CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034157	Cloacibacterium normanense strain NRS-1 chromosome, complete genome	0 crisprs	cas9,cas2,cas1,csa3,cas3,WYL,DEDDh	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

651779 : 706831

Streptococcus_phage(40.0%)

protease,transposase,integrase

attL 657196:657213|attR 714152:714169

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZI68912.1\|651779_652658_+\|transposase	IS982 family transposase	NA	NA	NA	NA
AZI68913.1\|653142_654135_-	hypothetical protein	NA	NA	NA	NA
AZI68914.1\|655176_655971_-	cation transporter	NA	NA	NA	NA
657196:657213	attL	NA	NA	NA	NA
AZI68915.1\|658232_658535_-	hypothetical protein	NA	NA	NA	NA
AZI68916.1\|659503_659710_-	hypothetical protein	NA	NA	NA	NA
AZI68917.1\|659711_660311_-	mercuric transport protein MerTP	NA	NA	NA	NA
AZI68918.1\|660307_660682_-	ArsR family transcriptional regulator	E4ZFI8	Streptococcus_phage	1.3e-06	27.6
AZI68919.1\|661774_662269_-	hypothetical protein	NA	NA	NA	NA
AZI68920.1\|662523_662769_-	hypothetical protein	NA	NA	NA	NA
AZI68921.1\|662978_664151_+\|transposase	IS4 family transposase	NA	NA	NA	NA
AZI68922.1\|664465_664834_-	hypothetical protein	NA	NA	NA	NA
AZI68923.1\|664808_665537_-	hypothetical protein	NA	NA	NA	NA
AZI68924.1\|665789_666239_-	hypothetical protein	NA	NA	NA	NA
AZI68925.1\|666231_667836_-	hypothetical protein	NA	NA	NA	NA
AZI68926.1\|667835_668918_-	restriction endonuclease	Q6DMW9	Streptococcus_phage	1.6e-33	29.1
AZI68927.1\|669217_669688_-	DUF4375 domain-containing protein	NA	NA	NA	NA
AZI68928.1\|670167_670851_-	hypothetical protein	NA	NA	NA	NA
AZI68929.1\|671070_673629_-	hypothetical protein	NA	NA	NA	NA
AZI68930.1\|674545_675169_-	hypothetical protein	NA	NA	NA	NA
AZI68931.1\|675494_675803_+	hypothetical protein	NA	NA	NA	NA
AZI68932.1\|676025_676859_-	GLPGLI family protein	NA	NA	NA	NA
AZI68933.1\|677025_677889_-	aminoglycoside 6-adenylyltransferase AadS	NA	NA	NA	NA
AZI68934.1\|678132_679056_-	hypothetical protein	NA	NA	NA	NA
AZI68935.1\|679290_679620_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
AZI68936.1\|679910_680594_-	hypothetical protein	NA	NA	NA	NA
AZI68937.1\|680793_681861_+\|integrase	integrase	S5W9T9	Leptospira_phage	4.0e-29	30.2
AZI68938.1\|682088_682352_+	AtpZ/AtpI family protein	NA	NA	NA	NA
AZI68939.1\|682793_683954_+	ATP synthase F0 subunit A	NA	NA	NA	NA
AZI68940.1\|684084_684279_+	ATP synthase F0 subunit C	NA	NA	NA	NA
AZI68941.1\|684364_684862_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA
AZI68942.1\|684863_685403_+	ATP synthase F1 subunit delta	NA	NA	NA	NA
AZI68943.1\|685419_686997_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
AZI68944.1\|687082_687940_+	ATP synthase F1 subunit gamma	NA	NA	NA	NA
AZI68945.1\|688479_689823_+	HlyC/CorC family transporter	NA	NA	NA	NA
AZI68946.1\|689862_690150_+\|protease	ATP-dependent Clp protease adaptor ClpS	NA	NA	NA	NA
AZI68947.1\|690447_692649_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
AZI68948.1\|692659_695221_-	outer membrane protein assembly factor	NA	NA	NA	NA
AZI68949.1\|695206_695935_+	RNA methyltransferase	NA	NA	NA	NA
AZI68950.1\|696033_696963_+	hypothetical protein	A0A1V0SBJ0	Catovirus	5.5e-27	28.9
AZI68951.1\|696966_697824_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
AZI68952.1\|697825_698329_-	phosphoribosyl-ATP pyrophosphatase	NA	NA	NA	NA
AZI68953.1\|698340_698652_-	hypothetical protein	NA	NA	NA	NA
AZI68954.1\|698734_699079_-	YtxH domain-containing protein	NA	NA	NA	NA
AZI68955.1\|699202_699877_-	(d)CMP kinase	NA	NA	NA	NA
AZI68956.1\|700601_700901_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AZI68957.1\|700893_701145_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
AZI68958.1\|701358_702807_-	DUF4365 domain-containing protein	NA	NA	NA	NA
AZI68959.1\|702931_703930_-	type IX secretion system protein PorQ	NA	NA	NA	NA
AZI68960.1\|704102_704810_+	UMP kinase	NA	NA	NA	NA
AZI68961.1\|704839_705394_+	ribosome recycling factor	NA	NA	NA	NA
AZI68962.1\|705476_706001_+\|transposase	transposase	NA	NA	NA	NA
AZI68963.1\|706084_706831_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.3e-75	55.2
714152:714169	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1754822 : 1818552

Pandoravirus(12.5%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZI70770.1\|1754822_1755440_-\|protease	Zn-dependent protease	NA	NA	NA	NA
AZI69825.1\|1755465_1756047_-	ribonuclease	NA	NA	NA	NA
AZI69826.1\|1756168_1756960_-	NAD(+) synthase	M1IPF8	Pelagibacter_phage	4.6e-59	50.4
AZI69827.1\|1756999_1757428_+	hypothetical protein	NA	NA	NA	NA
AZI69828.1\|1757430_1758411_+	gliding motility protein GldB	NA	NA	NA	NA
AZI69829.1\|1758480_1758804_+	gliding motility protein GldC	NA	NA	NA	NA
AZI69830.1\|1758884_1760024_+	PLP-dependent transferase	A0A0B5JD48	Pandoravirus	5.4e-24	31.1
AZI69831.1\|1760030_1760477_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AZI69832.1\|1760560_1761067_+	DinB family protein	NA	NA	NA	NA
AZI69833.1\|1761737_1762346_+	hypothetical protein	NA	NA	NA	NA
AZI69834.1\|1762348_1762897_+	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	8.3e-07	25.8
AZI69835.1\|1763083_1764499_+	HD domain-containing protein	A0A249XS88	Mycobacterium_phage	7.6e-28	31.7
AZI69836.1\|1764588_1765887_-	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA
AZI69837.1\|1766072_1767113_-	LysM peptidoglycan-binding domain-containing protein	S5M9Y4	Brevibacillus_phage	4.0e-18	36.5
AZI69838.1\|1767332_1768250_-	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
AZI69839.1\|1768349_1769228_+\|transposase	IS982 family transposase	NA	NA	NA	NA
AZI69840.1\|1769495_1769825_-	hypothetical protein	F5A397	Riemerella_phage	5.5e-14	39.8
AZI69841.1\|1769906_1770098_+	hypothetical protein	NA	NA	NA	NA
AZI69842.1\|1770103_1770631_+	DUF4136 domain-containing protein	NA	NA	NA	NA
AZI69843.1\|1770768_1772427_-	alkaline phosphatase family protein	NA	NA	NA	NA
AZI69844.1\|1772572_1773499_-	malate dehydrogenase	NA	NA	NA	NA
AZI69845.1\|1773689_1774514_+	serine acetyltransferase	NA	NA	NA	NA
AZI69846.1\|1774782_1775718_+	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	3.9e-81	52.5
AZI69847.1\|1775959_1777015_-	nucleoid-associated protein	NA	NA	NA	NA
AZI69848.1\|1777088_1779686_-	NACHT domain-containing protein	NA	NA	NA	NA
AZI69849.1\|1779779_1781192_-	DUF2779 domain-containing protein	NA	NA	NA	NA
AZI69850.1\|1781237_1782155_-	WYL domain-containing protein	NA	NA	NA	NA
AZI69851.1\|1782220_1782991_-	hypothetical protein	NA	NA	NA	NA
AZI69852.1\|1783119_1783341_-	hypothetical protein	NA	NA	NA	NA
AZI69853.1\|1783363_1783594_-	hypothetical protein	NA	NA	NA	NA
AZI69854.1\|1783736_1785635_-	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.0e-144	51.3
AZI69855.1\|1785822_1787892_+	polyphosphate kinase 1	NA	NA	NA	NA
AZI69856.1\|1787970_1788654_+	phosphatase PAP2 family protein	NA	NA	NA	NA
AZI69857.1\|1788853_1790992_+	S9 family peptidase	NA	NA	NA	NA
AZI69858.1\|1791156_1792701_-	serine hydrolase	NA	NA	NA	NA
AZI69859.1\|1792833_1793592_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	2.9e-50	49.0
AZI69860.1\|1793823_1795182_+	orotate phosphoribosyltransferase	A0A1V0SHG3	Hokovirus	1.5e-17	39.6
AZI69861.1\|1795836_1796748_+	AEC family transporter	NA	NA	NA	NA
AZI69862.1\|1796926_1799725_+	aminopeptidase	NA	NA	NA	NA
AZI69863.1\|1799778_1800648_-	T9SS C-terminal target domain-containing protein	NA	NA	NA	NA
AZI69864.1\|1800816_1801800_+	hypothetical protein	NA	NA	NA	NA
AZI69865.1\|1801894_1803161_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.4e-25	37.0
AZI70771.1\|1803303_1806492_+	hypothetical protein	NA	NA	NA	NA
AZI69866.1\|1806581_1807574_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
AZI69867.1\|1807631_1808396_+	exodeoxyribonuclease III	R4TWA8	Phaeocystis_globosa_virus	2.6e-35	33.8
AZI69868.1\|1808448_1808817_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	1.1e-18	51.0
AZI69869.1\|1809166_1810471_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
AZI69870.1\|1810728_1811631_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.5e-26	30.9
AZI69871.1\|1811633_1812176_-\|transposase	transposase	NA	NA	NA	NA
AZI69872.1\|1812311_1813292_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
AZI69873.1\|1813295_1814186_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
AZI69874.1\|1814606_1815821_-	glycosyltransferase WbuB	NA	NA	NA	NA
AZI69875.1\|1815823_1816960_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SJE0	Klosneuvirus	6.4e-102	49.2
AZI69876.1\|1816959_1817337_-	GxxExxY protein	A0A0P0YNF4	Yellowstone_lake_phycodnavirus	7.2e-10	35.2
AZI69877.1\|1817673_1818552_+\|transposase	IS982 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2668413 : 2682174

Bacillus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZI70611.1\|2668413_2669415_-	glycosyltransferase	A0A1V0SAH6	Catovirus	3.2e-12	33.3
AZI70612.1\|2669484_2670594_+	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	2.4e-138	65.7
AZI70613.1\|2670590_2671685_-	glycosyltransferase	NA	NA	NA	NA
AZI70614.1\|2671687_2673484_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.5e-23	24.7
AZI70615.1\|2673487_2674348_-	glucose-1-phosphate thymidylyltransferase	H9NC64	Sphingomonas_phage	8.5e-99	62.5
AZI70803.1\|2674402_2674783_-	GxxExxY protein	A0A0P0YNF4	Yellowstone_lake_phycodnavirus	1.3e-06	33.3
AZI70616.1\|2674811_2675894_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.7e-83	47.8
AZI70617.1\|2675974_2677285_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	4.6e-80	38.9
AZI70618.1\|2677476_2677944_+	ribosome assembly cofactor RimP	NA	NA	NA	NA
AZI70619.1\|2678001_2679237_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
AZI70620.1\|2679297_2682174_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	1.1e-17	25.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage