTRQWHVIDARDIVLGRLATTAATLLRGKHKPIYAPHVDTGDFVIIINAEKVHLSGNKKTQKMAYRHSGYPGGLRSVRYDELLEKSPEKAVEKAVKGMLPKNTLGRQMLSKLKVYAGDQHPHGAQQPVPFEITQVAQ
>CP029617.1|AZM54922.1|4872849_4874055_+|hypothetical-protein
MDTGKSAVSGWLSRPAGWHVRAVLGLVLVAGAVRVGLRTPDGGMDNAIVVRAAEAWIHGRSPYADRHFLYLPGAVLAAVPQALLPTAVTRYLVPAGVTAGLVVGWACALRLYDVDWRSRFAVYGLLGLALGFTPFGHLVQLGNWTVASAAALPLALLLVCRGRWVGAGLVIGAAVAVKPLLVPVVLLFVFAGRWRALGAAVAVPAVASLAAALVMPDPAGFFTRTLPFLLRGDDAFVRLYEASPSAVLARLGVPQSAATLLAGCAAAAGVWCAWRRWGRGDAGPSRVAECATMLMLSAFLVSRPSYDHYLLVVLPLLLAGALRAGAPARGPWFWVALVPQVPGFAWPWLEPMTRRAFKDAATLCLLAVTVGRACAAGALRGRYGVGRAGRYPEECRPVRGV
>CP029617.1|AZM57833.1|4871896_4872637_-|hypothetical-protein
MMIGGGALATIGIAAAVAITVVSANSDDASASNKPASELPATADIPGASDEPGPTFKPTTPPPPPDPKDFISSAKKDKAPLTPEGLFPGKTFTSGEDVYKKGATDSTKQCASVTQPALGAILTKNDCTRLIRASYVKGSLAVTIGVAVFDTSAEAAKVKKQVDKGLVNALPGKGVPGFCQTGVCRGTYNAYGRYAYFTTTGYPSGKNVTTSDRKAYAVGDTMARFAFQRINQRGQAQASAAAAAPE
>CP029617.1|AZM54921.1|4871011_4871866_+|tRNA-pseudouridine(38-40)-synthase-TruA
MSDEAEPGFVRVRLDLSYDGRDFSGWAKQRDGQRTVQGEIEAALRTVTRSRETYELTVAGRTDSGVHARGQVAHVDLPESVWEEHREKLLRRLAGRLSHDVRVWKVAEAPAGFNARFSAVWRRYAYRVTDHPGGVDPLLRGHVLWHDWELDLDAMNAAAERLIGEHDFAAYCKRREGATTIRTLQELRWERRADGILEATVRADAFCHNMVRSLVGAMLFVGDGHRPVEWPGKVLEAGVRDSAVHVVRPHGLTLEEVGYPADELLAARSKEARNKRTLPGAGCC
>CP029617.1|AZM54920.1|4870369_4870870_+|50S-ribosomal-protein-L17
MPKPAKGARLGGSAAHEKLLLANLAKQLFEYGRITTTEAKARRLRPYAERLVTKAKKGDLHNRRQVLSVITDKSIVHTLFTEIGPRYENRPGGYTRITKIGNRRGDNAPMAIIELVEALTVAQEATGEAEAATKRAVKEDSLKKDEAVEAKSDEATEAPAEESKDA
>CP029617.1|AZM54928.1|4879837_4881277_+|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase
MRSAYGVESVRAAEREVMARGPEGALMRRAAAGLAAECAQLLGKVYGARITLLVGSGDNGGDALYAGAGLARRGAGVTAVLLSPERTHAGGLAALRAAGGTVVGGDEDRAERAVARARLVVDGIVGIGGRGGLRERAAQLVAAVARDALVVAVDLPSGIDADTGEVHGEAVRADVTVTFGAYKPGLLIDPGREYAGAVRLVGIGLELPAGERVLEALQYVDVAGLLPQPGGESDKYRRGVVGVVAGSARYPGAAVLCVAGALRGGAGAVRYVGPAADAVIARFPEALVSAGPPSKAGRVQAWVVGPGLGDDEERLRDVVAAEVPVLIDADGLRLAGEREVRARRAPTLLTPHAGEAAALLGVAREEVESARLSAVRELAGRFGATVLLKGSTTLVASGEGAVRVNPTGTPWLATAGSGDVLSGLAGSLLAAGLGARDAGSVGAYLHGLAARHASDGAPVAAQDVADAIPAAWRDVRRPG
>CP029617.1|AZM54929.1|4881453_4882614_+|alanine-racemase
MNETAPFRVRAEIDLAALRANVRALRAHAPDAALMAVVKADAYGHGMVPCAKAAVQAGAGWIGTATPEEALALRAAGLPGRIMCWLWTPGGPWREGVEADLDMAVSALWALEEVTAAARAAGRTARVQLKADTGLGRNGCMPADWPELIAASLRAEAEGLIRVTGLWSHFACADEPGHPSIAAQLSVFREMVAFAEEQGIRPEVRHIANSPATLTVPEAHFDLVRPGIAMYGVSPSPEVGTPEDFGLRPVMTLSASLAHVKHAPAGHGVSYGHHYVTPGETTLGLVPAGYGDGVPRHASGTAPVLVDGKWRTVAGRVAMDQFVVDLGGDEPEVGTEAVLFGPGDRGEPTAEDWAQAAGTIAYEIVTRIGSRVPRVYVNERPGIGEM
>CP029617.1|AZM54930.1|4882647_4883862_+|alpha/beta-hydrolase
MSESSTGAAAAEAVTEAAAAAGNWRRAGVAGTALGVLAAGAAAGVAIERLTVGRGMRKKARLALDASGPYGSLRGMPGTAYADDGTELSYEVEEVETDGEQAARVRRGFGRRSSAPVTVVFSHGYCLSQDSWHFQRAALRGVVRAVYWDQRSHARSGRGVDQAERDVPVSIDQLGRDLKAVIDAAAPEGPLVLVGHSMGGMTTMALADQFPELIRDRVVAVALVGTSSGKLGQVNFGLPVAGMNAVRRVLPGVLRALGSQAELVERGRRATADLFAGVIKRYSFSRRDVDPAIARFAERMIEATPIDVVAEFYPAFAEHDKAAALGHFAGLPVLVLAGEKDLVTPSEHSEAIAAVLPDADLVLVPDAGHLVMLEHPEVVSDRLAELLARAGAGRAAADAGSSSG
>CP029617.1|AZM54931.1|4883872_4884385_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MEAPHHQAPANVLKITVNSPEQMGELGRRLAKLLRPGDLVMLTGELGAGKTTLTRGLGEGLGVRGAVTSPTFVIARVHPPLGQGPALVHVDAYRLGGGLDEMEDLDLDVSLPDSVVVVEWGEGKVEELSDDRLHVVIDRAVGDTTDEVREVTLTGLGGRWSDADLASLAA
>CP029617.1|AZM54932.1|4884578_4884791_+|hypothetical-protein
MPASERDVQPRPPHVLPGPVAVSRPAHPSMSELLASCAAATAVSTPPRDPAPRAPAPAGSTPTERRRPSC
>CP029617.1|AZM54933.1|4884762_4885308_-|hypothetical-protein
MSRSSSGFVAGLTAAAVAAIGFLAYQASAGVPDPAKPEQSPGASAPRSPRDRANPAVVPAESGAGERVVYSVSEDRVWLVEASGKPRITFQVTPGSVDPAPGTYAVTSRSGTVTGSDGVPIEHVVRFTTVDGITIGFSAAVDGSTPKPDPSKKTGGIRESRAHGNAMWEFATISKKVVVVP
>CP029617.1|AZM54934.1|4885419_4886076_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MLLLALDTATPAVTVALHDGSSVVAQSSQVDARRHGELLLPAVDRVLADAGLRLDAVTAVVAGVGPGPYTGLRVGLMTADTFGLALGVPVHGICTLDGLAYASGIESGPFVVATDARRKEVYWARYDDVRTRASEPAVDRPADIAAEVAGLPAVGAGALLYPDTFPDARAPEHVSAAALASLAAERLAAGEELPEPRPLYLRRPDAQVPKNYKVVTPK
>CP029617.1|AZM54935.1|4886072_4886603_+|ribosomal-protein-alanine-N-acetyltransferase
MTEATEVPAAAGLREMRWWDIDAVFALEKELFPDDAWSRGMFWSELAHSRGPLATRRYVVAMDGDRLVGYAGLAASGDLADVQTIAVARDHWGTGLGARLLTDLLQAATAFECPQVMLEVRVDNTRAQKLYERFGFEPIGFRRGYYQPGNVDALVMRRTDPSTPAPTGVQGTEIHG
>CP029617.1|AZM54936.1|4886595_4887714_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MADSRDEPLVLGIETSCDETGVGIVRGTTLLADAVASSVDEHARFGGVVPEVASRAHLEAMVPTIERALKEAGVSAKDLDGIAVTAGPGLAGALLVGVSAAKAYAYALGKPLYGVNHLASHICVDQLEHGPLPEPTMALLVSGGHSSLLLSADITSDVRPLGSTIDDAAGEAFDKIARVLNLGFPGGPVIDRYAREGDPNAIAFPRGLTGPRDPAYDFSFSGLKTSVARWIEAKRAAGEDVPVRDVSASFQEAVVDVLTRKAVRACKDEGVDHLMIGGGVAANSRLRALAQERCEKAGIRLRVPRPKLCTDNGAMVAALGAEMVARNRSASAWDLSADSSLPVTEPHVPGHAHTHAHDHDHVHEVSKGNLYS
>CP029617.1|AZM54937.1|4887710_4887968_+|hypothetical-protein
MSVALMWEARAVEGRGAELLAWAREQRFDVAPLRRETFRAPQDRVLVITWWDAAYDADLPELPEPAPELVTRAVHRWRFEPVDAD

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Crispr_ID: CP029617_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029617_16

7974536-7974632

Orphan

Consensus_repeat	Method
GTTCCCCGCGCCCCTGACGGGGCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029617_16

>merge|CP029617|16|7974536-7974632|CRISPRCasFinder
GTTCCCCGCGCCCCTGACGGGGCTTACCGCCGGTCGGTTGTTCGCTGCGGGTGCGTCGTGGCTGGTCGCGCCGTTCCTCGCGCCCCTGACGGGGCTT

>CP029617|16|16|7974536-7974632|CRISPRCasFinder
GTTCCCCGCGCCCCTGACGGGGCTT	ACCGCCGGTCGGTTGTTCGCTGCGGGTGCGTCGTGGCTGGTCGCGCC
GTTCCTCGCGCCCCTGACGGGGCTT

Protein	Signature genes	Signature genes Name	Protein_function
CP029617.1\|AZM57131.1\|7960791_7962357_+\|acyl-CoA-synthetase	unknown	unknown	gnl\|CDD\|236215
CP029617.1\|AZM57137.1\|7978050_7978293_+\|DUF397-domain-containing-protein	unknown	unknown	gnl\|CDD\|377231
CP029617.1\|AZM58123.1\|7976777_7977944_+\|thiolase-domain-containing-protein	unknown	unknown	gnl\|CDD\|181378
CP029617.1\|AZM58120.1\|7967972_7968818_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP029617.1\|AZM57142.1\|7982495_7984829_+\|alpha-L-fucosidase	unknown	unknown	gnl\|CDD\|379625
CP029617.1\|AZM57132.1\|7964988_7966491_+\|acyl-CoA-synthetase	unknown	unknown	gnl\|CDD\|181381
CP029617.1\|AZM57133.1\|7970147_7971704_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224089
CP029617.1\|AZM58119.1\|7966497_7967787_-\|phenylacetate--CoA-ligase	unknown	unknown	gnl\|CDD\|131210
CP029617.1\|AZM57135.1\|7973695_7974496_+\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|181122
CP029617.1\|AZM57130.1\|7959682_7960795_+\|monooxygenase	unknown	unknown	gnl\|CDD\|240081
CP029617.1\|AZM57140.1\|7980258_7980666_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133388
CP029617.1\|AZM58118.1\|7962410_7964816_-\|penicillin-amidase	unknown	unknown	gnl\|CDD\|376618
CP029617.1\|AZM57134.1\|7971796_7973473_-\|acyl-CoA-synthetase	unknown	unknown	gnl\|CDD\|236100
CP029617.1\|AZM58124.1\|7980734_7981442_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275380
CP029617.1\|AZM58121.1\|7968958_7969534_+\|chorismate-mutase	unknown	unknown	gnl\|CDD\|236441
CP029617.1\|AZM58122.1\|7975677_7976733_+\|lipid-transfer-protein	unknown	unknown	gnl\|CDD\|181173
CP029617.1\|AZM57138.1\|7978383_7979307_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366180
CP029617.1\|AZM57136.1\|7974690_7975653_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|224462
CP029617.1\|AZM57139.1\|7979323_7980208_-\|6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|224995
CP029617.1\|AZM57141.1\|7981834_7982335_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP029617.1\|AZM57131.1\|7960791_7962357_+\|acyl-CoA-synthetase	gnl\|CDD\|236215	PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.	0
CP029617.1\|AZM57137.1\|7978050_7978293_+\|DUF397-domain-containing-protein	gnl\|CDD\|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	1.79314e-11
CP029617.1\|AZM58123.1\|7976777_7977944_+\|thiolase-domain-containing-protein	gnl\|CDD\|181378	PRK08313, PRK08313, thiolase domain-containing protein.	0
CP029617.1\|AZM58120.1\|7967972_7968818_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	6.54138e-30
CP029617.1\|AZM57142.1\|7982495_7984829_+\|alpha-L-fucosidase	gnl\|CDD\|379625	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain. This domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain.	4.19734e-68
CP029617.1\|AZM57132.1\|7964988_7966491_+\|acyl-CoA-synthetase	gnl\|CDD\|181381	PRK08316, PRK08316, acyl-CoA synthetase; Validated.	0
CP029617.1\|AZM57133.1\|7970147_7971704_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	2.53711e-99
CP029617.1\|AZM58119.1\|7966497_7967787_-\|phenylacetate--CoA-ligase	gnl\|CDD\|131210	TIGR02155, Phenylacetate-coenzyme_A_ligase, phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. [Energy metabolism, Other].	0
CP029617.1\|AZM57135.1\|7973695_7974496_+\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|181122	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein.	2.66169e-152
CP029617.1\|AZM57130.1\|7959682_7960795_+\|monooxygenase	gnl\|CDD\|240081	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.	2.53855e-56
CP029617.1\|AZM57140.1\|7980258_7980666_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133388	cd01282, HTH_MerR-like_sg3, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	4.06296e-47
CP029617.1\|AZM58118.1\|7962410_7964816_-\|penicillin-amidase	gnl\|CDD\|376618	pfam01804, Penicil_amidase, Penicillin amidase. Penicillin amidase or penicillin acylase EC:3.5.1.11 catalyzes the hydrolysis of benzylpenicillin to phenylacetic acid and 6-aminopenicillanic acid (6-APA) a key intermediate in the the synthesis of penicillins. Also in the family is cephalosporin acylase and aculeacin A acylase which are involved in the synthesis of related peptide antibiotics.	4.19721e-131
CP029617.1\|AZM57134.1\|7971796_7973473_-\|acyl-CoA-synthetase	gnl\|CDD\|236100	PRK07798, PRK07798, acyl-CoA synthetase; Validated.	0
CP029617.1\|AZM58124.1\|7980734_7981442_-\|hypothetical-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	2.64793e-38
CP029617.1\|AZM58121.1\|7968958_7969534_+\|chorismate-mutase	gnl\|CDD\|236441	PRK09269, PRK09269, chorismate mutase; Provisional.	9.02989e-40
CP029617.1\|AZM58122.1\|7975677_7976733_+\|lipid-transfer-protein	gnl\|CDD\|181173	PRK07937, PRK07937, lipid-transfer protein; Provisional.	0
CP029617.1\|AZM57138.1\|7978383_7979307_+\|hypothetical-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	2.58263e-20
CP029617.1\|AZM57136.1\|7974690_7975653_+\|DNA-binding-protein	gnl\|CDD\|224462	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only].	3.63215e-23
CP029617.1\|AZM57139.1\|7979323_7980208_-\|6-phosphogluconate-dehydrogenase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	4.05758e-38

>CP029617.1|AZM57135.1|7973695_7974496_+|crotonase/enoyl-CoA-hydratase-family-protein
MGGTEHLSVRREGATLILTLNRPEAKNALSLSMLVGLYDGWVAADEDDAVRSIVLTGAGGAFCAGMDLKALAGKGMEGERYRDRMKADPDLHWKAMLRHHRPRKPVIAAVEGYCVAGGTEILQGTDIRVAGESATFGLFEVRRGLFPIGGSTVRLPRQIPRTHALEMLLTGRPYSAAEAAAIGLVGHVVPDGSALEKALVIAEQINGCGPLAVEAVKASVYETAEMSEAEGLVAELERGWPVFDTADAGEGSRAFAEKRVPVFRRA
>CP029617.1|AZM57134.1|7971796_7973473_-|acyl-CoA-synthetase
MEYNLADLFESVVDVVPGREALVYIDHPGTGAERRLTYAELDAAANRLAHHLIDSGLKPGEHLGLHLYNGVEYLQTVLACLKARLVPVNVNYRYVEDELVYLYRDADLAALVFDAEFTGRVAAALPRTEKLRHLIRVGEPPSPAAPSASTDTADATDAADVTDTVDALDIVAFTDAEAAGSPDRGFGPRSPDDLFIIYTGGTTGMPKGVMWRQEDLFFAGLFGGEPAGEPVKRPEELAERVAAGGPGLTFFPAPPLMHGTSTLTSFIAFHYGQRVALHRKYVPEEVLRTIEREKVSSVSLVGDAMLRPLIDALRGPLKGTDLSSLFSVSSSGAIMSETVRAQFQELVPHVLLLNNFGSSESGSNGKATDDSGPRKGFRLEVNERTRVVDPATHEPVAVGEPGRLAQRGHVPLGYYNDPVKTAETFFQKDDERWVLLGDMATVDEDGIVTVLGRGSQCINTGGEKVYPEEVEQALKSHPDVYDALVAGVPDARWGSRVAAVIQLRPGAPALDLEAVQTHCRALLAGYKIPRAVVFTDHIQRSPSGKADYRWAKTVAAGA
>CP029617.1|AZM57133.1|7970147_7971704_+|GntR-family-transcriptional-regulator
MPCCLREVVQGSCPSGPLVATLWCDWPWKYGQSKENGVVDALGSRQLAALLPDSAGRRPAYRHLAQAISELILDGRIALHVRLPAERELAGALNTSRTTVTAVYDLLREGGYAHSRQGAGTWTALPEGRATSGVRRLLAAAEESAIDLARAAPALPRDTLAAALTRVAPHLADHADTPGYHPYGLPELRAAVAERFTRRGLPTMPEQILVTAGAQHALTLVLGLLCRPGDRVLAENPSYPNALEAMRRARLRTVPVPVTDTGWDTEIVESTFRQAVPQLAYLIPDFHNPTGCLMPEGERGRVLRAAQRSGAWLVVDETLAELALDAPAPAPFVSHAAPGGTGQLITIGSMSKTHWAGLRVGWLRAPARLVTELAGQRVATDMGGSVLDQLLALDLLDRADELPASRLEQLRGRRAALAAALAEHLPRWSWRLPPGGLSLWVDLGQPIASALAERALEHGVRIESGACFATDPGVFEQRLRIPYTLPGDTLREAVCRLATAYGGGLAPVAAARRPHWVA
>CP029617.1|AZM58121.1|7968958_7969534_+|chorismate-mutase
MGAVAAALFAGSSGAVAVPAPAVVAGAATGSYGQLRPLAELSARRLAAADLVAAAKYGTGSPIDDPAREKQVLEAVARQARESGGDPEATVRIFRDQIEANKVVQRELFRRWDADPSRAPKERPDLAEVREEINRINGGLVRGIAASAGARTAPYCGGVLTAAAAHTRHADRLDALHTLALGRALRSVCAG
>CP029617.1|AZM58120.1|7967972_7968818_+|alpha/beta-hydrolase
MPVFSAYDGTQLAYHEKGDGAPLLCVPGGPMRASVYLGDLGGLTAHRRLILLDLRGTGDSAAPDDTSTYRCDRQTDDVEALREHLGLDQVDVLGHSAGGDLATLYAARHPKRIRTLILVTPATLAVGGVVTDEDRREAAELRKDEPWYPAAEVALREIAQGRTPTSGWDVIGPLLYGRWDAEAQTHRAQSTAQKNLAASEAYYGEAFFDPPATRAALTAMTAPVLVLAGAYDGGPSPARAEELAALFPGGVCQVQPGGGHFPWLDDPEWFTRRVAGFLAQH
>CP029617.1|AZM58119.1|7966497_7967787_-|phenylacetate--CoA-ligase
MPPQLDAAERLGPRELGALQLERLQDTLLHAYENVPFYRAAFDKAGLRPDDCRSLADLALFPFTTKDDLRANYPFGMFAVEQSEVRRLHASSGTTGLPTVVGYTERDLSMWADVVARSIRAAGGRPGDKVHVAYGYGLFTGGLGAHYGAERLGCTVIPASGGMTARQVRLILDFRPEIIMVTPSYMLTLLDEFERQGIDPRTTSLRVGIFGAEPWTEEMRREIEERFAIDAVDIYGLSEVIGPGVAQECLETKDGLHIWEDHFYPEVVDPITGEVLPDGERGELVFTSLTKEAMPVVRYRTRDLTRLLPGTARVFRRMEKVTGRSDDMVILRGVNLFPTQIEEIVLRTAGVAPHFQLRLTREGRMDALTVRAEARADTPPERRAAAAREIAAAVKDGIGVSVGVDIVDPETLERSVGKFKRIVDLRERG
>CP029617.1|AZM57132.1|7964988_7966491_+|acyl-CoA-synthetase
MTGVRESTVDAVLSRSARRTPRRTALHYGERSWTYAELDDAVSRAARVLRDHGLAPGERVGAYAHNSDAYLIGFLACARAGLVHVPVNQNLTGDDLAYIVRQSGSSLVLADPDLAGHLPADAATLPLRDTDDSLLARLAASAAYDGEGPGGDDLAQLLYTSGTTAQPKGAMMSHRALVHEYASAITALDLKESDKPVHSLPLYHSAQMHVFLMPYLAVGAENTVLDGPDAERIFDLVEAGRADSLFAPPTVWIGLSNHPGFATRDLGALRKAYYGASIMPVPVLERLRSRLPGLGFYNCFGQSEIGPLATVLGPDEHEGRMDSCGRPVLFVEARVVDEDGREVPDGTEGEVVYRSPQLCDGYWDKPQESAEAFRDGWFHSGDLAVRDAEGYFTVVDRVKDVINSGGVLVASRQVEDALYTHGGVAEAAVIGLPDERWIEAVTAVVVRKDKELSEAELIAHAREKLAHFKAPKRVLFVDELPRNASGKILKRELRDRFSAS
>CP029617.1|AZM58118.1|7962410_7964816_-|penicillin-amidase
MAAAGITLLTAVALLPAGAVAAPRDAHPSGGGLHATIRYTQYGIPHILAKDYANLGFGTGWAQAADQVCTLADGYVTVRGERSRHFGPEASPGAALSSASTNLSSDLYFRGVRKAGTVEKLLKQPAPAGPSRRTKELMRGFAAGYNAWLKQNRVTDPACAKADWVRPITPLDVARHGFAVQVLGGQGRGIDGITGARPPGAADKDRATERNPAADPRRTAKAARELFSAQDADMGSNAVAFHGTTTANGKGLLLGNPHYPWQGGRRFWQSQQTIPGELNVSGASLLGTGVVNIGFNEDVAWSHTVATGVPLNLHQLTLDPADPTTYLVDGKPHKMTKRTVTVPVKGGSAPVTRTQWWTRYGPVVSGLGPQLPLPWSSTTAYALNDPNAANLRGSDTNLGFGKARSTAGILKSLRETQGLPWVNTVAADRRGHSLLTQSQVLPRITDELAERCSTDLGKITYPASGVAVLDGSRGACALGSDEDAVQPGIFGPSRMPTLKNAPYAENSNDSAWLSNADRPITGYERVFGTIGTQRSLRTRGGIQDVAAMAKKGRLTVADLQRQQFANRVPAADLAADDAAKACAALPGGMATGSDGKAVDVSKACKVLARWDHRMDTNSRGALLFDRFWRMLTATVPRAQLWKVPFSAADPVRTPHTLDTSVPGFPKALADAVSELEAAGIALNAPLGENQYVVRGGKRLPVHGGTESLGVWNKIEATWDPKAGYTEVAHGSSHIQAVGWGEGRCPKARTLLTYSQSSEPGSPHFSDQTRLYAKERWVTSRFCEKDILGDPALKVVRVRERR
>CP029617.1|AZM57131.1|7960791_7962357_+|acyl-CoA-synthetase
MSTPASSTPPNGFWAQAVADPGRTVLVAPGGEQWTAGRLHSAVNQLVHGLRAAGLERGDAFAVVLPNGVEFLTAYLAAAQAGFYLVPVNHHLVGPEIAWIVADSGAKVLIAHERFADAAVAAADEAALPATHRYAVGEVSGFRPYRQLLEGQPESVPENRTLGWVMNYTSGTTGRPRGIRRPLSGKLPEESYLGGFLGIFGIKPFDGNVHLVCSPLYHTAVLQFAGAALHIGHPLVVMDKWTPEEMLRLIDAHRCTHTHMVPTQFHRLLALPEATKAAYDVSSMRHAIHGAAPCPDHVKRAMIEWWGECVEEYYAASEGGGAFATAQEWLKKPGTVGKAWPISELAVFDDDGNRLPPGELGTVYMKMSTGGFSYHKDESKTRKNRIGDFFTVGDLGLLDEDGYLFLRDRKIDMIISGGVNIYPAEIESALLTHPAVADAAAFGIPHDDWGEEVKAVVEAAEGRTADDALAAEILAHCERRLAGYKRPKSVDFIEAMPRDPNGKLYKRRLRDPYWEGRERAM
>CP029617.1|AZM57130.1|7959682_7960795_+|monooxygenase
MQTELSRRLGVEHAIFGFTPFPAVAAAISRAGGFGVLGAVRYTAPDELARDLDWMQEHVDGMPYGLDVVMPAKKVEGVTEVDVEAMIPEGHRQFVKDTLAKHGVPELPEGEASGWRITGWMEQVARDQLDVAFDYPIALLANALGSPPADVIDRAHGNDVLVAALAGSARHARKHADAGIDIVVAQGYEAGGHTGEIASMVLTPEAVEAVAPMPVLAAGGIGSGEQIAAALALGAQGVWLGSLWLTTTEADLHSPALTRKLLAAGSGDTVRSRALTGKPARQLRTEWTDAWDDPQGPGPLPMPLQGLLVAEAVSRIQKYEVRNLLGTPVGQIVGRMNSERGVQAVFDDLTRGFERAVDRINRIAGRGSQS
>CP029617.1|AZM57136.1|7974690_7975653_+|DNA-binding-protein
MASAPSSGVLRAPLVVEFPFTRSLGPVQSAFLTGLRERVVLGVKARDGRTLVPPVEYDPVTAEEIRDLVEVAATGTVTTWAWNHEPRRGQPLATPFAWVLVKLDGADTGLLHALDAPGPDAVRTGMRVRVRWAAERVGAITDIACFEPYEGERGARQGAPHSGEFAEPVTGIVAPARLDYTYSPGRAQTAYINALSAQKTVGERCPSCRKVYVPPRGACPTCGVATAERVEVGPRGTVTTYCIVNIKAKNLDIEVPYVYAHIALDGADLALHARIAGIPYDEVRMGLRVEPVWTEGGRFPDHYRPTGEPDADYDTYKELI
>CP029617.1|AZM58122.1|7975677_7976733_+|lipid-transfer-protein
MRPARDVAVVAFGQTDHLRSTDELSEVEMLMPVLHQVLAATGLRTSDIGFTCSGSCDYLAGRAFSFTMALDGVGAWPPISESHVEMDGAWALYEAWTALQTGEADTALVYSYGKSSPGSVRDVLTRQLDPYYLAPLWPDSVALAALQAQALIDAGETDEPALAGVARRSRADATANPHAQLSGSVAQGDYVVRPLRTGDCPPVGDGAAAVILAAGERARDLCERPAWIRGIDHRVEAHGLGVRDLTDSPSTRLAAERAGVFERPVDTAELHAPFTSQEVVLRKALRLGDDVTVNPSGGALAANPMMAAGLIRIGEAAARIHRGASHRAVAHATSGPCLQQNLVALLEGDTR
>CP029617.1|AZM58123.1|7976777_7977944_+|thiolase-domain-containing-protein
MGKEPVAVVGIGQTKHVAARRDVSIAGLVREAAQRALVDAELTWADIDAVVIGKAPDFFEGVMMPELYLADALGAVGKPMLRVHTAGSVGGSTALVAANLVAGRVHGTVLTLAFEKQSESNAMWGLSLPIPFQQPLLAGAGGFFAPHVRAYMRRTGAPDTVGSLVAYKDRRNALKNPYAHLHEEDITLEKVQASPMLWDPIRYSETCPSSDGACAMILTGRAGAARSPRPPAWMHGGAMRSEPTLFAGKDFVSPQAGKDCAADVYRQAGITDPRREIDAAEIYVPFSWYEPMWLENLGFAAEGEGWKLTESGVTELDGDLPVNMSGGVLSTNPIGASGMIRFAEAALQVRGQAGAHQVEGARRALGHAYGGGAQFFAMWLVGAEPPAT
>CP029617.1|AZM57137.1|7978050_7978293_+|DUF397-domain-containing-protein
MADSTTQQHPLAGWDKPELDLSTADWQSSSEGRGDVEIAFVEGFVAMRNGRRPESPSLIFTPAEWGAFVHGAREGEFDLT
>CP029617.1|AZM57138.1|7978383_7979307_+|hypothetical-protein
MSSEPVSGGWPGGGTGPVVAAVDGSAGSGRALEWALTAARLRDAPLRIAHVRTYDIPLVDGPSAPVRMRADSDPVLDEVRACLDGRAGLPPLEFVSVDGRPGRELPRLGARARLLVLGSRGRGGFASLLLGSNGLTCAREAPCPVVVVPRPHGEAGEAVPADRPRVVLGLAVPAPDENALAYAFAEAGRRGARLQVIAAYAWSVLSLTPVGDFVLNAVADQETEKAYGELAAAQLAPYRERHPDVPVDVVLASGDAAGHLVDASHAAELVVVGRHRRGPARGRVLGSVTHAVLLHSACPVAVVPPPT
>CP029617.1|AZM57139.1|7979323_7980208_-|6-phosphogluconate-dehydrogenase
MNNTTDTHVTVIGLGLMGQALSRAFLKAGHPTTVWNRTAAKADRLVAEGALLAPTFGDALKASPLTIVCVTDYPALRELLATTDADLAGTTLVNLTSGDSAQARETARWAEQRGARYLDGAIMAVPPVIGTADAVILHSGPESDFEAHKPVLEALGTVSYLGADHGLASLYDVAGLAMMWSVLNAWLQGTAMLRTAGVDAATYAPFARQIAAGVAEWLPGYAEQIDKGSFPAEVSALETDARAMDHLIEESEALGVNAELPKLIKAMAARSIAAGHGGEQYPVLIEEFSKPHEG
>CP029617.1|AZM57140.1|7980258_7980666_+|MerR-family-transcriptional-regulator
MRIGELGRRTGVHAHQLRYYEAQGLLEADRGANGYREYDEGAVLRVRQIRHLLGAGLSSEDIAYLLPCAVGEVPELPGCPDLLAAMRSRLRRIDEQIDGLARSRAALAEYVAAAERVGGESYGPFDGADLESVPA
>CP029617.1|AZM58124.1|7980734_7981442_-|hypothetical-protein
MDYWRAGLTDVPDEVWRHPRPEALLLADNALTHLPARIGTLKALHTLDLGHNKLRAVPAELGDLPSLSRFLYLHDNALTELPASLGRLTRLAYLNVGENRLTALPDTLGSLAGLVELRAQHNALSRLPETIGCLTALRELWLRGNRLRELPPSVGALSGLRELELRENAFTTVPEALRGLPLLRRLDLRANHLTELPGWVAELPSLEKLDLRWNGVRADDRVLRALDARGCVVLR
>CP029617.1|AZM57141.1|7981834_7982335_+|hypothetical-protein
MSFLRRRSSATPAGPDFDVLAMDPGDWPGNLGAGLLPAPDGSCQGVFLRYDLFGGRGPAMIIGNLPEGAPARDTAEGEVPFEVAQLLIALENEEEVTVVSTEDVPVMQGDNLLIVRRLKLSESRISCVQFDRSDNVLVTIAAWDRPITDDLYALLKPLPAELFQQA
>CP029617.1|AZM57142.1|7982495_7984829_+|alpha-L-fucosidase
MKSAIGGAAALAAGGGALADAEAAEESPSDTSDELLLWYAAPATDWEREALPIGNGALGAMVFGTLTRERLQFNEKTLWTGGPGSKEGYDSGNWRAPRPGALDAVRRELDEKGRLDPAAVAARLGQPRRGYGAHQTFGDLHIDVPDAPAAPGTAYRRSLDLDQGLATVTYRHERVRHHREFFASHPHGVIVGRLSADHPAKVTCTLRHTSPRTDFTARADGDRITVRGELADNALKFEAQLRVGHQGGTRVTHDDGSITVTGADHVWFVLAAGTDYADTYPHYRGEDPHATVTRAVDKAIEAGHGALRARHLRDHRALFGRVALDIGQTLPADVPTDRLLKQYGGGDGAADRALEALFFQYGRYLLIASSRAGSLPANLQGLWNHSTNPPWSADYHTNINLQMNYWPAEAANLAETTAPYDRFVQALRAPGRRTAEEMFASRGWVVHNETNPYGFTGVHDWSTAFWFPEAAAWLTAQLYEHYRFGGSTDYLRSTAYPAMKEAALFWLDNLRTDPRDGTLVATPSYSPEHGDFTAGGAMAQQIVHELLTSTLEAARVLGDSADFRAELEKSLGTLDPGLRIGSWGQLQEWKADMDDPADQHRHLSHLYALHPGRQIEAGSKWAEAAKVSLRARGDGGTGWSKAWKINFWARLRDGDHAHQMLREQLKSSTLPNLWDTHPPFQIDGNYGATSGIVEMLLQSQHDVIDILPALPTHWPDGSVRGLRARGGATIDITWRSGRATRIALKASRTRELTVRSTLFRGGTRTFRARAGQRYVLD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029617_6	6.1\|2246458\|34\|CP029617\|CRISPRCasFinder	2246458-2246491	34	CP029617.1	2163137-2163170	0	1.0
CP029617_6	6.1\|2246458\|34\|CP029617\|CRISPRCasFinder	2246458-2246491	34	CP029617.1	2163013-2163046	2	0.941
CP029617_6	6.1\|2246458\|34\|CP029617\|CRISPRCasFinder	2246458-2246491	34	CP029617.1	2163075-2163108	2	0.941

1. spacer 6.1|2246458|34|CP029617|CRISPRCasFinder matches to position: 2163137-2163170, mismatch: 0, identity: 1.0

agacatccggcgcgaagcggcgggacagggcatc	CRISPR spacer
agacatccggcgcgaagcggcgggacagggcatc	Protospacer
**********************************

2. spacer 6.1|2246458|34|CP029617|CRISPRCasFinder matches to position: 2163013-2163046, mismatch: 2, identity: 0.941

agacatccggcgcgaagcggcgggacagggcatc	CRISPR spacer
agacatccggcgcgaagcggcggaacaggacatc	Protospacer
***********************.*****.****

3. spacer 6.1|2246458|34|CP029617|CRISPRCasFinder matches to position: 2163075-2163108, mismatch: 2, identity: 0.941

agacatccggcgcgaagcggcgggacagggcatc	CRISPR spacer
agacatccggcgcgaagcggcggaacaggacatc	Protospacer
***********************.*****.****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029617_2	2.1\|1354440\|26\|CP029617\|CRISPRCasFinder	1354440-1354465	26	NZ_CP050096	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b3, complete sequence	179390-179415	4	0.846
CP029617_2	2.1\|1354440\|26\|CP029617\|CRISPRCasFinder	1354440-1354465	26	NZ_CP050102	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b2, complete sequence	160626-160651	4	0.846
CP029617_2	2.1\|1354440\|26\|CP029617\|CRISPRCasFinder	1354440-1354465	26	NZ_CP050107	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b1, complete sequence	197854-197879	4	0.846
CP029617_2	2.1\|1354440\|26\|CP029617\|CRISPRCasFinder	1354440-1354465	26	NZ_CP050112	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b5, complete sequence	197853-197878	4	0.846
CP029617_4	4.1\|2109980\|31\|CP029617\|CRISPRCasFinder	2109980-2110010	31	NZ_CP048816	Caulobacter rhizosphaerae strain KCTC 52515 plasmid unnamed	57084-57114	5	0.839
CP029617_12	12.1\|4247473\|28\|CP029617\|CRISPRCasFinder	4247473-4247500	28	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	362569-362596	5	0.821
CP029617_12	12.1\|4247473\|28\|CP029617\|CRISPRCasFinder	4247473-4247500	28	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	362635-362662	5	0.821
CP029617_12	12.1\|4247473\|28\|CP029617\|CRISPRCasFinder	4247473-4247500	28	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	362578-362605	5	0.821
CP029617_12	12.1\|4247473\|28\|CP029617\|CRISPRCasFinder	4247473-4247500	28	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1625566-1625593	5	0.821
CP029617_12	12.1\|4247473\|28\|CP029617\|CRISPRCasFinder	4247473-4247500	28	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1567126-1567153	6	0.786
CP029617_3	3.1\|1727326\|28\|CP029617\|CRISPRCasFinder	1727326-1727353	28	NZ_CP049731	Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence	191231-191258	7	0.75
CP029617_4	4.1\|2109980\|31\|CP029617\|CRISPRCasFinder	2109980-2110010	31	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	2004680-2004710	7	0.774
CP029617_4	4.1\|2109980\|31\|CP029617\|CRISPRCasFinder	2109980-2110010	31	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	993536-993566	7	0.774
CP029617_4	4.1\|2109980\|31\|CP029617\|CRISPRCasFinder	2109980-2110010	31	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	1622625-1622655	7	0.774
CP029617_4	4.1\|2109980\|31\|CP029617\|CRISPRCasFinder	2109980-2110010	31	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	495319-495349	8	0.742
CP029617_4	4.1\|2109980\|31\|CP029617\|CRISPRCasFinder	2109980-2110010	31	MH834598	Arthrobacter phage Auxilium, complete genome	25890-25920	9	0.71
CP029617_4	4.1\|2109980\|31\|CP029617\|CRISPRCasFinder	2109980-2110010	31	MH910037	Arthrobacter phage Isolde, complete genome	28474-28504	9	0.71
CP029617_6	6.1\|2246458\|34\|CP029617\|CRISPRCasFinder	2246458-2246491	34	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	1123154-1123187	9	0.735
CP029617_6	6.1\|2246458\|34\|CP029617\|CRISPRCasFinder	2246458-2246491	34	NZ_CP030127	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence	581012-581045	9	0.735
CP029617_6	6.1\|2246458\|34\|CP029617\|CRISPRCasFinder	2246458-2246491	34	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	813532-813565	10	0.706
CP029617_14	14.1\|5494982\|37\|CP029617\|CRISPRCasFinder	5494982-5495018	37	NZ_LR134454	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 12, complete sequence	256088-256124	10	0.73

1. spacer 2.1|1354440|26|CP029617|CRISPRCasFinder matches to NZ_CP050096 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b3, complete sequence) position: , mismatch: 4, identity: 0.846

tacggggccttcactgcgggtgtggt	CRISPR spacer
ggcggggccttcactgcttgtgtggt	Protospacer
 .***************  *******

2. spacer 2.1|1354440|26|CP029617|CRISPRCasFinder matches to NZ_CP050102 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b2, complete sequence) position: , mismatch: 4, identity: 0.846

tacggggccttcactgcgggtgtggt	CRISPR spacer
ggcggggccttcactgcttgtgtggt	Protospacer
 .***************  *******

3. spacer 2.1|1354440|26|CP029617|CRISPRCasFinder matches to NZ_CP050107 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b1, complete sequence) position: , mismatch: 4, identity: 0.846

tacggggccttcactgcgggtgtggt	CRISPR spacer
ggcggggccttcactgcttgtgtggt	Protospacer
 .***************  *******

4. spacer 2.1|1354440|26|CP029617|CRISPRCasFinder matches to NZ_CP050112 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b5, complete sequence) position: , mismatch: 4, identity: 0.846

tacggggccttcactgcgggtgtggt	CRISPR spacer
ggcggggccttcactgcttgtgtggt	Protospacer
 .***************  *******

5. spacer 4.1|2109980|31|CP029617|CRISPRCasFinder matches to NZ_CP048816 (Caulobacter rhizosphaerae strain KCTC 52515 plasmid unnamed) position: , mismatch: 5, identity: 0.839

ggtctccgccctggtctggccg--cgggccgcg	CRISPR spacer
ggtcttcgccctggtcttgccgctcaggccg--	Protospacer
*****.*********** ****  *.*****

6. spacer 12.1|4247473|28|CP029617|CRISPRCasFinder matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

tggcgggctttcccacccacccacccat	CRISPR spacer
tggtgggatttcccacccacccacgcgg	Protospacer
***.*** **************** *.

7. spacer 12.1|4247473|28|CP029617|CRISPRCasFinder matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

tggcgggctttcccacccacccacccat	CRISPR spacer
tggtgggatttcccacccacccacgcgg	Protospacer
***.*** **************** *.

8. spacer 12.1|4247473|28|CP029617|CRISPRCasFinder matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

tggcgggctttcccacccacccacccat	CRISPR spacer
tggtgggatttcccacccacccacgcgg	Protospacer
***.*** **************** *.

9. spacer 12.1|4247473|28|CP029617|CRISPRCasFinder matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

tggcgggctttcccacccacccacccat	CRISPR spacer
tggtgggatttcccacccacccacgcgg	Protospacer
***.*** **************** *.

10. spacer 12.1|4247473|28|CP029617|CRISPRCasFinder matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.786

tggcgggctttcccacccacccacccat	CRISPR spacer
tggtgggatttcccacccacccatgcgg	Protospacer
***.*** ***************. *.

11. spacer 3.1|1727326|28|CP029617|CRISPRCasFinder matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 7, identity: 0.75

aggggcaggcctgcccccgggaggggtc	CRISPR spacer
tagggcaggcccgcccccgggaggtcat	Protospacer
 .*********.************   .

12. spacer 4.1|2109980|31|CP029617|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.774

ggtctccgccctggtctggccgcgggccgcg	CRISPR spacer
tgacagcaccatggtctggccgccggccgcg	Protospacer
 * *  *.** ************ *******

13. spacer 4.1|2109980|31|CP029617|CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 7, identity: 0.774

ggtctccgccctggtctggccgcgggccgcg	CRISPR spacer
ggagttggccctggtctcgccgcggaccgcc	Protospacer
**  *. ********** *******.****

14. spacer 4.1|2109980|31|CP029617|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 7, identity: 0.774

ggtctccgccctggtctggccgcgggccgcg	CRISPR spacer
tgacagcaccatggtctggccgccggccgcg	Protospacer
 * *  *.** ************ *******

15. spacer 4.1|2109980|31|CP029617|CRISPRCasFinder matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 8, identity: 0.742

ggtctccgccctggtctggccgcgggccgcg	CRISPR spacer
cttctccgccgtggtcttgccgcgggcgagc	Protospacer
  ******** ****** ********* .

16. spacer 4.1|2109980|31|CP029617|CRISPRCasFinder matches to MH834598 (Arthrobacter phage Auxilium, complete genome) position: , mismatch: 9, identity: 0.71

ggtctccgccctggtctggccgcgggccgcg	CRISPR spacer
aatgagcgccgtggtctggccgccggccggt	Protospacer
..*   **** ************ *****

17. spacer 4.1|2109980|31|CP029617|CRISPRCasFinder matches to MH910037 (Arthrobacter phage Isolde, complete genome) position: , mismatch: 9, identity: 0.71

ggtctccgccctggtctggccgcgggccgcg	CRISPR spacer
aatgagcgccgtggtctggccgccggccggt	Protospacer
..*   **** ************ *****

18. spacer 6.1|2246458|34|CP029617|CRISPRCasFinder matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

agacatccggcgcgaagcggcgggacagggcatc	CRISPR spacer
gttcatccggcgcgaagcggccggagaggatcgc	Protospacer
.  ****************** *** ***..  *

19. spacer 6.1|2246458|34|CP029617|CRISPRCasFinder matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

agacatccggcgcgaagcggcgggacagggcatc	CRISPR spacer
gcaggttcggcgcgaagcggccggccagggccgc	Protospacer
. * .*.************** ** ******  *

20. spacer 6.1|2246458|34|CP029617|CRISPRCasFinder matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 10, identity: 0.706

agacatccggcgcgaagcggcgggacagggcatc	CRISPR spacer
ccaggccaagcgcgaagcggcgcgacagcgcatt	Protospacer
  * ..* .************* ***** ****.

21. spacer 14.1|5494982|37|CP029617|CRISPRCasFinder matches to NZ_LR134454 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 12, complete sequence) position: , mismatch: 10, identity: 0.73

ggcgaccggggcctccgcctcggcgaccggctccgca	CRISPR spacer
ggcgaccgcggcctccgcgtcggcgagtgcagctgtg	Protospacer
******** ********* ******* .*   *.*..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

833965 : 844104

Rhodococcus_phage(50.0%)

capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZM51756.1\|833965_838237_-	hypothetical protein	D6PSZ3	Lactobacillus_phage	3.8e-22	41.9
AZM51757.1\|838256_838535_-	hypothetical protein	NA	NA	NA	NA
AZM51758.1\|838549_838972_-	hypothetical protein	G9FHI3	Rhodococcus_phage	4.7e-26	50.4
AZM51759.1\|839044_839383_+	hypothetical protein	A0A2D1GPL8	Mycobacterium_phage	1.8e-07	36.3
AZM51760.1\|839476_839965_-	hypothetical protein	NA	NA	NA	NA
AZM51761.1\|839964_840381_-	hypothetical protein	G9FHI1	Rhodococcus_phage	7.6e-45	63.8
AZM51762.1\|840656_840995_-	hypothetical protein	NA	NA	NA	NA
AZM51763.1\|841006_841450_-	hypothetical protein	NA	NA	NA	NA
AZM51764.1\|841451_842063_-	hypothetical protein	G9FHH7	Rhodococcus_phage	3.1e-34	43.0
AZM51765.1\|842068_842314_-	hypothetical protein	NA	NA	NA	NA
AZM51766.1\|842313_842748_-	hypothetical protein	NA	NA	NA	NA
AZM51767.1\|842817_844104_-\|capsid	phage major capsid protein	M4QRD3	Tetraselmis_viridis_virus	1.4e-25	27.0

DBSCAN-SWA_2

2800152 : 2845556

Streptomyces_phage(93.48%)

integrase,head,capsid,tail

attL 2799943:2799986|attR 2849694:2849737

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2799943:2799986	attL	NA	NA	NA	NA
AZM57620.1\|2800152_2801079_+\|integrase	integrase	A0A142F1N9	Bacillus_phage	2.2e-12	25.0
AZM57621.1\|2801551_2801971_-	hypothetical protein	NA	NA	NA	NA
AZM57622.1\|2802125_2802566_+	hypothetical protein	NA	NA	NA	NA
AZM53299.1\|2802459_2802801_+	hypothetical protein	NA	NA	NA	NA
AZM53300.1\|2802896_2803250_+	hypothetical protein	A0A0M3UKC5	Streptomyces_phage	4.1e-23	53.6
AZM53301.1\|2803246_2803510_+	hypothetical protein	NA	NA	NA	NA
AZM53302.1\|2803506_2803929_+	hypothetical protein	NA	NA	NA	NA
AZM53303.1\|2803925_2804213_+	hypothetical protein	A0A0M4RBC4	Streptomyces_phage	1.3e-24	68.3
AZM53304.1\|2804209_2804605_+	hypothetical protein	NA	NA	NA	NA
AZM53305.1\|2804601_2805432_+	hypothetical protein	A0A0M4R1V5	Streptomyces_phage	5.4e-135	84.8
AZM57623.1\|2805454_2806522_+	hypothetical protein	A0A0M4QTT9	Streptomyces_phage	1.3e-144	72.1
AZM57624.1\|2806542_2807337_+	DNA polymerase III subunit epsilon	Q6VY79	Streptomyces_phage	6.2e-96	70.3
AZM53306.1\|2807333_2807792_+	hypothetical protein	A0A0M4RQ88	Streptomyces_phage	7.9e-35	48.6
AZM53307.1\|2807788_2808397_+	hypothetical protein	Q6VY77	Streptomyces_phage	1.0e-66	68.8
AZM57625.1\|2808438_2809119_+	DNA cytosine methyltransferase	A0A2L1IVN1	Streptomyces_phage	6.6e-54	49.8
AZM53308.1\|2809115_2809316_+	hypothetical protein	NA	NA	NA	NA
AZM53309.1\|2809312_2809588_+	hypothetical protein	A0A0M4S2J7	Streptomyces_phage	1.3e-29	72.5
AZM53310.1\|2809593_2810034_+	hypothetical protein	A0A0M3UKC6	Streptomyces_phage	5.6e-46	68.3
AZM53311.1\|2810030_2810387_+	hypothetical protein	A0A0M4QZK4	Streptomyces_phage	1.2e-30	63.0
AZM53312.1\|2810399_2811347_+	hypothetical protein	A0A0M4R9L6	Streptomyces_phage	2.5e-51	40.1
AZM53313.1\|2811343_2811835_+	hypothetical protein	A0A0M5M0M5	Streptomyces_phage	3.5e-33	57.9
AZM53314.1\|2811831_2812083_+	hypothetical protein	A0A0M4S3F5	Streptomyces_phage	5.6e-11	70.0
AZM53315.1\|2812604_2812826_+	hypothetical protein	NA	NA	NA	NA
AZM57626.1\|2812916_2813282_+	hypothetical protein	A0A0M4R1W0	Streptomyces_phage	1.5e-20	53.1
AZM53316.1\|2813278_2813710_+	hypothetical protein	NA	NA	NA	NA
AZM53317.1\|2813712_2813949_+	hypothetical protein	NA	NA	NA	NA
AZM57627.1\|2814331_2814961_+	hypothetical protein	A0A0M4S2K5	Streptomyces_phage	4.8e-67	73.2
AZM53318.1\|2815028_2815244_-	prevent-host-death family protein	A0A0M4QZL2	Streptomyces_phage	2.7e-22	80.3
AZM53319.1\|2815327_2816059_+	hypothetical protein	A0A0M4R9M3	Streptomyces_phage	1.6e-21	79.0
AZM53320.1\|2816191_2817238_+	hypothetical protein	A0A0M5M0U6	Streptomyces_phage	7.4e-97	54.0
AZM53321.1\|2817434_2818013_+	hypothetical protein	NA	NA	NA	NA
AZM53322.1\|2818009_2818519_+	hypothetical protein	NA	NA	NA	NA
AZM53323.1\|2818515_2819169_+	hypothetical protein	Q6VY63	Streptomyces_phage	3.1e-24	41.1
AZM53324.1\|2819333_2819531_+	hypothetical protein	NA	NA	NA	NA
AZM53325.1\|2819600_2819801_+	hypothetical protein	NA	NA	NA	NA
AZM53326.1\|2820283_2820544_+	hypothetical protein	A0A0M4R1W7	Streptomyces_phage	6.5e-18	65.3
AZM53327.1\|2820540_2820720_+	hypothetical protein	NA	NA	NA	NA
AZM53328.1\|2820709_2821006_+	HNH endonuclease	A0A0M4QTV1	Streptomyces_phage	4.0e-32	66.7
AZM57628.1\|2821305_2821884_+	DNA primase	Q6VY59	Streptomyces_phage	1.9e-70	69.7
AZM53329.1\|2821934_2822447_+	hypothetical protein	A0A2P1A0P1	Gordonia_phage	1.0e-22	44.5
AZM53330.1\|2822436_2824128_+	Terminase	A0A1B3AY92	Gordonia_phage	5.3e-161	52.6
AZM53331.1\|2824147_2825569_+	hypothetical protein	A0A0K1Y587	Streptomyces_phage	4.3e-172	63.6
AZM53332.1\|2825565_2826387_+	hypothetical protein	A0A0K1Y588	Streptomyces_phage	1.6e-102	70.1
AZM53333.1\|2826441_2827185_+	hypothetical protein	Q6VY53	Streptomyces_phage	6.4e-18	58.8
AZM53334.1\|2827200_2827590_+\|head	head decoration protein	Q6VY52	Streptomyces_phage	5.4e-45	67.2
AZM53335.1\|2827607_2828642_+\|capsid	phage capsid protein	A0A0K1Y5W3	Streptomyces_phage	8.2e-80	49.0
AZM57629.1\|2829001_2829409_+	hypothetical protein	A0A0K1Y592	Streptomyces_phage	3.9e-54	79.1
AZM57630.1\|2829405_2829759_+	hypothetical protein	A0A0K1Y5A7	Streptomyces_phage	6.2e-48	75.2
AZM53336.1\|2829761_2830031_+	hypothetical protein	A0A0K1Y5T2	Streptomyces_phage	3.2e-28	79.3
AZM53337.1\|2830030_2830435_+	hypothetical protein	A0A0K1Y5W8	Streptomyces_phage	6.7e-46	69.7
AZM53338.1\|2830508_2831177_+\|tail	phage tail protein	A0A0K1Y595	Streptomyces_phage	1.1e-96	79.3
AZM57631.1\|2831281_2831605_+	hypothetical protein	A0A0K1Y596	Streptomyces_phage	4.4e-40	72.9
AZM53339.1\|2831658_2832090_+	hypothetical protein	A0A0K1Y5B2	Streptomyces_phage	4.8e-50	69.4
AZM53340.1\|2832096_2836470_+	hypothetical protein	Q6VY42	Streptomyces_phage	8.0e-153	47.4
AZM53341.1\|2836474_2837365_+	hypothetical protein	A0A0K1Y5X3	Streptomyces_phage	7.9e-116	75.4
AZM57632.1\|2837364_2838513_+\|tail	phage tail protein	A0A0K1Y599	Streptomyces_phage	6.8e-144	65.9
AZM57633.1\|2838509_2839439_+	hypothetical protein	A0A0K1Y5A0	Streptomyces_phage	1.3e-108	66.3
AZM53342.1\|2839451_2840075_+	hypothetical protein	A0A0K1Y5B7	Streptomyces_phage	1.2e-46	45.9
AZM53343.1\|2840091_2842716_+	hypothetical protein	A0A0K1Y5U2	Streptomyces_phage	7.5e-138	43.9
AZM53344.1\|2842729_2842996_+	hypothetical protein	NA	NA	NA	NA
AZM53345.1\|2843261_2844206_+	CHAP domain-containing protein	NA	NA	NA	NA
AZM53346.1\|2844226_2844505_+	hypothetical protein	NA	NA	NA	NA
AZM53347.1\|2844543_2844876_+	hypothetical protein	A0A0K1Y5A5	Streptomyces_phage	4.7e-13	74.6
AZM53348.1\|2844872_2845556_+	hypothetical protein	A0A0M4QTS6	Streptomyces_phage	6.2e-28	77.5
2849694:2849737	attR	NA	NA	NA	NA

DBSCAN-SWA_3

3922483 : 3941823

Streptomyces_phage(75.0%)

capsid,head,coat,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZM57748.1\|3922483_3922906_+	hypothetical protein	D7NW47	Streptomyces_phage	3.9e-20	44.6
AZM54155.1\|3922889_3924530_+	hypothetical protein	D7NW48	Streptomyces_phage	5.1e-185	59.7
AZM54156.1\|3924540_3926070_+	hypothetical protein	D7NW49	Streptomyces_phage	7.6e-175	62.1
AZM54157.1\|3926066_3927032_+	hypothetical protein	A0A2H5BLR1	Streptomyces_phage	2.0e-40	38.8
AZM54158.1\|3927075_3927837_+	hypothetical protein	D7NW52	Streptomyces_phage	4.2e-41	59.5
AZM54159.1\|3927850_3928714_+\|coat	P22 coat protein - protein 5 domain protein	D7NW53	Streptomyces_phage	1.3e-70	50.2
AZM54160.1\|3928737_3929115_+	hypothetical protein	NA	NA	NA	NA
AZM54161.1\|3929663_3930257_+	hypothetical protein	D7NW55	Streptomyces_phage	3.2e-52	54.3
AZM57749.1\|3930307_3930595_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AZM54162.1\|3930605_3930932_+	hypothetical protein	D7NW57	Streptomyces_phage	2.3e-20	51.4
AZM54163.1\|3930934_3931312_+	hypothetical protein	D7NW58	Streptomyces_phage	3.2e-18	44.9
AZM54164.1\|3931308_3931518_+	hypothetical protein	NA	NA	NA	NA
AZM54165.1\|3931514_3931916_+	DUF3168 domain-containing protein	D7NW59	Streptomyces_phage	6.0e-39	62.6
AZM54166.1\|3931928_3932351_+\|capsid	outer capsid protein Hoc	D7NW60	Streptomyces_phage	1.6e-50	69.3
AZM54167.1\|3932350_3932563_+	hypothetical protein	NA	NA	NA	NA
AZM54168.1\|3932559_3932928_+	hypothetical protein	D7NW62	Streptomyces_phage	1.6e-25	52.5
AZM54169.1\|3932960_3933275_+	hypothetical protein	A0A0R6PJ91	Moraxella_phage	3.4e-05	52.9
AZM54170.1\|3933297_3935430_+	hypothetical protein	A0A1J0MC44	Streptomyces_phage	1.6e-21	40.7
AZM54171.1\|3935449_3936829_+	hypothetical protein	A0A0R8VCN8	Thermobifida_phage	4.6e-78	39.4
AZM54172.1\|3936839_3939536_+	hypothetical protein	A0A0R8V0A4	Thermobifida_phage	6.4e-217	42.4
AZM54173.1\|3939545_3940076_+	hypothetical protein	A0A0R8VCH8	Thermobifida_phage	9.1e-19	36.1
AZM54174.1\|3940140_3940935_+	N-acetylmuramoyl-L-alanine amidase	A0A2H4PI36	Streptomyces_phage	4.2e-52	43.6
AZM54175.1\|3940946_3941174_+	hypothetical protein	A0A0P0IKM2	Acinetobacter_phage	2.7e-12	59.6
AZM54176.1\|3941176_3941389_+	hypothetical protein	NA	NA	NA	NA
AZM54177.1\|3941388_3941823_+	hypothetical protein	Q6VY36	Streptomyces_phage	8.8e-36	52.9

DBSCAN-SWA_4

6391554 : 6403872

Synechococcus_phage(50.0%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZM56056.1\|6391554_6392172_-\|tail	phage tail protein	NA	NA	NA	NA
AZM56057.1\|6392168_6394148_-\|plate	putative baseplate assembly protein	NA	NA	NA	NA
AZM56058.1\|6394154_6394568_-\|plate	baseplate protein	A0A0E3F3H3	Synechococcus_phage	3.0e-09	34.4
AZM56059.1\|6394630_6396526_-	type IV secretion protein Rhs	NA	NA	NA	NA
AZM56060.1\|6396545_6397295_-	peptidase M23	NA	NA	NA	NA
AZM56061.1\|6397296_6397734_-\|tail	phage tail protein	NA	NA	NA	NA
AZM56062.1\|6397790_6398246_-	hypothetical protein	NA	NA	NA	NA
AZM56063.1\|6398418_6399102_+	hypothetical protein	NA	NA	NA	NA
AZM56064.1\|6399141_6399993_+	hypothetical protein	NA	NA	NA	NA
AZM56065.1\|6401322_6401769_-	hypothetical protein	NA	NA	NA	NA
AZM56066.1\|6401768_6402212_-\|tail	phage tail protein	NA	NA	NA	NA
AZM56067.1\|6402267_6403872_-\|tail	phage tail protein	J9PVC2	Bacillus_phage	1.9e-67	34.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029617

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection