CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027729	Pseudomonas sp. R3-18-08 chromosome, complete genome	1 crisprs	csa3,DEDDh,DinG,cas3,PD-DExK	0	2	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027729_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027729_2

5183911-5184021

Orphan

Consensus_repeat	Method
GGGGTGCGCTCTAACCAACTGAGCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027729_2

>merge|CP027729|2|5183911-5184021|CRISPRCasFinder
GGGGTGCGCTCTAACCAACTGAGCTACAGACCCAATTTCGAGCTGCTAAGGCCGACCTCACCCTGCTCTTTACCACAAAGCATGGGGTGCGCTCTAACCAACTAAGCTACA

>CP027729|2|2|5183911-5184021|CRISPRCasFinder
GGGGTGCGCTCTAACCAACTGAGCTACA	GACCCAATTTCGAGCTGCTAAGGCCGACCTCACCCTGCTCTTTACCACAAAGCAT
GGGGTGCGCTCTAACCAACTAAGCTACA

Protein	Signature genes	Signature genes Name	Protein_function
CP027729.1\|AZF18210.1\|5178491_5179241_-\|Pantothenate-kinase-type-III,-CoaX-like	unknown	unknown	gnl\|CDD\|237350
CP027729.1\|AZF18208.1\|5176959_5177328_-\|Protein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|235587
CP027729.1\|AZF18204.1\|5174473_5174974_-\|LSU-ribosomal-protein-L10p-(P0)	unknown	unknown	gnl\|CDD\|234632
CP027729.1\|AZF18219.1\|5193288_5194251_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377540
CP027729.1\|AZF18205.1\|5175173_5175869_-\|LSU-ribosomal-protein-L1p-(L10Ae)	unknown	unknown	gnl\|CDD\|180071
CP027729.1\|AZF18214.1\|5188962_5190054_+\|Anhydro-N-acetylmuramic-acid-kinase	unknown	unknown	gnl\|CDD\|236579
CP027729.1\|AZF18213.1\|5187426_5188959_+\|Peptidase,-M23/M37-family	unknown	unknown	gnl\|CDD\|236946
CP027729.1\|AZF18218.1\|5192256_5193219_+\|Dioxygenase	unknown	unknown	gnl\|CDD\|224981
CP027729.1\|AZF18209.1\|5178037_5178484_-\|hypothetical-protein	unknown	unknown	unknown
CP027729.1\|AZF18212.1\|5186138_5187338_-\|Tyrosyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235645
CP027729.1\|AZF18211.1\|5179230_5180187_-\|Biotin-operon-repressor	unknown	unknown	gnl\|CDD\|237010
CP027729.1\|AZF18221.1\|5195147_5195486_+\|Bis(5'-nucleosyl)-tetraphosphatase-(asymmetrical)	unknown	unknown	gnl\|CDD\|238607
CP027729.1\|AZF18207.1\|5176416_5176896_-\|Transcription-antitermination-protein-NusG	unknown	unknown	gnl\|CDD\|180161
CP027729.1\|AZF18206.1\|5175868_5176300_-\|LSU-ribosomal-protein-L11p-(L12e)	unknown	unknown	gnl\|CDD\|234661
CP027729.1\|AZF18215.1\|5190129_5190480_-\|putative-iron-binding-protein-from-the-HesB/IscA/SufA-family	unknown	unknown	gnl\|CDD\|184186
CP027729.1\|AZF18217.1\|5191804_5192233_+\|Protoporphyrinogen-IX-oxidase	unknown	unknown	gnl\|CDD\|367596
CP027729.1\|AZF18203.1\|5174029_5174395_-\|LSU-ribosomal-protein-L7/L12-(P1/P2)	unknown	unknown	gnl\|CDD\|234671
CP027729.1\|AZF18202.1\|5169736_5173810_-\|DNA-directed-RNA-polymerase-beta-subunit	unknown	unknown	gnl\|CDD\|234749
CP027729.1\|AZF18220.1\|5194313_5195102_+\|Putative-short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|223377
CP027729.1\|AZF18216.1\|5190634_5191669_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761

Protein	Function_ID	Function_description	E-value
CP027729.1\|AZF18210.1\|5178491_5179241_-\|Pantothenate-kinase-type-III,-CoaX-like	gnl\|CDD\|237350	PRK13322, PRK13322, pantothenate kinase; Reviewed.	2.48464e-131
CP027729.1\|AZF18208.1\|5176959_5177328_-\|Protein-translocase-subunit-SecE	gnl\|CDD\|235587	PRK05740, secE, preprotein translocase subunit SecE; Reviewed.	1.32065e-36
CP027729.1\|AZF18204.1\|5174473_5174974_-\|LSU-ribosomal-protein-L10p-(P0)	gnl\|CDD\|234632	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed.	1.5439e-64
CP027729.1\|AZF18219.1\|5193288_5194251_+\|hypothetical-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	1.43625e-26
CP027729.1\|AZF18205.1\|5175173_5175869_-\|LSU-ribosomal-protein-L1p-(L10Ae)	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	1.06219e-135
CP027729.1\|AZF18214.1\|5188962_5190054_+\|Anhydro-N-acetylmuramic-acid-kinase	gnl\|CDD\|236579	PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed.	0
CP027729.1\|AZF18213.1\|5187426_5188959_+\|Peptidase,-M23/M37-family	gnl\|CDD\|236946	PRK11649, PRK11649, putative peptidase; Provisional.	1.93622e-64
CP027729.1\|AZF18218.1\|5192256_5193219_+\|Dioxygenase	gnl\|CDD\|224981	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only].	3.59958e-88
CP027729.1\|AZF18217.1\|5191804_5192233_+\|Protoporphyrinogen-IX-oxidase	gnl\|CDD\|367596	pfam03653, UPF0093, Uncharacterized protein family (UPF0093).	1.10808e-66
CP027729.1\|AZF18212.1\|5186138_5187338_-\|Tyrosyl-tRNA-synthetase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
CP027729.1\|AZF18211.1\|5179230_5180187_-\|Biotin-operon-repressor	gnl\|CDD\|237010	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA.	3.58159e-157
CP027729.1\|AZF18221.1\|5195147_5195486_+\|Bis(5'-nucleosyl)-tetraphosphatase-(asymmetrical)	gnl\|CDD\|238607	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.	4.01283e-61
CP027729.1\|AZF18207.1\|5176416_5176896_-\|Transcription-antitermination-protein-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	1.34278e-90
CP027729.1\|AZF18206.1\|5175868_5176300_-\|LSU-ribosomal-protein-L11p-(L12e)	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	5.27355e-93
CP027729.1\|AZF18215.1\|5190129_5190480_-\|putative-iron-binding-protein-from-the-HesB/IscA/SufA-family	gnl\|CDD\|184186	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional.	2.35112e-79
CP027729.1\|AZF18203.1\|5174029_5174395_-\|LSU-ribosomal-protein-L7/L12-(P1/P2)	gnl\|CDD\|234671	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.	4.13051e-42
CP027729.1\|AZF18202.1\|5169736_5173810_-\|DNA-directed-RNA-polymerase-beta-subunit	gnl\|CDD\|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
CP027729.1\|AZF18220.1\|5194313_5195102_+\|Putative-short-chain-dehydrogenase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	3.99388e-105
CP027729.1\|AZF18216.1\|5190634_5191669_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0

>CP027729.1|AZF18211.1|5179230_5180187_-|Biotin-operon-repressor
MLTLLELLKDGRFHSGEALGAALGVSRSAVWKQLQLLEAELNLPIHKVRGKGYQLASPLVFLNAEEITRTVPSLPWPIHIHDSIDSTNAEALRLVGAAQAAPVLVLAEQQTAGRGRRGRKWVSPFAQNIYYSLVLRIEDGLRQLEGLSLVVGLAVIQALRESGVQGPVLKWPNDVLVGQKKIAGILLELVGDPADICHVVVGIGINVNMQKAEVDQQWTSVQLETGSAADRNALVAQVSLQLQRYLDRHRESGFSALQEEWESNHAWQGRAVSLIAGVSRIDGVVLGVDRQGALRLSVDGVEKTYSGGELSLRLRDDS
>CP027729.1|AZF18210.1|5178491_5179241_-|Pantothenate-kinase-type-III,-CoaX-like
MILELDCGNSFIKWRVLGADRVAAVAEGVVGSNLALIESLNAVPDMSLTRCRLVSVRALEETNKLVETLVQAFGITVSCATSAAQMAGVRNGYDDFERLGLDRWLAILGGYKLASGACLVLDFGTAATADFIDADGEHLGGFICPGLPLMRNQLRTHTRKIRYDDAAAERALERLTPGRTTAEAVERGCTLMLRGFVLTQIELARSYWGDDFTVFLTGGDADLVFDAVPQARLVPDLVFIGLAMACPLL
>CP027729.1|AZF18209.1|5178037_5178484_-|hypothetical-protein
MRWLFLLLLILNVFYYIWHQQEAPLRAKDVTPLSLHRGSQQDIRLLSESSETMARRDRAKTPDTQNSCLYIGGFTDQRQAQAVEQRLTSLDIKVKVQLLNMPEASGYWLRVAPESRRLADDLPFENLAKEFNELKHKIMLCEGIATLE
>CP027729.1|AZF18208.1|5176959_5177328_-|Protein-translocase-subunit-SecE
MTPKAEAQSSRFDLFKWLAVVALVVVGVVGNQYYSASPILYRVLALLALAAVAAFVGLQTAKGKSFAVLVKEARTEIRKVVWPTRQETTQTTLIVVAVVLVMALLLWGLDSLLGWLVSLIVG
>CP027729.1|AZF18207.1|5176416_5176896_-|Transcription-antitermination-protein-NusG
MRSLLERVKLAGMEDGFGEILVPTEEVVEMRNGQKRKSERKFFPGYVLVQMDMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVEKV
>CP027729.1|AZF18206.1|5175868_5176300_-|LSU-ribosomal-protein-L11p-(L12e)
MAKKITAYIKLQVKAAQANPSPPVGPALGQHGVNIMEFCKAFNARTQGLEPGLPTPVIITVYSDRSFTFETKSTPASVLLKKAAGLTSGSARPNTVKVGTVTRAQLEEIAKTKNADLTAADMDAAVRTIAGSARSMGLNVEGV
>CP027729.1|AZF18205.1|5175173_5175869_-|LSU-ribosomal-protein-L1p-(L10Ae)
MAKLTKRQKAIAGKIEAGKAYNFVDAAALLTELSTVKFSESVDVAVNLGVDPRKSDQVVRSATVLPHGTGKTVRVAVFTQGPAAEAALAAGADRVGMDDLAAEMKGGDLNYDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVRYRTDKNGIIHTSVGKVGFDAVKLKENVEALIADLKRIKPASSKGIYVKRVTLSTTMGPGLVIDQGSLDV
>CP027729.1|AZF18204.1|5174473_5174974_-|LSU-ribosomal-protein-L10p-(P0)
MAINLEDKKAIVAEVNEAAKAALSAVVADARGVTVGAMTGLRKEAREAGVYVRVVRNTLLKRAVADTEYSVLNDVFTGPTLIAFSKDHPGAAARLFKEFAKSQDKFEIKAAAFEGKFLAANQIDVLATLPTRDEAISQLMSVIQGATSKLARTLAAVREQKEAAAA
>CP027729.1|AZF18203.1|5174029_5174395_-|LSU-ribosomal-protein-L7/L12-(P1/P2)
MSISQDDILNAVAEMSVLQVVELIKAFEEKFGVSAAAASAGPAVAAVAAEEQTEFNVMLLEAGEKKVNVIKAVRELTGLGLKEAKAVVDGAPAQVLEAVSKDAADKAKATLEEAGAKVELK
>CP027729.1|AZF18202.1|5169736_5173810_-|DNA-directed-RNA-polymerase-beta-subunit
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSVFPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKDETLKLELIASRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGLKELEVPLDYVLGRTTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFISDTLKIDSTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVKEGLVTDEIVFLSAIEEADHVIAQASATMNDKKVLIDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGYNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDEIRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEILDGLEHGQWFKLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKGLGEKINRMIEEQRKVADLRKFLHEIYNEIGGRNEELDTFTDQEILDLAKNLRGGVPMATPVFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
>CP027729.1|AZF18212.1|5186138_5187338_-|Tyrosyl-tRNA-synthetase
MKSVEEQLALIKRGAEELLVEAELVEKLKRGQPLRIKAGFDPTAPDLHLGHTVLINKLRQFQELGHQVIFLIGDFTGMIGDPSGKSATRPPLTREQVLDNAETYKTQVFKILDPAKTEVAFNSTWMDQMGPADFIRLTSQYTVARMLERDDFDKRYSTNQPIAIHEFLYPLVQGYDSVALRADVELGGTDQKFNLLMGRELQRAYGQEAQCILTMPLLEGLDGVKKMSKSLGNYVGIQEAPGVMYGKLVSIPDSLMWRYFELLSFRSMDEINALRADVEAGANPRDVKIKLAEEIVARFHGEEAAANAHRAAGNRMKDGELPDDLPEIELTAAEAMPIAAVLNKAGLVKNSAVARDLLGSGGVRIDGEVVDRTFIYELGATHVCQAGKKAFARITLKSE
>CP027729.1|AZF18213.1|5187426_5188959_+|Peptidase,-M23/M37-family
MRKPSVRELAPQMIWLYFIQLFHLHHVIHLFHFIFKVKIPMTTEPSKAPPLYPKTHLLAASGIAALLSLALLVFPSSDVEAKRTSLSLDLESPVEQLTQDQDASDEQQATNTPAESPFAQIENTPEETQEAAQEKPAAVAAKSPQHREVIVSKGDTLSTLFEKVGLPAATVNDVLATDKQAKQFTQLKHGQKLEFELTPDGQLNNLHTNINDLESISLSKGAKGFAFNRITTKPVMRSAYVHGVINSSLSQSAARAGLSHSMTMDMASVFGYDIDFAQDIRQGDEFDVIYEQKVANGKVVGTGNILSARFTNRGKTYTAVRYTNKQGNSSYYTADGNSMRKAFIRTPVDFARISSRFSMGRKHPILNKIRAHKGVDYAAPRGTPIKAAGDGKVLLAGRRGGYGNTVIIQHGNTYRTLYGHMQGFAKGVKTGGNVKQGQVIGYIGTTGLSTGPHLHYEFQVNGVHVDPLGQKLPMADPIAKAERARFMQQSQPLMARMDQERSTLLASAKR
>CP027729.1|AZF18214.1|5188962_5190054_+|Anhydro-N-acetylmuramic-acid-kinase
MPRYIGVMSGTSLDGLDIALIEQDSAISLIATHYIPMPAPLRAELLSLCASGPDEIARSAIAQQSWVTLAAQGIHTLLAQQNLTAQDIRAIGSHGQTIRHEPARGFTVQIGNPALLTELTGITVVSDFRSRDVAAGGQGAPLVPAFHEALFGESTGNRAVLNVGGFSNLSLIETGKPVSGFDCGPGNVLLDAWIHHQRGEHFDRDGQWAASGKVQPQLLNTLLSDPFFATKGPKSTGREVFNLRWLQQHLDGLPAFLPEDVQATLLELTSLTIVESLQSAQPQTETLLICGGGAHNGTLMKRLAALLPSTQVSSTALYGVDPDWVEAMAFAWLAHCCLEGIAANRPSVTGARGLRVLGAIYPA
>CP027729.1|AZF18215.1|5190129_5190480_-|putative-iron-binding-protein-from-the-HesB/IscA/SufA-family
MSVESFTPTALQFTHGAAHKVKSLVDEEGNDRLKLRVFVTGGGCSGFQYGFTFDEDVADDDTIVEREGVSLVVDPMSFQYLAGAEVDYQEGLEGSRFVIKNPNATTTCGCGSSFSI
>CP027729.1|AZF18216.1|5190634_5191669_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MVKVGIVGGTGYTGVELLRLLAQHPQAEVVVITSRSEAGLAVADMYPNLRGHYDGLAFSVPDIKTLGACDVVFFATPHGVAHALAGELLAAGTKVIDLSADFRLQDADEWAKWYGQPHGAPELLEAAVYGLPEVNREQIKQARLIAVPGCYPTATQLGFLPLLEAGLADASRLIADCKSGVSGAGRGAAVGSLYSETSESMKAYAVKGHRHLPEIRQGLRRAAGKDVGLTFVPHLTPMIRGIHSTLYATVVDRSVDLQALFEKRYANEPFVDVMPAGSHPETRSVRGANVCRIAVHRPQDGDLVVVLSVIDNLVKGASGQAVQNMNILFGLDEKLGLSHAGMLP
>CP027729.1|AZF18217.1|5191804_5192233_+|Protoporphyrinogen-IX-oxidase
MLYLWVKAFHIVSIVCWFAGLFYLPRLFVYHAQSEDTVSKERFSVMERKLYRGIMGPAMVATLVFGIWLLVLNPGIFQSGAWIHAKLTLVVLLIGYHHMCGAQVKRFARGENTRSHVFYRWFNEVPVLILLAVVILVVVKPF
>CP027729.1|AZF18218.1|5192256_5193219_+|Dioxygenase
MSLPALLEQRLRLPVVAAPMFLISNPQLVLACCRNGVVGSFPALNQRESSGFRAWLEEIEAGLALLDNPAPYAVNLIVHNSNPRLAADLAICVEHKVPIVITSLGAVKELVDAVHSYGGLVFHDVTTRRHAEKAAEAGVDGLIAVAAGAGGHAGTWSPFALIAEIRQFFDKTLLLAGCLNHGREILAAQVLGADLAYFGTRFIGTTESHAPDAYKEMLLTARAADIVHTPAVSGVPASFMRQSLENAGFDLAALQGKGEVNLGSKLKPLSDEAKAWKTVWSAGQGVGEINDLPSVDELVVRLDAQYRQARENAAQLRWPR
>CP027729.1|AZF18219.1|5193288_5194251_+|hypothetical-protein
MSDSRFKIVFDGALRPGVESTTAKLNLAELFKSDVEAIEKLFTGRPVALKRDLSRADADTYLTALQNAGVEARIEAEQPVAFSLAETHETGASASDFSHTAASPYAPPRAAVGDNLPEYATLKVFTIHGRIGRLRYLAWTLALTVAMLVAAGIISTVGFAVATASPTIAIILGSLLGFALFVALVVVSVQIGVQRLHDLGWSGWLYLLNLVPLVNSVFPLLLLVLPGNTGANQYGAPPPRNSTAVKILASLWLAFIPLMLIVVVTLGMNGYLDQLEANMGSSYESSSLSTDEDADQSVIGDEDAAQSADDAAEPVDSPEQ
>CP027729.1|AZF18220.1|5194313_5195102_+|Putative-short-chain-dehydrogenase
MTRYALITGASSGIGLALAEALARRGRSLILVARQRDQLESIAIELTQRFGVEVLFRACDLGEPLRLSGFLLELEEGERQIDLLVNCAGIGTSGPFLAQDWMTEQDLIEVNILALTRMCHALGNAMALHGGGQILNVASVAAFQPGPWMSSYYASKAYVLHFSEGLREELKTCGIKVSVLCPGPTRTAFFGTAQMDTAKLDRSQQLMSPEEVALYTVRALEKNKAIIIPGRRNRWLAFSPRLSPRWLTRKIAGAINKAYCPR
>CP027729.1|AZF18221.1|5195147_5195486_+|Bis(5'-nucleosyl)-tetraphosphatase-(asymmetrical)
MDTLFTKIINREIPANIIYEDDQVLAFHDIAPQAPVHFLVIPKKPIRTLNDLTEDDKALAGHILFTAQRLAVELGCEKGFRVVMNCNEDGGQTVYHIHMHVLGQRQMNWPPG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027729_1	1.2\|2334937\|37\|CP027729\|CRISPRCasFinder	2334937-2334973	37	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	505688-505724	5	0.865
CP027729_1	1.2\|2334937\|37\|CP027729\|CRISPRCasFinder	2334937-2334973	37	NZ_CP028919	Gemmobacter sp. HYN0069 plasmid unnamed1, complete sequence	197424-197460	5	0.865
CP027729_1	1.4\|2335069\|31\|CP027729\|CRISPRCasFinder	2335069-2335099	31	NZ_CP022681	Streptococcus respiraculi strain HTS25 plasmid unnamed1, complete sequence	22027-22057	8	0.742
CP027729_1	1.4\|2335069\|31\|CP027729\|CRISPRCasFinder	2335069-2335099	31	NZ_CP011616	Klebsiella oxytoca strain CAV1335 plasmid pCAV1335-118, complete sequence	116193-116223	8	0.742
CP027729_1	1.4\|2335069\|31\|CP027729\|CRISPRCasFinder	2335069-2335099	31	NZ_CP017931	Klebsiella oxytoca strain CAV1015 plasmid pCAV1015-111, complete sequence	56118-56148	8	0.742
CP027729_1	1.4\|2335069\|31\|CP027729\|CRISPRCasFinder	2335069-2335099	31	NZ_CP011594	Klebsiella oxytoca strain CAV1099 plasmid pCAV1099-111, complete sequence	104889-104919	8	0.742
CP027729_1	1.4\|2335069\|31\|CP027729\|CRISPRCasFinder	2335069-2335099	31	NZ_CP018360	Klebsiella oxytoca strain CAV1752 plasmid pCAV1752-111, complete sequence	77702-77732	8	0.742

1. spacer 1.2|2334937|37|CP027729|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 5, identity: 0.865

agaggcgcgctcgggatcattcctgaagttgccgccg	CRISPR spacer
ggccgcgcgctccggatcattcttgaagttgccgccg	Protospacer
.*  ******** *********.**************

2. spacer 1.2|2334937|37|CP027729|CRISPRCasFinder matches to NZ_CP028919 (Gemmobacter sp. HYN0069 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.865

agaggcgcgctcgggatcattcctgaagttgccgccg	CRISPR spacer
agccgcacgctcgggatcattcttgaagttgccgccc	Protospacer
**  **.***************.*************

3. spacer 1.4|2335069|31|CP027729|CRISPRCasFinder matches to NZ_CP022681 (Streptococcus respiraculi strain HTS25 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

ttgataaaactctttatcatgagaagcagac	CRISPR spacer
atgagaaaactcgttatcatgagattgtgtc	Protospacer
 *** ******* ***********    * *

4. spacer 1.4|2335069|31|CP027729|CRISPRCasFinder matches to NZ_CP011616 (Klebsiella oxytoca strain CAV1335 plasmid pCAV1335-118, complete sequence) position: , mismatch: 8, identity: 0.742

ttgataaaactctttatcatgagaagcagac	CRISPR spacer
ttgataaaacacttcatcatgaggtccgtat	Protospacer
********** ***.********.  *. *.

5. spacer 1.4|2335069|31|CP027729|CRISPRCasFinder matches to NZ_CP017931 (Klebsiella oxytoca strain CAV1015 plasmid pCAV1015-111, complete sequence) position: , mismatch: 8, identity: 0.742

ttgataaaactctttatcatgagaagcagac	CRISPR spacer
ttgataaaacacttcatcatgaggtccgtat	Protospacer
********** ***.********.  *. *.

6. spacer 1.4|2335069|31|CP027729|CRISPRCasFinder matches to NZ_CP011594 (Klebsiella oxytoca strain CAV1099 plasmid pCAV1099-111, complete sequence) position: , mismatch: 8, identity: 0.742

ttgataaaactctttatcatgagaagcagac	CRISPR spacer
ttgataaaacacttcatcatgaggtccgtat	Protospacer
********** ***.********.  *. *.

7. spacer 1.4|2335069|31|CP027729|CRISPRCasFinder matches to NZ_CP018360 (Klebsiella oxytoca strain CAV1752 plasmid pCAV1752-111, complete sequence) position: , mismatch: 8, identity: 0.742

ttgataaaactctttatcatgagaagcagac	CRISPR spacer
ttgataaaacacttcatcatgaggtccgtat	Protospacer
********** ***.********.  *. *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

386526 : 417432

Pseudomonas_phage(72.41%)

capsid,head,tail,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF13843.1\|386526_387675_-	Mobile element protein	V9IQN0	Stenotrophomonas_phage	4.1e-72	40.5
AZF13844.1\|387671_387884_-	hypothetical protein	NA	NA	NA	NA
AZF13845.1\|388207_388450_-	hypothetical protein	NA	NA	NA	NA
AZF13846.1\|388442_389138_-	Phage protein	M1PKJ5	Streptococcus_phage	7.0e-19	36.7
AZF13847.1\|389134_389398_-	hypothetical protein	NA	NA	NA	NA
AZF13848.1\|389457_389775_-	hypothetical protein	NA	NA	NA	NA
AZF13849.1\|389822_390635_-	hypothetical protein	A0A2H4J936	uncultured_Caudovirales_phage	3.9e-21	30.6
AZF13850.1\|390661_393355_-	Phage protein	A0A2H4J936	uncultured_Caudovirales_phage	7.8e-300	55.2
AZF13851.1\|393351_393591_-	hypothetical protein	NA	NA	NA	NA
AZF13852.1\|393666_394032_-	hypothetical protein	NA	NA	NA	NA
AZF13853.1\|394028_394538_-	Phage protein	A0A2H4JG61	uncultured_Caudovirales_phage	7.4e-42	55.0
AZF13854.1\|394537_394741_-	hypothetical protein	A0A2H4JE67	uncultured_Caudovirales_phage	3.0e-10	54.0
AZF13855.1\|394815_395178_+	hypothetical protein	A0A2H4JFL3	uncultured_Caudovirales_phage	8.4e-16	41.0
AZF13856.1\|395280_395457_+	hypothetical protein	NA	NA	NA	NA
AZF13857.1\|395854_396610_-\|capsid	Phage-related capsid packaging protein	A0A0U4B0L9	Pseudomonas_phage	5.5e-102	76.6
AZF13858.1\|396644_398711_-\|terminase	Phage terminase, ATPase subunit	A0A0U4JIZ9	Pseudomonas_phage	1.0e-267	68.6
AZF13859.1\|398874_399792_+\|capsid	Phage capsid scaffolding protein	A0A0U4JVV6	Pseudomonas_phage	4.3e-56	57.6
AZF13860.1\|399793_400816_+\|capsid	Phage capsid protein	A0A0U4K5I9	Pseudomonas_phage	3.3e-126	67.6
AZF13861.1\|400812_401541_+\|terminase	putative terminase, endonuclease subunit	A0A0U4JEJ1	Pseudomonas_phage	1.1e-70	61.9
AZF13862.1\|401638_402109_+\|head	putative head completion/stabilization protein	A0A0U4J933	Pseudomonas_phage	6.0e-38	57.7
AZF13863.1\|402105_402555_+	hypothetical protein	A0A0U4IBS7	Pseudomonas_phage	1.1e-46	63.9
AZF13864.1\|402544_403225_+	hypothetical protein	A0A0U4ISN1	Pseudomonas_phage	1.6e-63	60.6
AZF13865.1\|403236_404358_+	Phage protein	A0A0U4KLE6	Pseudomonas_phage	2.0e-140	68.4
AZF13866.1\|404364_404814_+	hypothetical protein	A0A0U3TH58	Pseudomonas_phage	2.4e-60	75.7
AZF13867.1\|404813_405032_+	putative Zinc-finger containing protein	A0A0U4IIN4	Pseudomonas_phage	6.8e-13	58.5
AZF13868.1\|405028_405235_+	hypothetical protein	NA	NA	NA	NA
AZF13869.1\|405231_405765_+	putative phage lysozyme	NA	NA	NA	NA
AZF13870.1\|405764_406217_+	Endopeptidase	A0A0U4JXC2	Pseudomonas_phage	1.4e-28	52.1
AZF13871.1\|406252_406540_+	hypothetical protein	A0A0U4B0P2	Pseudomonas_phage	3.4e-28	67.4
AZF13872.1\|406563_406704_+	hypothetical protein	A0A0U4B0S4	Pseudomonas_phage	9.4e-16	82.6
AZF13873.1\|406710_409023_+\|tail	Phage-related tail protein	A0A0U4IJ81	Pseudomonas_phage	7.5e-150	42.9
AZF13874.1\|409019_409337_+	hypothetical protein	A0A0U4B0N5	Pseudomonas_phage	3.2e-35	78.4
AZF13875.1\|409333_410506_+	Phage protein	A0A0U4JJ14	Pseudomonas_phage	1.4e-165	74.0
AZF13876.1\|410502_411027_+	hypothetical protein	A0A0U4JVX3	Pseudomonas_phage	2.6e-82	81.0
AZF13877.1\|411036_413673_+\|tail	Phage tail fiber protein	A0A0U4K5K2	Pseudomonas_phage	2.9e-105	64.9
AZF13878.1\|413834_414314_+	hypothetical protein	NA	NA	NA	NA
AZF13879.1\|414336_415239_+	hypothetical protein	NA	NA	NA	NA
AZF13880.1\|415235_415787_+	hypothetical protein	A0A0U4J942	Pseudomonas_phage	1.4e-54	63.5
AZF13881.1\|415783_416488_+	hypothetical protein	A0A1D9CA29	Salinivibrio_phage	1.1e-40	38.3
AZF13882.1\|416460_417432_+	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	7.1e-126	68.9

DBSCAN-SWA_2

1305691 : 1345991

uncultured_Caudovirales_phage(33.33%)

plate,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF14664.1\|1305691_1306162_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
AZF14665.1\|1306301_1307345_-	Ferric iron ABC transporter, ATP-binding protein	Q6GZ03	Mycoplasma_phage	3.3e-20	37.1
AZF14666.1\|1307341_1308265_-	Ornithine carbamoyltransferase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	1.2e-18	27.4
AZF14667.1\|1308694_1310803_+	Formate dehydrogenase-O, major subunit	NA	NA	NA	NA
AZF14668.1\|1310902_1311241_+	Glutaredoxin-related protein	NA	NA	NA	NA
AZF14669.1\|1311430_1311901_-	Bacterioferritin	NA	NA	NA	NA
AZF14670.1\|1312101_1312320_-	Bacterioferritin-associated ferredoxin	NA	NA	NA	NA
AZF14671.1\|1312565_1313168_+	Alkyl hydroperoxide reductase subunit C-like protein	NA	NA	NA	NA
AZF14672.1\|1313232_1313907_-	Ribonuclease T	NA	NA	NA	NA
AZF14673.1\|1313903_1314950_-	Dihydroorotase	NA	NA	NA	NA
AZF14674.1\|1315106_1316015_+	Sodium-type flagellar protein motY precursor	NA	NA	NA	NA
AZF14675.1\|1316144_1317362_+	Argininosuccinate synthase	NA	NA	NA	NA
AZF14676.1\|1317656_1317770_+	hypothetical protein	NA	NA	NA	NA
AZF14677.1\|1317989_1318622_+	Two-component transcriptional response regulator, LuxR family	NA	NA	NA	NA
AZF14678.1\|1318709_1318892_-	hypothetical protein	NA	NA	NA	NA
AZF14679.1\|1318998_1319637_-	Endonuclease III	NA	NA	NA	NA
AZF14680.1\|1319706_1320681_-	Electron transport complex protein RnfB	NA	NA	NA	NA
AZF14681.1\|1320764_1322816_-\|tRNA	Methionyl-tRNA synthetase	NA	NA	NA	NA
AZF14682.1\|1322988_1324083_+	[4Fe-4S] cluster assembly scaffold protein Mrp (ApbC)	NA	NA	NA	NA
AZF14683.1\|1324538_1324862_-	4Fe-4S dicluster domain	NA	NA	NA	NA
AZF14684.1\|1325004_1327596_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	2.1e-28	21.5
AZF14685.1\|1327779_1328151_-	hypothetical protein	NA	NA	NA	NA
AZF14686.1\|1328143_1328632_-	GepA protein	D0UIM3	Aggregatibacter_phage	6.4e-27	44.5
AZF14687.1\|1328894_1329629_+	Transcriptional regulator	B5TK58	Pseudomonas_phage	8.3e-119	87.3
AZF14688.1\|1329672_1331004_-	Transposase	NA	NA	NA	NA
AZF14689.1\|1331069_1331195_-	hypothetical protein	NA	NA	NA	NA
AZF14690.1\|1331250_1331370_+	hypothetical protein	NA	NA	NA	NA
AZF14691.1\|1331653_1331992_+	Holin	B5TK61	Pseudomonas_phage	2.8e-45	81.8
AZF14692.1\|1332008_1332524_+	hypothetical protein	NA	NA	NA	NA
AZF14693.1\|1332527_1333136_+\|plate	Baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	6.5e-45	52.3
AZF14694.1\|1333148_1333481_+\|plate	Baseplate assembly protein W	A0A2H4JI46	uncultured_Caudovirales_phage	1.0e-36	69.1
AZF14695.1\|1333477_1334473_+\|plate	Phage-related baseplate assembly protein	A0A2H4JC04	uncultured_Caudovirales_phage	1.2e-112	64.4
AZF14696.1\|1334469_1335108_+\|tail	Phage tail fiber	A0A2H4JDK0	uncultured_Caudovirales_phage	2.5e-39	52.5
AZF14697.1\|1335104_1335635_+\|tail	Phage tail fiber protein	B0ZSG1	Halomonas_phage	1.2e-47	55.6
AZF14698.1\|1335688_1336441_+	hypothetical protein	NA	NA	NA	NA
AZF14699.1\|1336450_1336687_+	hypothetical protein	NA	NA	NA	NA
AZF14700.1\|1336775_1336949_+	hypothetical protein	NA	NA	NA	NA
AZF14701.1\|1336951_1338118_+\|tail	Major tail sheath protein	B0ZSG8	Halomonas_phage	1.2e-124	57.0
AZF14702.1\|1338117_1338624_+	hypothetical protein	Q6R4W3	Vibrio_virus	3.8e-22	35.1
AZF14703.1\|1338676_1339258_+	hypothetical protein	B0ZSH0	Halomonas_phage	1.0e-26	38.3
AZF14704.1\|1339254_1339380_+	hypothetical protein	NA	NA	NA	NA
AZF14705.1\|1339386_1339503_+	hypothetical protein	NA	NA	NA	NA
AZF14706.1\|1339553_1341605_+\|tail	Phage tail length tape-measure protein	NA	NA	NA	NA
AZF14707.1\|1341604_1341988_+\|tail	Unclassified tail protein	B0ZSH2	Halomonas_phage	6.8e-32	55.9
AZF14708.1\|1341980_1342193_+\|tail	P2-like prophage tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	1.2e-17	64.3
AZF14709.1\|1342202_1343204_+\|tail	Phage tail protein D	A0A2H4JH05	uncultured_Caudovirales_phage	3.4e-99	54.8
AZF14710.1\|1343227_1343785_+	Lytic enzyme	B5TK83	Pseudomonas_phage	1.8e-73	71.0
AZF14711.1\|1343772_1344267_+	hypothetical protein	A0A2H4IZW4	uncultured_Caudovirales_phage	2.5e-34	58.1
AZF14712.1\|1344348_1344849_+	Nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	9.7e-71	83.7
AZF14713.1\|1344932_1345991_+	RecA protein	A0A0S2MVG1	Bacillus_phage	2.4e-111	62.4

DBSCAN-SWA_3

1449818 : 1454782

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF14814.1\|1449818_1450568_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.1e-61	49.4
AZF14815.1\|1450567_1451245_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.1e-43	53.1
AZF14816.1\|1451455_1452292_+	Murein hydrolase activator NlpD	A0A0S2SXL7	Bacillus_phage	8.2e-06	33.3
AZF14817.1\|1452397_1453405_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.3e-34	36.2
AZF14818.1\|1453618_1453828_-	Cold shock protein of CSP family	Q9AZD3	Lactococcus_phage	2.2e-16	66.7
AZF14819.1\|1454215_1454782_+	Deoxycytidine triphosphate deaminase	S5VM63	Pseudomonas_phage	6.2e-74	73.3

DBSCAN-SWA_4

3457834 : 3467835

uncultured_Caudovirales_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF16642.1\|3457834_3458659_-\|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	A0A0U2S5Z2	Escherichia_phage	2.0e-105	71.6
AZF16643.1\|3458954_3459557_+	Inner membrane protein YohC	NA	NA	NA	NA
AZF16644.1\|3459685_3460180_+	Protein SprT	NA	NA	NA	NA
AZF16645.1\|3460273_3461449_-	Alpha-methylacyl-CoA racemase	NA	NA	NA	NA
AZF16646.1\|3461608_3462001_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	3.4e-55	82.9
AZF16647.1\|3462002_3462353_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	5.2e-39	71.1
AZF16648.1\|3462352_3462631_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.9e-24	57.6
AZF16649.1\|3462627_3462963_+\|tRNA	tRNA 2-thiouridine synthesis protein TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	1.5e-43	73.0
AZF16650.1\|3462959_3463961_+	Anthranilate phosphoribosyltransferase like	A0A2H4JBY5	uncultured_Caudovirales_phage	1.6e-168	86.3
AZF16651.1\|3464049_3465045_+	Glutathione S-transferase, omega	NA	NA	NA	NA
AZF16652.1\|3465159_3466554_-	Precorrin-2 oxidase	NA	NA	NA	NA
AZF16653.1\|3466554_3467835_-\|tRNA	Seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	53.3

DBSCAN-SWA_5

5407029 : 5417862

Mannheimia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF18417.1\|5407029_5407269_-	hypothetical protein	B5TK57	Pseudomonas_phage	1.2e-10	54.5
AZF18418.1\|5407778_5408057_+	HigB toxin protein	A0A0M3LQB1	Mannheimia_phage	9.3e-15	39.1
AZF18419.1\|5408071_5408359_+	Antitoxin HigA	A0A0M3LPV0	Mannheimia_phage	1.9e-18	50.6
AZF18420.1\|5408488_5408944_-	chemotaxis protein, putative	NA	NA	NA	NA
AZF18421.1\|5408936_5414750_-	Signal transduction histidine kinase CheA	W8CYM9	Bacillus_phage	2.8e-12	36.9
AZF18422.1\|5414768_5414897_-	hypothetical protein	NA	NA	NA	NA
AZF18423.1\|5414911_5416963_-	Methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.1e-18	40.5
AZF18424.1\|5416959_5417484_-	type IV pili signal transduction protein PilI	Q56AR1	Bacillus_thuringiensis_phage	2.6e-05	35.6
AZF18425.1\|5417496_5417862_-	twitching motility protein PilH	W8CYM9	Bacillus_phage	4.4e-12	34.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage