CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033931	Chryseobacterium bernardetii strain H4638 chromosome, complete genome	5 crisprs	csa3,DEDDh,cas2,cas1,cas9,c2c10_CAS-V-U3,WYL,PD-DExK,cas3	0	14	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP033931_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033931_1

1225303-1227043

TypeII

Consensus_repeat	Method
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	CRISPRCasFinder
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	PILER-CR

22 spacers

cas2,cas1,cas9

The CRISPR arrays of CP033931_1

>merge|CP033931|1|1225303-1227043|CRISPRCasFinder,PILER-CR
TTATATAAGAAGTTTCAAAAATTATTATCTTCGTGATTAGTCACAGCAATGTACTGAAGTACCTTTTGAAGGTAAAAGTTGTGAATTGCTTTCAAAATTTACTATCTTCGTGATTAGTCACAGCAAAGCCTAAATAGTAGAAGGGTAACCCTGCGTTGTGAATTGCTTTCAAAATTTACTATCTTCGTGATTAGTCACAGCTATTTTTTTTACTTCCTTCATGTCTGTTTCGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCAACACACTGCTTAATATGCATGGCCATAGCGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCCAGGTATAATACCACGATTAATAGCCTCTTGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCCTCATTCTTTTGGCCAGCAGCAATGACATTGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCACAAAAAGGGACACAACGTCACCACCGATAGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCCGGCGGGAACTTATGATGAATTAAGGAAGTGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCTTCTACGGTCTTTGATAGATCGTTAGTTGTGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCCTATCCACAGATATCTTCCACTTATCACCAGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCGATATAGCAAATATATAACATTGTTCATAAGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCACAACAACAATTATATCATATGTCACACAAGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCGCGATGGACAAATCATTATTTTATACGCTAGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCTAGGGTCCTGTACTAATACACGAGAGCCGTGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCCTCCATTTCCTCGCCTAACAGCCTCTAAGCGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCCAGGATTTGCTGGGATTGCACATACTGCCAGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCGAATTGAAGTTTTTGAAGAAGACCAGAAAAGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCCGTCAAAAAGTCCTGAAAGGCATCGCCGCCGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCAGTTCAGGAGTAGGTAAGGCATTGGTCAGAGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCTATAGGCACAATTGTAGGCATACCTCTTACGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCCCTGCAATGGCTAAAGACAAAGGAAATATTGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGCTTTCCTAAAATCAGGGAATGGTTCAAATATGTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC

>CP033931|1|1|1225303-1227043|CRISPRCasFinder
TTATATAAGAAGTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC	AATGTACTGAAGTACCTTTTGAAGGTAAAA
GTTGTGAATTGCTTTCAAAATTTACTATCTTCGTGATTAGTCACAGC	AAAGCCTAAATAGTAGAAGGGTAACCCTGC
GTTGTGAATTGCTTTCAAAATTTACTATCTTCGTGATTAGTCACAGC	TATTTTTTTTACTTCCTTCATGTCTGTTTC
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	AACACACTGCTTAATATGCATGGCCATAGC
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	CAGGTATAATACCACGATTAATAGCCTCTT
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	CTCATTCTTTTGGCCAGCAGCAATGACATT
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	ACAAAAAGGGACACAACGTCACCACCGATA
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	CGGCGGGAACTTATGATGAATTAAGGAAGT
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	TTCTACGGTCTTTGATAGATCGTTAGTTGT
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	CTATCCACAGATATCTTCCACTTATCACCA
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	GATATAGCAAATATATAACATTGTTCATAA
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	ACAACAACAATTATATCATATGTCACACAA
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	GCGATGGACAAATCATTATTTTATACGCTA
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	TAGGGTCCTGTACTAATACACGAGAGCCGT
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	CTCCATTTCCTCGCCTAACAGCCTCTAAGC
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	CAGGATTTGCTGGGATTGCACATACTGCCA
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	GAATTGAAGTTTTTGAAGAAGACCAGAAAA
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	CGTCAAAAAGTCCTGAAAGGCATCGCCGCC
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	AGTTCAGGAGTAGGTAAGGCATTGGTCAGA
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	TATAGGCACAATTGTAGGCATACCTCTTAC
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	CCTGCAATGGCTAAAGACAAAGGAAATATT
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	TTTCCTAAAATCAGGGAATGGTTCAAATAT
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC

>CP033931|1|1|1226304-1227043|PILER-CR
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	TAGGGTCCTGTACTAATACACGAGAGCCGT
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	CTCCATTTCCTCGCCTAACAGCCTCTAAGC
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	CAGGATTTGCTGGGATTGCACATACTGCCA
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	GAATTGAAGTTTTTGAAGAAGACCAGAAAA
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	CGTCAAAAAGTCCTGAAAGGCATCGCCGCC
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	AGTTCAGGAGTAGGTAAGGCATTGGTCAGA
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	TATAGGCACAATTGTAGGCATACCTCTTAC
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	CCTGCAATGGCTAAAGACAAAGGAAATATT
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC	TTTCCTAAAATCAGGGAATGGTTCAAATAT
GTTGTGAATTGCTTTCAAAATTTATTATCTTCGTGATTAGTCACAGC

Protein	Signature genes	Signature genes Name	Protein_function
CP033931.1\|AZB33168.1\|1239350_1239527_-\|histone-H1	unknown	unknown	unknown
CP033931.1\|AZB33161.1\|1223399_1223948_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153228
CP033931.1\|AZB36292.1\|1236236_1237808_-\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349937
CP033931.1\|AZB33159.1\|1222572_1222824_-\|DUF1294-domain-containing-protein	unknown	unknown	gnl\|CDD\|377743
CP033931.1\|AZB33166.1\|1235523_1236156_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
CP033931.1\|AZB33170.1\|1241577_1242489_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378964
CP033931.1\|AZB33163.1\|1227100_1227439_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
CP033931.1\|AZB36291.1\|1228341_1232562_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|375967
CP033931.1\|AZB33160.1\|1222965_1223322_+\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB33153.1\|1214726_1214975_+\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB33169.1\|1239855_1241340_+\|peptidase	unknown	unknown	gnl\|CDD\|226483
CP033931.1\|AZB33157.1\|1219020_1220826_-\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|273597
CP033931.1\|AZB33158.1\|1221051_1222551_+\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB33164.1\|1227435_1228329_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
CP033931.1\|AZB33162.1\|1224137_1224812_-\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
CP033931.1\|AZB33156.1\|1217267_1218881_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224563
CP033931.1\|AZB33167.1\|1237972_1239121_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379297
CP033931.1\|AZB33154.1\|1215144_1216236_-\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
CP033931.1\|AZB33155.1\|1216411_1216963_-\|ferritin	unknown	unknown	gnl\|CDD\|153113
CP033931.1\|AZB33165.1\|1233279_1235403_+\|RNA-binding-transcriptional-accessory-protein	unknown	unknown	gnl\|CDD\|225094

Protein	Function_ID	Function_description	E-value
CP033931.1\|AZB33161.1\|1223399_1223948_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	2.62474e-83
CP033931.1\|AZB36292.1\|1236236_1237808_-\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349937	cd08015, M28_like, M28 Zn-peptidase-like; uncharacterized subfamily. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.	1.65821e-87
CP033931.1\|AZB33159.1\|1222572_1222824_-\|DUF1294-domain-containing-protein	gnl\|CDD\|377743	pfam06961, DUF1294, Protein of unknown function (DUF1294). This family includes a number of hypothetical bacterial and archaeal proteins of unknown function.	4.06963e-17
CP033931.1\|AZB33166.1\|1235523_1236156_+\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	4.78615e-30
CP033931.1\|AZB33170.1\|1241577_1242489_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	3.21149e-13
CP033931.1\|AZB33163.1\|1227100_1227439_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	7.60117e-21
CP033931.1\|AZB36291.1\|1228341_1232562_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|375967	pfam18541, RuvC_III, RuvC endonuclease subdomain 3. Cas9 proteins are abundant across the bacterial kingdom, but vary widely in both sequence and size. All known Cas9 enzymes contain an HNH domain that cleaves the DNA strand complementary to the guide RNA sequence (target strand), and a RuvC nuclease domain required for cleaving the noncomplementary strand (non-target strand), yielding double-strand DNA breaks (DSBs). The crystal structures of type II-A and II-C Cas9 proteins highlight the features in Cas9 enzymes that support their function as RNA-guided endonucleases. Cas9 enzymes adopt a bilobed architecture composed of a nuclease lobe containing juxtaposed RuvC and HNH nuclease domains and a variable alpha-helical lobe likely to be involved in nucleic acid binding. The RuvC domain forms the structural core of the nuclease lobe, a six-stranded beta sheet surrounded by four alpha helices, with all three conserved subdomains (I, II, III) contributing catalytic residues to the active site.	8.36423e-55
CP033931.1\|AZB33169.1\|1239855_1241340_+\|peptidase	gnl\|CDD\|226483	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only].	1.08867e-26
CP033931.1\|AZB33157.1\|1219020_1220826_-\|translational-GTPase-TypA	gnl\|CDD\|273597	TIGR01394, GTP-binding_protein_TypA/BipA_homolog, GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors].	0
CP033931.1\|AZB33156.1\|1217267_1218881_-\|hypothetical-protein	gnl\|CDD\|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	1.33963e-60
CP033931.1\|AZB33167.1\|1237972_1239121_-\|hypothetical-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	0.000106601
CP033931.1\|AZB33162.1\|1224137_1224812_-\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	2.85545e-30
CP033931.1\|AZB33164.1\|1227435_1228329_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	7.66849e-95
CP033931.1\|AZB33154.1\|1215144_1216236_-\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
CP033931.1\|AZB33155.1\|1216411_1216963_-\|ferritin	gnl\|CDD\|153113	cd01055, Nonheme_Ferritin, nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.	9.78275e-69
CP033931.1\|AZB33165.1\|1233279_1235403_+\|RNA-binding-transcriptional-accessory-protein	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0

>CP033931.1|AZB33162.1|1224137_1224812_-|YceI-family-protein
MKKISVIALVAVGLMAASCTNKEKTETSVATEQTVAEGKGEALTVDTAASVVNWKAFHKGGFAPRWGTLNVKSGDLNIEGGQVVAGNFNIDMTSIKVDPASVTEKDKKPADLEAHLKNPDFFDVAKNPTSDFKITSVADLKEAPKDAVAGANKTVSGNLTLMGKTMNVTFPAKVDVADNTAAIQAKFTVNRTDWGIKFGTSEADPAEWMISKDIEIAIDVKAKK
>CP033931.1|AZB33161.1|1223399_1223948_-|type-1-glutamine-amidotransferase
MSKKIAILATNGFEESELQSPKEYLEQQGWTAHIVSPEAGTIRSWAEKDWGKDYHVDKTLDEVTASEYDALVLPGGVINPDQLRTNGQALSFVRDFFIQNKPVAAICHGPQVLINAKVVNGRNMTSVKSISKDLINAGAHWEDKEVVVDNGLVTSRTPKDLPAFNAKMVEEFKEGKHAGQAL
>CP033931.1|AZB33160.1|1222965_1223322_+|hypothetical-protein
MTVHDLAGSYSIKGSNQEASEQVSYHGTLILSVDENARIIARWIIGDHIQNGTGFYKDRILVLNFNYEGDDQKIYKGVAVYRCLSQDILDGFWSEKHGNPLYLGSEYCVRIQNSWIFN
>CP033931.1|AZB33159.1|1222572_1222824_-|DUF1294-domain-containing-protein
MIPFLLIANFITFGVFGFDKLQAKRQQWRVSENALLGLSLIGIIGAASGMIVFNHKVSKKSFLVKFFLVVLIDVILLYRLIRH
>CP033931.1|AZB33158.1|1221051_1222551_+|hypothetical-protein
MTNNLGLLTIKEFIDSQDPALDKEIITLIDHNSGELVNLKKQNTPLPDNGCYLYWTKTNSDESKAYYKRIVTNDISVKITGASGDGNSDDSDKIQQLINEMEIGQVLHLDNKRYMLYKPLQINKAIKITGSSTKSQISFPPFLITHNNDGININTSGVVLEGFGIYNIVWHTTSPNHFTGIRVNGTSDSHMYDILCRDLQIRGYQTALEVNYLWSSQIQTVKTENCQTGILVKGLSVNNEISNNTSISIHEAYDIPDSRGIWFEGSAPKEGWRIIDTFIFNVYEGIYAEKTSHVNVFNSMIDFCRHIGIVIAEESYNWNINSNYIALSHPGYGVYLANDINNSLFTRGNKIIDNDILIYNHQKQDDISIGINIVGKGSLYDDVRGNSIKNFKVCDIKADPGLQTTITHNKCLSEINPNIIGNFITNDNLGTVYYQNANDALYLGKLKITYADHYPPVSSPEWKRGDIILNTNPTADKPIGWVNTTDGTNTWKPFGIINN
>CP033931.1|AZB33157.1|1219020_1220826_-|translational-GTPase-TypA
MQNIRNIAIIAHVDHGKTTLVDKIIHATNIFRENQESGELIMDNNDLERERGITILSKNISVTYKDTKINVIDTPGHADFGGEVERVLKMADGVILLVDAFEGPMPQTRFVLQKALELGLRPLVVINKVDKPNCRPDEVHDQVFDLFFNLEATEEQLDFPTFYGSSKQGWFNTSLEQTEDILPLLDGILQYVPAPTVTEGNLQMQITSLDYSSFLGRIAIGKVTRGEIKESQWIGLAQADGKVLKGKVKELYVFEGLGKKKVTEVQAGDICAVVGFDAFQIGDSFVDLENPEPLERTAIDEPTLNMTFSINNSPFFGKDGKYVTSNHLKERLTKELEKNLALRVQQTDDANTFLVFGRGILHLSVLIETMRREGYEMTIGQPQVILREIDGVSCEPYESLVVDVPEEYASRVIDLATQRKGDLHIMETKGEMQHMEFEIPSRGLIGLRSQMLTATAGEAIMAHRFTEYKPFKGAIPGRNNGVLISKTTGPATEYSINKLQDRGKFFVDPGEEIYTGMIIGEQNKPGDLVVNIVEAKQLNNMRAAGKDKDTGVAPKILFSLEECMEYIQADEAIEVTPNFIRMRKKILSEEERKRVERSAKA
>CP033931.1|AZB33156.1|1217267_1218881_-|hypothetical-protein
MKMSKLKLIVLLGVLASYSTSCSTQNNVTKTPPVKNTTKPNPNNNTTQPKPPVAVKPATGNSTDETFRTNLPEIKREFRGAWIASVANINWPSKNNLTVEQQKAEAISMLDMLKDNNFNAAIFQIRPSADALYTSNIEPWSYFLTGETGTGPYPSYDPLLFWIEEAHKRGLELHVWLNPYRAHHTNGGTVNKMSMANRMSDIVVRLKNGMYWFDPANPKTQDHVSNVVKDIVKRYDIDAIHFDDYFYPYATYNKGADFPDYATWSAYQNSGGTLSRADWRRDNVNRFVERIYKEIHAEKNNVKFGISPFGIWKPGYPAGIVGSSQFDELYADAKLWLNKGWVDYFSPQLYWPIDSKGQGFEALLNWWQSENTMNRHLWPGLNTVEIKTYDRPTEIKNQIEISRKILKNDAGEIHWSIAGLTRNPGMLPALKNGPYSEKALIPKSPWIKTVPLQTPTLFIADNGSYAQTRWSSKNASEVFQWVLFSQYDGVWEIEILPLDTLFKDVPKFKNGKKLNAVAIKAIDRLGNESDYMAKKVK
>CP033931.1|AZB33155.1|1216411_1216963_-|ferritin
MNTNRLSATVEKALSDQMNKEIHASHVFLSYGIWADDKGYQGIANFLYRHAQEERNHSIKFMEYILNRGGKPKIEAIPAPPADPESLTACFEGVFKHEVDNTTAIYKIVDLSMAEKDWATWNFMQWFVQEQIEEETLALNLIDKLKIAGGDRATDESLFTLDKTLQEAPNDVPLAQEATGDNP
>CP033931.1|AZB33154.1|1215144_1216236_-|redox-regulated-ATPase-YchF
MKCGIVGLPNVGKSTLFNCLSNAKAQSANYPFCTIEPNLGTVSVPDQRLFELEKIVKPERVLPAVVEIVDIAGLVKGASKGEGLGNQFLANIRECEAIIHVLRCFDNGNIVHVEGSVDPLRDKEIIDIELQLKDLETVGKAVEKAKKFIKSGKKEDILTYETLQNLQKFLEDGKNAREFAVDDLTKSIIGDVQLLTNKPVLYVCNVDENSIKNGNEWIGKIEEMAQNEGAEVVVLAAQIEADINELETFEEREIFLDELGLTEPGVNRLIRKAYDLLKLQTYFTAGVKEVRAWTIGQGWTAPQAAGVIHTDFEKGFIRAEVIKYNDYVTYGSEVKVKEAGKLSVEGKEYVVQDGDIMHFRFNV
>CP033931.1|AZB33153.1|1214726_1214975_+|hypothetical-protein
MEKQNLNNGKKLNKKELRTIAGGVKICSYNGVCTQYGPSCYEPACQEGGGGSLRCTDIVNKCVVYSIECVEPKCRFDIGIPL
>CP033931.1|AZB33163.1|1227100_1227439_-|CRISPR-associated-endonuclease-Cas2
MNAERFNAYRIMWVLVLYDLPTETKANMKDANRFRKALIDDGFTLFQFSMYVRHCPSRENAEVHIKRVKFMLPKAGKVAIMCITDKQFGDIEIFFARNKEEPPPTFQQLELF
>CP033931.1|AZB33164.1|1227435_1228329_-|type-II-CRISPR-associated-endonuclease-Cas1
MITRSIYIGNPAYLKLKDEQMKILCPETKTEKGSVPVEDLGLLMLDHYQITISHNLIQKMMGNNVVVISCDAHHLPHGIMLPLYGHTEHSDRVKDQLEASEPLKKQLWKQTVECKIENQKNVLMKLENYYEPMVEYQKNVKSGDITNMEGIAAQHYWKYLISLDFLRQRFGESPNQFFNFGYAVLRSIVARAIVETGLLPVLGIFHKNKYNPYCLADDLMEPYRPFIDLLVMQWLKIYPDTEDLTKEFKAHILQVATRDVRIDDKTRPLLVAVKTTASSLYKCYTGEKRLISYPELI
>CP033931.1|AZB36291.1|1228341_1232562_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKNILGLDLGVSSIGWAYVQEDSKNSENNKIIKLGVRVNPLTVDEQLNFEKGKPITTNAGRTLARSARRNLQRFKLRRVNLIDVLKKNNILKESDLLAEVGKNSTFQTQELRAKAAKEKIELSELARVLLLINKKRGYKSSRKAKNEDEGQIIDGMAVAKKLYEENITPGEYSYQLLQQGKKQLPDFYRSDLQAEFDKVWNFQKQYYSEILTDDLYKELQGKNKNTTWVILKEPFSLVGIKQSGTMQEKKVEKYFWRSEAVKKQLDFESLAVVFQEINSNLNNSSGYLGAISDRSKELYFHNQTVGEYLFQQLKANPHTKLKNQVFYRQDYLDEFEKIWETQSKYYKELTKELKEEIRDIIIFYQRKLKSQKGLISICEFENREIEVIENGKTKKKTVGLKVAPKSSPLFQEFKIWQVLNNLQFQNVDTKEIFPIDLDFKQSIFNEVNIKGKLSAKDVLDLVGYSGKEWKTNFKEIEGNYTNENLYSAFLKIIASEGTEFPKEFKLTIDDEIKVSKVNASAEIIKLFVREKFSGLGIDTSILDFNTELEGNDFEKQASYQLWHLLYSYEGDDSPSGNEKLYELLERKFGFKKEHSKILAEIGFSQDYGSLSSKAMRKIYPYIKEHKYSVACNYAGYNHSKNSLSKEQLENRILKEQLDILPKNSLRNPVVEKILNQMINLVNEVSKEYGKPDEVRIELARELKLNAEERATMTSEINKATIQHQKYAEVLQREFGIKSPSRNDIIRYKLYLELSTNGFKDLYTNKKIEKENLFTDKYDIDHIIPQSRFFDDSFSNKVLVPRGANQDKDNYTAIDYIEKKFGDKGKEEFLNRINLVLKSKEAIAGKSDSQISSMNSKFLKLQKKGSEIGEGFIERDLRNTQYIAKKAKEILFGITNSVVSTSGRITDKLREDWNLVNTMKELNIEKYRKLGLTELIANSKGEEKERIIDWTKRNDHRHHAMDALTVAFTTHNHIQYLNYLNARKNEEHKEHKIITNIENNITEVLEKKNGSKERRFKEPVKNLRTEAKKHLDEILISHKAKNKVVTKNINRIKKKGSVIAKTELTPRGQLHKETIYGSSKFLKTKEEKISGKFDVETIQKVQNEKYRNALLKRLQEFGGDSKKAFTGKNIISKNPIFLNAEKTEQLPETVTLAWYETGYTIRKVVNPDNFKDFKNIEKVIDKEVRDILTERLKEFNGNSKEAFSDLEKNPIWLNKSKGISIKTVTITGINNAEALHYKKDHLGKDILDENGQRIAADFVSTGNNHHVAIYEDEKGNLQEKIVSFYEAVERVNQNLQVIDKEYNSQLGWKFLFTMKQNEMFLFPSEDFDPKEVDLSDDKNLSLISKHLFRVQKIATKDYFFRHHLETTVEDNSVLKGITWRREGLSGLKGILKVRLNHLGRIVQVGEY
>CP033931.1|AZB33165.1|1233279_1235403_+|RNA-binding-transcriptional-accessory-protein
MTTVEFIQKQLDISEKSINNTLQLLAEDCTIPFISRYRKDKTGNLDETQIEQISKISKQFEEIVKRKESILKSIEEQGGLTPDFQQRIEESFDIQELEDLYLPFKKRKKTKADAAKEKGLEPLAKIIMSQKNNDVQFLASKYLSNEVPSEEDALQGARDIMAEWINENMYVRKNLRRLYQRKAVVTSKVVKAKKDEEDAQKFSQYFEWEESLSRIPSHRLLAMLRAEAEGFVKTNVGIDKEEAIDFIEKAIIKSDNESSGQISLAIKDSYKRLLEPAISNEALQEAKEKADKKAIEIFSENLSQLLLAPPLGEKRILAIDPGYRSGCKVVCLDEKGDLLHNETLYPHAPQNESGMAMKKIRSMVNAYHIEAISIGNGTASRETEFFIKKIAFDKPLQVFVVSEAGASVYSASKIARDEFPSYDVTVRGAVSIGRRLSDPLAELVKIDPKSIGVGQYQHDVDQTQLKNELDSTVMKCVNSVGINLNTASKSLLSYVSGIGEKMAENIVNYRAENGAFEDRKQLKKVPRLGEKAFQQAAAFVRVSNSKNPLDNSAVHPEAYGIVEKMARDLGIKTLELIANKEKIALIKPEDYITGDIGILGIKDILKELEKPGLDPRKAAKVFEFDPHVKSIKDLKAGMILPGIVNNITAFGCFVDLGIKESGLVHISQLKDGFVSDVNEVVKLHQHVRVKVTEVDEARKRVQLSMIL
>CP033931.1|AZB33166.1|1235523_1236156_+|HAD-family-hydrolase
MNYKNLIFDLDGTLWDSRATIIKIWNDVLSKHQLIEQELKPEDMNQYMGLLAHDILKDMLPGISDLQIQELLSEVVTRENEVLGVQGGILYPGVEETLKSLTHTHNLFIVSNCQNGYIESFLEYYQFENLFADFESHGRTQKHKAENIQLLMERNGLSIGNSVYIGDTQTDYDSAASNNLPFIFCEYGFGKLIHQLETKISVFSDLKKYI
>CP033931.1|AZB36292.1|1236236_1237808_-|M20/M25/M40-family-metallo-hydrolase
MRINRFFAVPAVMLAAQFSWAQVKVDPKENLNPIVKSFVDEVNNNSQLEGMAYELLDGIGPRLVGTPEMLAANEWSAEKLRSWGIEANLQQFGTWKGWQRGTTHVDMVFPRVKSLSATQLAWSPATRKAVEAEVVILPKVSSKAEFDKWLPSVKGKIVLMAQYQKIGRSDEQIKEFATPELYEKLKAEKEQAAKDFTAYVKNIGYDNNTLPEALENAGAAGIAISNWTGIMGANRIFGAKTSKIPMIDIDVEDYGMLYRMAEKGAQPKIKIDAQSKVLPEAKSFNTIGMIKGKEKPDEYVILSAHLDSWDGAQGATDNGTGTLTMLEAMRILKKYYPNNKRTIVIGLWGSEEQGLNGSRGFVADNPQIIKGTQAAFNQDNGTGRVINISGQGFVKAYDYIGKWLDGVPKAVRSHIKTDFPGMPGGGGSDHASFVAAGVPGFSLGSLNWGYFGYTWHTTKDTYDKIVFDEVKNNVILTAALAYMASEDPEFTNREKRVMPKDDKGNTIQWPEVKEPKRSSKDYK
>CP033931.1|AZB33167.1|1237972_1239121_-|hypothetical-protein
MKHSHLLFILFFNFFSAQKLQVVDSENGKPIPNARIILQNQIVYTNEEGLAPVDQSSINFEVSASGFRKVTIQEFYSPVKLKRGYKKIDEVKLIKVDLKDIFEDVAANYKKRYYTEPSLYDVIYKEKRSDNNQIHFLVIAETKLWSKTNFYNHNRSFDNNLQMQLNNVKYFKDLKSDSMFVKGTKNFSKEYMGNYFFNFELNRALTHIKNKASKYSGWIFFEQGDEQLITFNIKSGAGIEMKGEMKYNKADKVITYFEIHYLQDQYPIVKRRTGSGEEFDYQLGNAILTFDFYKNGGVYVPAMSRIEANKYIAYYKGIKHERKISRELIYNTFKKSDEKGLAPRVDFSKDIWDNISVKENKNNTILLTREEQVFVDKKLPDF
>CP033931.1|AZB33168.1|1239350_1239527_-|histone-H1
MKELIEKINAEFEAFTTEANQQAEKGNKAAGTRARKAALELSKLFKDFRKVSVEESKK
>CP033931.1|AZB33169.1|1239855_1241340_+|peptidase
MFKNLVFLIFILPFMAYSQNKISYKVYYDENLAKNGLKVQVDYTLRKASDTLSFYYTNENWDENDLFKNLVLLQEENPGIKFKMEPENNRVKLHQKKGTQFTLVYHIKQDFTDPNYKIFNRPRINNTFFHVLGKSLFMVPFSFTKMPDEQEFEFSVEWMNFPEKFGLHNNFASQIHKQKIKTILWDGFYNSLFIGGDYRFYSFTIHDKPVYFALRGDWNNGFTDDFLFSNLKKAVQSQRDFWKDYDKEYFTITMTPTVSQKDSLYKGYSTTGSAIKNAFMIQGTNNPFNNKNSYLYLFHHELMHEWIGNAIQNKHEELNYWFSEGFTDYYTYKNRLRIKDISMDEWKKLFNAEVIKSHWKNPERNIPNYRIKDDFWKSRNVEKVPYRRGAIFAFWLDNQIMLKTQYKRSLDDLMREVLKTCREKKVKFTDELFLEFVQKYLNQDLSYFFQKHILNGEDIDLTKEKWIDGFSFQITDGIPQLEVDESKNIKYLIE
>CP033931.1|AZB33170.1|1241577_1242489_+|AraC-family-transcriptional-regulator
MSDQLETIKDYYRRTRRSILKVSDADLETGKTHFNIIPRKYCSFKSPYNRRDYYKICFIIGKGTAHYGSHTVYVDRPALFLPSPNIPYTWECEDNFQEGFSCLFNQEFFNVNSEFNLFKKTSLFKEWSKPFIFLDDEQIQLATMYFEQMYKLNHSTYPFRCSGIKSNLASVLHLALQNRVEDVSLNELPANVRLYRLFDELLNKQFPLDSPAYPLALKTASDFADHLNVHVNHLNSSVKSVTGLTTTHIIKEKIFEESKNLLKYTNWDIAQVGYTLGFEQPSHFNNFFKKHAETSPLKFKNSF

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Crispr_ID: CP033931_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033931_2

3201453-3201551

Orphan

Consensus_repeat	Method
TTTATTATCTTATTGAAAATGATTAAGTTTGTTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033931_2

>merge|CP033931|2|3201453-3201551|CRISPRCasFinder
TTTATTATCTTATTGAAAATGATTAAGTTTGTTATTCTTAAATGACTTTATTGGCAGAAAAAAATTTATTATCTTATTAAAAATGATTAAGTTTGTTAT

>CP033931|2|2|3201453-3201551|CRISPRCasFinder
TTTATTATCTTATTGAAAATGATTAAGTTTGTTAT	TCTTAAATGACTTTATTGGCAGAAAAAAA
TTTATTATCTTATTAAAAATGATTAAGTTTGTTAT

Protein	Signature genes	Signature genes Name	Protein_function
CP033931.1\|AZB34725.1\|3204391_3205276_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133027
CP033931.1\|AZB36402.1\|3203469_3204387_+\|lipopolysaccharide-heptosyltransferase-family-protein	unknown	unknown	gnl\|CDD\|340821
CP033931.1\|AZB34715.1\|3192205_3192949_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225818
CP033931.1\|AZB34726.1\|3205662_3206907_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
CP033931.1\|AZB34724.1\|3202999_3203419_+\|SufE-family-protein	unknown	unknown	gnl\|CDD\|376883
CP033931.1\|AZB34716.1\|3192995_3194264_-\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB34714.1\|3191877_3192141_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379083
CP033931.1\|AZB34722.1\|3201565_3201790_+\|uroporphyrinogen-decarboxylase	unknown	unknown	unknown
CP033931.1\|AZB34717.1\|3194399_3195296_-\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB34730.1\|3210122_3210788_+\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB34719.1\|3196148_3196502_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275063
CP033931.1\|AZB34720.1\|3196586_3197774_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
CP033931.1\|AZB34728.1\|3208414_3209005_+\|transcription-elongation-protein-SprT	unknown	unknown	gnl\|CDD\|179886
CP033931.1\|AZB36401.1\|3198816_3201351_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616
CP033931.1\|AZB34718.1\|3195408_3196128_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226728
CP033931.1\|AZB36400.1\|3191569_3191857_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|379083
CP033931.1\|AZB34729.1\|3209037_3210090_+\|mannose-1-phosphate-guanylyltransferase	unknown	unknown	gnl\|CDD\|133003
CP033931.1\|AZB34723.1\|3201789_3202902_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340825
CP033931.1\|AZB34721.1\|3197975_3198503_+\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB34727.1\|3207090_3208413_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455

Protein	Function_ID	Function_description	E-value
CP033931.1\|AZB34725.1\|3204391_3205276_+\|glycosyltransferase	gnl\|CDD\|133027	cd04184, GT2_RfbC_Mx_like, Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.	4.21217e-11
CP033931.1\|AZB36402.1\|3203469_3204387_+\|lipopolysaccharide-heptosyltransferase-family-protein	gnl\|CDD\|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	1.85951e-34
CP033931.1\|AZB34715.1\|3192205_3192949_+\|DNA-binding-response-regulator	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.26756e-31
CP033931.1\|AZB34726.1\|3205662_3206907_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	1.45266e-120
CP033931.1\|AZB34724.1\|3202999_3203419_+\|SufE-family-protein	gnl\|CDD\|376883	pfam02657, SufE, Fe-S metabolism associated domain. This family consists of the SufE-related proteins. These have been implicated in Fe-S metabolism and export).	2.45466e-63
CP033931.1\|AZB34714.1\|3191877_3192141_+\|hypothetical-protein	gnl\|CDD\|379083	pfam13239, 2TM, 2TM domain. This short region contains two transmembrane alpha helices that are found associated with a wide range of other domains. This domain may be involved in cell lysis or peptidoglycan turnover.	1.18431e-06
CP033931.1\|AZB34719.1\|3196148_3196502_+\|hypothetical-protein	gnl\|CDD\|275063	TIGR04222, integral_membrane_protein, TIGR04222 domain. The majority of the proteins with a domain as described by this model have an extreme C-terminal sequence that is consists of extremely low-complexity sequence, rich in Ser or in Gly interspersed with Cys. That C-terminal region resembles ribosomal natural product precursors, although there is no evidence that C-terminal regions of these proteins undergo any modification or have any such function.	1.88738e-05
CP033931.1\|AZB34728.1\|3208414_3209005_+\|transcription-elongation-protein-SprT	gnl\|CDD\|179886	PRK04860, PRK04860, SprT family zinc-dependent metalloprotease.	5.34869e-06
CP033931.1\|AZB36401.1\|3198816_3201351_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
CP033931.1\|AZB34718.1\|3195408_3196128_+\|hypothetical-protein	gnl\|CDD\|226728	COG4278, COG4278, Uncharacterized conserved protein [Function unknown].	3.12634e-34
CP033931.1\|AZB36400.1\|3191569_3191857_+\|histidine-kinase	gnl\|CDD\|379083	pfam13239, 2TM, 2TM domain. This short region contains two transmembrane alpha helices that are found associated with a wide range of other domains. This domain may be involved in cell lysis or peptidoglycan turnover.	2.57481e-31
CP033931.1\|AZB34729.1\|3209037_3210090_+\|mannose-1-phosphate-guanylyltransferase	gnl\|CDD\|133003	cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.	3.18921e-123
CP033931.1\|AZB34723.1\|3201789_3202902_+\|glycosyltransferase	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	2.23388e-22
CP033931.1\|AZB34720.1\|3196586_3197774_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
CP033931.1\|AZB34727.1\|3207090_3208413_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	2.29231e-47

>CP033931.1|AZB36401.1|3198816_3201351_-|ATP-dependent-Clp-protease-ATP-binding-subunit
MDYKFSQGLSQVFKQSKSEAKRLKSEFLNTEHLLLGIIKTENSAKEILQNLNADLTQIRRKIETLNTASLNPISEEVTNISFTKMADHAIKRAELECRQYKSNEINTVHLLLGILYKYEDPTSNILGAYDIDYEGVSREYQTMLKNSGQSPQMSAYDDDDEREEFEQMRKPTGNLGSAKSKTPTLDNFGRDLTSLARDGKLDPVIGREKEIERVSQILSRRKKNNPLLIGEPGVGKSAIAEGLALRIQQKKVSRVLYGKRVITLDLASLVAGTKYRGQFEERMKAIMTELEKNRDVILFIDELHTIVGAGSSTGSLDASNMFKPALARGEIQCIGATTLDEYRQYIEKDGALERRFQKVMVEPTSIEETIQILNQIKDKYEEHHNVIYTPEAIAACVNLTSRYITDRFLPDKAIDAMDEAGSRVYIKNMKVPTEIIDFEKKIEEIKELKQKAVKAQDYLEARKLKDEEERLQMELNAAQEKWDKDVKEKKETVTEENVAEVVSMMSGVPVTKVGKNELDKLANMDGKLNGKVIGQEDAVKKVVKAIQRNRAGLKDPNRPIGTFIFLGTTGVGKTELAKVMARELFDSDEALIRIDMSEYMEKFAVSRLVGAPPGYVGYEEGGQLTEAVRRKPYAVVLLDEIEKAHPDVFNILLQILDEGHVTDSLGRKIDFRNTIIILTSNIGTRDLKDFGDGVGFGTSAKKSTSDTRARSTIENALKKAFAPEFLNRIDDIIIFNSLVQDDIKKIIDIELNKLYGRLEKLGYKVELTDEAKDFISEKGWDKDFGARPLKRAIQKYIEDLLAEMLVNKQLNEGETVVLDLNEAKDGLVGKTSKPKKSSAAEKSS
>CP033931.1|AZB34721.1|3197975_3198503_+|hypothetical-protein
MKKFIISMMLIVSGSAFSQVSIGTPVQENNRWTFGGGIGLGFGSNSSFYLQASPRVGYRLTEDLEAGAVGSVSWQTSDYYRSTMFGIGPFANYYIARSFYLSANFQHYFINYKDKYYDYKYNREENALYLGGGYMQRIGNNSFMQIGLMYNVLWKENSSVFSNGLVPNIGFVVGL
>CP033931.1|AZB34720.1|3196586_3197774_-|tRNA-2-thiouridine(34)-synthase-MnmA
MKIVVGLSGGVDSSVTAYLLQQQGHDVVALFMRNWNDASVTLEDECPWIEDSNDALMVAQKLGIPFQVIDMSELYKERIVDYMFAEYEKGRTPNPDVLCNREVKFDVFMKTAMSLGADKVATGHYARVHSTIDENGKEIFHLLAGKDNNKDQSYFLCQLSQDQLSKALFPIGELTKPQVREIAKEIGLVTADKKDSQGLCFIGKVSLPQFLQQQLKPNEGEIVEIFKDSPLFAEETPEFSTKEEELQFLSRKINYKKADGKVIGKHQGAQFFTIGQSKGLGIGGHKESCFIVSRDMENNILFVGEGSHFPGLYKKALKIDNSELHWVREDLKLQNGETMEVMARFRYRQPLQKATLYQFEDAFYIEFEEPQSAIAEGQFASWYIDEELIGSGVIS
>CP033931.1|AZB34719.1|3196148_3196502_+|hypothetical-protein
MKKLIIHSIPVVISCIWLVAEFQTFNPITLKGPEFLKFYSILIVGFYISIFIVKSRKEIISRVTIYFTILILGVGIIKLIRGIILGKPIGFLVMILMAESIAVFLLMSWKLNDKIKQ
>CP033931.1|AZB34718.1|3195408_3196128_+|hypothetical-protein
METKMLLKDESLWNRIQGFSLDASDADFPFSKKLAKEENWSLEFTRKAIEEYKKFVYLCCILPKGASPSEIVDKVWHLHLIYTQNYWEEFCPKILKRPLHHHPSKGGFNEKLKHQNWFTDTLKSYQDIFQAEAPRDIWLNRNTIDKTKNKLRIGKFIPFLMLILLLTSCLGEVITTIGSIFFSFVGILVFGGIIASIKKFKDKNDGNSDSSCGGSSCSGGSSCGGGCGGGCGGCGGCGG
>CP033931.1|AZB34717.1|3194399_3195296_-|hypothetical-protein
MKKDDILHLEKLMNFLSRQFLKKNHWEDVTKTEWSYICAELNELIITEYSEKEIKKKPDLLGNNYLYEHLIINKLKKFRQNENAVLSRPNLAKLSLIVKVLGYSNYIDFINSNTESFNFNDLKIDMNNVKPNITLLERLVGCWYSYNRNLPENPTQAREDRIWRSAMEIYKSETTGEYFIERSGGDHHKYFGKVTAYSDYVFIIMNSNTFIRQRHFISRIKDSKEKLKNPDYKLHELHFISTCISFNQEPIALFEIFRKADRKNFISDSISFPIDSDEIPESILKQLEDTESNRIDYR
>CP033931.1|AZB34716.1|3192995_3194264_-|hypothetical-protein
MEYYELYDVLKSHFDSRKGIVKIKDLNVTIESIPFESRVCHLAYGSDNTDCTEHHQPLKINENAYLIYHQPSIDIKDFDIECNKRFEYHILKRADVETANGCIIFFHGLNEKKWDKYLPWAYELAQKTGKAVILFPTAFHMDRAEAIWSDRHQMTEIVKFRKEKYPENTHFSYVNAATSSRLEAHPQRVFWSGLQTYSDIIEVVKDIKSDKIKGISPDASLDLFGYSIGSFLSMIIKMADPHGFFTQSKVFCFCGGMTIDRMFPISKYIMDSQATIKMQSVFTELLSSDFKYDNRLKHYQDDELHPQESWFKKMLRYNYFQKEREERIHEIQSQIKAYVLEKDSIAPPMEALNTLRGGYRNINVDVEIRDFPFDYSHMVPFPLTHKHKTEITEAFHQFIKSASDFYSRPSGVENGEEKPEKK
>CP033931.1|AZB34715.1|3192205_3192949_+|DNA-binding-response-regulator
MIKTVIIEDEKPASRKLERMLGSFPDIEVVAKIESVEEGVAWFSENEHPQLIFSDIVLGDGLSFDIFEKVPTKGFIIYTTAFDQYTLKAFKLNSIDYLLKPILEEDLSGAIEKFKSFLPSNSDIGSQDIKQLIRKEKSILSRVLVKIGYNLKIVQTQEISCFFSENKIVYLQTDERSYPSDFTLDELADILDDKKFFRVNRQFIINSDYIKNIHTSPYYKVDLEFQPQEEITVSRDRVKDFKDWLVS
>CP033931.1|AZB34714.1|3191877_3192141_+|hypothetical-protein
MDYNNAYNRVQQLKKFYKNLMWFGIVSAIIIGNDWFNDELHYRIFGGHLFLAIWALFLGIKAVSLFIFNDEWEKEMMRKETQKIKKQ
>CP033931.1|AZB36400.1|3191569_3191857_+|histidine-kinase
METFKETTAYERASKRVKDLKEFYGNLTSFCIVIPFLAFLNLMTAPGYLWFLWPMFGWGIGVVFHAVNVFGIGKNWEEKKIRELMAEEKGKTKTL
>CP033931.1|AZB34722.1|3201565_3201790_+|uroporphyrinogen-decarboxylase
MNPEITTYIGYSASVFIVLSFILKDVRKIRVVNMIGCICFVIYGFFSGPLWPVIIPNGLICFIQVYHLLLGKKA
>CP033931.1|AZB34723.1|3201789_3202902_+|glycosyltransferase
MKKKIIISAFSNLYTDQRIEKICRTLYENGYEIDLIGNDWNGAEEIQRPYSFSRIHLASKSLKTAYLEFNWKLYHILKKKADRNTILHANDIDALYPNYLIARKLNIPLVFDSHEIFSEMPAVQGKMSQKLWRYVEKTVIPDLKWMITASGSYGKWFEKKYGIDPVIVQNAPREIGFTDDLPENNPKILLYQGAVNPFRGIDKVILAMHYLDHVQLKIAGDGPRKKEYEELVIREKLEHKVQFLGKLKPEDLRKVTLTADCGMSIEENGGESYLYSLPNKVLDCIQARVPLILSNLPELKNIKDQFDVGELIKDHQPENIAAAVNKVLAKGRGNYQLELEKAAKVLRWENEEIKLLQVFRKASNASGFKG
>CP033931.1|AZB34724.1|3202999_3203419_+|SufE-family-protein
MTIKEKQQEIIDEFAFLDDWEQKYEYIIDLGKELKGLPDDKKTEENLIKGCQSKVWIDAEFKDGKLFFNADSDGILPKGIVSLLVSIYSGHSTQEILDSDFEFISEIGLQEFLSPSRANGLMAMTKQIKFYAVAYQLKS
>CP033931.1|AZB36402.1|3203469_3204387_+|lipopolysaccharide-heptosyltransferase-family-protein
MTVPVFKEFLEQNPGVEIVMVSRKNFEALFAGIPNVIFKGINVDDYKGFFGLRKLGDELIKEFKPDYIANLHDVIRTKILDRIYRRKGLKVFKIDKGKEEKEHLTDVWNLNKVQLKKTVERYADVFREMGFKVELSQKLRPVSEHKSGIGFAPFAQHKGKMLPLEKSFELARLLAQKHTVYFFGGGKKETETLESWESKIPNTKSLSGKLSLTEELQKISELEVMISMDSANMHLASLMGTRCVSIWCETHPYAGFLGFGQSEEDVVQVKDLSCRPCSVFGDKECYRGDWACLEEFTIQKVIEKI
>CP033931.1|AZB34725.1|3204391_3205276_+|glycosyltransferase
MKLSICIPVYNFDVRELVFDLKKEIDSQKIDAEIILIDDASDTAFKSINEELQDQVEKLVFLNKNIGRSRIRNLFLQYSLGEYLLFLDCDVKIPGKRFLWNYISEINKHPDLELIYGSFTIDPKYTSTLRNRYSVEREIFSGNRSYDFALFKTVNFIISKKILEKFPFDETLTEYGYEDFVFAKLLEQNEIKFLAMANPVIHIDDTNNAVFLGKAEIGMESLFRLSKNPINKAFIKDIKVYKAAVILKRLGLIPLFLSIYKILEEKIRTNLLSGNPNIWYFDFYKLNVLARKMK
>CP033931.1|AZB34726.1|3205662_3206907_-|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase
MTNEQYQEAIDWLFVQMPNYQIDGQKAYKPGLDNITKLCAYFGNPQDKIKCIHIGGTNGKGSSSNMLASVLQEAGYKVGLYNSPHLIDFTERIKVNGKNCHKEFVFDFIQKLKNIPEDIRPSFFEFTTIMAFEYFYQQQVDYAIIEVGLGGRLDSTNIIKPLASAITNVQLDHQNILGDTIEEIAAEKAGIIKKSVPIISGDENEAVKAIIREKAMKEEASFIDATLLHTDLASDLKGNYQRKNIRVVLSIIEELRKQGINITDKNVENGLLNVHKNTGFIGRWFEFSKDPLTICDTGHNQAGLEYVFSQLNSINRRKHVILGFVNDKKIDEVMNLLPENSEFYFAKPSINRGRHPEDYEKLLQEAKIFYKIFNSVQEAYLSAKERCTSEEMIFIGGSNFIVGDFLEKNLEFKE
>CP033931.1|AZB34727.1|3207090_3208413_+|TolC-family-protein
MKKVWIIVFGLGSLGLSAQKKWSLKECVSYAVEHNLQVIQNQYTKQNQEYNLKAAKKDYLPSVSGSMMNGVSFGQGSLGAGSYRNDRFNNSVGVSADVLVYNNGRLEKNVRKLQFDVEASQYDIEAIKNDISVQIAQQYLTALLNKEIVKISQSAVENAKKQYDRAKITTQVGTTAQTVLAEAEAALAREKQNLKTAEVNVGRALFAIAQLLQLSDYKDFDVENVDVPEALDSQLVTADEVLTKAYDVQPQIKAAESRIRSAEAQTEVSKTAFWPTLTASAGLNTFYNKSFNVPPGVVQGTFFEQYKDQFGQNVGLSLNIPIFNKGKTKLQVEQSKLNESVSKISLEQQKQAVRQNIQKAQFDADANYESYLAALEAEKSSKLALDFADKSYAAGKTTIYDVNVARNNYANAQGSVAQAKYNYLFSLKLLNFYAGIPLSL
>CP033931.1|AZB34728.1|3208414_3209005_+|transcription-elongation-protein-SprT
MSIQSLEKYLPQNTLKYLRIWFSDYYIHIKVTRNRNSKLGDYRKLPDNSHEITVNSTLTPQLFFFVLTHELAHMIAFEKYGRRISPHGNEWKETFRNMLLESLEIYDEDLKPIIVKFSKSPKANFMASPDLVRYFHTEKQDDRLYFIEQLQKGEFFIYRNEKYLLEGLIKKNYLCKNLATGRKYSFKPLARVEKCS
>CP033931.1|AZB34729.1|3209037_3210090_+|mannose-1-phosphate-guanylyltransferase
MAGGIGSRFWPMSTQKFPKQFQDILGTGRTMIQQTYDRISKIIPKEHIFVITNKEYVALSHQQLPEIPEENIVGEPLMKNTAACNLYMANKIAEINPNATMIVLPADHLILKEDVFLEKVMLAFDLASKHDYLVTLGITPTRPDTGYGYIQFVEKKNSEYFKVKIFTEKPILEIAQSFLESGDFLWNAGIFIWNIKSIQHAFEMYLPEMTQHFMACEYNSEKENSCIETIYPKVQKISIDNGILEKAKNVYVIPSDLGWSDLGTWTSVYENTEKDKDGNAVKLKHLLAYNSKGNIIRLKNSNKAVIIDGLENYIVVDTDKALLICPRDNDQLIKDYVLDLKNFKKGDKFM
>CP033931.1|AZB34730.1|3210122_3210788_+|hypothetical-protein
MIKFALRFTTLILLLFTILGYAQDKKKFSSIPNILQRIEPGANVDSWVLVYNNYGKGEEIKISGGKINYTPQFSGFNLFPSEDSFYYIAYSSGGKINYILDTEALKTFVGKIDNAQEAAIILAADGYMVDEEFKDLAGNYHEDQKNYYLDLGKLTSQECPYQKTHYTLTVNKATGLVTNVKDNGTYIELYNKKCANNPRLLKVEKKEEPKKDESSKTSKRR

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Crispr_ID: CP033931_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033931_5

4453977-4454057

Orphan

Consensus_repeat	Method
TTCGGAATTGCACTCATTCCAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033931_5

>merge|CP033931|5|4453977-4454057|CRISPRCasFinder
TTCGGAATTGCACTCATTCCAAAATCTGGTTTTTTTCGGATTTGTGCTCATTTCAGTTTCGGAATTGCACTTATTTTAAAT

>CP033931|5|5|4453977-4454057|CRISPRCasFinder
TTCGGAATTGCACTCATTCCAAAA	TCTGGTTTTTTTCGGATTTGTGCTCATTTCAGT
TTCGGAATTGCACTTATTTTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP033931.1\|AZB35712.1\|4457191_4457623_+\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB35705.1\|4451733_4452369_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379251
CP033931.1\|AZB36477.1\|4456965_4457175_+\|addiction-module-toxin-RelE	unknown	unknown	unknown
CP033931.1\|AZB35706.1\|4452408_4452630_+\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB35707.1\|4452689_4453787_+\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB35698.1\|4445638_4447123_-\|tellurium-resistance-protein-TerC	unknown	unknown	unknown
CP033931.1\|AZB35703.1\|4451082_4451484_+\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB35710.1\|4455713_4455890_-\|histone-H1	unknown	unknown	unknown
CP033931.1\|AZB35708.1\|4454205_4455039_+\|DNA-primase	unknown	unknown	gnl\|CDD\|379044
CP033931.1\|AZB35704.1\|4451480_4451732_+\|DUF3853-family-protein	unknown	unknown	gnl\|CDD\|372411
CP033931.1\|AZB35711.1\|4456554_4456953_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|239942
CP033931.1\|AZB35700.1\|4447820_4449521_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378964
CP033931.1\|AZB35713.1\|4457656_4458208_+\|PRTRC-system-protein-E	unknown	unknown	gnl\|CDD\|274758
CP033931.1\|AZB35702.1\|4450650_4450914_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|378935
CP033931.1\|AZB35715.1\|4458521_4459688_+\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB35714.1\|4458225_4458444_+\|PRTRC-system-protein-C	unknown	unknown	gnl\|CDD\|316934
CP033931.1\|AZB35701.1\|4449567_4450410_+\|RteC-protein	unknown	unknown	gnl\|CDD\|378161
CP033931.1\|AZB35709.1\|4455094_4455646_-\|ATPase	unknown	unknown	gnl\|CDD\|226426
CP033931.1\|AZB35699.1\|4447323_4447545_-\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB35716.1\|4459684_4460407_+\|PRTRC-system-protein-B	unknown	unknown	gnl\|CDD\|373078

Protein	Function_ID	Function_description	E-value
CP033931.1\|AZB35704.1\|4451480_4451732_+\|DUF3853-family-protein	gnl\|CDD\|372411	pfam12964, DUF3853, Protein of unknown function (DUF3853). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	1.98452e-17
CP033931.1\|AZB35705.1\|4451733_4452369_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379251	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain. This family represents a crp-like helix-turn-helix domain that is likely to bind DNA.	0.00933405
CP033931.1\|AZB35714.1\|4458225_4458444_+\|PRTRC-system-protein-C	gnl\|CDD\|316934	pfam14454, Prok_Ub, Prokaryotic Ubiquitin. A Ubiquitin-superfamily protein that is present across several bacterial lineages, and found in gene neighborhoods with components of the ubiquitin modification system such as the E1, E2 and JAB proteins, and a novel alpha-helical protein, which is predicted to be enzymatic.	4.30255e-26
CP033931.1\|AZB35713.1\|4457656_4458208_+\|PRTRC-system-protein-E	gnl\|CDD\|274758	TIGR03741, PRTRC_E, PRTRC system protein E. A novel genetic system characterized by six or seven major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family averages about 150 amino acids in length, but the last third contains low-complexity sequence that complicates sequence comparisons. This model does not include the low-complexity region.	5.34612e-06
CP033931.1\|AZB35702.1\|4450650_4450914_+\|DNA-binding-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.0209e-07
CP033931.1\|AZB35711.1\|4456554_4456953_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	1.92097e-22
CP033931.1\|AZB35701.1\|4449567_4450410_+\|RteC-protein	gnl\|CDD\|378161	pfam09357, RteC, RteC protein. Human colonic Bacteroides species harbor a family of large conjugative transposons, called tetracycline resistance (Tcr) elements. Activities of these elements are enhanced by pregrowth of bacteria in medium containing tetracycline, indicating that at least some Tcr element genes are regulated by tetracycline. An insertional disruption in the rteC gene abolished self-transfer of the Tcr element to Bacteroides recipients, indicating that the gene was essential for self-transfer.	8.95518e-76
CP033931.1\|AZB35709.1\|4455094_4455646_-\|ATPase	gnl\|CDD\|226426	COG3911, COG3911, Predicted ATPase [General function prediction only].	2.23294e-48
CP033931.1\|AZB35716.1\|4459684_4460407_+\|PRTRC-system-protein-B	gnl\|CDD\|373078	pfam14460, Prok-E2_D, Prokaryotic E2 family D. A member of the E2/UBC superfamily of proteins found in several bacteria. Members of this family lack the conserved histidine of the classical E2-fold. However, they have an absolutely conserved histidine carboxyl-terminal to the conserved cysteine. Members of this family are usually present in a conserved gene neighborhood with genes encoding members of the Ub modification pathway such as the E1, Ub and JAB proteins. These neighborhoods also contain a gene encoding a rapidly diverging alpha-helical protein.	1.07207e-33
CP033931.1\|AZB35700.1\|4447820_4449521_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	3.86785e-07
CP033931.1\|AZB35708.1\|4454205_4455039_+\|DNA-primase	gnl\|CDD\|379044	pfam13155, Toprim_2, Toprim-like. This is a family or Toprim-like proteins.	1.25767e-07

>CP033931.1|AZB35707.1|4452689_4453787_+|hypothetical-protein
MANPDKDFRLIRNKFEVKNEFSQERIRIGNRFVDDFIFDDNEAADIPINALRVIFNIISIISNEQFRPQDRPKQLSLFDEEFETDNNIFASIRIRNSKISPSGSTQQVVDAYEFLARFKMGWYKSLNSKGKEIKTFGGLISTPSYDKRGYTTFLVSSYWLKKLLVIPEYNYILYNLVYNVRNNKHIIFAIWLSKIPESGTVLKLSTLNKKFGLNYKTANDFCFKFLKLARISLDIHNSLSFNYQYKGDSIFIFPYKAKITSDVLMSEDLQKTPEITKRLSYFRKRFGLQENEMKQFFHQYRNIPQTRILIEKAFKRFIKICRLKKIQSVIFQGIAFLQEIQKLVIQIYQESRTGKLIPNGYPIIL
>CP033931.1|AZB35706.1|4452408_4452630_+|hypothetical-protein
MGKKEITISDLKLGQKVIINGMLAEYKGIQKVRILNLGKADKRVFKAEGVNIFKYYSLADGSKTLKSEKIKLI
>CP033931.1|AZB35705.1|4451733_4452369_+|helix-turn-helix-domain-containing-protein
MYYLELIQRFWDFNKIVKISPTEIALYLYLLKIGYEKDRYDFKISDVELARELGLTRVTIKASKDKLKNRGLIQFQTSNGLPCYYRLLLDYSFEIKPEKEGIKKDSDTENLQKRAILEIPQIIDNLANESTIIPSWEEFISYAKTLQSYDSPMDFSIEKKYKIWVDKGWKNAFNRPISNWKATLKSTLPYMNNSSEDNPISLKDIPNIKRP
>CP033931.1|AZB35704.1|4451480_4451732_+|DUF3853-family-protein
MKEINLKTPMWKLTVGEFLEISKDFIFQQKYEYGLKGLAKILGCSISKASEIKSSGILDEAIIQKGNIIIIDIEKALELFAQK
>CP033931.1|AZB35703.1|4451082_4451484_+|hypothetical-protein
MKLSKIKSFATYHKCIREIHNAGFINYSPSYNSYEGSSIEIIDFESVDKNKNELSLEEKALQEEIFNFSVPALYEIEMYFNERDIVSEEACQFYSLYQSKDWSLTNDKPMKCWKSAARNWISKMKNSNQNQNL
>CP033931.1|AZB35702.1|4450650_4450914_+|DNA-binding-protein
MAISIITKEDLQQFKVELLEAIKELLQGNTTEQKLWLRTSEVKKMLNISSGTLQNLRINGTLSYSKVGGTLYYNYKDIEKLLKDFKH
>CP033931.1|AZB35701.1|4449567_4450410_+|RteC-protein
MVTNTIFREITQLHDELESEINKVYKEDNDVVKLAEKSLILIDNAVRKVKGMISSHHFDTIAQEIHFFKKIKPQFISKFIYHSTILDIESHKPNAGIKIIKEYYEAEQEKLKNFYTEQSEFYSYYRRDATYLDHKIFVRNSYDLKMKLSFGFYNFDTSFTTSHDHLVARFIANQLFDEYLKESIANLSENRSNKILSPLVWSASKVSLTELLFALHLSNCFNSGHTELSEIFRWAEKSFDISLGNYHKTLGEIRLRKNDRSKFLNLLRQNLNQYLDDLDI
>CP033931.1|AZB35700.1|4447820_4449521_+|AraC-family-transcriptional-regulator
MKKLNYFLVFIFAFSQHIFSQQKKERTFWEIRKNYQKMTIDDIRAMPYVKDYIQKSKRQNNLPKLIQGYRDGRQFDFANKMKYADSALAASIKYKNNDDISKDYLSKGIIYYFYQKKYKLALNEYLMAYKYSKDSKDEYHYYKVLYHLGIVKEHLGYYDEALEHFSNCAEFYSTKMNSKMHENILFNYKKAYYNSLHQMTIVNRYLKNFLKSDSLIDLGYHLTRNDGDFLIENSYFLKCRGISKFHKKDYSGAKLDLEQALPILLQRNDFAWTSVIYYYLGKISEVRNQLPNAIKYYGAIDSIFEKQQFIFPEIYRGYNYLISYYKDKDLNKQLYYTNQLLKADSLVTKDYPYLSNKLHKDYDRNTLIQEKENIETTGRNNMLFANILIVTGSLAFTILSYKYIKDQKIKKQYDLLQKRIAEGNNVLLDKKVDEADDNLLKKSLLTPELSHEIRIKLDKFEKELQFTKRLTQNSLAAKLNTNSRYLSAYINENKGVNFNKYIAGLRINYITTLLNSNNKYLNFTIEALAEECGIVARQNFSKLFFEINGIRPADYIKKRKQELGLS
>CP033931.1|AZB35699.1|4447323_4447545_-|hypothetical-protein
MKKFIPFLSIMIGSVLSQSCVQRDEDIISTNNEKFEIKTNLQMRYDSAKTVQQIIDPDPPVRDGDNWRIKPSN
>CP033931.1|AZB35698.1|4445638_4447123_-|tellurium-resistance-protein-TerC
MKNFQIYCITAVSYFFAILFIYASVSKVLDFENFQSQIAQSPLLSVYAGSISYFTIVIEFIAVFFLMIPAKRILGLYFSLGLMFAFTMYIYLILEYSEFVPCSCGGILENMGWKSHLIFNGICVIIAGFAIVLAERHQGQKAIKFISRPVVVIFISSLSVSLLYLQSEKQIRKNNNFTRRYIPHAVEEETHLNIDYNSFYFMGDDSHNLYLGNTTAPLNITVVKKDLSGFSKYRIPLETKSYQFKSLKIAWKAPFYYIYDGTVPVIFKGTISNNDPLHKVTENEMFFDQLNVLSEENYLFRSQSSKFKNFVLGYYQNNIVKLEYDLLGTDEAGYIDNDGLLLSDLQTKMSVYLYYYKNEFVAFDHAKSRNSNRLKMIGFQKEQKTETVKLPDGSTKIKNPLQQSVKNAFVTNNLLFVNSNSKAVHDGTMQWNKSSIIDLYKINQQYYSGSFLVPNRHGEKVKDMFIAGEYLYILIGNEIVKYHFAQPILEQFHR
>CP033931.1|AZB35708.1|4454205_4455039_+|DNA-primase
MNCEEIKQKIGIRTVLESFNLFPSKENRRTAFYFAIDREERTPSLSVDFVKNRAFDFGTGKSYDVISIVQQINQCSVSDALKYLARFGFSVQNDIQKVDSNQELEYEILKTSEIRHFALVQYLTSRRVYEQKDLVREIHYKMNGKKYFGIGFLNDSGGFEIRNKYSKICLSKKDVTLIKTQNNNFDEIAIFEGFFDYLTYRNMEKEQSSDYLILNSTSMLFKVENELKKYNKISLFLDNDSNGKSVKSKIEKRYKNVEDCSVIYESYNDLNEWYCNI
>CP033931.1|AZB35709.1|4455094_4455646_-|ATPase
MLKNKSQHLFVITGGPGAGKTTLLNALEIKGKRVIPEDARQIIKQQMQINGEGLPWKNKILYAELMFEASLKTYQKVTSEVLDKTVFFDRGILGAICYMEMENIPVSDEIVAVVRSNPYNQKVFILPPWLDIYETDNERKQTWKEAVYTFDLMKQTYTKFGYKVIEVPKENIDKRCEFIFSNI
>CP033931.1|AZB35710.1|4455713_4455890_-|histone-H1
MKELIEKINAEFEAFTTEANQQVEKGNKAAGTRARKSALELSKLFKDFRKISVEESKK
>CP033931.1|AZB35711.1|4456554_4456953_+|single-stranded-DNA-binding-protein
MNTIIGRVTKNAEINILKNDKQVVNFSIAINDSYKNRQGEKVEQTTYYNCAYWQSPNVAKSLTKGTLVELSGRTSSNAWIGKDGEIRSGLNFHTSNIKFHGGGKREDVQNFVTEKAQDKKTFAEDTDDDLPF
>CP033931.1|AZB36477.1|4456965_4457175_+|addiction-module-toxin-RelE
MEAQFNFQIKQKKDKRGWEDIEVYYLTECDRTTAVRYARKISKIFKSEIRLTQGAEPLKVSGTYIYETN
>CP033931.1|AZB35712.1|4457191_4457623_+|hypothetical-protein
MKKSIKPTEYFLIKAKSEWDDCDFAIIHITEEWKKIQKKRLEVVKIVKNDSDLKWLNYEDVKVEFFKFSKENYPQIEEWLSEKNQFFVELEKDDLKQLLQPEHDLHNRQMQVFKSGNAIYNAFGKHTSEEFFTEEFSLEEFTK
>CP033931.1|AZB35713.1|4457656_4458208_+|PRTRC-system-protein-E
MQTNFFRHIAKMDLTGDLQITLRPTTENCFVLSILLSNEQCGDEARKLIPPLNLRGTAEELDNGFFEQITTPLQTASGLMVDMEAFMKQLEEVKKKSAMEKEKTDKEKKEKDTKEKKYKEALQKAEELEKEGKYKDAWTALPKASDYPDFAEVIRGKQDEYSKFLAPNLFTESNDNNVPTETT
>CP033931.1|AZB35714.1|4458225_4458444_+|PRTRC-system-protein-C
MLLATLLERVFVLKHNGHEIKLTDPEPKWSVEAVMNFYANTYPILTTAKVSAPQIKDDTIQYKFESVMGTKG
>CP033931.1|AZB35715.1|4458521_4459688_+|hypothetical-protein
MNATKNHIGKNQVTGRKTTRRVTSTIGQVRSLASKTKDLERNSERQTEVCTNSNASNGFLKCKFLPKQEEVSHFQGSKKILNTERDFYKSLSKFSKQYGVEPMQTKDFGFPYNLALAMWDIKTKMKQANADWNQFKLIRTNKKFHFAKEEQFCTNTSLYFIPVVPLFKMLHDKMCKKNAQLLLSVFSYLYHIANVPYYRQQASYLYWIYEMHEGWMEEDEAGEDSHHYCREFEMSKNIGDKIERKIFNIKNLDFFEQRLKCFKIQNEFDIICHKVASEAFALYSEYPNTTIFRNKPSSEENPHDDDYSNKAISMDMYISFVANTKGCLYNNIEDSINAEFNEYGSIEEPTIYLPINGTEIPKADFDFEYRLFALMEKLHQVLTCKKLE
>CP033931.1|AZB35716.1|4459684_4460407_+|PRTRC-system-protein-B
MNNVIDTNKYFGILYEPKSALVFYESLDKNEMYVEHFDMDRNGNPVNAHPLTVNEAKALAKSLVIDEEIEKAFLKSKGILANNILHINPSQKGSVIWYTKAQERQMYFVKNLEIPSGKAKVPAMLWIADTETLSVFALSNDKRPTEKTPLHYAPFFNVYNDGDVCMGTVDIKIKNSASVEEFIEQWENYFFNSYFSHLVGNHNPIDGNLVNLWKKLLESNEAFPVKMLKKNNKTLKNLLR

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Crispr_ID: CP033931_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033931_4

4453789-4453897

Orphan

Consensus_repeat	Method
TTCGGAATTGCACTCATTCCAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033931_4

>merge|CP033931|4|4453789-4453897|CRISPRCasFinder
TTCGGAATTGCGCTCATTCGGATTTCGGAATTGCGGTAGCTGGAGTTAAAGAAATCTTAAAAAATGATAGCTTCAGTCATTGTTTTCGGAATTGCGCTCATTTCATTTT

>CP033931|4|4|4453789-4453897|CRISPRCasFinder
TTCGGAATTGCGCTCATTCGGATT	TCGGAATTGCGGTAGCTGGAGTTAAAGAAATCTTAAAAAATGATAGCTTCAGTCATTGTT
TTCGGAATTGCGCTCATTTCATTTT

Protein	Signature genes	Signature genes Name	Protein_function
CP033931.1\|AZB35712.1\|4457191_4457623_+\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB35705.1\|4451733_4452369_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379251
CP033931.1\|AZB36477.1\|4456965_4457175_+\|addiction-module-toxin-RelE	unknown	unknown	unknown
CP033931.1\|AZB35706.1\|4452408_4452630_+\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB35707.1\|4452689_4453787_+\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB35698.1\|4445638_4447123_-\|tellurium-resistance-protein-TerC	unknown	unknown	unknown
CP033931.1\|AZB35703.1\|4451082_4451484_+\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB35710.1\|4455713_4455890_-\|histone-H1	unknown	unknown	unknown
CP033931.1\|AZB35708.1\|4454205_4455039_+\|DNA-primase	unknown	unknown	gnl\|CDD\|379044
CP033931.1\|AZB35704.1\|4451480_4451732_+\|DUF3853-family-protein	unknown	unknown	gnl\|CDD\|372411
CP033931.1\|AZB35711.1\|4456554_4456953_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|239942
CP033931.1\|AZB35700.1\|4447820_4449521_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378964
CP033931.1\|AZB35713.1\|4457656_4458208_+\|PRTRC-system-protein-E	unknown	unknown	gnl\|CDD\|274758
CP033931.1\|AZB35702.1\|4450650_4450914_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|378935
CP033931.1\|AZB35715.1\|4458521_4459688_+\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB35714.1\|4458225_4458444_+\|PRTRC-system-protein-C	unknown	unknown	gnl\|CDD\|316934
CP033931.1\|AZB35701.1\|4449567_4450410_+\|RteC-protein	unknown	unknown	gnl\|CDD\|378161
CP033931.1\|AZB35709.1\|4455094_4455646_-\|ATPase	unknown	unknown	gnl\|CDD\|226426
CP033931.1\|AZB35699.1\|4447323_4447545_-\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB35716.1\|4459684_4460407_+\|PRTRC-system-protein-B	unknown	unknown	gnl\|CDD\|373078

Protein	Function_ID	Function_description	E-value
CP033931.1\|AZB35704.1\|4451480_4451732_+\|DUF3853-family-protein	gnl\|CDD\|372411	pfam12964, DUF3853, Protein of unknown function (DUF3853). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	1.98452e-17
CP033931.1\|AZB35705.1\|4451733_4452369_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379251	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain. This family represents a crp-like helix-turn-helix domain that is likely to bind DNA.	0.00933405
CP033931.1\|AZB35714.1\|4458225_4458444_+\|PRTRC-system-protein-C	gnl\|CDD\|316934	pfam14454, Prok_Ub, Prokaryotic Ubiquitin. A Ubiquitin-superfamily protein that is present across several bacterial lineages, and found in gene neighborhoods with components of the ubiquitin modification system such as the E1, E2 and JAB proteins, and a novel alpha-helical protein, which is predicted to be enzymatic.	4.30255e-26
CP033931.1\|AZB35713.1\|4457656_4458208_+\|PRTRC-system-protein-E	gnl\|CDD\|274758	TIGR03741, PRTRC_E, PRTRC system protein E. A novel genetic system characterized by six or seven major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family averages about 150 amino acids in length, but the last third contains low-complexity sequence that complicates sequence comparisons. This model does not include the low-complexity region.	5.34612e-06
CP033931.1\|AZB35702.1\|4450650_4450914_+\|DNA-binding-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.0209e-07
CP033931.1\|AZB35711.1\|4456554_4456953_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	1.92097e-22
CP033931.1\|AZB35701.1\|4449567_4450410_+\|RteC-protein	gnl\|CDD\|378161	pfam09357, RteC, RteC protein. Human colonic Bacteroides species harbor a family of large conjugative transposons, called tetracycline resistance (Tcr) elements. Activities of these elements are enhanced by pregrowth of bacteria in medium containing tetracycline, indicating that at least some Tcr element genes are regulated by tetracycline. An insertional disruption in the rteC gene abolished self-transfer of the Tcr element to Bacteroides recipients, indicating that the gene was essential for self-transfer.	8.95518e-76
CP033931.1\|AZB35709.1\|4455094_4455646_-\|ATPase	gnl\|CDD\|226426	COG3911, COG3911, Predicted ATPase [General function prediction only].	2.23294e-48
CP033931.1\|AZB35716.1\|4459684_4460407_+\|PRTRC-system-protein-B	gnl\|CDD\|373078	pfam14460, Prok-E2_D, Prokaryotic E2 family D. A member of the E2/UBC superfamily of proteins found in several bacteria. Members of this family lack the conserved histidine of the classical E2-fold. However, they have an absolutely conserved histidine carboxyl-terminal to the conserved cysteine. Members of this family are usually present in a conserved gene neighborhood with genes encoding members of the Ub modification pathway such as the E1, Ub and JAB proteins. These neighborhoods also contain a gene encoding a rapidly diverging alpha-helical protein.	1.07207e-33
CP033931.1\|AZB35700.1\|4447820_4449521_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	3.86785e-07
CP033931.1\|AZB35708.1\|4454205_4455039_+\|DNA-primase	gnl\|CDD\|379044	pfam13155, Toprim_2, Toprim-like. This is a family or Toprim-like proteins.	1.25767e-07

>CP033931.1|AZB35707.1|4452689_4453787_+|hypothetical-protein
MANPDKDFRLIRNKFEVKNEFSQERIRIGNRFVDDFIFDDNEAADIPINALRVIFNIISIISNEQFRPQDRPKQLSLFDEEFETDNNIFASIRIRNSKISPSGSTQQVVDAYEFLARFKMGWYKSLNSKGKEIKTFGGLISTPSYDKRGYTTFLVSSYWLKKLLVIPEYNYILYNLVYNVRNNKHIIFAIWLSKIPESGTVLKLSTLNKKFGLNYKTANDFCFKFLKLARISLDIHNSLSFNYQYKGDSIFIFPYKAKITSDVLMSEDLQKTPEITKRLSYFRKRFGLQENEMKQFFHQYRNIPQTRILIEKAFKRFIKICRLKKIQSVIFQGIAFLQEIQKLVIQIYQESRTGKLIPNGYPIIL
>CP033931.1|AZB35706.1|4452408_4452630_+|hypothetical-protein
MGKKEITISDLKLGQKVIINGMLAEYKGIQKVRILNLGKADKRVFKAEGVNIFKYYSLADGSKTLKSEKIKLI
>CP033931.1|AZB35705.1|4451733_4452369_+|helix-turn-helix-domain-containing-protein
MYYLELIQRFWDFNKIVKISPTEIALYLYLLKIGYEKDRYDFKISDVELARELGLTRVTIKASKDKLKNRGLIQFQTSNGLPCYYRLLLDYSFEIKPEKEGIKKDSDTENLQKRAILEIPQIIDNLANESTIIPSWEEFISYAKTLQSYDSPMDFSIEKKYKIWVDKGWKNAFNRPISNWKATLKSTLPYMNNSSEDNPISLKDIPNIKRP
>CP033931.1|AZB35704.1|4451480_4451732_+|DUF3853-family-protein
MKEINLKTPMWKLTVGEFLEISKDFIFQQKYEYGLKGLAKILGCSISKASEIKSSGILDEAIIQKGNIIIIDIEKALELFAQK
>CP033931.1|AZB35703.1|4451082_4451484_+|hypothetical-protein
MKLSKIKSFATYHKCIREIHNAGFINYSPSYNSYEGSSIEIIDFESVDKNKNELSLEEKALQEEIFNFSVPALYEIEMYFNERDIVSEEACQFYSLYQSKDWSLTNDKPMKCWKSAARNWISKMKNSNQNQNL
>CP033931.1|AZB35702.1|4450650_4450914_+|DNA-binding-protein
MAISIITKEDLQQFKVELLEAIKELLQGNTTEQKLWLRTSEVKKMLNISSGTLQNLRINGTLSYSKVGGTLYYNYKDIEKLLKDFKH
>CP033931.1|AZB35701.1|4449567_4450410_+|RteC-protein
MVTNTIFREITQLHDELESEINKVYKEDNDVVKLAEKSLILIDNAVRKVKGMISSHHFDTIAQEIHFFKKIKPQFISKFIYHSTILDIESHKPNAGIKIIKEYYEAEQEKLKNFYTEQSEFYSYYRRDATYLDHKIFVRNSYDLKMKLSFGFYNFDTSFTTSHDHLVARFIANQLFDEYLKESIANLSENRSNKILSPLVWSASKVSLTELLFALHLSNCFNSGHTELSEIFRWAEKSFDISLGNYHKTLGEIRLRKNDRSKFLNLLRQNLNQYLDDLDI
>CP033931.1|AZB35700.1|4447820_4449521_+|AraC-family-transcriptional-regulator
MKKLNYFLVFIFAFSQHIFSQQKKERTFWEIRKNYQKMTIDDIRAMPYVKDYIQKSKRQNNLPKLIQGYRDGRQFDFANKMKYADSALAASIKYKNNDDISKDYLSKGIIYYFYQKKYKLALNEYLMAYKYSKDSKDEYHYYKVLYHLGIVKEHLGYYDEALEHFSNCAEFYSTKMNSKMHENILFNYKKAYYNSLHQMTIVNRYLKNFLKSDSLIDLGYHLTRNDGDFLIENSYFLKCRGISKFHKKDYSGAKLDLEQALPILLQRNDFAWTSVIYYYLGKISEVRNQLPNAIKYYGAIDSIFEKQQFIFPEIYRGYNYLISYYKDKDLNKQLYYTNQLLKADSLVTKDYPYLSNKLHKDYDRNTLIQEKENIETTGRNNMLFANILIVTGSLAFTILSYKYIKDQKIKKQYDLLQKRIAEGNNVLLDKKVDEADDNLLKKSLLTPELSHEIRIKLDKFEKELQFTKRLTQNSLAAKLNTNSRYLSAYINENKGVNFNKYIAGLRINYITTLLNSNNKYLNFTIEALAEECGIVARQNFSKLFFEINGIRPADYIKKRKQELGLS
>CP033931.1|AZB35699.1|4447323_4447545_-|hypothetical-protein
MKKFIPFLSIMIGSVLSQSCVQRDEDIISTNNEKFEIKTNLQMRYDSAKTVQQIIDPDPPVRDGDNWRIKPSN
>CP033931.1|AZB35698.1|4445638_4447123_-|tellurium-resistance-protein-TerC
MKNFQIYCITAVSYFFAILFIYASVSKVLDFENFQSQIAQSPLLSVYAGSISYFTIVIEFIAVFFLMIPAKRILGLYFSLGLMFAFTMYIYLILEYSEFVPCSCGGILENMGWKSHLIFNGICVIIAGFAIVLAERHQGQKAIKFISRPVVVIFISSLSVSLLYLQSEKQIRKNNNFTRRYIPHAVEEETHLNIDYNSFYFMGDDSHNLYLGNTTAPLNITVVKKDLSGFSKYRIPLETKSYQFKSLKIAWKAPFYYIYDGTVPVIFKGTISNNDPLHKVTENEMFFDQLNVLSEENYLFRSQSSKFKNFVLGYYQNNIVKLEYDLLGTDEAGYIDNDGLLLSDLQTKMSVYLYYYKNEFVAFDHAKSRNSNRLKMIGFQKEQKTETVKLPDGSTKIKNPLQQSVKNAFVTNNLLFVNSNSKAVHDGTMQWNKSSIIDLYKINQQYYSGSFLVPNRHGEKVKDMFIAGEYLYILIGNEIVKYHFAQPILEQFHR
>CP033931.1|AZB35708.1|4454205_4455039_+|DNA-primase
MNCEEIKQKIGIRTVLESFNLFPSKENRRTAFYFAIDREERTPSLSVDFVKNRAFDFGTGKSYDVISIVQQINQCSVSDALKYLARFGFSVQNDIQKVDSNQELEYEILKTSEIRHFALVQYLTSRRVYEQKDLVREIHYKMNGKKYFGIGFLNDSGGFEIRNKYSKICLSKKDVTLIKTQNNNFDEIAIFEGFFDYLTYRNMEKEQSSDYLILNSTSMLFKVENELKKYNKISLFLDNDSNGKSVKSKIEKRYKNVEDCSVIYESYNDLNEWYCNI
>CP033931.1|AZB35709.1|4455094_4455646_-|ATPase
MLKNKSQHLFVITGGPGAGKTTLLNALEIKGKRVIPEDARQIIKQQMQINGEGLPWKNKILYAELMFEASLKTYQKVTSEVLDKTVFFDRGILGAICYMEMENIPVSDEIVAVVRSNPYNQKVFILPPWLDIYETDNERKQTWKEAVYTFDLMKQTYTKFGYKVIEVPKENIDKRCEFIFSNI
>CP033931.1|AZB35710.1|4455713_4455890_-|histone-H1
MKELIEKINAEFEAFTTEANQQVEKGNKAAGTRARKSALELSKLFKDFRKISVEESKK
>CP033931.1|AZB35711.1|4456554_4456953_+|single-stranded-DNA-binding-protein
MNTIIGRVTKNAEINILKNDKQVVNFSIAINDSYKNRQGEKVEQTTYYNCAYWQSPNVAKSLTKGTLVELSGRTSSNAWIGKDGEIRSGLNFHTSNIKFHGGGKREDVQNFVTEKAQDKKTFAEDTDDDLPF
>CP033931.1|AZB36477.1|4456965_4457175_+|addiction-module-toxin-RelE
MEAQFNFQIKQKKDKRGWEDIEVYYLTECDRTTAVRYARKISKIFKSEIRLTQGAEPLKVSGTYIYETN
>CP033931.1|AZB35712.1|4457191_4457623_+|hypothetical-protein
MKKSIKPTEYFLIKAKSEWDDCDFAIIHITEEWKKIQKKRLEVVKIVKNDSDLKWLNYEDVKVEFFKFSKENYPQIEEWLSEKNQFFVELEKDDLKQLLQPEHDLHNRQMQVFKSGNAIYNAFGKHTSEEFFTEEFSLEEFTK
>CP033931.1|AZB35713.1|4457656_4458208_+|PRTRC-system-protein-E
MQTNFFRHIAKMDLTGDLQITLRPTTENCFVLSILLSNEQCGDEARKLIPPLNLRGTAEELDNGFFEQITTPLQTASGLMVDMEAFMKQLEEVKKKSAMEKEKTDKEKKEKDTKEKKYKEALQKAEELEKEGKYKDAWTALPKASDYPDFAEVIRGKQDEYSKFLAPNLFTESNDNNVPTETT
>CP033931.1|AZB35714.1|4458225_4458444_+|PRTRC-system-protein-C
MLLATLLERVFVLKHNGHEIKLTDPEPKWSVEAVMNFYANTYPILTTAKVSAPQIKDDTIQYKFESVMGTKG
>CP033931.1|AZB35715.1|4458521_4459688_+|hypothetical-protein
MNATKNHIGKNQVTGRKTTRRVTSTIGQVRSLASKTKDLERNSERQTEVCTNSNASNGFLKCKFLPKQEEVSHFQGSKKILNTERDFYKSLSKFSKQYGVEPMQTKDFGFPYNLALAMWDIKTKMKQANADWNQFKLIRTNKKFHFAKEEQFCTNTSLYFIPVVPLFKMLHDKMCKKNAQLLLSVFSYLYHIANVPYYRQQASYLYWIYEMHEGWMEEDEAGEDSHHYCREFEMSKNIGDKIERKIFNIKNLDFFEQRLKCFKIQNEFDIICHKVASEAFALYSEYPNTTIFRNKPSSEENPHDDDYSNKAISMDMYISFVANTKGCLYNNIEDSINAEFNEYGSIEEPTIYLPINGTEIPKADFDFEYRLFALMEKLHQVLTCKKLE
>CP033931.1|AZB35716.1|4459684_4460407_+|PRTRC-system-protein-B
MNNVIDTNKYFGILYEPKSALVFYESLDKNEMYVEHFDMDRNGNPVNAHPLTVNEAKALAKSLVIDEEIEKAFLKSKGILANNILHINPSQKGSVIWYTKAQERQMYFVKNLEIPSGKAKVPAMLWIADTETLSVFALSNDKRPTEKTPLHYAPFFNVYNDGDVCMGTVDIKIKNSASVEEFIEQWENYFFNSYFSHLVGNHNPIDGNLVNLWKKLLESNEAFPVKMLKKNNKTLKNLLR

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Crispr_ID: CP033931_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033931_6

4532256-4532337

Orphan

Consensus_repeat	Method
TTACTAATGGAATTAGTATATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033931_6

>merge|CP033931|6|4532256-4532337|CRISPRCasFinder
TTACTAATGGAATTAGTATATGAGTGGATAGGCTCATATACTTCAAAGTTAAAAAAATCTTTCTAATGGAATTAGTATATGA

>CP033931|6|6|4532256-4532337|CRISPRCasFinder
TTACTAATGGAATTAGTATATGA	GTGGATAGGCTCATATACTTCAAAGTTAAAAAAATC
TTTCTAATGGAATTAGTATATGA

Protein	Signature genes	Signature genes Name	Protein_function
CP033931.1\|AZB35785.1\|4539488_4540001_+\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB35775.1\|4529842_4530055_-\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB35772.1\|4525550_4526768_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|379862
CP033931.1\|AZB35776.1\|4530418_4531219_-\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|225412
CP033931.1\|AZB36480.1\|4523040_4524288_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
CP033931.1\|AZB35778.1\|4531542_4532238_-\|RNA-polymerase-subunit-sigma	unknown	unknown	unknown
CP033931.1\|AZB35770.1\|4521077_4523024_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226220
CP033931.1\|AZB35773.1\|4526779_4527256_+\|cytochrome-C	unknown	unknown	gnl\|CDD\|379587
CP033931.1\|AZB35774.1\|4527269_4529540_+\|copper-oxidase	unknown	unknown	gnl\|CDD\|273649
CP033931.1\|AZB35777.1\|4531211_4531556_-\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB35786.1\|4543102_4544428_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|238489
CP033931.1\|AZB35782.1\|4536670_4537150_-\|transposase	unknown	unknown	gnl\|CDD\|376574
CP033931.1\|AZB36482.1\|4541549_4542578_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|341130
CP033931.1\|AZB35780.1\|4533837_4534365_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375583
CP033931.1\|AZB35779.1\|4532842_4533829_+\|nucleotidyltransferase	unknown	unknown	gnl\|CDD\|143390
CP033931.1\|AZB35771.1\|4524284_4525547_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|379862
CP033931.1\|AZB36481.1\|4535277_4536051_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380130
CP033931.1\|AZB35783.1\|4537621_4537993_+\|hypothetical-protein	unknown	unknown	unknown
CP033931.1\|AZB35784.1\|4537998_4539486_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379980
CP033931.1\|AZB35781.1\|4534348_4535233_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|365803

Protein	Function_ID	Function_description	E-value
CP033931.1\|AZB35772.1\|4525550_4526768_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|379862	pfam16576, HlyD_D23, Barrel-sandwich domain of CusB or HlyD membrane-fusion. HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.	8.26515e-73
CP033931.1\|AZB35773.1\|4526779_4527256_+\|cytochrome-C	gnl\|CDD\|379587	pfam14376, Haem_bd, Haem-binding domain. This domain contains a potential haem-binding motif, CXXCH. This family is found in association with pfam00034 and pfam03150.	4.83133e-64
CP033931.1\|AZB36480.1\|4523040_4524288_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	6.83763e-11
CP033931.1\|AZB35780.1\|4533837_4534365_+\|hypothetical-protein	gnl\|CDD\|375583	pfam18138, bacHORMA_1, Bacterial HORMA domain family 1. Family of bacterial HORMA domains found in conserved genome contexts with Pch2/TRIP13 P-loop NTPases. Acts as a 'third component' in broad class of conflict systems reliant on the production of second messenger nucleotide or nucleotide derivatives. Together with Pch2/TRIP13, could act as co-effectors or in regulation of other effectors of the systems.	1.73598e-49
CP033931.1\|AZB35770.1\|4521077_4523024_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	0
CP033931.1\|AZB35776.1\|4530418_4531219_-\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|225412	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism].	2.26808e-21
CP033931.1\|AZB35774.1\|4527269_4529540_+\|copper-oxidase	gnl\|CDD\|273649	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds].	7.39003e-106
CP033931.1\|AZB35786.1\|4543102_4544428_-\|PDZ-domain-containing-protein	gnl\|CDD\|238489	cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.	2.87291e-12
CP033931.1\|AZB35782.1\|4536670_4537150_-\|transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	2.55426e-32
CP033931.1\|AZB36482.1\|4541549_4542578_+\|murein-L,D-transpeptidase	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	6.89918e-13
CP033931.1\|AZB35781.1\|4534348_4535233_+\|AAA-family-ATPase	gnl\|CDD\|365803	pfam00004, AAA, ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.	1.77785e-16
CP033931.1\|AZB35779.1\|4532842_4533829_+\|nucleotidyltransferase	gnl\|CDD\|143390	cd05400, NT_2-5OAS_ClassI-CCAase, Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this family.	6.05407e-13
CP033931.1\|AZB35771.1\|4524284_4525547_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|379862	pfam16576, HlyD_D23, Barrel-sandwich domain of CusB or HlyD membrane-fusion. HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.	1.36476e-53
CP033931.1\|AZB36481.1\|4535277_4536051_+\|hypothetical-protein	gnl\|CDD\|380130	pfam18167, Sa_NUDIX, SMODS-associated NUDIX domain. NUDIX domain with distinctive features in the substrate-interacting region observed associating with SMODS domain synthetases. Predicted to cleave nucleotide diphosphate bonds, potentially to regulate flux through the pore formed by fused 2TM module.	3.00984e-81
CP033931.1\|AZB35784.1\|4537998_4539486_+\|hypothetical-protein	gnl\|CDD\|379980	pfam17517, IgGFc_binding, IgGFc binding protein. This domain is found at the N terminal of human IgGFc-binding protein and has been shown to confer IgG Fc binding activity. It may play a role in immune protection and inflammation in the intestines of primates.	2.12655e-30

>CP033931.1|AZB35778.1|4531542_4532238_-|RNA-polymerase-subunit-sigma
MNVEQKKTDEIVFETLPSDELIDYISFKEEYPEEAAAAFTEFCSRFERDILQKAEIYCNKFNYSEVVALEIATCAFARVWKYHSFNKSKAKYPDDIDRSILLWLYPIVYTQLVKYGDLNTCAEPDEDDLSIVENIDDLISLTVGDDDIQKKRELKIRLEIIERAMLGLSEKHKIVYLTYKAYENTGKKNIPRSVGKKLRDRLNLVQNSIQVYKKEANDHINNYLKAFNGNR
>CP033931.1|AZB35777.1|4531211_4531556_-|hypothetical-protein
MGIDKKYIGKVTETNLDDWLHSTGFLFPQNKTQIERFNKLYEDYDFKLKNTGINVKSIIDGSFCVEKESKIISIDTNLSHEIESLKMVARKGQSNISQSVFDKMKQNQKKKKGD
>CP033931.1|AZB35776.1|4530418_4531219_-|ImmA/IrrE-family-metallo-endopeptidase
MIDSSSLSKIKKLAGSISGNFNTEKIIPLHLIAESEDIEVFYDHYDKGTFDGMTVYDDNEFYIHINIDNHNRFNSPRSRFTLAHELGHYFIDTHRVGLKLGILEPHPSKIDRVQFDKIEREADYFAACLLMPEESFQRNLWKRKKFSFKVIDELSKEYNVSKTSCALRFAEIGNHPIKIVYAENGFVKWQKNSQGFPFWNLLNDKKVPEGLAMADYFKNVKTSIENPEEIFAIDCFENVKSEDSRRIFYEHCIVYENCALSIIWED
>CP033931.1|AZB35775.1|4529842_4530055_-|hypothetical-protein
MSDFKKNYFKHLEEEVTAILKENQNIVSVFINFAQSKNINLIEQELKYAQMSGITVNSKDLFLKLNEDIL
>CP033931.1|AZB35774.1|4527269_4529540_+|copper-oxidase
MNRYKKIPIRILQTVLILLCTQTLFAQKVVHYDLYVKDTLVNYAGKQKRAIAVNGQIPMPTLTFTEGDTAEIVVHNQLKESTSLHWHGVFLPNKEDGVPWLTQKPIAPGTTYTYRFPIIQHGTHWYHSHSGLQEQIGMYGSFVMKKRDNDRTFRKGIDDLPTVPIILSEWTNLNPDNINRMLHNANDWAAIKKNATQSYAEAIKEGYFKTKIKNEWKRMLAMDVSDVYYDKILINGNHTTDLKSVDGKTLKAGDKVRLRVSNGGASSYFWLRYAGGKITVVANDGNDVEPVEVDRLIIAVSETYDIVVTIPEDGVSYEFLATTEDRTQSASYFVGNGIKQLISPLPKLKYFEGMKMMNDMMKMNGDLDDMGMKMSLNQMDMNVVMYPEITGDAKQKQDHSQHNMNMDNDPNRYNANALGDIKTLNYAMLQSPYNTTLPKDAPVKELKFTLTGNMNRYVWSMDNKILSETDKIPVKKGEILRITIYNNSMMRHPMHLHGFDFRVINGKGEKSPLKNVLDIMPMETDTIEFLANEEGDWFFHCHILYHMMSGMNRVFAVDDYQNPYLPNKKQAYNKLQRESNMSHFMAQNDFATNGNDGDAMFQNARWSLGTEWRLGYNDMHGYEVETHLGRYIGKMQWFMPFIGFDWRYRKMGIDEHETNLFGQRNEKDTRRAISLGFMYTLPMLVNFQAEVYHDGIVRLSLMREDIPITKRLRAGFMVNTDMEYMTELRYIINKNVGIRTHYDSDMGFGVGLSLNY
>CP033931.1|AZB35773.1|4526779_4527256_+|cytochrome-C
MNNKLRKLKPFNIAVGILIIISICIQFIQPLRNQSDVVPATHIERVYTVPQNVKTILAQSCYDCHSNNTRYPWYSRIQPGAWYMAEHIKKGKEELNFSEFGEYSARRQRNKFRAMAGQVKDGEMPLSSYTLIHRNAVLSPEDKQVLMAWFGTMEDSIK
>CP033931.1|AZB35772.1|4525550_4526768_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKYYLVITIALLMSVLLSCKDNKHDHAGNNDGSYYTCSMHPQVVSDKPGHCPICHMELVRVEKSKQADPNTIQLNSEQIKLGNIKTDTLKDGLLGDRVILTGVLNFNQYNMQSVSSRVMGRVEKLHYKNVGDFVTKGSPLMEIYSEELNNAKQEYLLALEKKKTFGNINSIDFDQLIQSSKNKLLLWGMTDNQVRALQSAGKISATTTFYSTASGYITSLQVVEGGYVAEGGTIVDLADLSTIWAEAQAYSSQMSLINQTKTATVQIPDLNNKVITGKIDFSNPELNPSSRINLIRITVPNPNKDLKPGMPVYVFLETPKTKGITMPVDAVIRNGKSETVWVQTGEKTFKSRMVKTGTEIDNRIEIVSGLVDGDIVVVSGAYLLNSEYIFRNGADPMAGHDMSSM
>CP033931.1|AZB35771.1|4524284_4525547_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKYIICFLMIILVLYSCNNNTDKTSHPDNSHTAKNSPTYTCPMHPEVTSNKPGKCPKCGMELVQKTVNTNETESIELNTLLKPTNEFVISDIPTIRMQSEHKDITVQALGNIAYDTRQTGNISARISGRIEKLYIRYKFQKIAKGQKVMDIYSPELMEAQVNLLFLLKNDATNNMMINAAKQKLLLLGMSENQLQSIIQKGKPDLSVSVYSNYAGHIHETGTAGSMGSSTSPSNSMGEISETSSELSLKEGMYVQKGQTIFNVFNPGKSWVLLNIFPEDVPLVKTGQTVSIIPEVAPEKKFIGTIGFIEPFFRPGSKTLSVRVYFDNNRMQLPIGSQVKSEISTAGISGNWIPKEAVISLGLTKVILKKVDRGFIVNKIETGNEANGYIEVLQGLLPVEEIAGNAQYLMDSESFVRTKNN
>CP033931.1|AZB36480.1|4523040_4524288_+|TolC-family-protein
MKKIIFTAFIVCLFTNINAQVISLQNVIDSIQTNHPIVKMYDNEIRSMDEAAKGARSWMPPTIGVGQFMTPYNVNLWKRDGEMKGMGSAMLSIEQMIPNKKKLDAEEAYMNAMSSVEKENKGAGINEIIQDAKLLYSEWIVLLKRLDVVAENEKMLNFMIKNAEIRYKNGVGKIGAYYKAKAALGSTHNMQIMYENDIKEKRIRLNTLMGRNPMAPFEIDTIFSFNDYSDMVFDTALFNKNRSDLKSLDQQIRLTTLKQETERQSLKPEFGVRFENMYGFGGQPMQYTAMAMVKLPFVNWASKMSKANIASLKWKADALSSQKNMMINEYSGMAYGMRNEFDLKKNQLSLYRDDIIPALKNNFKTMQLGYEQNTEELFMLYDAWEKLNMTQLEYLDILSKAFEMQITIDRLIERK
>CP033931.1|AZB35770.1|4521077_4523024_+|efflux-RND-transporter-permease-subunit
MKIKWFKKKANKNVGYEKIPEEVRLSIIEKSCKQVSRGVFFSTIIIITSFLPVFLLTGQEGKLFHPLAYTKTFILVVDALLVLTLAPVLISFFMKGKFKSEHSNPINRGLEKLYEPVIKWCVKWRKTVLGINIAALIISIPMILNLGREFMPPLDEGSLLFMPVTLPDVSNSEAKRILQVQDKIIKSVPEVAHVLGKAGRANTATDNSPISMIETIILLKPQNEWRDGIKKNDIINELNAKLQMPGVTNGWTMPIINRINMLSTGIRTDVGIKVYGQNLDSIYSLSQKIKTELDGVAGIKDMYVEPITGGKYVDIVINRDEIARYNISIDDVNNLVESALGGMKLTTTIEGRQRFSVNARYGQDFRNNIEALKRLPVQTMDFGSIPLGSVAEVKLSEGAPMINSENAMLRGTVLFNVRERDLGSTVEEAKAKLNNMMLKMPQGYFLEWSGQYENLIRGEQTLKWIMPIVLVIIFLSMYFAFHSMREAFFNLISIPFALIGGVFMISLWGVNLSVAVAVGFIALFGLAVETGIVMVIYLNDAMQQLVLLKGNSRETITNEDLREYVIHGAAKRLRPKIMTVCVTLFGLVPILWSTGVGSDMMKPIVLPMVGGVFTSAIHILLVTPIIFLMQKEYELKKFGKIDVLDAAH
>CP033931.1|AZB35779.1|4532842_4533829_+|nucleotidyltransferase
MKLSDKDLQFFISKIKLQPENMGKYRDQVNNLKEKLDKKIAEDDRHGLKVEKYLLAGSWKKHTILKPTGDHPIDIDLVLFVTGDEDIHNDIGKLFDFIVEYLEEIYPQKDISKDVDAAGNTKSVTIYFSGSGLSVDIVPVVPLSTPKDYVWQPSRHGNGKKYITSISKQLSFSLNRRQENSAYTSIVRAIKWWRNYKELKPSDNEPGLSSFTIELIVAYLDINKGIQTNIEEGIIRFFEFVSSTEFPEIIFQDSIRSVPTQYDSAIYVADNTNKENNVAKRMTKPRWAEIIEEAEEAFDTLNFAQARNNEGDTIQEWKSVFGPTFNIK
>CP033931.1|AZB35780.1|4533837_4534365_+|hypothetical-protein
MYGTNTKTNTYTVLDIRKTFESCEADIRTIARRTNKWTMEYVDKVFHDVLKYAEKYYLQSVSITLINTNTGLPVKAAKFIVNDLGDATDSERAGKNNDWPDTDNTSLSIILSHTQKWRNLTSEEKTNFQKELKLSWGSTDINTNFPHLQQSDAQLYASNGYELQKRILNKYEYNF
>CP033931.1|AZB35781.1|4534348_4535233_+|AAA-family-ATPase
MSTIFDNITELPSREIAERAKHLIGFENKYNRILSNLKLLLDQEGLVEWSKKFHKTELPVISQLKEKYPLIILAGDAGTGKTVSAEAIADRMLRELKKEGFFLKLSTRVRGEGLHGQMGNLVNDAFAELKTQAGKKRIAFLLIDEADAIASTRSTMQMHQEEKAAVNTLIQKIDEIRELNGRAILFMSTNRLHFLDEAIVRRAAIILEFERPTFEERVLLFKTSLAGVEITDKQLEELANLSGEESNNGLSFSFSDIRLRILPEAVAKCFPDKALDFETVAETIKKLNPSPKIV
>CP033931.1|AZB36481.1|4535277_4536051_+|hypothetical-protein
MVGGYIEKGNWTESKYSTTGYITLLTFIVTFVYENYNRLGFYFQSKVLLKNTDVRVSISYLYRIKVENEYLLVKSRTRKYFQPVGGCYKTLPGCERKFEELDVRPDRKFETEKGIAKNDLRVHVKGKNLIEFLKWFDSKEDREISPWREFCEELIATEILTWRPFRYIDYRFKKKIQSPIIDLDMGGKGLFIYEVFDLVINDEQMPLLKDLKNKTSENYIWVTDEVIQTLGHETGSKSFPHEIGPHTKYAQNLKWSK
>CP033931.1|AZB35782.1|4536670_4537150_-|transposase
MENNPFNSHSAETEVFANGDTRKQLLARSRYLLYKSREKWTLSQKQRASILFTQYPDLEQAYELTDGLRKIYNQNISKSVAMTKLAHWFRNVEEAEFKSFSTLRKTIMNRYRNILNYFDQRSTNAAAESFNAKIKNFRMQLRGVKDRTFFIFRLAKLFA
>CP033931.1|AZB35783.1|4537621_4537993_+|hypothetical-protein
MADGTTIPRLSVYNINAATSSIVTNGVVTFSNTSPLRLSVINASNVVLAPGTSPMTVATTRAGTIIPANVGGMIFQSASDFLSITEEQIRLKPDLHLRKVKLHWGKTSFGAEHRMNLPLKFPR
>CP033931.1|AZB35784.1|4537998_4539486_+|hypothetical-protein
MVSIMATEDNTIVTINNIDSGTEFINGANATPLTGTSFTRTLQKGQSFILYAKVKINTFSLQDKGWLGAKISSDKNIAVTVGGLMQQGSVDTGTVSDSRDFAVDQLVPVDQLGNEYIVMQGNGGVYERVIVIATESNTTITMNANTNPSYTLANVGDYAIVPATFFTNKNMYIKTNKAVYVFHKIFGSSSLATNSFMFIPPISCFGQTSVNMIPDAKQIGSTVYPNTELAVLAASGAANAPVVTVSGSAAIAPIVAGGTAVPGNPNWRSYRYDIANAAGGTATVKNLRVSSAATIQAELIGASGNAGFGGYYSGFGTSPIVNISVSNSPTIRPCTGNTGNSSLSVSSGLGSYQWYKNNTLIAGATTNSYAIPAGDTTSADYNVIITVPGGCVLYSNVVRSYACPCYKPGATGTPEITKIGISTRASKSTANWPADINNGFIALESNDKGVVITRVSDPETSITNPIDGMIVFDTDDICLKIYDGTKWGCINQTCN
>CP033931.1|AZB35785.1|4539488_4540001_+|hypothetical-protein
MKAIILFLLIILSSPIKAQIGFEKTIIDGSGLIDFPIGTTKGIILPQVADNTSMTDVSEGTFIFDGTTSRVKYYNGITWIELTGQTGTSRTLLPGTENNQSKGIIIGASDSDAKGVLILESQDKALILPKVIDPATNVKSPSPGMMCYDPVLKLVCFYNGTSWAFWGNID
>CP033931.1|AZB36482.1|4541549_4542578_+|murein-L,D-transpeptidase
MKKTFLYACLCAVLLTSCKKEIEKISDTFKDTVSASEIPETEKDTVKKDSVPVVKKESVPPIMQENGFYNAFVIPKDKKLRDSVYAEFSKKYNEQERTAILALNRLDSKSKWNADTLVVPAKIDTTLMAYSPFPMQLDVLSGVKKFVIFSYPIQAYAVYSNGSLVKWGPTSMGKKSAQTTRGLTFANWKKKLSISTVSSEWKLPYNFNIHNIGGIGWHEYTLPGYPASHSCLRLLRKDAQWLYSYADTWILNPGGATTKARGTAVMVFGDYNWGGRKPWKKLLDDPNANNISVEELTKLLEPDVPKMLKEQANREKVADSIKTAKAMAAPIQNERATDTLSK
>CP033931.1|AZB35786.1|4543102_4544428_-|PDZ-domain-containing-protein
MKLKLLLLGLLLSIVVHAQNSFRLINTPKAVIPFQLINNLIFIPININGANLTFMVDTGVAETILFSLENKELQLGNVEKIKFSGLGGSLSIDGLKSDRNLGRIGDNIINNSMSLYVILDEEFNISSHVGIPVNGVIGYHFFKDHPIAIDYISKKITVYENIDALQRKRRKFDEMPISIENNKPYINADVEMTREKKESKLLIDLGNSDAIWLFPTLIKDFVYNRPNIDDFLGRGFNGDIYGKRSRIHNFYLGDFRFEKPLTAMPDEYSIQHVNLVKDRKGSVGGEIMRRFYLIFDYANNKLYLKKNRNFDDPFHFNMSGLDFKQDGLEWQQDRVKIETQPMSGTTNANEVYKDAFQYKFSLKPIFSIAGVRKDSPAYEAGLKKDDKIISINGDKTSDMTLEKILEIMKSSEGRTITMVIQRQEETLTFRFNLEDPIPYQE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP033931_1	1.3\|1225504\|30\|CP033931\|CRISPRCasFinder	1225504-1225533	30	MN694169	Marine virus AFVG_250M458, complete genome	8809-8838	5	0.833
CP033931_1	1.3\|1225504\|30\|CP033931\|CRISPRCasFinder	1225504-1225533	30	NC_011564	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG1 DNA, complete sequence	33448-33477	5	0.833
CP033931_1	1.3\|1225504\|30\|CP033931\|CRISPRCasFinder	1225504-1225533	30	NZ_CP015805	Borrelia mayonii strain MN14-1539 plasmid lp28-10	6460-6489	5	0.833
CP033931_1	1.3\|1225504\|30\|CP033931\|CRISPRCasFinder	1225504-1225533	30	NZ_CP015790	Borrelia mayonii strain MN14-1420 plasmid lp28-10, complete sequence	6460-6489	5	0.833
CP033931_1	1.17\|1226582\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226582-1226611	30	NZ_CP047096	Bacillus marisflavi strain 151-25 plasmid p25, complete sequence	104637-104666	5	0.833
CP033931_2	2.1\|3201488\|29\|CP033931\|CRISPRCasFinder	3201488-3201516	29	NZ_CP020429	Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence	168613-168641	5	0.828
CP033931_2	2.1\|3201488\|29\|CP033931\|CRISPRCasFinder	3201488-3201516	29	MN480763	Streptococcus salivarius strain YU10 plasmid pSsal-YU10, complete sequence	682-710	5	0.828
CP033931_1	1.1\|1225350\|30\|CP033931\|CRISPRCasFinder	1225350-1225379	30	MN693975	Marine virus AFVG_250M1117, complete genome	7146-7175	6	0.8
CP033931_1	1.3\|1225504\|30\|CP033931\|CRISPRCasFinder	1225504-1225533	30	NZ_CP028865	Borreliella garinii strain 20047 plasmid lp36, complete sequence	27470-27499	6	0.8
CP033931_1	1.3\|1225504\|30\|CP033931\|CRISPRCasFinder	1225504-1225533	30	MH617047	Microviridae sp. isolate ctcg936, complete genome	2371-2400	6	0.8
CP033931_1	1.3\|1225504\|30\|CP033931\|CRISPRCasFinder	1225504-1225533	30	NZ_CP018746	Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed1	9529-9558	6	0.8
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	NC_012749	Enterobacteria phage WV8, complete genome	49171-49200	6	0.8
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	EU877232	Enterobacteria phage WV8, complete sequence	49171-49200	6	0.8
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	KP869106	Escherichia coli O157 typing phage 8, partial genome	68022-68051	6	0.8
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	KP869109	Escherichia coli O157 typing phage 11, complete genome	47202-47231	6	0.8
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	MN994498	Phage NBEco004, complete genome	52351-52380	6	0.8
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	NC_041979	Escherichia coli O157 typing phage 1, complete genome	80791-80820	6	0.8
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	KP869113	Escherichia coli O157 typing phage 15, partial genome	10021-10050	6	0.8
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	KP869110	Escherichia coli O157 typing phage 12, complete genome	67022-67051	6	0.8
CP033931_1	1.16\|1226505\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226505-1226534	30	KJ010489	Enterococcus phage IME-EFm1, complete genome	21809-21838	6	0.8
CP033931_1	1.21\|1226890\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226890-1226919	30	NC_006128	Borreliella bavariensis PBi plasmid cp26, complete sequence	3569-3598	6	0.8
CP033931_1	1.3\|1225504\|30\|CP033931\|CRISPRCasFinder	1225504-1225533	30	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	512129-512158	7	0.767
CP033931_1	1.3\|1225504\|30\|CP033931\|CRISPRCasFinder	1225504-1225533	30	MN694758	Marine virus AFVG_250M853, complete genome	10994-11023	7	0.767
CP033931_1	1.3\|1225504\|30\|CP033931\|CRISPRCasFinder	1225504-1225533	30	MN694077	Marine virus AFVG_250M852, complete genome	10998-11027	7	0.767
CP033931_1	1.3\|1225504\|30\|CP033931\|CRISPRCasFinder	1225504-1225533	30	NZ_CP014851	Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence	85225-85254	7	0.767
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	MF158043	Shigella phage Sf16, complete genome	38760-38789	7	0.767
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	MF158044	Shigella phage Sf18, complete genome	88914-88943	7	0.767
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	MF158044	Shigella phage Sf18, complete genome	89330-89359	7	0.767
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	MF327003	Shigella phage Sf14, complete genome	36406-36435	7	0.767
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	MF327005	Shigella phage Sf19, complete genome	36464-36493	7	0.767
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	NC_042076	Shigella phage Sf17, complete genome	35533-35562	7	0.767
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	MK562502	Shigella phage KPS64, complete genome	42367-42396	7	0.767
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	MF158040	Shigella phage Sf13, complete genome	81308-81337	7	0.767
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	MF158041	Shigella phage Sf15, complete genome	49749-49778	7	0.767
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	MN342151	Escherichia phage vB_EcoM_3HA14, complete genome	40454-40483	7	0.767
CP033931_1	1.10\|1226043\|30\|CP033931\|CRISPRCasFinder	1226043-1226072	30	NC_041831	Campylobacter phage vB_CcoM-IBB_35 clone Contig3, complete sequence	4172-4201	7	0.767
CP033931_1	1.12\|1226197\|30\|CP033931\|CRISPRCasFinder	1226197-1226226	30	NC_027390	Proteus phage PM 93, complete genome	9696-9725	7	0.767
CP033931_1	1.21\|1226890\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226890-1226919	30	AP014260	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S30-C66, * SEQUENCING IN PROGRESS *	19359-19388	7	0.767
CP033931_1	1.21\|1226890\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226890-1226919	30	NZ_KT897280	Clostridium botulinum strain FI1111E1 plasmid pFI1111E1, complete sequence	89311-89340	7	0.767
CP033931_1	1.21\|1226890\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226890-1226919	30	NZ_KT897275	Clostridium botulinum strain IFR 12/29 plasmid p12/29, complete sequence	84594-84623	7	0.767
CP033931_1	1.21\|1226890\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226890-1226919	30	NZ_KT897278	Clostridium botulinum strain FWSKR40E1 plasmid pFWSKR40E1, complete sequence	86736-86765	7	0.767
CP033931_1	1.21\|1226890\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226890-1226919	30	NZ_KT897279	Clostridium botulinum strain SWKR38E2 plasmid pSWKR38E2, complete sequence	87872-87901	7	0.767
CP033931_1	1.3\|1225504\|30\|CP033931\|CRISPRCasFinder	1225504-1225533	30	CP024686	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence	211576-211605	8	0.733
CP033931_1	1.3\|1225504\|30\|CP033931\|CRISPRCasFinder	1225504-1225533	30	NZ_AP018256	Calothrix sp. NIES-4071 plasmid plasmid1 DNA, complete genome	127606-127635	8	0.733
CP033931_1	1.5\|1225658\|30\|CP033931\|CRISPRCasFinder	1225658-1225687	30	MT774386	CrAssphage cr110_1, complete genome	56950-56979	8	0.733
CP033931_1	1.8\|1225889\|30\|CP033931\|CRISPRCasFinder	1225889-1225918	30	MT661596	Proteus phage 10, complete genome	6208-6237	8	0.733
CP033931_1	1.11\|1226120\|30\|CP033931\|CRISPRCasFinder	1226120-1226149	30	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	423252-423281	8	0.733
CP033931_1	1.13\|1226274\|30\|CP033931\|CRISPRCasFinder	1226274-1226303	30	MG550111	Halorubrum pleomorphic virus 10, complete genome	5265-5294	8	0.733
CP033931_1	1.13\|1226274\|30\|CP033931\|CRISPRCasFinder	1226274-1226303	30	MG550113	Halorubrum pleomorphic virus 11, complete genome	5274-5303	8	0.733
CP033931_1	1.13\|1226274\|30\|CP033931\|CRISPRCasFinder	1226274-1226303	30	MG550110	Halorubrum pleomorphic virus 12, complete genome	5279-5308	8	0.733
CP033931_1	1.14\|1226351\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226351-1226380	30	NC_018501	Bacillus thuringiensis HD-771 plasmid p02, complete sequence	35502-35531	8	0.733
CP033931_1	1.17\|1226582\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226582-1226611	30	NZ_CP049159	Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence	407734-407763	8	0.733
CP033931_1	1.17\|1226582\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226582-1226611	30	NZ_CP049320	Caballeronia sp. SBC2 plasmid pSBC2-4, complete sequence	337201-337230	8	0.733
CP033931_1	1.17\|1226582\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226582-1226611	30	NC_008607	Pelobacter propionicus DSM 2379 plasmid pPRO1, complete sequence	3300-3329	8	0.733
CP033931_1	1.17\|1226582\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226582-1226611	30	NZ_CP048757	Campylobacter jejuni strain ZS006 plasmid pCJ41K-01, complete sequence	37557-37586	8	0.733
CP033931_1	1.17\|1226582\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226582-1226611	30	EU874396	Bacillus phage IEBH, complete genome	9651-9680	8	0.733
CP033931_1	1.17\|1226582\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226582-1226611	30	NC_031055	Bacillus phage PfEFR-5, complete genome	35967-35996	8	0.733
CP033931_1	1.17\|1226582\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226582-1226611	30	KT725776	Bacillus phage vB_BceS-MY192, partial genome	9738-9767	8	0.733
CP033931_1	1.17\|1226582\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226582-1226611	30	NC_048641	Bacillus phage PfEFR-4, complete genome	35370-35399	8	0.733
CP033931_1	1.21\|1226890\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226890-1226919	30	MN698240	Pelagibacter phage HTVC026P, complete genome	28466-28495	8	0.733
CP033931_1	1.3\|1225504\|30\|CP033931\|CRISPRCasFinder	1225504-1225533	30	NZ_CP039845	Acetobacter pasteurianus strain CICC 22518 plasmid pAP22518-1, complete sequence	213715-213744	9	0.7
CP033931_1	1.13\|1226274\|30\|CP033931\|CRISPRCasFinder	1226274-1226303	30	NZ_CP041067	Bacillus megaterium strain KNU-01 plasmid pKNU_01_3, complete sequence	87981-88010	9	0.7
CP033931_1	1.17\|1226582\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226582-1226611	30	NC_019730	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.02, complete sequence	109008-109037	9	0.7
CP033931_1	1.21\|1226890\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226890-1226919	30	CP046513	Bacillus cereus strain JHU plasmid p2, complete sequence	123473-123502	9	0.7
CP033931_1	1.3\|1225504\|30\|CP033931\|CRISPRCasFinder	1225504-1225533	30	MH791411	UNVERIFIED: Escherichia phage Ecwhy_1, complete genome	280404-280433	10	0.667
CP033931_1	1.18\|1226659\|30\|CP033931\|CRISPRCasFinder,PILER-CR	1226659-1226688	30	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	2335544-2335573	10	0.667

1. spacer 1.3|1225504|30|CP033931|CRISPRCasFinder matches to MN694169 (Marine virus AFVG_250M458, complete genome) position: , mismatch: 5, identity: 0.833

tattttttttacttccttcatgtctgtttc	CRISPR spacer
aaggttgtttacttccttcatttctgtttc	Protospacer
 *  ** ************** ********

2. spacer 1.3|1225504|30|CP033931|CRISPRCasFinder matches to NC_011564 (Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG1 DNA, complete sequence) position: , mismatch: 5, identity: 0.833

tattttttttacttccttca---tgtctgtttc	CRISPR spacer
tattttttttacttcctacattttgtccgt---	Protospacer
***************** **   ****.**

3. spacer 1.3|1225504|30|CP033931|CRISPRCasFinder matches to NZ_CP015805 (Borrelia mayonii strain MN14-1539 plasmid lp28-10) position: , mismatch: 5, identity: 0.833

tattttttttacttccttcatgtctgtttc---	CRISPR spacer
tattttttttagttccttcat---tatttcgat	Protospacer
*********** *********   *.****

4. spacer 1.3|1225504|30|CP033931|CRISPRCasFinder matches to NZ_CP015790 (Borrelia mayonii strain MN14-1420 plasmid lp28-10, complete sequence) position: , mismatch: 5, identity: 0.833

tattttttttacttccttcatgtctgtttc---	CRISPR spacer
tattttttttagttccttcat---tatttcgat	Protospacer
*********** *********   *.****

5. spacer 1.17|1226582|30|CP033931|CRISPRCasFinder,PILER-CR matches to NZ_CP047096 (Bacillus marisflavi strain 151-25 plasmid p25, complete sequence) position: , mismatch: 5, identity: 0.833

gaattgaagtttttgaagaagaccagaaaa	CRISPR spacer
aaaatgaagtttttgaagaggaccaggaca	Protospacer
.** ***************.******.* *

6. spacer 2.1|3201488|29|CP033931|CRISPRCasFinder matches to NZ_CP020429 (Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.828

tcttaaatgactttattggcagaaaaaaa	CRISPR spacer
tattaaatgactgtattggcataaaagga	Protospacer
* ********** ******** ****..*

7. spacer 2.1|3201488|29|CP033931|CRISPRCasFinder matches to MN480763 (Streptococcus salivarius strain YU10 plasmid pSsal-YU10, complete sequence) position: , mismatch: 5, identity: 0.828

tcttaaatgactttattggcagaaaaaaa	CRISPR spacer
tattaaatgactgtattggcataaaagga	Protospacer
* ********** ******** ****..*

8. spacer 1.1|1225350|30|CP033931|CRISPRCasFinder matches to MN693975 (Marine virus AFVG_250M1117, complete genome) position: , mismatch: 6, identity: 0.8

aatgtac-tgaagtaccttttgaaggtaaaa	CRISPR spacer
-atccatatgaagtaccttttgaagatagaa	Protospacer
 ** .*. *****************.**.**

9. spacer 1.3|1225504|30|CP033931|CRISPRCasFinder matches to NZ_CP028865 (Borreliella garinii strain 20047 plasmid lp36, complete sequence) position: , mismatch: 6, identity: 0.8

tattttttttacttccttcatgtctgtttc	CRISPR spacer
cattttttttactcccttcttgtcttcttt	Protospacer
.************.***** ***** .**.

10. spacer 1.3|1225504|30|CP033931|CRISPRCasFinder matches to MH617047 (Microviridae sp. isolate ctcg936, complete genome) position: , mismatch: 6, identity: 0.8

tattttttttacttccttcatgtctgtttc	CRISPR spacer
gttgtcttttactaccttcatttctgtttc	Protospacer
  * *.******* ******* ********

11. spacer 1.3|1225504|30|CP033931|CRISPRCasFinder matches to NZ_CP018746 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed1) position: , mismatch: 6, identity: 0.8

tattttttttacttccttcatgtctgtttc	CRISPR spacer
cattttttttactcccttcttgtcttcttt	Protospacer
.************.***** ***** .**.

12. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to NC_012749 (Enterobacteria phage WV8, complete genome) position: , mismatch: 6, identity: 0.8

caggtataataccacgattaatagcctctt	CRISPR spacer
ttgctacaataccaccattaatagcctctg	Protospacer
. * **.******** *************

13. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to EU877232 (Enterobacteria phage WV8, complete sequence) position: , mismatch: 6, identity: 0.8

caggtataataccacgattaatagcctctt	CRISPR spacer
ttgctacaataccaccattaatagcctctg	Protospacer
. * **.******** *************

14. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to KP869106 (Escherichia coli O157 typing phage 8, partial genome) position: , mismatch: 6, identity: 0.8

caggtataataccacgattaatagcctctt	CRISPR spacer
ttgctacaataccaccattaatagcctctg	Protospacer
. * **.******** *************

15. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to KP869109 (Escherichia coli O157 typing phage 11, complete genome) position: , mismatch: 6, identity: 0.8

caggtataataccacgattaatagcctctt	CRISPR spacer
ttgctacaataccaccattaatagcctctg	Protospacer
. * **.******** *************

16. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to MN994498 (Phage NBEco004, complete genome) position: , mismatch: 6, identity: 0.8

caggtataataccacgattaatagcctctt	CRISPR spacer
ttgctacaataccaccattaatagcctctg	Protospacer
. * **.******** *************

17. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to NC_041979 (Escherichia coli O157 typing phage 1, complete genome) position: , mismatch: 6, identity: 0.8

caggtataataccacgattaatagcctctt	CRISPR spacer
ttgctacaataccaccattaatagcctctg	Protospacer
. * **.******** *************

18. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to KP869113 (Escherichia coli O157 typing phage 15, partial genome) position: , mismatch: 6, identity: 0.8

caggtataataccacgattaatagcctctt	CRISPR spacer
ttgctacaataccaccattaatagcctctg	Protospacer
. * **.******** *************

19. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to KP869110 (Escherichia coli O157 typing phage 12, complete genome) position: , mismatch: 6, identity: 0.8

caggtataataccacgattaatagcctctt	CRISPR spacer
ttgctacaataccaccattaatagcctctg	Protospacer
. * **.******** *************

20. spacer 1.16|1226505|30|CP033931|CRISPRCasFinder,PILER-CR matches to KJ010489 (Enterococcus phage IME-EFm1, complete genome) position: , mismatch: 6, identity: 0.8

caggatttgctgggattgcacatactgcca	CRISPR spacer
gatgttttgctgggcttgcagatactgcct	Protospacer
 * * ********* ***** ********

21. spacer 1.21|1226890|30|CP033931|CRISPRCasFinder,PILER-CR matches to NC_006128 (Borreliella bavariensis PBi plasmid cp26, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcaatggctaaagacaaaggaaatatt	CRISPR spacer
gatttaatggctaaatataaaggaaatatt	Protospacer
  * .********** *.************

22. spacer 1.3|1225504|30|CP033931|CRISPRCasFinder matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 7, identity: 0.767

tattttttttacttccttcatgtctgtttc	CRISPR spacer
gattttttttacttcctttatttcttaagc	Protospacer
 *****************.** ***    *

23. spacer 1.3|1225504|30|CP033931|CRISPRCasFinder matches to MN694758 (Marine virus AFVG_250M853, complete genome) position: , mismatch: 7, identity: 0.767

tattttttttacttccttcatgtctgtttc	CRISPR spacer
tattttttttacttcgttcattttacctcc	Protospacer
*************** ***** *.  .*.*

24. spacer 1.3|1225504|30|CP033931|CRISPRCasFinder matches to MN694077 (Marine virus AFVG_250M852, complete genome) position: , mismatch: 7, identity: 0.767

tattttttttacttccttcatgtctgtttc	CRISPR spacer
tattttttttacttcgttcattttacctcc	Protospacer
*************** ***** *.  .*.*

25. spacer 1.3|1225504|30|CP033931|CRISPRCasFinder matches to NZ_CP014851 (Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence) position: , mismatch: 7, identity: 0.767

tattttttttacttccttcatgtctgtttc	CRISPR spacer
cgttttttttacttcattcatatctaaatc	Protospacer
..************* *****.***.  **

26. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to MF158043 (Shigella phage Sf16, complete genome) position: , mismatch: 7, identity: 0.767

caggtataataccacgattaatagcctctt	CRISPR spacer
ttgcaataataccaccattaatagcatctg	Protospacer
. *  ********** ********* ***

27. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to MF158044 (Shigella phage Sf18, complete genome) position: , mismatch: 7, identity: 0.767

caggtataataccacgattaatagcctctt	CRISPR spacer
ttgcaataataccaccattaatagcatctg	Protospacer
. *  ********** ********* ***

28. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to MF158044 (Shigella phage Sf18, complete genome) position: , mismatch: 7, identity: 0.767

caggtataataccacgattaatagcctctt	CRISPR spacer
ttgcaataataccaccattaatagcatctg	Protospacer
. *  ********** ********* ***

29. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to MF327003 (Shigella phage Sf14, complete genome) position: , mismatch: 7, identity: 0.767

caggtataataccacgattaatagcctctt	CRISPR spacer
ttgcaataataccaccattaatagcatctg	Protospacer
. *  ********** ********* ***

30. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to MF327005 (Shigella phage Sf19, complete genome) position: , mismatch: 7, identity: 0.767

caggtataataccacgattaatagcctctt	CRISPR spacer
ttgcaataataccaccattaatagcatctg	Protospacer
. *  ********** ********* ***

31. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to NC_042076 (Shigella phage Sf17, complete genome) position: , mismatch: 7, identity: 0.767

caggtataataccacgattaatagcctctt	CRISPR spacer
ttgcaataataccaccattaatagcatctg	Protospacer
. *  ********** ********* ***

32. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to MK562502 (Shigella phage KPS64, complete genome) position: , mismatch: 7, identity: 0.767

caggtataataccacgattaatagcctctt	CRISPR spacer
ttgcaataataccaccattaatagcatctg	Protospacer
. *  ********** ********* ***

33. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to MF158040 (Shigella phage Sf13, complete genome) position: , mismatch: 7, identity: 0.767

caggtataataccacgattaatagcctctt	CRISPR spacer
ttgcaataataccaccattaatagcatctg	Protospacer
. *  ********** ********* ***

34. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to MF158041 (Shigella phage Sf15, complete genome) position: , mismatch: 7, identity: 0.767

caggtataataccacgattaatagcctctt	CRISPR spacer
ttgcaataataccaccattaatagcatctg	Protospacer
. *  ********** ********* ***

35. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to MN342151 (Escherichia phage vB_EcoM_3HA14, complete genome) position: , mismatch: 7, identity: 0.767

caggtataataccacgattaatagcctctt	CRISPR spacer
ttgcaataataccaccattaatagcatctg	Protospacer
. *  ********** ********* ***

36. spacer 1.10|1226043|30|CP033931|CRISPRCasFinder matches to NC_041831 (Campylobacter phage vB_CcoM-IBB_35 clone Contig3, complete sequence) position: , mismatch: 7, identity: 0.767

ctatccacagatatcttccacttatcacca	CRISPR spacer
tcattatcagaaattttccacttatcacca	Protospacer
..**.  **** **.***************

37. spacer 1.12|1226197|30|CP033931|CRISPRCasFinder matches to NC_027390 (Proteus phage PM 93, complete genome) position: , mismatch: 7, identity: 0.767

acaacaacaattatatcatatgtcacacaa	CRISPR spacer
acaacaacatttatatcatgtgttaaggac	Protospacer
********* *********.***.* . *

38. spacer 1.21|1226890|30|CP033931|CRISPRCasFinder,PILER-CR matches to AP014260 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S30-C66, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

cctgcaatggctaaagacaaaggaaatatt	CRISPR spacer
gtaacaatggctaaagaaaaaggaattaat	Protospacer
 . .************* ******* ** *

39. spacer 1.21|1226890|30|CP033931|CRISPRCasFinder,PILER-CR matches to NZ_KT897280 (Clostridium botulinum strain FI1111E1 plasmid pFI1111E1, complete sequence) position: , mismatch: 7, identity: 0.767

cctgcaatggctaaagacaaaggaaatatt	CRISPR spacer
tctgcaatggctaaaaacaaagaactttta	Protospacer
.**************.******.*  * *

40. spacer 1.21|1226890|30|CP033931|CRISPRCasFinder,PILER-CR matches to NZ_KT897275 (Clostridium botulinum strain IFR 12/29 plasmid p12/29, complete sequence) position: , mismatch: 7, identity: 0.767

cctgcaatggctaaagacaaaggaaatatt	CRISPR spacer
tctgcaatggctaaaaacaaagaactttta	Protospacer
.**************.******.*  * *

41. spacer 1.21|1226890|30|CP033931|CRISPRCasFinder,PILER-CR matches to NZ_KT897278 (Clostridium botulinum strain FWSKR40E1 plasmid pFWSKR40E1, complete sequence) position: , mismatch: 7, identity: 0.767

cctgcaatggctaaagacaaaggaaatatt	CRISPR spacer
tctgcaatggctaaaaacaaagaactttta	Protospacer
.**************.******.*  * *

42. spacer 1.21|1226890|30|CP033931|CRISPRCasFinder,PILER-CR matches to NZ_KT897279 (Clostridium botulinum strain SWKR38E2 plasmid pSWKR38E2, complete sequence) position: , mismatch: 7, identity: 0.767

cctgcaatggctaaagacaaaggaaatatt	CRISPR spacer
tctgcaatggctaaaaacaaagaactttta	Protospacer
.**************.******.*  * *

43. spacer 1.3|1225504|30|CP033931|CRISPRCasFinder matches to CP024686 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence) position: , mismatch: 8, identity: 0.733

tattttttttacttccttcatgtctgtttc	CRISPR spacer
tattttttttacttttttcatgtaattcaa	Protospacer
**************..*******   *.

44. spacer 1.3|1225504|30|CP033931|CRISPRCasFinder matches to NZ_AP018256 (Calothrix sp. NIES-4071 plasmid plasmid1 DNA, complete genome) position: , mismatch: 8, identity: 0.733

tattttttttacttccttcatgtctgtttc	CRISPR spacer
ttttatttttactttcttcatgtcttggcg	Protospacer
* ** *********.**********   .

45. spacer 1.5|1225658|30|CP033931|CRISPRCasFinder matches to MT774386 (CrAssphage cr110_1, complete genome) position: , mismatch: 8, identity: 0.733

caggtataataccacgattaatagcctctt	CRISPR spacer
gaaaatcactaccacgattaatagcatctt	Protospacer
 *..  .* **************** ****

46. spacer 1.8|1225889|30|CP033931|CRISPRCasFinder matches to MT661596 (Proteus phage 10, complete genome) position: , mismatch: 8, identity: 0.733

cggcgggaacttatgatgaattaaggaagt	CRISPR spacer
gtaatgtaacttctaatgaattaaggaagt	Protospacer
  .  * ***** *.***************

47. spacer 1.11|1226120|30|CP033931|CRISPRCasFinder matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 8, identity: 0.733

gatatagcaaatatataacattgttcataa	CRISPR spacer
acaattgcaaatatagaacattgttctgat	Protospacer
.  ** ********* **********  *

48. spacer 1.13|1226274|30|CP033931|CRISPRCasFinder matches to MG550111 (Halorubrum pleomorphic virus 10, complete genome) position: , mismatch: 8, identity: 0.733

gcgatggacaaatcattattttatacgcta	CRISPR spacer
cccccggagcaatcattattttatacgcgg	Protospacer
 *  .***  ****************** .

49. spacer 1.13|1226274|30|CP033931|CRISPRCasFinder matches to MG550113 (Halorubrum pleomorphic virus 11, complete genome) position: , mismatch: 8, identity: 0.733

gcgatggacaaatcattattttatacgcta	CRISPR spacer
cccccggagcaatcattattttatacgcgg	Protospacer
 *  .***  ****************** .

50. spacer 1.13|1226274|30|CP033931|CRISPRCasFinder matches to MG550110 (Halorubrum pleomorphic virus 12, complete genome) position: , mismatch: 8, identity: 0.733

gcgatggacaaatcattattttatacgcta	CRISPR spacer
cccccggagcaatcattattttatacgcgg	Protospacer
 *  .***  ****************** .

51. spacer 1.14|1226351|30|CP033931|CRISPRCasFinder,PILER-CR matches to NC_018501 (Bacillus thuringiensis HD-771 plasmid p02, complete sequence) position: , mismatch: 8, identity: 0.733

tagggtcctgtactaatacacgagagccgt	CRISPR spacer
gcatttcctgtacgaatatacgagagccat	Protospacer
  .  ******** ****.*********.*

52. spacer 1.17|1226582|30|CP033931|CRISPRCasFinder,PILER-CR matches to NZ_CP049159 (Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence) position: , mismatch: 8, identity: 0.733

gaattgaagtttttgaagaagaccagaaaa	CRISPR spacer
tgcatgaagtttttgaagaagagcagatct	Protospacer
 .  ****************** ****

53. spacer 1.17|1226582|30|CP033931|CRISPRCasFinder,PILER-CR matches to NZ_CP049320 (Caballeronia sp. SBC2 plasmid pSBC2-4, complete sequence) position: , mismatch: 8, identity: 0.733

gaattgaagtttttgaagaagaccagaaaa	CRISPR spacer
tgcatgaagtttttgaagaagagcagatct	Protospacer
 .  ****************** ****

54. spacer 1.17|1226582|30|CP033931|CRISPRCasFinder,PILER-CR matches to NC_008607 (Pelobacter propionicus DSM 2379 plasmid pPRO1, complete sequence) position: , mismatch: 8, identity: 0.733

gaattgaagtttttgaagaagaccagaaaa	CRISPR spacer
ttattgaagttttggaaggagaccaggctc	Protospacer
  *********** ****.*******.

55. spacer 1.17|1226582|30|CP033931|CRISPRCasFinder,PILER-CR matches to NZ_CP048757 (Campylobacter jejuni strain ZS006 plasmid pCJ41K-01, complete sequence) position: , mismatch: 8, identity: 0.733

gaattgaagtttttgaagaagaccagaaaa	CRISPR spacer
agtgtgaagtttttgaagaagataagagat	Protospacer
..  ******************. ***.*

56. spacer 1.17|1226582|30|CP033931|CRISPRCasFinder,PILER-CR matches to EU874396 (Bacillus phage IEBH, complete genome) position: , mismatch: 8, identity: 0.733

gaattgaagtttttgaagaagaccagaaaa	CRISPR spacer
atattgaagtttttgataaagaccaaattt	Protospacer
. ************** .*******.*

57. spacer 1.17|1226582|30|CP033931|CRISPRCasFinder,PILER-CR matches to NC_031055 (Bacillus phage PfEFR-5, complete genome) position: , mismatch: 8, identity: 0.733

gaattgaagtttttgaagaagaccagaaaa	CRISPR spacer
atattgaagtttttgataaagaccaaattt	Protospacer
. ************** .*******.*

58. spacer 1.17|1226582|30|CP033931|CRISPRCasFinder,PILER-CR matches to KT725776 (Bacillus phage vB_BceS-MY192, partial genome) position: , mismatch: 8, identity: 0.733

gaattgaagtttttgaagaagaccagaaaa	CRISPR spacer
atattgaagtttttgataaagaccaaattt	Protospacer
. ************** .*******.*

59. spacer 1.17|1226582|30|CP033931|CRISPRCasFinder,PILER-CR matches to NC_048641 (Bacillus phage PfEFR-4, complete genome) position: , mismatch: 8, identity: 0.733

gaattgaagtttttgaagaagaccagaaaa	CRISPR spacer
atattgaagtttttgataaagaccaaattt	Protospacer
. ************** .*******.*

60. spacer 1.21|1226890|30|CP033931|CRISPRCasFinder,PILER-CR matches to MN698240 (Pelagibacter phage HTVC026P, complete genome) position: , mismatch: 8, identity: 0.733

cctgcaatggctaaagacaaaggaaatatt	CRISPR spacer
gttacaatggctaaagaaaaaggaacaaca	Protospacer
 .*.************* *******  *.

61. spacer 1.3|1225504|30|CP033931|CRISPRCasFinder matches to NZ_CP039845 (Acetobacter pasteurianus strain CICC 22518 plasmid pAP22518-1, complete sequence) position: , mismatch: 9, identity: 0.7

tattttttttacttccttcatgtctgtttc	CRISPR spacer
tattttttttactcccttcataggggagat	Protospacer
*************.*******.   *   .

62. spacer 1.13|1226274|30|CP033931|CRISPRCasFinder matches to NZ_CP041067 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_3, complete sequence) position: , mismatch: 9, identity: 0.7

gcgatggacaaatcattattttatacgcta	CRISPR spacer
tttttggacaaatcattaatttataccaat	Protospacer
 .  ************** *******

63. spacer 1.17|1226582|30|CP033931|CRISPRCasFinder,PILER-CR matches to NC_019730 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.02, complete sequence) position: , mismatch: 9, identity: 0.7

gaattgaagtttttgaagaagaccagaaaa	CRISPR spacer
ttgcccgagttgttgaagaacaccagaaaa	Protospacer
  ... .**** ******** *********

64. spacer 1.21|1226890|30|CP033931|CRISPRCasFinder,PILER-CR matches to CP046513 (Bacillus cereus strain JHU plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.7

cctgcaatggctaaagacaaaggaaatatt	CRISPR spacer
taaataatcgcaaaagacaaaggaaatagc	Protospacer
.  ..*** ** **************** .

65. spacer 1.3|1225504|30|CP033931|CRISPRCasFinder matches to MH791411 (UNVERIFIED: Escherichia phage Ecwhy_1, complete genome) position: , mismatch: 10, identity: 0.667

tattttttttacttccttcatgtctgtttc	CRISPR spacer
ctgcttttgtacttccttcatgtcttcgaa	Protospacer
.  .**** **************** .

66. spacer 1.18|1226659|30|CP033931|CRISPRCasFinder,PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 10, identity: 0.667

cgtcaaaaagtcctgaaaggcatcgccgcc	CRISPR spacer
ttcatggaattcctgaaaggcatcgccgat	Protospacer
. .  ..** ****************** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1195024 : 1214503

Bacillus_phage(66.67%)

bacteriocin,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZB33135.1\|1195024_1195726_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AZB36287.1\|1195730_1196489_+	peroxide stress protein YaaA	NA	NA	NA	NA
AZB33136.1\|1196489_1197338_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
AZB33137.1\|1197381_1197741_+	DUF4180 domain-containing protein	NA	NA	NA	NA
AZB33138.1\|1198293_1198866_+	hypothetical protein	NA	NA	NA	NA
AZB33139.1\|1198873_1200415_+	hypothetical protein	NA	NA	NA	NA
AZB36288.1\|1200463_1201435_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
AZB33140.1\|1201431_1202217_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AZB33141.1\|1202375_1203464_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AZB33142.1\|1203495_1204137_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
AZB33143.1\|1204178_1206767_-	DNA gyrase/topoisomerase IV subunit A	A0A127AYR4	Bacillus_phage	6.9e-27	38.9
AZB33144.1\|1206775_1207192_-	hypothetical protein	NA	NA	NA	NA
AZB33145.1\|1207279_1209169_-	type IIA DNA topoisomerase subunit B	A0A172JHT4	Bacillus_phage	1.4e-66	31.9
AZB36289.1\|1209343_1209886_-	DUF2867 domain-containing protein	NA	NA	NA	NA
AZB33146.1\|1210190_1211339_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
AZB36290.1\|1211492_1211663_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
AZB33147.1\|1211693_1211888_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
AZB33148.1\|1211913_1212111_+	hypothetical protein	NA	NA	NA	NA
AZB33149.1\|1212186_1212951_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	8.9e-15	27.0
AZB33150.1\|1213038_1213977_-	AraC family transcriptional regulator	NA	NA	NA	NA
AZB33151.1\|1214122_1214329_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
AZB33152.1\|1214344_1214503_+\|bacteriocin	bacteriocin	NA	NA	NA	NA

DBSCAN-SWA_2

2989739 : 3029716

Klebsiella_phage(50.0%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZB34555.1\|2989739_2990465_+\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	NA	NA	NA	NA
AZB34556.1\|2990464_2990836_+	ribonuclease P protein component	NA	NA	NA	NA
AZB34557.1\|2991102_2991708_+	DUF4126 domain-containing protein	NA	NA	NA	NA
AZB34558.1\|2991753_2993898_-	hypothetical protein	NA	NA	NA	NA
AZB36385.1\|2993899_2994451_-	hypothetical protein	NA	NA	NA	NA
AZB34559.1\|2994440_2995148_-	hypothetical protein	NA	NA	NA	NA
AZB34560.1\|2995163_2996453_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
AZB34561.1\|2996489_2997287_-	hypothetical protein	NA	NA	NA	NA
AZB34562.1\|2997258_2997774_-	hypothetical protein	NA	NA	NA	NA
AZB36386.1\|2997783_2999220_-\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
AZB34563.1\|2999389_2999803_-	hypothetical protein	NA	NA	NA	NA
AZB34564.1\|2999833_3000313_-	hypothetical protein	NA	NA	NA	NA
AZB34565.1\|3000450_3002184_-	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
AZB34566.1\|3002431_3003637_-	diaminopimelate decarboxylase	NA	NA	NA	NA
AZB34567.1\|3003894_3005118_-	3'-5' exonuclease	NA	NA	NA	NA
AZB34568.1\|3005256_3006783_-	DUF853 family protein	A0A248XCZ8	Klebsiella_phage	5.1e-70	38.2
AZB34569.1\|3007133_3008543_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
AZB34570.1\|3008547_3008925_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
AZB34571.1\|3008943_3009243_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	6.1e-12	45.7
AZB34572.1\|3009283_3010036_-	nitrilase family protein	NA	NA	NA	NA
AZB34573.1\|3010224_3010665_+	hypothetical protein	NA	NA	NA	NA
AZB34574.1\|3010771_3012253_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
AZB34575.1\|3012548_3013487_-\|transposase	DDE transposase	NA	NA	NA	NA
AZB34576.1\|3013506_3013860_-\|transposase	transposase	NA	NA	NA	NA
AZB34577.1\|3014703_3015642_-\|transposase	DDE transposase	NA	NA	NA	NA
AZB34578.1\|3015661_3016015_-\|transposase	transposase	NA	NA	NA	NA
AZB34579.1\|3023149_3025720_+	carboxypeptidase-like regulatory domain-containing protein	NA	NA	NA	NA
AZB34580.1\|3025868_3027086_-	T9SS C-terminal target domain-containing protein	NA	NA	NA	NA
AZB34581.1\|3027796_3028054_-	50S ribosomal protein L27	NA	NA	NA	NA
AZB34582.1\|3028066_3028645_-	50S ribosomal protein L21	NA	NA	NA	NA
AZB34583.1\|3028828_3029716_+\|protease	metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_3

3131375 : 3139108

Cellulophaga_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZB34664.1\|3131375_3132122_-	serine/threonine protein phosphatase	S0A0Y6	Cellulophaga_phage	6.8e-44	37.6
AZB34665.1\|3132200_3132743_-	RNA 2'-phosphotransferase	A0A2R2ZGT8	Clostridioides_phage	2.3e-49	55.6
AZB34666.1\|3132714_3133686_-	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	9.8e-43	34.0
AZB34667.1\|3133685_3134372_-	NAD-dependent deacylase	R9TG77	Vibrio_phage	7.2e-32	41.4
AZB36395.1\|3134376_3134883_-	O-acetyl-ADP-ribose deacetylase	A0A0K1L687	Scale_drop_disease_virus	1.4e-32	52.1
AZB34668.1\|3135025_3135619_-	DUF4291 domain-containing protein	NA	NA	NA	NA
AZB36396.1\|3135625_3136102_-	Appr-1-p processing protein	A0A2L1IVW3	Streptomyces_phage	9.7e-28	43.9
AZB36397.1\|3136181_3137252_-	adenylosuccinate synthetase	NA	NA	NA	NA
AZB34669.1\|3137297_3138152_-	hypothetical protein	NA	NA	NA	NA
AZB34670.1\|3138154_3138490_-	hypothetical protein	NA	NA	NA	NA
AZB34671.1\|3138562_3139108_-	2OG-Fe(II) oxygenase	M1PY53	Moumouvirus	5.3e-14	27.5

DBSCAN-SWA_4

4049446 : 4057126

Beihai_hepe-like_virus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZB35391.1\|4049446_4049818_+	hypothetical protein	A0A142EZZ6	Stenotrophomonas_phage	8.9e-21	47.9
AZB35392.1\|4049817_4050390_+	DinB family protein	NA	NA	NA	NA
AZB35393.1\|4050386_4051400_+	RNA ligase, Rnl2 family	A0A0G2SSQ5	Proteus_phage	1.5e-38	31.8
AZB35394.1\|4051720_4052680_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	8.5e-23	27.7
AZB35395.1\|4052791_4053733_+	peptidase	NA	NA	NA	NA
AZB35396.1\|4053886_4054432_+	DNA polymerase III	A0A1L3KJF4	Beihai_hepe-like_virus	2.1e-10	31.1
AZB36448.1\|4054500_4055052_+	DNA polymerase III	A0A1L3KJF4	Beihai_hepe-like_virus	1.2e-10	31.2
AZB35397.1\|4055152_4057126_+	AAA family ATPase	H7BUJ6	unidentified_phage	5.7e-82	41.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP033931

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection