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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP034123 Klebsiella pneumoniae strain BJCFK909 chromosome, complete genome 1 crisprs csa3,RT,cas3,DEDDh,DinG,WYL 0 0 12 0
CP034127 Klebsiella pneumoniae strain BJCFK909 plasmid p4s2, complete sequence 0 crisprs NA 0 0 0 0
CP034126 Klebsiella pneumoniae strain BJCFK909 plasmid p3s1, complete sequence 0 crisprs RT 0 0 1 0
CP034124 Klebsiella pneumoniae strain BJCFK909 plasmid p1b1, complete sequence 0 crisprs RT 0 0 2 0
CP034125 Klebsiella pneumoniae strain BJCFK909 plasmid p2b2, complete sequence 0 crisprs RT 0 0 2 0

Results visualization

1. CP034123
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034123_1 4623922-4624016 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 448664 : 518042 74 uncultured_Caudovirales_phage(61.11%) terminase,portal,tRNA,capsid,head,protease,integrase,tail attL 466272:466289|attR 482267:482284
DBSCAN-SWA_2 1210855 : 1259999 63 Salmonella_phage(80.0%) portal,capsid,head,lysis,plate,tRNA,integrase,transposase,tail,coat attL 1209260:1209277|attR 1239533:1239550
DBSCAN-SWA_3 1366021 : 1431592 70 Salmonella_phage(31.48%) tail,transposase,terminase,holin NA
DBSCAN-SWA_4 1745361 : 1752266 6 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_5 1795611 : 1806635 9 Escherichia_phage(33.33%) transposase NA
DBSCAN-SWA_6 2798523 : 2809398 9 Escherichia_phage(85.71%) NA NA
DBSCAN-SWA_7 3002663 : 3073313 85 uncultured_Caudovirales_phage(32.69%) terminase,plate,head,lysis,transposase,tail NA
DBSCAN-SWA_8 3108561 : 3139605 43 Enterobacteria_phage(37.5%) integrase,transposase,holin attL 3108343:3108358|attR 3136911:3136926
DBSCAN-SWA_9 3267277 : 3396866 152 Klebsiella_phage(31.87%) terminase,portal,tRNA,capsid,head,holin,protease,integrase,tail attL 3294080:3294094|attR 3394677:3394691
DBSCAN-SWA_10 3612844 : 3705795 96 Salmonella_phage(56.9%) portal,tRNA,lysis,plate,head,capsid,protease,integrase,tail attL 3668370:3668388|attR 3705870:3705888
DBSCAN-SWA_11 4358219 : 4372280 15 Enterobacteria_phage(66.67%) transposase NA
DBSCAN-SWA_12 4840948 : 4850473 10 Enterobacteria_phage(83.33%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP034124
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 15236 : 47711 27 Salmonella_phage(25.0%) transposase,integrase NA
DBSCAN-SWA_2 192058 : 199487 7 Stx2-converting_phage(28.57%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP034126
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 552 : 14328 15 Escherichia_phage(20.0%) transposase,integrase attL 6963:7022|attR 10507:11327
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. CP034125
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1796 : 51111 56 Escherichia_phage(40.91%) protease,transposase NA
DBSCAN-SWA_2 68849 : 80008 11 Escherichia_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage