CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027722	Pseudomonas chlororaphis subsp. aureofaciens strain C50 chromosome, complete genome	3 crisprs	DinG,csa3,cas3,RT,PD-DExK,DEDDh,WYL	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027722_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027722_1

427300-427402

Orphan

Consensus_repeat	Method
GCGCCGGGCCCGGTGTAAAGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027722_1

>merge|CP027722|1|427300-427402|CRISPRCasFinder
GCGCCGGGCCCGGTGTAAAGAGGGGAAGCCCCGGCCTGCCTGTACCAAGGTTCCCAAAAGCGTGAGGGCCGCGCTGATCGCGCTGGGCCCGGTGTAAAGAGGG

>CP027722|1|1|427300-427402|CRISPRCasFinder
GCGCCGGGCCCGGTGTAAAGAGGG	GAAGCCCCGGCCTGCCTGTACCAAGGTTCCCAAAAGCGTGAGGGCCGCGCTGATC
GCGCTGGGCCCGGTGTAAAGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP027722.1\|AZE02584.1\|432711_433227_-\|DNA-directed-RNA-polymerase,-beta-subunit	unknown	unknown	gnl\|CDD\|379230
CP027722.1\|AZE02570.1\|419546_420305_-\|Putative-periplasmic-protein-YibQ	unknown	unknown	gnl\|CDD\|377404
CP027722.1\|AZE02571.1\|420468_421779_-\|Carboxyl-terminal-protease	unknown	unknown	gnl\|CDD\|223864
CP027722.1\|AZE02583.1\|431624_432740_+\|Methylphosphotriester-DNA--protein-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|225080
CP027722.1\|AZE02576.1\|425639_426122_+\|Protein-export-protein-SecB-(maintains-pre-export-unfolded-state)	unknown	unknown	gnl\|CDD\|180234
CP027722.1\|AZE02569.1\|418718_419474_+\|ABC-type-amino-acid-transport/signal-transduction-system,-periplasmic-component/domain	unknown	unknown	gnl\|CDD\|223904
CP027722.1\|AZE02572.1\|421810_423097_-\|Murein-hydrolase-activator-EnvC	unknown	unknown	gnl\|CDD\|227278
CP027722.1\|AZE02578.1\|426861_427236_+\|hypothetical-protein	unknown	unknown	unknown
CP027722.1\|AZE02577.1\|426341_426797_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223297
CP027722.1\|AZE02581.1\|431122_431332_-\|putative-MFS-type-transporter	unknown	unknown	unknown
CP027722.1\|AZE02587.1\|436139_437546_-\|Glutamine-synthetase-type-I	unknown	unknown	gnl\|CDD\|181884
CP027722.1\|AZE02585.1\|433315_433858_-\|Periplasmic-chorismate-mutase-I-precursor	unknown	unknown	gnl\|CDD\|236441
CP027722.1\|AZE02582.1\|431339_431483_+\|Acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|181242
CP027722.1\|AZE02580.1\|429678_430764_-\|Nitrogen-regulation-protein-NtrB	unknown	unknown	gnl\|CDD\|226370
CP027722.1\|AZE02579.1\|428245_429682_-\|Nitrogen-regulation-protein-NtrC	unknown	unknown	gnl\|CDD\|273818
CP027722.1\|AZE02573.1\|423233_424763_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
CP027722.1\|AZE02588.1\|437876_439331_+\|tRNA-4-thiouridine-synthase	unknown	unknown	gnl\|CDD\|234932
CP027722.1\|AZE02586.1\|433944_435978_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225405
CP027722.1\|AZE02575.1\|425329_425584_+\|Glutaredoxin-3-(Grx3)	unknown	unknown	gnl\|CDD\|274017
CP027722.1\|AZE02574.1\|424914_425328_+\|Rhodanese-related-sulfurtransferase-YibN	unknown	unknown	gnl\|CDD\|238089

Protein	Function_ID	Function_description	E-value
CP027722.1\|AZE02584.1\|432711_433227_-\|DNA-directed-RNA-polymerase,-beta-subunit	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	1.76821e-11
CP027722.1\|AZE02570.1\|419546_420305_-\|Putative-periplasmic-protein-YibQ	gnl\|CDD\|377404	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).	1.37774e-91
CP027722.1\|AZE02571.1\|420468_421779_-\|Carboxyl-terminal-protease	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.95839e-143
CP027722.1\|AZE02583.1\|431624_432740_+\|Methylphosphotriester-DNA--protein-cysteine-S-methyltransferase	gnl\|CDD\|225080	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism].	8.06866e-81
CP027722.1\|AZE02576.1\|425639_426122_+\|Protein-export-protein-SecB-(maintains-pre-export-unfolded-state)	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	4.26189e-83
CP027722.1\|AZE02569.1\|418718_419474_+\|ABC-type-amino-acid-transport/signal-transduction-system,-periplasmic-component/domain	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	1.9669e-23
CP027722.1\|AZE02572.1\|421810_423097_-\|Murein-hydrolase-activator-EnvC	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	6.03157e-100
CP027722.1\|AZE02588.1\|437876_439331_+\|tRNA-4-thiouridine-synthase	gnl\|CDD\|234932	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional.	0
CP027722.1\|AZE02580.1\|429678_430764_-\|Nitrogen-regulation-protein-NtrB	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	1.36849e-164
CP027722.1\|AZE02587.1\|436139_437546_-\|Glutamine-synthetase-type-I	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
CP027722.1\|AZE02585.1\|433315_433858_-\|Periplasmic-chorismate-mutase-I-precursor	gnl\|CDD\|236441	PRK09269, PRK09269, chorismate mutase; Provisional.	1.52192e-61
CP027722.1\|AZE02582.1\|431339_431483_+\|Acetyl-CoA-acetyltransferase	gnl\|CDD\|181242	PRK08131, PRK08131, 3-oxoadipyl-CoA thiolase.	1.90531e-07
CP027722.1\|AZE02577.1\|426341_426797_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	3.22205e-89
CP027722.1\|AZE02573.1\|423233_424763_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
CP027722.1\|AZE02586.1\|433944_435978_-\|hypothetical-protein	gnl\|CDD\|225405	COG2849, COG2849, Uncharacterized protein conserved in bacteria [Function unknown].	9.46318e-11
CP027722.1\|AZE02575.1\|425329_425584_+\|Glutaredoxin-3-(Grx3)	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	1.27223e-49
CP027722.1\|AZE02574.1\|424914_425328_+\|Rhodanese-related-sulfurtransferase-YibN	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	6.79697e-24
CP027722.1\|AZE02579.1\|428245_429682_-\|Nitrogen-regulation-protein-NtrC	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0

>CP027722.1|AZE02578.1|426861_427236_+|hypothetical-protein
MLRVFGSLAIFGVMVGLMIGRLTTPDPTELQEVQVQPNALVVWFNNEPKVHGEHIDGAVALLFEAEGRAQKGQLKINDKDANWRVRTTEEGLLLNVVAARALHGEWSGSEVDGRWRLELQLREE
>CP027722.1|AZE02577.1|426341_426797_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRHADLASCLESLGHPRLFAFTTKGSRPFHDASFTEGDAFLFGPESRGLPAEVLDALPAEQRLRLPMREGCRSLNLSNTVAVAVYEAWRQLGFK
>CP027722.1|AZE02576.1|425639_426122_+|Protein-export-protein-SecB-(maintains-pre-export-unfolded-state)
MTDQQNTAATEDESAPQFSLQRIYVRDLSFEAPKSPAIFRQQWEPSVGLDLNTRQKALEEGFHEVVLTLSVTVKNGEEVAFIAEVQQAGIFLIKNLDDASMSHTLGAFCPNILFPYAREALDSLVTRGSFPALMLAPVNFDALYAQELQRLQAAGEGTVQ
>CP027722.1|AZE02575.1|425329_425584_+|Glutaredoxin-3-(Grx3)
MAAVVVYSSDYCPYCSRAKYLLENKGVAFEEIKVDGKPQVRAEMAQKAGRTSVPQIWIGSTHVGGCDDLFALERAGKLDALLAA
>CP027722.1|AZE02574.1|424914_425328_+|Rhodanese-related-sulfurtransferase-YibN
MVAHLIQFATEHYLLVGAFVILLALLIAHELSRGGRSLSTRELTALVNSEQGVVIDIRPSKDFAAGHIVGALNIPQDKLAARVGELEKHKAKTIILVDALGQHAGTHARELMKSGFTAAKLSGGVGSWKADNLPLVK
>CP027722.1|AZE02573.1|423233_424763_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MTTTPKPLVLMILDGFGHSESHESNAIYAAKKPVLDRLYASVPNGLISGSGMDVGLPDGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFENPTICAAVDKAVAADKAVHILGLLSDGGVHSHQDHLVAMAELAFKRGAEKIYLHAFLDGRDTPPKSATSSIELLDETFKTLGKGRIASLIGRYFAMDRDNRWDRVAQAYNLIVDGNGEFNAATAQEGLQAAYERGESDEFVKATTLGEPVKVEDGDAVVFMNFRADRARELSRVFVEDGFKEFERARQPKLAGFVMLTQYAASIPAPSAFAPGSLENVLGDYLAKNGKTQLRIAETEKYAHVTFFFSGGREEPFPGEERILIPSPKVATYDLQPEMSAPEVTDRIVDAIENQRYDVIVVNYANGDMVGHSGVFDAAVKAVECLDLCVGRIVDALEKVGGEALITADHGNVEQMSDAATGQAHTAHTSEPVPFIYVGKRNLKVREGGVLADVAPTMLKLLGLPQPAEMTGTSILV
>CP027722.1|AZE02572.1|421810_423097_-|Murein-hydrolase-activator-EnvC
MLRALITLALICLLQPAFADERAQTQQQLDATRQDIAELKKLLGKLQEEKSGVQKDLRGTETEMGKLEKQVDALQKELKKSESELQRLDEEKKKLQSARIEQQRLIAIQARAAYQNGRQEYLKLLLNQQNPEKFARTLTYYDYLSQARLEQLKNFNETLRQLANVEKEISLQQAQLLVQKSSLDTQREELDKVRKERQVALAKLNDDVKARGDKLKAREQDQADLGKVLKTIEETLARQAREAEQARQKALIAQQEAEKKRLREAQASADDSPRKPPRAAPGPLVSSAGASYGGPFASSRGKLPWPVDGRLLARFGESRGDDARTKWDGVMISASAGSQVHAVHGGRVVFADWLRGAGLLVILDHGNGYLSLYGHNQTLLKEAGDVVKAGESISTVGSSGGQGAPALYFAIRQQGRPSDPAQWCRAQG
>CP027722.1|AZE02571.1|420468_421779_-|Carboxyl-terminal-protease
MLHLSRLTSLALTIALVIGAPLAFAAETAQSTAATTTKAPLPLEELRTFAEVMDRIKAAYVEPVDDKTLLENAIKGMLSNLDPHSAYLGPEDFAELQESTSGEFGGLGIEVGAEDGIIKVVSPIDDTPASKAGIQAGDLIVKINGQPTRGQSMTEAVDKMRGKIGQKITLTLVRDGGAPFDVTLARATIQVKSVKSQLLESGYGYIRITQFQVKTGEEVSKALAKLRKDNGKKLNGIILDLRNNPGGVLQSAVEVVDHFITKGLIVYTKGRIANSELRFSATGKDESEAVPMVVLINGGSASASEIVAGALQDQKRAVLMGTTSFGKGSVQTVLPLNNDRALKITTALYFTPNGRSIQAQGIVPDIEVRRAKITNEAQDNEYFKEADLQGHLGNGNGGADKPTASGSKPKPMPQDDDYQLAQALSLLKGLSITRSK
>CP027722.1|AZE02570.1|419546_420305_-|Putative-periplasmic-protein-YibQ
MIGLLCLLAFTSTQAAEPAARKAYLSLIIDDLGQNLPRDRRVLALPGPVTTAIMPDTPHAAEFAREAHRAGKIVILHMPMDPATGPFAWHPELPIEELERRLNAAFKAVPYTSGINNHMGSRMTSQPQAMAWLMAELQRRHKFFVDSRTSAKTVAAAEAQKIGLASVSRDVFLDDERTEAAIGHQLQTAIDLARKQGSAVMIGHPYPQTLAVLERELPRLKAQGIDWIDIELMISVRSNRAMSGHGKDGVYR
>CP027722.1|AZE02569.1|418718_419474_+|ABC-type-amino-acid-transport/signal-transduction-system,-periplasmic-component/domain
MFKRLLLVLASASVLFAASARAAQTPDTSLVLLTENFPPYNMARNGKNFAQGENINGIAVDIVREMFKRAGINYSLTLRFPWERIYKLALEQPGYGVFVTARLPDREPLFKWVGPIGPDDWILLARDDSKIALQSLEQARKYRIGAYKGDAIAETLAKQGLKPQVVLKDQDNARKLVGGQIDLWATGDPAGRYLARQEGVTGLKTVLRFHSAQLYLALNKEVPDETVARLQAALDQLREEGVVEEIMGRYL
>CP027722.1|AZE02579.1|428245_429682_-|Nitrogen-regulation-protein-NtrC
MSRSETVWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQQPDVIISDIRMPGASGLDLLARIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRANQHAQEQQGLEVIPALARTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLDEIGDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETLVHAGKFREDLFHRLNVIRIHIPRLSDRREDIPTLAKHFLSRAAQELAVEPKLLKSETEEYLKNLPWPGNVRQLENTCRWITVMASGREVHISDLPPELLSLPQDSAPVTNWEQALRQWADQALARGQSSLLDSAVPSFERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGMKVDGGDDDDSDEG
>CP027722.1|AZE02580.1|429678_430764_-|Nitrogen-regulation-protein-NtrB
MTISDQLHRLLLDNLTTATILLNADLRLEYMNPAAEMLLAISGQRSHGQFISELFTESAEALSSLRQAVEQAHPFTKREAMLTALTGQTLTVDYAVTPILSNGDTLLLLEVHPRDRLLRITKEEAQLSKQETSKMLVRGLAHEIKNPLGGIRGAAQLLARELPDENLKDYTNVIIEEADRLRNLVDRMLGSNKLPSLAMCNVHEVLERVSSLVEAESQGCITLVRDYDPSIPDVLIDREQMIQAVLNIVRNAMQAISSQNELRLGRICLRTRTMRQFTIGHVRHRLVTKIEIIDNGPGIPAELQETIFFPMVSGRPDGTGLGLAITQNIISQHQGLIECDSHPGHTTFSIFLPLEQGAPST
>CP027722.1|AZE02581.1|431122_431332_-|putative-MFS-type-transporter
MAIASACYALVSLVCMLLLLKRIGHNAADLSTAEQADADELAREPLATPLIEDPATLPPNIDKDAQPAH
>CP027722.1|AZE02582.1|431339_431483_+|Acetyl-CoA-acetyltransferase
MLNDGAAVWLLGSREIGMEHGVVPMARILSSASVSLCVGVAMVIERA
>CP027722.1|AZE02583.1|431624_432740_+|Methylphosphotriester-DNA--protein-cysteine-S-methyltransferase
MDNAPLLFQLPDDDTLYRALLERDPAYDGFAFVGVKSTGVFCRLTCAARKPKRENTVFFSSIKACVEAGFRACLRCRPLEQTGAQEPLVKQLLALLEHNADKRWYEGDLIELGFDPSTVRRAFKRHFGVTFLEMARLRRIGEGMQQLAGGASVIDAQISASFDSDSGFRSAFTRLLGQPPSNLRGRELLKADWLQTPIGVMLAVADAQALHLLEFFDRPALATELKRLQEHTGSTIGFGRFAPIDQIESELRRFFAGESASFTTPLALNASAFTRTVWQALRAIPPGVTRSYAEVASSIGSASAVRAVARANGANQIAIVIACHRVIGSDGSLTGYGGGLWRKRWLLEHERRLYAQVQARQHLRADEPVAG
>CP027722.1|AZE02584.1|432711_433227_-|DNA-directed-RNA-polymerase,-beta-subunit
MRVHCLYLLLLAALPAAAQIYRYTDAHGNTAYSDQPPAGVPGQAVELAPLNRIEAPRPLTPPGVDPVQTPPSRAPAYTTLELSGVPDGGVVRANNGTFEVEVRLQPPLLNEHRLRLLLDDQPYGQPGNVPSLQLVNIDRGEHRLAVQVLDGERVIQQSPPLTFTLQRVHRP
>CP027722.1|AZE02585.1|433315_433858_-|Periplasmic-chorismate-mutase-I-precursor
MTSRFCLALLTLLLAGNACAAPATLSPLLASIEERLAIADQVALSKWDSHKPVEDRPREREVIAGAVAQAPAYKLDGAAVEQFFAAQIEANKLVQYAHLSEWTLQGQAPDAPRPDLVGQIRPQLDRLQKRLLQQLADFSPHRNDPQCPQWLAQATHEGDRAPLRQLALIRATAELCVFKG
>CP027722.1|AZE02586.1|433944_435978_-|hypothetical-protein
MQWTRSLGLIACLAFGSTQAAPFYAGKSLAHPLITGLAESSATLAFIKQAGSVKGYYSVDPDEGQPQLLDDFGDATIESVFNIALDDESLTRLVLFKQRGQYRLHAYRYDENDRLYRRLEKLQPALERIAKDRKKLDAPTVKQALRQLTPLNYSVFYEDSGIDEFDQLDHSAGTLVGYFDANGQPITANPPGADQYRYKKTFVEKDGRFLTATYWRGEAPALEGEPLLYNYRASHIAWETEPQRFTGSEDGAYVEYSSFGGAVIAQGAYAHGQRTGEWSFSNPDDGWTHGRFVDGKRQGQWTESYGWQTATGEYRDDLREGRWVLSYDEGGESAVTGFQTYVQGVLDGPSEERVDGSTESGSYRNDKREGPWVTQAGRGNFENGLKSGPWILKTDKGHNQSVNFVADKKDGELRETDANGVLVLIEHYKADVLSGTREGYSPSGNLQYSQQYENGKREGRSLGYSEDGKLISDISWHNDRYEGPHLTFLRDGTPATVGRFEGGRFVGLMKQYDQDEVLYEEANWCRFDKRGSTVERCGKQRRFTHGKLSWETDFLFGSPQGSIEYNYETGQKIREKIIGDNDQITQRTYYDNGQVECQKNSVGFTWMTINQQQVKSHESDGQLTGEQLCYHRNGVVKSRELIDNGLSACRIVYDESGKRLSSSPTDCGAPATAAAGQ
>CP027722.1|AZE02587.1|436139_437546_-|Glutamine-synthetase-type-I
MSKSVQLIKDHDVKWIDLRFTDTKGTQHHVTMPARDALDDDFFEIGKMFDGSSIAGWKGIEASDMILMPVDETAVLDPFTEEPTLILVCDIIEPSTMQGYDRDPRAIAKRAEEYLKSTGIGDTVFVGPEPEFFIFDEVKFKSDISGSMFKIVSEQGSWMSDQDVEGGNKGHRPGVKGGYFPVPPFDHDHEIRTSMCNAMEEMGLVIEVHHHEVATAGQNEIGVKFNTLVNKGDEVQTLKYCVHNVADAYGRTATFMPKPLYGDNGSGMHVHMSISKDGKNTFAGEGYAGLSDTALYFIGGIIKHGKALNGFTNPSTNSYKRLVPGFEAPVMLAYSARNRSASIRIPYVSSPKARRIEARFPDPAANPYLAFAALLMAGLDGIQNKIHPGDAADKNLYDLPPEEAKEIPQVCGSLKEALEELDKGRAFLTKGGVFSDDFIDAYIALKSEEEIKVRTFVHPLEYELYYSC
>CP027722.1|AZE02588.1|437876_439331_+|tRNA-4-thiouridine-synthase
MKLIVKVFPEITIKSRPVRTRFIRQLAKNIRAVLRDLDPAVVVNGVWDNLELETAVSEPKALKEMTERLSCMPGIAHFLQVDEYPLGDFDDIVAKCKQHFGEALAGKVFAVRCKRAGKHEFSSMDVEKYVGSQLRRQCGAAGISLKEPEIEVRMEIRDQRLFVIHSQHNSIGGYPLGALEQTLVLMSGGFDSTVAAYQIMRRGLMSHFCFFNLGGRAHELGVMEVAHYIWKKYGSSQRVLFVSVPFEEVLGEILGKVDNSHMGVILKRMMLRAASSIADRLHIDALVTGEAISQVSSQTLPNLSVIDCVTDKLVLRPLIASHKQDIIDLANEIGTADFAKHMPEYCGVISVNPKTHAKRHRVEHEEKEFDMAVLERAIERAKLVPIDRVIDELGQDLQIEEVSEALAGQIVIDIRHPDAQEDDPLELAGIEIKALPFYALNARFKELDPTRQYLLYCDKGVMSRLHAHHLLSEGHANVRVYRPS

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Crispr_ID: CP027722_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027722_2

2912857-2912966

Orphan

Consensus_repeat	Method
GCTCCTACAGAAGATGTCTTCGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027722_2

>merge|CP027722|2|2912857-2912966|CRISPRCasFinder
GCTCCTACAGAAGATGTCTTCGGGCAGTTTGCGTGCGAAGTGTTGTGTCAGGCACACCGCGTTGCTGCAATCGCCGGCAAGCCTGGCTCCTACAGAAGATGTCTTCGCGC

>CP027722|2|2|2912857-2912966|CRISPRCasFinder
GCTCCTACAGAAGATGTCTTCGGGC	AGTTTGCGTGCGAAGTGTTGTGTCAGGCACACCGCGTTGCTGCAATCGCCGGCAAGCCTG
GCTCCTACAGAAGATGTCTTCGCGC

Protein	Signature genes	Signature genes Name	Protein_function
CP027722.1\|AZE04859.1\|2912108_2912738_+\|putative-amino-acid-efflux-protein	unknown	unknown	gnl\|CDD\|224199
CP027722.1\|AZE04857.1\|2910387_2911044_+\|Ribonuclease-precursor	unknown	unknown	gnl\|CDD\|238513
CP027722.1\|AZE04862.1\|2914193_2915903_-\|Sodium-dependent-phosphate-transporter	unknown	unknown	gnl\|CDD\|224202
CP027722.1\|AZE04868.1\|2921936_2922365_-\|putative-membrane-protein	unknown	unknown	gnl\|CDD\|226289
CP027722.1\|AZE04866.1\|2920030_2921188_-\|Putative-acid--amine-ligase-YgiC	unknown	unknown	gnl\|CDD\|367631
CP027722.1\|AZE04855.1\|2908937_2909252_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226827
CP027722.1\|AZE04869.1\|2922380_2923031_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371191
CP027722.1\|AZE04864.1\|2916307_2919025_-\|Mg(2+)-transport-ATPase,-P-type	unknown	unknown	gnl\|CDD\|237914
CP027722.1\|AZE04854.1\|2907504_2908725_+\|DipZ-protein	unknown	unknown	gnl\|CDD\|239310
CP027722.1\|AZE04852.1\|2906872_2907136_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371321
CP027722.1\|AZE04853.1\|2907181_2907433_+\|hypothetical-protein	unknown	unknown	unknown
CP027722.1\|AZE04865.1\|2919314_2919599_-\|hypothetical-protein	unknown	unknown	unknown
CP027722.1\|AZE04863.1\|2915924_2916140_-\|hypothetical-protein	unknown	unknown	unknown
CP027722.1\|AZE04867.1\|2921199_2921916_-\|putative-integral-membrane-protein	unknown	unknown	gnl\|CDD\|377691
CP027722.1\|AZE04860.1\|2912995_2913781_-\|hypothetical-protein	unknown	unknown	unknown
CP027722.1\|AZE04851.1\|2905839_2906580_-\|Transcriptional-regulatory-protein-ompR	unknown	unknown	gnl\|CDD\|181883
CP027722.1\|AZE04861.1\|2913852_2914206_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378473
CP027722.1\|AZE04850.1\|2904523_2905843_-\|Sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236531
CP027722.1\|AZE04858.1\|2911130_2912045_+\|L-serine-dehydratase	unknown	unknown	gnl\|CDD\|107209
CP027722.1\|AZE04856.1\|2909248_2909947_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224215

Protein	Function_ID	Function_description	E-value
CP027722.1\|AZE04859.1\|2912108_2912738_+\|putative-amino-acid-efflux-protein	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.74145e-35
CP027722.1\|AZE04857.1\|2910387_2911044_+\|Ribonuclease-precursor	gnl\|CDD\|238513	cd01062, RNase_T2_prok, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the prokaryotic RNase T2 family members.	3.64899e-72
CP027722.1\|AZE04862.1\|2914193_2915903_-\|Sodium-dependent-phosphate-transporter	gnl\|CDD\|224202	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism].	9.34322e-146
CP027722.1\|AZE04868.1\|2921936_2922365_-\|putative-membrane-protein	gnl\|CDD\|226289	COG3766, COG3766, Predicted membrane protein [Function unknown].	9.4539e-34
CP027722.1\|AZE04866.1\|2920030_2921188_-\|Putative-acid--amine-ligase-YgiC	gnl\|CDD\|367631	pfam03738, GSP_synth, Glutathionylspermidine synthase preATP-grasp. This region contains the Glutathionylspermidine synthase enzymatic activity EC:6.3.1.8. This is the C-terminal region in bi-enzymes. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design. This region, the pre-ATP grasp region, probably carries the substrate-binding site.	0
CP027722.1\|AZE04855.1\|2908937_2909252_-\|hypothetical-protein	gnl\|CDD\|226827	COG4392, COG4392, Predicted membrane protein [Function unknown].	4.32441e-27
CP027722.1\|AZE04869.1\|2922380_2923031_-\|hypothetical-protein	gnl\|CDD\|371191	pfam10679, DUF2491, Protein of unknown function (DUF2491). This is a bacterial family of uncharacterized proteins.	6.69235e-41
CP027722.1\|AZE04864.1\|2916307_2919025_-\|Mg(2+)-transport-ATPase,-P-type	gnl\|CDD\|237914	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.	0
CP027722.1\|AZE04854.1\|2907504_2908725_+\|DipZ-protein	gnl\|CDD\|239310	cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.	1.79841e-78
CP027722.1\|AZE04852.1\|2906872_2907136_+\|hypothetical-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	1.7955e-21
CP027722.1\|AZE04867.1\|2921199_2921916_-\|putative-integral-membrane-protein	gnl\|CDD\|377691	pfam06693, DUF1190, Protein of unknown function (DUF1190). This family consists of several hypothetical Enterobacterial proteins of around 212 residues in length and is known as YjfM in Escherichia coli. The function of this family is unknown.	5.7636e-23
CP027722.1\|AZE04851.1\|2905839_2906580_-\|Transcriptional-regulatory-protein-ompR	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	5.82777e-75
CP027722.1\|AZE04856.1\|2909248_2909947_-\|hypothetical-protein	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	1.0423e-55
CP027722.1\|AZE04850.1\|2904523_2905843_-\|Sensor-histidine-kinase	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	2.25508e-45
CP027722.1\|AZE04858.1\|2911130_2912045_+\|L-serine-dehydratase	gnl\|CDD\|107209	cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.	4.04657e-110
CP027722.1\|AZE04861.1\|2913852_2914206_-\|hypothetical-protein	gnl\|CDD\|378473	pfam10686, DUF2493, Protein of unknown function (DUF2493). Members of this family are all Proteobacteria. The function is not known.	5.03147e-19

>CP027722.1|AZE04859.1|2912108_2912738_+|putative-amino-acid-efflux-protein
MDATTLFLYVVTVSAVMMTPGPSMLLALNNGATHGMRIAGCGMAGAMLSDLLLIGAVGCGLGALLQASEQLFSIVKWGGAAYLLYLAWVLWKAPTQALAAQTGGSASSGRGAFVRSLLVGLSNPKGLLFFSAFLPQFVRPDEPVAQQYLILALVSTAINCVMMATYAFGGRYAMRTFSARAMLWINRSCAGMLAVLAVGLSLYRRSDIR
>CP027722.1|AZE04858.1|2911130_2912045_+|L-serine-dehydratase
MLHIRTPLILHPGLSTATRRIWLKLENLQPSGSFKMRGLGLLCSQAAQQGKRRVVCPSGGNAGLATAVAAASLGLQACIVVPQTTPQTTRERIARAGAEVLVHGQVWDQANERALQLSSDADSEYVPAFDHPVLWQGHSSMVDEILEDCPQVDTIVASVGGGGLLAGILTGLLRHQRQDCRIIACETTGSASFAAGLAAGHPVKLAKIDTVASSLGAAQVAAWPLQQIQGFAYQSLVLSDAEAILGVVRYADDLRQLVEPACGVSLAVAYLDHPAIAAARDVVIVVCGGVSISARQVADWGASL
>CP027722.1|AZE04857.1|2910387_2911044_+|Ribonuclease-precursor
MRKLFATAALAALMICTVGVSQAREARQQRDSVAGVFDYYLLSLSWSPTFCLTHPENEQCSGKGYGFVLHGLWPQYAKGGWPESCPPLTQLTAEERAKGLTLFPTAKLMEHEWSKHGTCSGLGAMGYLDTSDQALGKVKIPEVLEPSTTVHYFEAREIEQLFRQANPGIPDKGVAVLCSGPELSEVRVCLDKNLGFGACGKGVRTQCRKGDIRVPPIR
>CP027722.1|AZE04856.1|2909248_2909947_-|hypothetical-protein
MSSVHLPRAAFLRGAVAIMPLSLATAPWGLLAGSMAIEANLTPLQGQGLSSIVFAGAAQLVAIGMLKGGAGIFSILLTTLLLTSQHLLYGMSLRSVISPLPGHWRVGLGFLLTDELFALTSQHDKQQFDRWYALGVGLTFYIAWNLFTLAGIVLGRAIPGLEHLGLDFSIAATFIALITPLVRNVPTLVCVAVSLFCSVLLSYWQWGSALVLSGLLGMTAGFLCNKFYRERT
>CP027722.1|AZE04855.1|2908937_2909252_-|hypothetical-protein
MMVWAVIFGMGLLVFLNRYVFLEPRLPVRLSSNARQFLGFAVPGMLTAICGPIVFMPEHQLNLAYDNPYLISSLVAIVLVIYTRNTLLSMLLSMAFFFLLRWWL
>CP027722.1|AZE04854.1|2907504_2908725_+|DipZ-protein
MLLIAFLGGVLTILSPCILPVVPFLFARADRSRGSVLLTLGGMALTFALVSSLAVVSSDWIVRANGIGRQLALVVLGLFALSLIFARFGNWLARPWVSLGNRLDGLRLDRARKFSGPLAALLLGVATGLLWAPCAGPILGVILTGAMLQGASAQTSLLLLAYGLGSALSLGLLIFAGRGLVNRLKPSLPATAWLRRAAGYLVLLAVVAIGSGVDDRLLASTSSQGGAALEQGLLKSVPKALDYLIDKAGAAPVETLPNKGPMPSLSGAVQWLNSPPLDAEALRGKVVLVDFWTYDCINCQHSLPYVNAWAKKYAKDGLVVIGVHTPEYAFEKVIDNVKAQVRKLDIGYPVAIDNDYAIWRAFDNQYWPAHYFIDARGQVRYSHFGEGSYEAQEQVIQQLLREAKAS
>CP027722.1|AZE04853.1|2907181_2907433_+|hypothetical-protein
MNALKSSLLALTLTLAGVAVDASAADSSCATCFQLSPLSSASPLKAATLKASTLKAGTLQTHSWLAEGGYERTPQGMRADHQA
>CP027722.1|AZE04852.1|2906872_2907136_+|hypothetical-protein
MKRTALCAACLFAALNICTLSARAESTVQAQTYSYGTQLDIQKVLSMTEDAEPSCGVVNARMTYLDSQGRTQALDYRKFANNCNDGN
>CP027722.1|AZE04851.1|2905839_2906580_-|Transcriptional-regulatory-protein-ompR
MDHVDHVLIVDDDREIRELVGNYLKKNGLRTTVVADGRQMRSFLETTPVDLIVLDIMLPGDDGLLLCRELRAGKHKATPVLMLTARNDETDRIIGLEMGADDYLVKPFAARELLARINAVLRRTRMLPPNLVVTESGRLLGFGRWRLDTTARHLLDQDGTMVALSGAEYRLLRVFLDHPQRVLNRDQLLNLTQGRDADLFDRSIDLLVSRLRQRLLDDAREPAYIKTVRSEGYVFSLPVEILEAAS
>CP027722.1|AZE04850.1|2904523_2905843_-|Sensor-histidine-kinase
MKLALHWPRTLASRLSLIFLIGLALAQGLSFAAQSYERYQSAKMTMLGNLESDVSTSIAILDRLPAAERPAWLQRLQRRNYGYLLSAGEPGQPLDGEDVPVSVYSIKNALGRDYDLAFNNIPGPRQHYQAHLRLADGSPVTIDVRPALTPMSPWLPAVLLGQLLVLILCAWLAVRIAVRPLTRLAQAVDSLDPNTHGVHLDEKGPIEVVHAAKAFNALQARIGAYLKERMQLLAAISHDLQTPITRMKLRAEFMDESAEKDKLWNDLSEMEHLVREGVAYARSIHGATEASCRIDLDAFLDSLVFDYQDTGQDVELAGKNGALIDTRPHALRRVLVNLVDNALKFSGAARIEVQAQAGDRLSVKVLDRGPGISEEQLAEVLKPFYRVESSRNRDTGGTGLGLAIAQQLAVALGGSLRLSNREGGGLCAELTLVSSKASL
>CP027722.1|AZE04860.1|2912995_2913781_-|hypothetical-protein
MSKYNPSRNNRFASLTRDLPPAKRRMLRRNLMFVTLTLSLIGLLTLVAKANAAGGAYGVDDGAINAPGECNLDIWYQSLRHQGSNHGAVFSPACTFAGLPWLQVGAALERSREDGHGETQLSPQLKAQLWNREDLGLQLALATSAHFALDRGHAFDGGDISLPLTYQPLQSLRLNFNAGWAHAYDDGQQNHRWTWGSGFEYDLGERLTLVAERYGQRGGEQAWQAGPRLHLGANLDLDLVLGGQLNEGRDRWLTSGATLRF
>CP027722.1|AZE04861.1|2913852_2914206_-|hypothetical-protein
MRVLICAGRHYADVQLCRRVLDAFQRLHEVQVLIHGGSQFLGAEIEDWGREIGADIVRYPANWQLHGKLAERLRNAFMLRDSRPDLVIALPGGDDTEELVALARAAGIQTLSVSDWQ
>CP027722.1|AZE04862.1|2914193_2915903_-|Sodium-dependent-phosphate-transporter
MSGTTLLINLAGSIALLLWGTQMISSALLRGFGTQLRQWLGQHLNNRWMALLSGIAITGVLQSSTAVSLMASSFTATGTLGLAPALAVMLGANIGSTLVVQLLSVDISILTPLVLLAGFIVFRLRDDSRFESLGCALIGLGLMLLALRMLGSTLGEVEGTPVFAALMRGLDGDLLIALLAAALLTWLCHSSVAVVLLVASLAATGLLSSVTAMALVLGINIGGALPSLLNADSSVARRLPLGNLLVRLCGAAALLPCLPWIAQSAPVATLDASLQVVYLHSLFNLVLALLFIGLTGPMATLLNRLLPEPPRDVDPGMPHYLDEAGLAVANIGLSNAAREALRLADMLSLMLDRVLRLFQASTPAGADEVRRIDQSLDLLSAAIRAYLADIGQDGISDQDADRAQEILLFVINLEHAGDILSSSLTQLAARRLRRGEQFSVFELDCIEPLHQAVVDSLSLAITVFLREDLANAHQLVNRKELVRRLEADASREHFRSLREDRTAWAESGDIFQRVLRDYRRVHHHIAALAYPALERAGERDLDNAELGDVLLDNPLSIQPTAQERARCVS
>CP027722.1|AZE04863.1|2915924_2916140_-|hypothetical-protein
MKPITELLARGERTLRALLVSTLEGIAALITLVGIRLYARSLLSRAAIRLLLGLASAIHRRCIRLLRSAKP
>CP027722.1|AZE04864.1|2916307_2919025_-|Mg(2+)-transport-ATPase,-P-type
MTTVKTRTSSSQNPTRDDTRLSMRAAREAQNSLGVTLDNVKSNANGLTELDAEGRLQRDGFNEVAHDRPPHALVQLLQAFNNPFIYVLMTLTGISFFTDFWLPLQSGEETDLTGVIIVLVMVLVSGLMRFWQEYRSAKAAEALKAMVRTTATVLRREQMGMKTARREVPMRDLVVGDIVQLSAGDMIPADIRLIESRDLFISQAVLTGEALPVEKYDTLGAVQEKSAHRTAAADQQDLLDLPNICFMGTNVVSGTATAVVVATGSRTYFGSLARSIVGSRTQTAFDRGVNSVSWLLIRFMLVMVPVVLLINGFTKGDWAEAFMFALAVAVGLTPEMLPMIVSANLAKGAAAMAKRKVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHVDISGSRCDQVLQLAWLNSYHQSGMKNLMDRAVVSYAENNPKFNAPDAWSKVDELPFDFVRRRLSVILADASGHHLLVCKGAVEEMLDTATRVRQDGVTVALDAGRRAALLELAEEYNRDGFRVLLVGTRDLAPGQTRQQYSASDERELIIEGFLTFLDPPKETAGPAIAALRENGVTVKVLTGDNPIVTAKICREVGLEVGQPLLGRDIEHMDDAVLARLVEERTVFAKLTPLQKSRVLKALQANGHTVGFLGDGINDAPALRDADVGISVDSGTDIAKESADIILLEKSLMVLEEGVIKGRETFGNIMKYLNMTASSNFGNVFSVLVASAFIPFLPMLAIHLLLQNLMYDISQLSLPWDKMDKEFLRKPRKWDAKNIGRFMLWIGPTSSIFDITTYALMWFVFAANSVEMAALFQSGWFIEGLLSQTLVVHMLRTQKIPFIQSTAALPVMLMTGLVMALGIYVPFSPLGEMVGLVPLPWEYFPWLVGTLLCYCVVAQTMKTLYIRRFKQWF
>CP027722.1|AZE04865.1|2919314_2919599_-|hypothetical-protein
MNFKSTVMPGVRAFASTMRVKPCAERAGVSRVATLYSTPSSQTRPRANWRVCPVTCRLQQRWSFDDSQDPQSRSLAGLLMRAGLLLSLSRDSHF
>CP027722.1|AZE04866.1|2920030_2921188_-|Putative-acid--amine-ligase-YgiC
MKKIPCNERPDWRQTAEKLGFLFHTIDGEAYWDESAYYQFSLKQIEDDLEDPTTEIHEMCMDLVDRVVRSEALLDRLSIPPAFYDMIRTSWLEGHPHLYGRLDFSYNGQGPAKLLELNYDTPTSLYETAAFQWGWLEQNIERGVLPRHADQFNSIDTRLHQAFAQLGIERPLYFASMKDSVEDRATTDYLRLIAEKAGIESRHIDVEDIGLTAEGRFVDLQDRWIPHLFKLHAWEFIFHEPFGAAIAASDTQFFEPAWKSILSNKGILPLLWEAHPGHPNLLETHLDLHPQRDVPKGWVRKPFFSREGANIELRTPQDEVVKEDGPYTDAPYILQSFAPLPRFGDSYTLIGSWVIGDQAAGIGVREDDSLITKDSSRFLPHLILD
>CP027722.1|AZE04867.1|2921199_2921916_-|putative-integral-membrane-protein
MKRSQYVQLSLAASVALAISGCNSEPETLAVQQKFNFQSVQECVDGKIAVDVCSDAYIKAMAEHRAQAPVYDNQADCDADFVENWCQIDSNGKFVPKLGGFEINAQGAFTREQLAAAGVSPGAGQGSSLSSIDSGLLTGLLIGNLLSGGSRNYYSEPVYRYRDDRGSYANSTLNQRIASGSTFSKSRQAQSGSGFRTTTRPMSVSSSTSRGGFGSQASARSGWGGSSSSSWSSGRSSS
>CP027722.1|AZE04868.1|2921936_2922365_-|putative-membrane-protein
MLEALSISLNKFAVVGFLTYILGAAVLFALFQFVYTRLTPHKEFQLIREGNISAAIALGGAIIGFAIPASNVIAYSISLLDFAVWALIAAVVQLLAFLMTSLVLKGTSQRIRNGEIAAGIYVAAVAISVGLLNAACMTPSQN
>CP027722.1|AZE04869.1|2922380_2923031_-|hypothetical-protein
MGWFKRFLGLQAPATTSSSFATGPLGLSMGAGIRFDASLKLLLADNSRVAIPGDQAVYSEGLVDLGQSEWLSRYYLDDEDYWLQVHTSGGIDGQVKSIILFNYLSNQAVNSEAELRRLAGPDSLIGQPTYSLDGVEYQREWGTEAGQTELVPLREQVSKPDETFAFESHSMLYARDTGLTNRREFLLFSVEQYADGSVSLVTSLGISLYMTDLQTL

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Crispr_ID: CP027722_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027722_3

5338323-5338476

Orphan

Consensus_repeat	Method
AGCCAAGGCCACCACGGACTTGTAGGAGCGAGGCTTGCCCGCGATAGCGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027722_3

>merge|CP027722|3|5338323-5338476|CRISPRCasFinder
AGCCAAGGCCACCACGGACTTGTAGGAGCGAGGCTTGCCCGCGATAGCGGTACCTCAGACACACCACATTGCCCCAATCGCCGGCAAGCCTGGCTCCTACAGAAGCCAAGGCCACCACGGACTTGTAGGAGCGAGGCTTGCCCGCGATAGCGGT

>CP027722|3|3|5338323-5338476|CRISPRCasFinder
AGCCAAGGCCACCACGGACTTGTAGGAGCGAGGCTTGCCCGCGATAGCGGT	ACCTCAGACACACCACATTGCCCCAATCGCCGGCAAGCCTGGCTCCTACAGA
AGCCAAGGCCACCACGGACTTGTAGGAGCGAGGCTTGCCCGCGATAGCGGT

Protein	Signature genes	Signature genes Name	Protein_function
CP027722.1\|AZE06995.1\|5329986_5330769_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377682
CP027722.1\|AZE07006.1\|5343859_5344498_-\|Putative-threonine-efflux-protein	unknown	unknown	gnl\|CDD\|224199
CP027722.1\|AZE07002.1\|5338536_5339571_-\|Hydrolase,-alpha/beta-fold-family	unknown	unknown	gnl\|CDD\|223669
CP027722.1\|AZE07008.1\|5345196_5345469_-\|LSU-ribosomal-protein-L31p	unknown	unknown	gnl\|CDD\|234969
CP027722.1\|AZE07000.1\|5335122_5336910_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236901
CP027722.1\|AZE07004.1\|5342359_5343277_+\|Transcriptional-activator-MetR	unknown	unknown	gnl\|CDD\|176132
CP027722.1\|AZE07007.1\|5344525_5344960_-\|Nudix-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|240046
CP027722.1\|AZE06993.1\|5328059_5328458_+\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	unknown	unknown	gnl\|CDD\|185011
CP027722.1\|AZE06999.1\|5333998_5335126_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379214
CP027722.1\|AZE06998.1\|5333102_5333984_+\|putative-esterase	unknown	unknown	gnl\|CDD\|224561
CP027722.1\|AZE06994.1\|5328595_5329462_-\|fatty-acid-desaturase,-putative	unknown	unknown	gnl\|CDD\|366126
CP027722.1\|AZE07003.1\|5339938_5342251_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-methyltransferase	unknown	unknown	gnl\|CDD\|235367
CP027722.1\|AZE07009.1\|5345741_5345894_+\|Transcriptional-regulator,-LuxR-family	unknown	unknown	gnl\|CDD\|225107
CP027722.1\|AZE06996.1\|5330999_5331719_+\|2-hydroxy-3-keto-5-methylthiopentenyl-1--phosphate-phosphatase	unknown	unknown	gnl\|CDD\|319826
CP027722.1\|AZE07005.1\|5343310_5343820_-\|Acetyltransferase,-GNAT-family	unknown	unknown	gnl\|CDD\|366181
CP027722.1\|AZE07011.1\|5347711_5347996_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224278
CP027722.1\|AZE07010.1\|5346023_5347643_+\|Ferredoxin-dependent-glutamate-synthase	unknown	unknown	gnl\|CDD\|239202
CP027722.1\|AZE06997.1\|5331711_5333106_+\|Aminotransferase,-class-III	unknown	unknown	gnl\|CDD\|223238
CP027722.1\|AZE06992.1\|5327653_5328028_+\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	unknown	unknown	gnl\|CDD\|235094
CP027722.1\|AZE07001.1\|5336906_5338304_+\|Two-component,-Sigma-54-Specific,-central-transcriptional-regulator-of-acidic-amino-acid-uptake	unknown	unknown	gnl\|CDD\|225114

Protein	Function_ID	Function_description	E-value
CP027722.1\|AZE06995.1\|5329986_5330769_-\|hypothetical-protein	gnl\|CDD\|377682	pfam06629, MipA, MltA-interacting protein MipA. This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex.	2.58058e-32
CP027722.1\|AZE07006.1\|5343859_5344498_-\|Putative-threonine-efflux-protein	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	5.54499e-47
CP027722.1\|AZE07002.1\|5338536_5339571_-\|Hydrolase,-alpha/beta-fold-family	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.89945e-25
CP027722.1\|AZE07008.1\|5345196_5345469_-\|LSU-ribosomal-protein-L31p	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	2.29455e-47
CP027722.1\|AZE07000.1\|5335122_5336910_+\|hypothetical-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	2.2911e-53
CP027722.1\|AZE07004.1\|5342359_5343277_+\|Transcriptional-activator-MetR	gnl\|CDD\|176132	cd08441, PBP2_MetR, The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold. MetR, a member of the LysR family, is a positive regulator for the metA, metE, metF, and metH genes. The sulfur-containing amino acid methionine is the universal initiator of protein synthesis in all known organisms and its derivative S-adenosylmethionine (SAM) and autoinducer-2 (AI-2) are involved in various cellular processes. SAM plays a central role as methyl donor in methylation reactions, which are essential for the biosynthesis of phospholipids, proteins, DNA and RNA. The interspecies signaling molecule AI-2 is involved in cell-cell communication process (quorum sensing) and gene regulation in bacteria. Although methionine biosynthetic enzymes and metabolic pathways are well conserved in bacteria, the regulation of methionine biosynthesis involves various regulatory mechanisms. In Escherichia coli and Salmonella enterica serovar Typhimurium, MetJ and MetR regulate the expression of methionine biosynthetic genes. The MetJ repressor negatively regulates the E. coli met genes, except for metH. Several of these genes are also under the positive control of MetR with homocysteine as a co-inducer. In Bacillus subtilis, the met genes are controlled by S-box termination-antitermination system. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.93436e-124
CP027722.1\|AZE07007.1\|5344525_5344960_-\|Nudix-hydrolase-family-protein	gnl\|CDD\|240046	cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	4.4138e-47
CP027722.1\|AZE06993.1\|5328059_5328458_+\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	gnl\|CDD\|185011	PRK15051, PRK15051, 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional.	9.62894e-08
CP027722.1\|AZE06999.1\|5333998_5335126_+\|hypothetical-protein	gnl\|CDD\|379214	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions.	6.90278e-06
CP027722.1\|AZE06998.1\|5333102_5333984_+\|putative-esterase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	6.89738e-21
CP027722.1\|AZE06994.1\|5328595_5329462_-\|fatty-acid-desaturase,-putative	gnl\|CDD\|366126	pfam00487, FA_desaturase, Fatty acid desaturase.	3.0259e-19
CP027722.1\|AZE07003.1\|5339938_5342251_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-methyltransferase	gnl\|CDD\|235367	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional.	0
CP027722.1\|AZE07009.1\|5345741_5345894_+\|Transcriptional-regulator,-LuxR-family	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.39848e-12
CP027722.1\|AZE06996.1\|5330999_5331719_+\|2-hydroxy-3-keto-5-methylthiopentenyl-1--phosphate-phosphatase	gnl\|CDD\|319826	cd07524, HAD_Pase, phosphatase, similar to Bacillus subtilis MtnX; belongs to the haloacid dehalogenase-like superfamily. Bacillus subtilis recycles two toxic byproducts of polyamine metabolism, methylthioadenosine and methylthioribose, into methionine by a salvage pathway. The sixth reaction in this pathway is catalyzed by B. subtilis MtnX: the dephosphorylation of 2- hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HKMTP- 1-P) into 1,2-dihydroxy-3-keto-5-methylthiopentene. The hydrolysis of HK-MTP-1-P is a two-step mechanism involving the formation of a transiently phosphorylated aspartyl intermediate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.60223e-33
CP027722.1\|AZE07005.1\|5343310_5343820_-\|Acetyltransferase,-GNAT-family	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.25779e-15
CP027722.1\|AZE07011.1\|5347711_5347996_+\|hypothetical-protein	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	1.02503e-26
CP027722.1\|AZE07010.1\|5346023_5347643_+\|Ferredoxin-dependent-glutamate-synthase	gnl\|CDD\|239202	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.	7.98097e-178
CP027722.1\|AZE06997.1\|5331711_5333106_+\|Aminotransferase,-class-III	gnl\|CDD\|223238	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism].	3.22268e-107
CP027722.1\|AZE06992.1\|5327653_5328028_+\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	gnl\|CDD\|235094	PRK02971, PRK02971, 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional.	8.03633e-07
CP027722.1\|AZE07001.1\|5336906_5338304_+\|Two-component,-Sigma-54-Specific,-central-transcriptional-regulator-of-acidic-amino-acid-uptake	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0

>CP027722.1|AZE07001.1|5336906_5338304_+|Two-component,-Sigma-54-Specific,-central-transcriptional-regulator-of-acidic-amino-acid-uptake
MTHNLLVVDDEPKLCDLLSSALSQDGIQVFTAGNGLHALKVLEQEEIDLVISDWRMPGMDGPQLLAEVKQRYPQIPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKALQFRDILKDNQRMRAELDEHRQIDSLVGDSPTFRRVLQAVDSVRESNATILLTGESGTGKEMVARAIHQHGNRANKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDEVGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYRLNVFPIPLPALRERVEDIAPLARHFAHTLGATAGKRITGFSPQALQAMANYAWPGNIRELQNCVERATIVAAGAVIEERDLPGYLFSSPPLNAGASALPGDSLSVPSDLDAALAEVEKAYILAALQQSNGVQAAAAQLIGISERSFWYRLKKLGIQVDKIVR
>CP027722.1|AZE07000.1|5335122_5336910_+|hypothetical-protein
MTRKDRRTPRPFAISRWSLQRKLVLAFWMVSVIPTMIAAELAATTLSQIFDSNVRIWLQESTKIVEDEITETLRDNARIAQLFLRYARPPTDRNAARHDKLTADIADSMGIDVVALIRKRDHQVVFSTAADDIVGQISLAHNAVLQTLQVGGVATGAVVSTFQTTLDGIDYQLLIATYLDASFLTSVADVHSLDLRLYLAKANDFAEIFATQRFEDHPTQVPEKIENILRDTRQPTEQFTSRYSGLYRPIFNDSGELVGVIFSGLLRHSSLVGLVNQSNLFILIFLLSSAASLAVGWLVSKRLTMPLRGLSKGVQAVIAGDYRQRVPVIGGDELAELSSTFNHMSERLGELQHLEAQLRRRDRLHALGEVAMGLAHEIRNPLGIIKTATQLLHRRADLPEGDKRHLEYVISEVSRINDLITDFLDFAKPSAPIRSTLLARPLVEELIGFCEPELASHKIDAQIDDQAPGATLYADARQLKQACLNLILNAIDAMPAGGRLTLGIAQDAEHTILRVTDTGQGIEPDMLERIFTPFVTTKASGTGLGLAKVFSIMENHDGHIECSSEIDAGATFSLYIPAKGEDDEEDDENEQKAQP
>CP027722.1|AZE06999.1|5333998_5335126_+|hypothetical-protein
MITSQVFSSIQAIDRSAWNDCFPGALENWDYYLAVQDAGIEDFTWRYLAVFEDEKLVAAAPAFITRYRLDTTVSGPAKRLSERLQRWWPGLLQLPLYAIGSPVAEQCHAGTASHIPAVRRQALLGQLLHLARRDADAQGIGLLAVKDAASQDRQWAASCQAFGLQAMPSLPSALLPVPFGSQDAYLGTLGKSTRKDLRRKLRAPGPRIEWRRNIDDVLPQVIRLYEATLRRSDLQFERLPAPYFTGILQHLGERAACVLYWVDQQLVAFNLVLLDEHRLIDKFFAHDLEISREHNLYLRSWMANVDYCIQHRIALYECGQAGYASKLRLGCSFTGNSLFFQHRNPLLDTLLKGLKYVLRPDRTDPAMAAALSESS
>CP027722.1|AZE06998.1|5333102_5333984_+|putative-esterase
MTAQIDPGAGIDLGQGDAGFILGNGEVAVLLIHGLTGTPTELRRVAVGLAQAGCTVYVPTLAGHCGNNADLQATGWQDWYEGVRRTFVGIRQRHRQVFVGGLSMGAVMSMYLASEHPGQVSGLLMYSTTLKYDGWSINKLAFLTPLLMKIPFGVHICSFEEKPPYGIKNKRLRAVVERQMKAGESSSAGLLTMEGVTVRELHRMNAVVKKRMPSITTPALVLHSIEDDITSRWNADYVERKLGGPVVKVLLDNCYHMITVDLQYRRVVELSADFIERQAGPRPAVYDDQRQFA
>CP027722.1|AZE06997.1|5331711_5333106_+|Aminotransferase,-class-III
MSDIRIATAEDQVLLEKEAKYCSYGDTVHYIEPPRIFSRCEGSYVWDTSDQAYLDLQMWYSAVNFGYANPRLNNALKQQIDTLPQIASQYLHKGKIELSEMIAVDAKKKFGLDGRVHFNVGGSQSIEDSLKVVRNATHGKSLMFAFEGGYHGRTLGASSITSSYRYRRRYGHFGERANFIPFPYHFRGPKGMTKEEYGSHCVQQFARLFETEYNGVWDPKVGQSEYAAFYVEPIQGTGGYVIPPMNFYSELKHVLDQHGILMVVDEIQMGFYRTGKLWSIEHFDVKPDVIVFGKALTNGLNPLGGIWAREELINPKVFPPGSTHSTFASNPLGTAVGLEMFKMTSEIDYGAMVMEKGKYFLAGLQDLQKRYPIIGDVDGLGLALRCEICTTDGFTPDKATLDYMVEEGMKGDIEINGQRLGLILDVGGYYKNVITLAPSLEISYAEIDLGIALLDRLLDRAMKR
>CP027722.1|AZE06996.1|5330999_5331719_+|2-hydroxy-3-keto-5-methylthiopentenyl-1--phosphate-phosphatase
MMHWHIVCDFDGTITRTDVIDNVLQRFADPSWEDIEQQWLDGHIGSRECLSRQLALVKASPAELLACFDSVEIDPDFPDFVDHVIGLGASLEVVSDGIEQGIARILARHYVSLLPILANRLRQVDQNSWRIDFPHASDACRAASGNCKCKSTPKGKRVLVIGDGQSDMCVAARADFVFAKGRLAEYCQRNAIPHATFDSFAELPALLALLPNEAANAGAFALDNTTEHCVPTQELFHHV
>CP027722.1|AZE06995.1|5329986_5330769_-|hypothetical-protein
MFSFTRSALLAVLLSLGAACGAFAEDGGQDGLGGSLGLGIGYQPHDPSGSRHDTVPLPYVDLEWGDVSLDTDDGLTWDAFKGNGFSAGPYINYLPGRNANGSLRGLRDVPNMADVGGYIQYAPDDFWRLFASLGSAVAAGEGQGGLLGKVGGEIGYPLGLGIIGSNNLTAHFADARQTQTFFGISDAEAQATGIGRYSAGGGLQNLTLTQNLQVPLGGNWSWMTSASWIHLTGSAADSTLVRERGEVNQGQVQTALSYQF
>CP027722.1|AZE06994.1|5328595_5329462_-|fatty-acid-desaturase,-putative
MARPAYRLLAHSLWDIVPILMALAHFSFVLWLVLAFHSLSWWVILPAALLYAVSLSWSINSISHNQIHNAYFSLPWLNRAFDLLLSVTIGFSQTLYRDIHNRHHRGNSDRPGADGTTVDPLSIYLHGRNGQPDNVWAYTFLSFFRDDPKAIYQEMQRKRPADARWVKVEIGVTVLAYVALALYDWHALLVLLPFWYLGQSLSSLNGYYEHLGGNPDLPIAWGVSSYSRLYNLIWMNNGYHAEHHYRPKMHWTRVKAFHREIREQQRAAGVKVIPLAHGLGFLLKHPKP
>CP027722.1|AZE06993.1|5328059_5328458_+|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily
MTAQTHGWLHGRLGTLVLWALLIGFESAGQIATKVGGDQLGQMDFNLQWLAAVAVNPGVLLAIACYIGAFFVWMLILRRSSLSLAFPLSSLVFVVVLLGSWLGLGEQISLLHWVGVLVIIGGIALLAEGEEA
>CP027722.1|AZE06992.1|5327653_5328028_+|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily
MTLTVILLVAFSIVLDVIGQLCFKLGLDRLPELEGGFRLNAFWGQVFNAPLLWCGIGAYAIEFFVWLEALSRAPLSLLFPAAALAYCGVVLAGKLILGENVSRRRWLGTLVITLGVMLVCIAST
>CP027722.1|AZE07002.1|5338536_5339571_-|Hydrolase,-alpha/beta-fold-family
MWARFFSTTVFLAALLLGLPSQAASRCDVNVPTQRVELEQVSLAYQSIGRASDPALLLVMGLGGQLIHWPDEVVVALCQQGFRVIRYDNRDVGLSTWRQAPANANLTFEVLRYKLGLPVAAPYSLTDMADDALGLMNALQVEQFHVLGASMGGMIAQHLAAMAPQRVESLTLIMTSSGAEGLPAPNAALVQLLSRRGAPNREVALEQQADLLAALGSPQVTDDRQALLHQAAEAYDRAFNPEGVKRQIMAILAEPSRVALLNQLRVPTLVVHGTADPLLPVMHGVHLAAHIQGSQLKLIPGLAHRFQEAFKAPLLAAVLPYLQSHREDTSHWAQIDPLPAPNLL
>CP027722.1|AZE07003.1|5339938_5342251_-|5-methyltetrahydropteroyltriglutamate---homocysteine-methyltransferase
MALAHTLGFPRIGADRELKKALEAYWKGDLDRQALQDVGRQLRARHWQLQKDAGIDLLPVGDFAWYDQVLTHSLAFGVVPERFDSSKDAQGRPTLDTLFAMARGASAGCCGGDQAKTQYAQELTKWFDTNYHYLVPEFSADQSFKLSWEQLFDEVDEAHALGHRVKPVIIGPLTYLWLGKAKGNDFDKLELLERLLPVYGEILNRLKAQGVEWVQIDEPILTLDLPQAWKGAFERAYHILQYSPLKKLVATYFSGLQDNLGLAVGLPVDGLHIDAVRAPEQLTQVLDRLPTYKILSVGLVNGRNVWRCELEQALQQLQAAQERFGDNLWVSSSCSLLHSPVDLAREDQLDAELKSWLAFAVQKCGEISVLRDALNDPQAPAVQAALAASRQVQASRAQSPRIHKAEVQARLKAVSAADSQRHSPFAQRIAQQHARLKLPVFPTTTIGSFPQTASIRLARQAFKQGKLSNNDYTDAMRCEIRHAVQVQERLGLDVLVHGEAERNDMVEYFAEQLDGYLFTRFGWVQSYGSRCVKPAVIYGDLSRPQAMTVDWISYAQSLTDKVMKGMLTGPVTMLMWSFPREDVSREVQARQLALALRDEVVDLEKAGIKIVQIDEAAFREGLPLRRADWQPYLDWAVEAFRLTASGVRDDTQIHTHMCYSEFNDVIQAIAAMDADVITIETSRSDMELLEAFEAFDYPNDIGPGVYDIHSPRVPDTAEMVKLMSKAARRIPAERLWVNPDCGLKTRAWPETEAALVNMVAAARQLRNQQA
>CP027722.1|AZE07004.1|5342359_5343277_+|Transcriptional-activator-MetR
MLEIRHLKTLHALREADSLVEAAERLHLTQSALSHQFKELEERMGMPLFVRKTKPVRFTSAGLRLLQLADATLPLLRAAERDISRLAGGTAGRLHMAIECHSCFQWLMPTIDQFRDAWPEVELDLASGFSFAPLPALARGDLDLVVTSDPVELAGITYVPLFTYEAMLAVANQHRLASKPYIVPEDLLSETLITYPVERDRLDIFTRFLEPADIEPAQVRTSELTVMMMQLVASGRGVCGMPHWALHEYSSRGYVKAKRLGEKGLFATLYAAIRADMLDAPYMRDFLLTAKDTSFSTLDGVSAVR
>CP027722.1|AZE07005.1|5343310_5343820_-|Acetyltransferase,-GNAT-family
MSIQHLDASHAAAYRALMLEAYERHPQAFTSSVAERAAMPLSWWESRLSSPLDLLLGAFEGGELVGIVGLAFEVREKARHKATLFGLYVAQPYRHGGLGYRLVQALLQEARQRPGVRLVQLTVTAGNDAALALYQRCGFVQFGLEPLAVRVGVEYFDKLHLWREVVSPL
>CP027722.1|AZE07006.1|5343859_5344498_-|Putative-threonine-efflux-protein
MIPLHDMLIFIAAALLMVLTPGPNMIYLISRSICQGRRAGVTSLVGVVAGFFVHLFAAAIGLTAVFMAVPVAYEVLKWVGALYLMWLAWQALKPGARSPFEAQQLPPDSSRKLILMGFLTSALNPKIAVFYLSVFPQFISPEHGSVFTQSIILGLTQISVSFSVNLLIALFASGIAAWFVHNPLWLATQRYFMGFVLAGLAVRLLLEQRQTA
>CP027722.1|AZE07007.1|5344525_5344960_-|Nudix-hydrolase-family-protein
MTLSSAASPLIRIAAALLIGPDGRTLLVRKRGTQAFMQPGGKIEPSELPAQALARELEEELGLRIAPADARYLGRFCAPAANEPGFVVEAELFRLELDTDEVRPAAEIEEVRWIDPEAGDELTLAPLTRDLILPFYRASQLASA
>CP027722.1|AZE07008.1|5345196_5345469_-|LSU-ribosomal-protein-L31p
MKANIHPAYRTVLFHDTAADVYFLIGSTVDTDRTQRHSDGNTYPYVALDVSSASHPVYTGQQRKTQSEGRIAGFNKRFASFGSSGKTGNA
>CP027722.1|AZE07009.1|5345741_5345894_+|Transcriptional-regulator,-LuxR-family
MLSGCSSKEIARKLQTSAETVKVHKKHIYDKLGIKSRSELFWIFLQAQNA
>CP027722.1|AZE07010.1|5346023_5347643_+|Ferredoxin-dependent-glutamate-synthase
MSLSLLSRYAFFAACVIFTLASLPFLEHDWLWPFTLVTFLLSLLGIFDLLQSPHAVRRNYPILGNIRYLVEGIRPEIRQYLLESDSDALPFSRAQRSLVYSRAKNESADKPFGTLIDVYQSGFEFIGHSMRPAPLSDPSTFRVTVGGPQCKQPYSASVFNISAMSFGSLSANAIRALNQGAKLGNFAHDTGEGSISPYHRENGGDLTWELGSGYFGCRTSDGRFDPERFAQQAQNPQVRMIEIKMSQGAKPGHGGILPKHKVTQEIADTRGIRMGEDCISPSSHSAFSTPIEMMHFIQQLRELSGGKPVGFKFCLGHPWEFMGIAKAMLETGILPDFIVVDGKEGGTGAAPVEFTDHIGAPMREGLLFVHNTLVGLNLRDKIKLGASGKIVSAFDIASVLAIGADWANSARGFMFAIGCIQSQSCHTNKCPTGVATQDNLRQRALVVPDKAQRVFSFHRNTLKALAEMLAAAGLNHPSQLEARHLVRRMSATEIKLFSQLHVFLKPGELLTGAVTGEFYSRMWQLARADSFEPNSEAAA
>CP027722.1|AZE07011.1|5347711_5347996_+|hypothetical-protein
MLKVIAEDFIKPEHLDTVRPWYAELLEKTRQEPDCIAYDLFVDQQDPGHFIFIEQWPDRAALKAHCQTEHFTRLVPQINAFQARECRVLLMDEF

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1303285 : 1393632

Pseudomonas_phage(40.0%)

tRNA,plate,tail,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE03364.1\|1303285_1304638_+\|protease	Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage	NA	NA	NA	NA
AZE03365.1\|1304712_1307100_+	Outer membrane protein assembly factor YaeT	NA	NA	NA	NA
AZE03366.1\|1307145_1307649_+	Outer membrane chaperone Skp, precursor	NA	NA	NA	NA
AZE03367.1\|1307652_1308708_+	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	NA	NA	NA
AZE03368.1\|1308817_1309258_+	3-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
AZE03369.1\|1309254_1310031_+	Acyl-ADP--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA
AZE03370.1\|1310033_1311164_+	Lipid-A-disaccharide synthase	NA	NA	NA	NA
AZE03371.1\|1311160_1311808_+	Ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.7e-27	38.9
AZE03372.1\|1311877_1315402_+	DNA polymerase III alpha subunit	A0A2L1IZ23	Streptomyces_phage	1.4e-195	38.0
AZE03373.1\|1315542_1316490_+	Acetyl-coenzyme A carboxyl transferase alpha chain	NA	NA	NA	NA
AZE03374.1\|1316609_1317938_+\|tRNA	tRNA(Ile)-lysidine synthetase	NA	NA	NA	NA
AZE03375.1\|1317983_1318127_+	hypothetical protein	NA	NA	NA	NA
AZE03376.1\|1318212_1319844_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	6.9e-158	53.5
AZE03377.1\|1319849_1320695_+	2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase	E3T537	Cafeteria_roenbergensis_virus	1.2e-49	42.8
AZE03378.1\|1320852_1322142_+	Enolase	A0A1X9I5Z8	Streptococcus_phage	9.0e-137	59.2
AZE03379.1\|1322314_1322593_+	Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	NA	NA	NA	NA
AZE03380.1\|1322589_1323297_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
AZE03381.1\|1323462_1324359_-	Transcriptional regulator, LysR family, in formaldehyde detoxification operon	NA	NA	NA	NA
AZE03382.1\|1324465_1325578_+	S-(hydroxymethyl)glutathione dehydrogenase	E3SJ82	Synechococcus_phage	8.3e-30	27.2
AZE03383.1\|1325666_1326512_+	S-formylglutathione hydrolase	NA	NA	NA	NA
AZE03384.1\|1326564_1327038_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AZE03385.1\|1327034_1328093_+\|tRNA	tRNA pseudouridine(13) synthase	NA	NA	NA	NA
AZE03386.1\|1328080_1328830_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-68	52.6
AZE03387.1\|1328829_1329507_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.8e-43	52.0
AZE03388.1\|1329797_1330550_+	Murein hydrolase activator NlpD	A0A0S2SXL7	Bacillus_phage	5.7e-06	33.3
AZE03389.1\|1330656_1331661_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
AZE03390.1\|1332162_1332486_-	4Fe-4S dicluster domain	NA	NA	NA	NA
AZE03391.1\|1332628_1335208_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.8e-27	22.0
AZE03392.1\|1335404_1336130_+	Transcriptional regulator	B5TK58	Pseudomonas_phage	1.3e-124	91.4
AZE03393.1\|1336870_1337452_+	hypothetical protein	NA	NA	NA	NA
AZE03394.1\|1337554_1337902_+	Holin	B5TK61	Pseudomonas_phage	1.0e-50	87.7
AZE03395.1\|1338068_1338833_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	2.0e-06	26.3
AZE03396.1\|1339055_1339580_+	hypothetical protein	NA	NA	NA	NA
AZE03397.1\|1339583_1340192_+\|plate	Baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	1.8e-47	59.1
AZE03398.1\|1340205_1340538_+\|plate	Baseplate assembly protein W	A0A2H4JI46	uncultured_Caudovirales_phage	2.1e-37	69.1
AZE03399.1\|1340534_1341530_+\|plate	Phage-related baseplate assembly protein	A0A2H4JC04	uncultured_Caudovirales_phage	5.2e-108	62.3
AZE03400.1\|1341526_1342261_+\|tail	Phage tail fiber	A0A2H4JDK0	uncultured_Caudovirales_phage	9.0e-41	52.0
AZE03401.1\|1342257_1342794_+\|tail	Phage tail fiber	A2I2X8	Vibrio_virus	1.0e-49	62.1
AZE03402.1\|1342897_1343650_+	hypothetical protein	NA	NA	NA	NA
AZE03403.1\|1343661_1343898_+	hypothetical protein	M4NK32	Synechococcus_phage	9.7e-05	40.0
AZE03404.1\|1343985_1344207_+	hypothetical protein	NA	NA	NA	NA
AZE03405.1\|1344209_1345376_+\|tail	Major tail sheath protein	B0ZSG8	Halomonas_phage	8.5e-126	57.5
AZE03406.1\|1345375_1345882_+	hypothetical protein	Q6R4W3	Vibrio_virus	2.1e-25	37.5
AZE03407.1\|1346008_1346590_+	hypothetical protein	B0ZSH0	Halomonas_phage	9.1e-28	39.1
AZE03408.1\|1346586_1346712_+	hypothetical protein	NA	NA	NA	NA
AZE03409.1\|1346718_1348983_+	Phage protein	A0A2H4JAA5	uncultured_Caudovirales_phage	1.8e-07	40.5
AZE03410.1\|1348982_1349366_+\|tail	Unclassified tail protein	A0A2H4JAC8	uncultured_Caudovirales_phage	4.7e-33	53.5
AZE03411.1\|1349358_1349571_+\|tail	P2-like prophage tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	3.9e-21	68.6
AZE03412.1\|1349580_1350600_+\|tail	Phage tail protein D	A0A2H4JH05	uncultured_Caudovirales_phage	9.4e-105	56.8
AZE03413.1\|1350780_1351365_+	hypothetical protein	B5TK65	Pseudomonas_phage	6.9e-76	72.0
AZE03414.1\|1351361_1351544_+	Mu-like prophage FluMu protein GP38	B5TK66	Pseudomonas_phage	6.5e-25	93.3
AZE03415.1\|1351543_1353040_+\|tail	Bacteriophage tail sheath protein	B5TK67	Pseudomonas_phage	1.0e-256	90.6
AZE03416.1\|1353106_1353454_+\|tail	Phage tail tube protein	B5TK68	Pseudomonas_phage	2.9e-58	93.9
AZE03417.1\|1353450_1353747_+\|tail	Phage small tail protein E	B5TK69	Pseudomonas_phage	2.3e-43	94.9
AZE03418.1\|1353877_1355953_+\|tail	Phage tail length tape-measure protein	B5TK70	Pseudomonas_phage	2.4e-38	48.2
AZE03419.1\|1355939_1357178_+\|tail	Phage tail/DNA circulation protein	B5TK71	Pseudomonas_phage	2.2e-180	75.5
AZE03420.1\|1357181_1358222_+\|tail	Prophage tail protein	B5TK72	Pseudomonas_phage	3.8e-162	82.7
AZE03421.1\|1358255_1358849_+\|plate	Prophage baseplate assembly protein V	B5TK73	Pseudomonas_phage	2.6e-78	88.2
AZE03422.1\|1358848_1359247_+	Bacteriophage protein GP46	B5TK74	Pseudomonas_phage	4.8e-65	88.6
AZE03423.1\|1359236_1360277_+	Phage FluMu protein gp47	B5TK75	Pseudomonas_phage	1.4e-167	87.3
AZE03424.1\|1360264_1360864_+\|tail	Prophage tail protein	B5TK76	Pseudomonas_phage	1.9e-105	91.0
AZE03425.1\|1360875_1361733_+\|tail	Prophage tail fiber protein	B5TK77	Pseudomonas_phage	1.5e-23	76.4
AZE03426.1\|1361737_1362379_+	hypothetical protein	B5TK78	Pseudomonas_phage	6.2e-38	62.1
AZE03427.1\|1362577_1362706_-	hypothetical protein	NA	NA	NA	NA
AZE03428.1\|1362762_1364316_+\|tail	Prophage tail fiber protein	A4PE45	Ralstonia_virus	1.8e-38	54.2
AZE03429.1\|1364317_1364788_+	hypothetical protein	A0A2H4EXG4	Aeromonas_phage	3.2e-07	35.0
AZE03430.1\|1364932_1365112_-	hypothetical protein	NA	NA	NA	NA
AZE03431.1\|1365180_1366263_+\|tail	Prophage tail fiber protein	B5TK79	Pseudomonas_phage	1.4e-111	56.6
AZE03432.1\|1366726_1366873_+	hypothetical protein	NA	NA	NA	NA
AZE03433.1\|1366894_1367458_+	Lytic enzyme	B5TK83	Pseudomonas_phage	8.9e-89	84.4
AZE03434.1\|1367439_1367976_+	hypothetical protein	B5TK84	Pseudomonas_phage	5.2e-62	72.5
AZE03435.1\|1368058_1368559_+	Nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	6.1e-73	86.7
AZE03436.1\|1368642_1369695_+	RecA protein	A0A0S2MVG1	Bacillus_phage	4.4e-113	60.9
AZE03437.1\|1369703_1370171_+	Regulatory protein RecX	NA	NA	NA	NA
AZE03438.1\|1370216_1371332_-	Decarboxylase family protein	NA	NA	NA	NA
AZE03439.1\|1371815_1372010_+	hypothetical protein	NA	NA	NA	NA
AZE03440.1\|1372011_1372434_-	Putative NADPH-quinone reductase (modulator of drug activity B)	NA	NA	NA	NA
AZE03441.1\|1372623_1373334_+	putative conserved protein YfiP, contains DTW domain	NA	NA	NA	NA
AZE03442.1\|1373669_1374320_+	Transcriptional regulator, LuxR family	NA	NA	NA	NA
AZE03443.1\|1374396_1374759_+	Diacylglycerol kinase	NA	NA	NA	NA
AZE03444.1\|1374755_1375682_-	LysR family transcriptional regulator	NA	NA	NA	NA
AZE03445.1\|1375815_1376595_+	Ferredoxin--NADP(+) reductase	NA	NA	NA	NA
AZE03446.1\|1376667_1377363_-	S-adenosylmethionine-dependent methyltransferase YaeB	NA	NA	NA	NA
AZE03447.1\|1377449_1378220_-	Rhamnolipid biosynthesis 3-oxoacyl-ACP reductase RhlG	NA	NA	NA	NA
AZE03448.1\|1378353_1378815_-	Uncharacterized protein YehS	Q9EYF4	Enterobacteria_phage	8.5e-37	51.3
AZE03449.1\|1378881_1379592_-	Ribosomal large subunit pseudouridine synthase F	NA	NA	NA	NA
AZE03450.1\|1379674_1380148_-	Acetyltransferase	NA	NA	NA	NA
AZE03451.1\|1380254_1381592_-	Ribosomal protein S12p Asp88 methylthiotransferase	NA	NA	NA	NA
AZE03452.1\|1381692_1381962_-	hypothetical protein	NA	NA	NA	NA
AZE03453.1\|1381983_1383825_+	Kup system potassium uptake protein	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	8.0e-78	35.0
AZE03454.1\|1384024_1384300_-	hypothetical protein	NA	NA	NA	NA
AZE03455.1\|1384797_1386093_-	Alanylphosphatidylglycerol hydrolase, periplasmic	NA	NA	NA	NA
AZE03456.1\|1386092_1388741_-	Alanylphosphatidylglycerol synthase	NA	NA	NA	NA
AZE03457.1\|1389679_1390744_+	DNA polymerase IV	NA	NA	NA	NA
AZE03458.1\|1390945_1391899_-	putative lipoprotein	NA	NA	NA	NA
AZE03459.1\|1391916_1393632_-\|tRNA	Prolyl-tRNA synthetase, bacterial type	NA	NA	NA	NA

DBSCAN-SWA_2

2148497 : 2263229

116

uncultured_Caudovirales_phage(56.82%)

integrase,portal,protease,terminase,tRNA,tail,plate

attL 2151116:2151134|attR 2250150:2250168

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE04135.1\|2148497_2149106_-\|protease	SOS-response repressor and protease LexA	A0A2H4JG58	uncultured_Caudovirales_phage	1.1e-12	55.4
AZE04136.1\|2149358_2150066_+	putative transcriptional regulator for fatty acid degradation FadQ, TetR family	NA	NA	NA	NA
AZE04137.1\|2150258_2151269_+	beta-N-acetylglucosaminidase	NA	NA	NA	NA
2151116:2151134	attL	NA	NA	NA	NA
AZE04138.1\|2151280_2152024_+	S-methyl-5'-thioinosine phosphorylase	NA	NA	NA	NA
AZE04139.1\|2152128_2154822_-	DNA/RNA helicase, SNF2 family	V9XTV7	Choristoneura_murinana_nucleopolyhedrovirus	1.0e-49	29.9
AZE04140.1\|2154833_2155397_-	hypothetical protein	NA	NA	NA	NA
AZE04141.1\|2155407_2158857_-	Transcription-repair coupling factor	NA	NA	NA	NA
AZE04142.1\|2159105_2160671_+	NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
AZE04143.1\|2160818_2162117_-	putative MFS-type transporter	Q6JIH2	Burkholderia_virus	1.4e-68	37.9
AZE04144.1\|2162490_2163468_+	FAD:protein FMN transferase	NA	NA	NA	NA
AZE04145.1\|2163669_2165064_+	Soluble pyridine nucleotide transhydrogenase	NA	NA	NA	NA
AZE04146.1\|2165106_2165829_-	Glycerophosphoryl diester phosphodiesterase	A0A292GJA3	Xanthomonas_phage	7.8e-05	40.4
AZE04147.1\|2165890_2166478_-	hypothetical protein	NA	NA	NA	NA
AZE04148.1\|2166572_2167823_+	Lipoprotein releasing system transmembrane protein LolC	NA	NA	NA	NA
AZE04149.1\|2167815_2168514_+	Lipoprotein-releasing system ATP-binding protein LolD	G9BWD6	Planktothrix_phage	5.8e-37	41.1
AZE04150.1\|2168578_2169823_+	Lipoprotein releasing system transmembrane protein LolE	NA	NA	NA	NA
AZE04151.1\|2169885_2171247_-	Copper sensory histidine kinase CusS	B5LWN8	Feldmannia_species_virus	3.5e-06	22.7
AZE04152.1\|2171246_2171927_-	Copper-sensing two-component system response regulator CusR	NA	NA	NA	NA
AZE04153.1\|2172082_2172637_+	Copper tolerance protein	NA	NA	NA	NA
AZE04154.1\|2172705_2173536_+	NADPH-dependent 7-cyano-7-deazaguanine reductase	A0A2I7SAX1	Vibrio_phage	2.8e-38	37.4
AZE04155.1\|2173584_2173848_-	Chromosome segregation ATPase	NA	NA	NA	NA
AZE04156.1\|2173961_2174582_-	Phosphonoacetaldehyde phosphonohydrolase-related protein	NA	NA	NA	NA
AZE04157.1\|2174784_2175468_+	Outer-membrane-phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
AZE04158.1\|2175528_2175828_-	hypothetical protein	NA	NA	NA	NA
AZE04159.1\|2176105_2177287_+	Serine phosphatase RsbU, regulator of sigma subunit	NA	NA	NA	NA
AZE04160.1\|2177286_2177769_+	Serine-protein kinase RsbW	NA	NA	NA	NA
AZE04161.1\|2177843_2178770_-	Transaldolase	A0A127KNC6	Cyanophage	1.2e-13	33.5
AZE04162.1\|2178959_2179895_-\|tRNA	tRNA-dihydrouridine(20/20a) synthase	NA	NA	NA	NA
AZE04163.1\|2180073_2181195_+\|integrase	Phage integrase family protein	L7TP61	Pseudomonas_virus	1.4e-130	60.9
AZE04164.1\|2181195_2181471_-	hypothetical protein	A0A2K8HN48	Pseudomonas_phage	8.3e-24	63.1
AZE04165.1\|2181467_2182463_-	hypothetical protein	A0A0C5AC63	Paenibacillus_phage	2.2e-05	29.1
AZE04166.1\|2182963_2183053_-	hypothetical protein	NA	NA	NA	NA
AZE04167.1\|2183049_2183271_-	hypothetical protein	NA	NA	NA	NA
AZE04168.1\|2183267_2183687_-	hypothetical protein	NA	NA	NA	NA
AZE04169.1\|2183736_2184054_-	transcriptional regulator, putative	NA	NA	NA	NA
AZE04170.1\|2184212_2184497_-	DNA-binding protein Roi-related protein	NA	NA	NA	NA
AZE04171.1\|2184507_2185098_-	hypothetical protein	NA	NA	NA	NA
AZE04172.1\|2185094_2185271_-	hypothetical protein	NA	NA	NA	NA
AZE04173.1\|2186189_2187233_+	Retron-type RNA-directed DNA polymerase	NA	NA	NA	NA
AZE04174.1\|2187222_2187870_-	SOS-response transcriptional repressor	A0A0M3LSL8	Mannheimia_phage	2.8e-14	44.6
AZE04175.1\|2187969_2188200_+	hypothetical protein	NA	NA	NA	NA
AZE04176.1\|2188216_2188417_-	hypothetical protein	NA	NA	NA	NA
AZE04177.1\|2188531_2189050_+	hypothetical protein	NA	NA	NA	NA
AZE04178.1\|2189042_2189270_+	hypothetical protein	A0A218M4I6	Erwinia_phage	1.0e-06	44.0
AZE04179.1\|2189259_2191476_+	DNA primase, phage associated	A0A2D1GN57	Marinobacter_phage	9.3e-190	47.2
AZE04180.1\|2191468_2191831_+	hypothetical protein	NA	NA	NA	NA
AZE04181.1\|2192349_2192694_+	Holin	A0A2H4J893	uncultured_Caudovirales_phage	5.3e-44	81.5
AZE04182.1\|2192839_2193439_+	hypothetical protein	A0A2H4JG15	uncultured_Caudovirales_phage	3.4e-62	67.9
AZE04183.1\|2193443_2195465_+\|terminase	terminase, large subunit, putative	A0A2H4J898	uncultured_Caudovirales_phage	0.0e+00	82.3
AZE04184.1\|2195466_2195673_+	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	7.6e-22	73.5
AZE04185.1\|2195672_2197154_+\|portal	phage portal protein, lambda family	A0A2H4JFL5	uncultured_Caudovirales_phage	2.2e-243	84.6
AZE04186.1\|2197150_2198296_+\|protease	Prophage Clp protease-like protein	A0A2H4JDI2	uncultured_Caudovirales_phage	8.0e-137	70.0
AZE04187.1\|2198292_2198637_+	hypothetical protein	A0A2H4JF15	uncultured_Caudovirales_phage	8.8e-47	86.0
AZE04188.1\|2198800_2199796_+	Phage protein	A0A2H4J890	uncultured_Caudovirales_phage	1.1e-166	87.3
AZE04189.1\|2199798_2200113_+	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	3.7e-28	58.7
AZE04190.1\|2200109_2200772_+	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	4.0e-72	63.3
AZE04191.1\|2200764_2201295_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	2.0e-42	54.5
AZE04192.1\|2201291_2201873_+\|plate	Baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	2.3e-55	67.7
AZE04193.1\|2201916_2202132_+	hypothetical protein	NA	NA	NA	NA
AZE04194.1\|2202134_2202461_+\|plate	Phage baseplate assembly protein	A0A2H4JA09	uncultured_Caudovirales_phage	6.2e-34	65.1
AZE04195.1\|2202457_2203339_+\|plate	Baseplate assembly protein J	A0A2H4JFK9	uncultured_Caudovirales_phage	3.5e-108	69.2
AZE04196.1\|2203340_2203949_+\|tail	Phage tail fiber	A0A2H4JDH5	uncultured_Caudovirales_phage	6.3e-80	72.7
AZE04197.1\|2203941_2205489_+\|tail	Phage tail fiber protein	A0A077K818	Ralstonia_phage	1.9e-72	55.6
AZE04198.1\|2206023_2207187_+\|tail	Phage tail sheath monomer	A0A2H4J869	uncultured_Caudovirales_phage	1.2e-180	81.2
AZE04199.1\|2207199_2207709_+\|tail	Phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	1.3e-65	72.5
AZE04200.1\|2207734_2208031_+	hypothetical protein	A0A2H4J873	uncultured_Caudovirales_phage	2.1e-20	57.4
AZE04201.1\|2208162_2210715_+	Phage protein	A0A2H4JG00	uncultured_Caudovirales_phage	1.1e-85	36.0
AZE04202.1\|2210724_2211570_+	Phage protein U	A0A2H4J875	uncultured_Caudovirales_phage	3.5e-89	58.6
AZE04203.1\|2211544_2211751_+\|tail	Phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	9.3e-20	68.7
AZE04204.1\|2211807_2212860_+\|tail	Phage tail protein D	A0A2H4JBF6	uncultured_Caudovirales_phage	3.2e-148	74.9
AZE04205.1\|2212883_2213435_+	Phage endolysin	A0A2H4JHX4	uncultured_Caudovirales_phage	6.5e-68	69.2
AZE04206.1\|2213572_2213689_-	hypothetical protein	NA	NA	NA	NA
AZE04207.1\|2213705_2213930_+	hypothetical protein	NA	NA	NA	NA
AZE04208.1\|2214128_2214923_+	Dam modification methylase	C7BGE1	Burkholderia_phage	2.4e-103	66.9
AZE04209.1\|2215787_2216474_-	Gifsy-2 prophage protein	A0A2H4J991	uncultured_Caudovirales_phage	1.5e-82	64.6
AZE04210.1\|2216502_2216874_-	hypothetical protein	NA	NA	NA	NA
AZE04211.1\|2217105_2217780_+	hypothetical protein	NA	NA	NA	NA
AZE04212.1\|2219304_2220588_-	ABC transport protein, ATP-binding subunit	NA	NA	NA	NA
AZE04213.1\|2221110_2221749_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
AZE04214.1\|2221843_2222698_+	Transcriptional regulator	NA	NA	NA	NA
AZE04215.1\|2222750_2223239_-	hypothetical protein	NA	NA	NA	NA
AZE04216.1\|2223496_2225059_+	Two-component transcriptional response regulator, LuxR family	NA	NA	NA	NA
AZE04217.1\|2225062_2225653_-	Acetyltransferase	NA	NA	NA	NA
AZE04218.1\|2225840_2226677_+	N-hydroxyarylamine O-acetyltransferase	NA	NA	NA	NA
AZE04219.1\|2226689_2227112_-	hypothetical protein	NA	NA	NA	NA
AZE04220.1\|2227173_2227593_-	hypothetical protein	NA	NA	NA	NA
AZE04221.1\|2227832_2229371_+	Xanthine/uracil permease family protein	NA	NA	NA	NA
AZE04222.1\|2229425_2230583_-	putative MFS-type transporter	NA	NA	NA	NA
AZE04223.1\|2230625_2230799_+	hypothetical protein	NA	NA	NA	NA
AZE04224.1\|2231491_2231725_+	hypothetical protein	NA	NA	NA	NA
AZE04225.1\|2231731_2231926_-	hypothetical protein	NA	NA	NA	NA
AZE04226.1\|2232060_2233257_-	aromatic-amino-acid aminotransferase	NA	NA	NA	NA
AZE04227.1\|2233592_2235608_+	Excinuclease ABC subunit B	NA	NA	NA	NA
AZE04228.1\|2235719_2235845_-	hypothetical protein	NA	NA	NA	NA
AZE04229.1\|2235848_2237330_+\|tRNA	Glutamyl-tRNA synthetase	NA	NA	NA	NA
AZE04230.1\|2238263_2238803_+	Transcriptional regulator, AcrR family	NA	NA	NA	NA
AZE04231.1\|2238832_2239666_+	Putative hydrolase	NA	NA	NA	NA
AZE04232.1\|2239714_2240152_+	4-hydroxybenzoyl-CoA thioesterase domain protein	NA	NA	NA	NA
AZE04233.1\|2240270_2241230_+\|tRNA	tRNA-dihydrouridine(16) synthase	NA	NA	NA	NA
AZE04234.1\|2241351_2241798_+	Small heat shock protein	A0A1D8KN82	Synechococcus_phage	2.9e-18	37.0
AZE04235.1\|2241882_2242833_-	Mobile element protein	A4PE56	Ralstonia_virus	3.0e-97	57.9
AZE04236.1\|2243107_2243227_+	hypothetical protein	NA	NA	NA	NA
AZE04237.1\|2243299_2243998_+\|tRNA	putative tRNA ligase	NA	NA	NA	NA
AZE04238.1\|2243994_2246679_+	Putative molecular chaperone, DnaJ family	NA	NA	NA	NA
AZE04239.1\|2246675_2248367_-	Chaperone protein HscC	M4R062	Micromonas_pusilla_virus	8.6e-79	38.9
AZE04240.1\|2248475_2251754_-	Sensory box/GGDEF family protein	A0A127AWB9	Bacillus_phage	6.5e-14	30.3
2250150:2250168	attR	NA	NA	NA	NA
AZE04241.1\|2251835_2252726_-	Cys regulon transcriptional activator CysB	NA	NA	NA	NA
AZE04242.1\|2252871_2254290_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
AZE04243.1\|2254300_2254945_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
AZE04244.1\|2254951_2255119_-	hypothetical protein	NA	NA	NA	NA
AZE04245.1\|2255173_2256256_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
AZE04246.1\|2256310_2257423_+	Aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
AZE04247.1\|2257607_2258618_+	Aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
AZE04248.1\|2258820_2261436_+	putative type IV pilus assembly FimV-related transmembrane protein	NA	NA	NA	NA
AZE04249.1\|2261514_2262174_-	Iron-sulfur cluster-binding protein	NA	NA	NA	NA
AZE04250.1\|2262374_2263229_+\|tRNA	tRNA pseudouridine(38-40) synthase	NA	NA	NA	NA

DBSCAN-SWA_3

3793608 : 3845381

uncultured_Caudovirales_phage(50.0%)

integrase,tail,transposase,protease

attL 3792222:3792236|attR 3805175:3805189

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3792222:3792236	attL	NA	NA	NA	NA
AZE05628.1\|3793608_3793887_+\|transposase	ISxac3 transposase	U5P4I9	Shigella_phage	2.0e-17	58.8
AZE05629.1\|3793877_3794759_+\|transposase	ISxac3 transposase	U5P429	Shigella_phage	8.7e-99	63.3
AZE05630.1\|3795067_3795358_+	hypothetical protein	NA	NA	NA	NA
AZE05631.1\|3796753_3796933_-	hypothetical protein	NA	NA	NA	NA
AZE05632.1\|3797513_3798140_-	hypothetical protein	NA	NA	NA	NA
AZE05633.1\|3799745_3800114_+	hypothetical protein	NA	NA	NA	NA
AZE05634.1\|3800141_3800378_+	hypothetical protein	NA	NA	NA	NA
AZE05635.1\|3800443_3801238_-	Dam modification methylase	C7BGE1	Burkholderia_phage	1.5e-102	66.5
AZE05636.1\|3801436_3801661_-	hypothetical protein	NA	NA	NA	NA
AZE05637.1\|3801931_3802483_-	Phage endolysin	A0A2H4JHX4	uncultured_Caudovirales_phage	2.5e-67	68.7
AZE05638.1\|3802506_3803559_-\|tail	Phage tail protein D	A0A2H4JBF6	uncultured_Caudovirales_phage	1.3e-149	75.5
AZE05639.1\|3803615_3803822_-\|tail	Phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.1e-19	67.2
AZE05640.1\|3803796_3804285_-	Phage protein U	A0A2H4J875	uncultured_Caudovirales_phage	4.9e-59	66.5
AZE05641.1\|3804365_3804743_+\|integrase	Phage-related integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	6.0e-41	69.8
AZE05642.1\|3804765_3805062_+	Integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	3.5e-20	59.4
AZE05643.1\|3805655_3806630_+	Quinone oxidoreductase	NA	NA	NA	NA
3805175:3805189	attR	NA	NA	NA	NA
AZE05644.1\|3806675_3807581_+	Transcriptional regulator, LysR family	NA	NA	NA	NA
AZE05645.1\|3807587_3808481_-	Transcriptional regulator, LysR family	NA	NA	NA	NA
AZE05646.1\|3808566_3809343_+	Putative NADPH-quinone reductase	NA	NA	NA	NA
AZE05647.1\|3809402_3810182_-	Short-chain dehydrogenase	NA	NA	NA	NA
AZE05648.1\|3810217_3810613_-	hypothetical protein	NA	NA	NA	NA
AZE05649.1\|3810707_3811631_+	Transcriptional regulator, LysR family	NA	NA	NA	NA
AZE05650.1\|3811650_3812244_-	Transcriptional regulator, TetR family	NA	NA	NA	NA
AZE05651.1\|3812487_3813516_+	hypothetical protein	L7XZI3	Megavirus	2.0e-06	26.4
AZE05652.1\|3813545_3814490_+	Permease of the drug/metabolite transporter (DMT) superfamily	NA	NA	NA	NA
AZE05653.1\|3814543_3815275_+	Lignin beta-ether hydrolase	NA	NA	NA	NA
AZE05654.1\|3815264_3815708_+	1,4-dihydroxy-2-naphthoyl-CoA hydrolase in phylloquinone biosynthesis	NA	NA	NA	NA
AZE05655.1\|3815720_3817004_+	hypothetical protein	NA	NA	NA	NA
AZE05656.1\|3817128_3817962_+	Enoyl-CoA hydratase	NA	NA	NA	NA
AZE05657.1\|3818108_3818324_-	hypothetical protein	NA	NA	NA	NA
AZE05658.1\|3818445_3821589_-	RND efflux system, inner membrane transporter	NA	NA	NA	NA
AZE05659.1\|3821601_3822798_-	RND efflux system, membrane fusion protein	NA	NA	NA	NA
AZE05660.1\|3822893_3823379_+	Redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA
AZE05661.1\|3823433_3824129_-	Ribonucleotide reductase of class III (anaerobic), activating protein	NA	NA	NA	NA
AZE05662.1\|3824125_3824293_-	hypothetical protein	NA	NA	NA	NA
AZE05663.1\|3824325_3826338_-	Ribonucleotide reductase of class III (anaerobic), large subunit	D9ZNH0	Clostridium_phage	6.8e-139	44.5
AZE05664.1\|3827246_3827429_-	hypothetical protein	NA	NA	NA	NA
AZE05665.1\|3827676_3828669_-	Cyclic pyranopterin phosphate synthase (MoaA)	NA	NA	NA	NA
AZE05666.1\|3828679_3829642_-	PpiC-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
AZE05667.1\|3829652_3830333_-	Respiratory nitrate reductase gamma chain	NA	NA	NA	NA
AZE05668.1\|3830325_3831081_-	Respiratory nitrate reductase delta chain	NA	NA	NA	NA
AZE05669.1\|3831083_3832622_-	Respiratory nitrate reductase beta chain	A0A077SL61	Escherichia_phage	1.4e-19	44.2
AZE05670.1\|3832631_3836399_-	Respiratory nitrate reductase alpha chain	NA	NA	NA	NA
AZE05671.1\|3836466_3837864_-	Nitrate/nitrite transporter NarK	NA	NA	NA	NA
AZE05672.1\|3837850_3839146_-	Nitrate/nitrite transporter NarK	NA	NA	NA	NA
AZE05673.1\|3839474_3841289_+	Nitrate/nitrite sensor protein NarQ	NA	NA	NA	NA
AZE05674.1\|3841285_3841933_+	Nitrate/nitrite response regulator protein	NA	NA	NA	NA
AZE05675.1\|3842028_3842706_+	Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family)	NA	NA	NA	NA
AZE05676.1\|3843008_3843491_-	Putative lipid carrier protein	NA	NA	NA	NA
AZE05677.1\|3843484_3844375_-	putative peptidase U32 family member YhbV	NA	NA	NA	NA
AZE05678.1\|3844385_3845381_-\|protease	putative protease YhbU	NA	NA	NA	NA

DBSCAN-SWA_4

4235892 : 4242151

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE06006.1\|4235892_4236285_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.5e-58	83.8
AZE06007.1\|4236288_4236651_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.9e-44	75.0
AZE06008.1\|4236650_4236950_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.1e-32	69.7
AZE06009.1\|4236946_4237282_+\|tRNA	tRNA 2-thiouridine synthesis protein TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	1.9e-46	82.0
AZE06010.1\|4237278_4238280_+	Anthranilate phosphoribosyltransferase like	A0A2H4JBY5	uncultured_Caudovirales_phage	1.2e-165	84.8
AZE06011.1\|4238369_4239377_+	Glutathione S-transferase, omega	NA	NA	NA	NA
AZE06012.1\|4239475_4240870_-	Precorrin-2 oxidase	NA	NA	NA	NA
AZE06013.1\|4240870_4242151_-\|tRNA	Seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.1e-101	55.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027722

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection