CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033811	Chryseobacterium arthrosphaerae strain FDAARGOS_519 chromosome, complete genome	0 crisprs	DEDDh,cas3,PD-DExK,WYL,RT,csa3,cas2,cas1,cas9,c2c10_CAS-V-U3	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

92977 : 132325

Tupanvirus(50.0%)

tail,protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYZ14898.1\|92977_93982_-\|protease	zinc metalloprotease	A0A2K9KZL9	Tupanvirus	6.4e-21	32.6
AYZ10508.1\|94391_95408_-\|protease	zinc metalloprotease	A0A2K9KZL9	Tupanvirus	1.6e-19	30.3
AYZ10509.1\|95855_96866_-\|protease	zinc metalloprotease	A0A2K9L5D3	Tupanvirus	2.4e-20	29.2
AYZ10510.1\|97118_97757_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	6.9e-05	33.9
AYZ10511.1\|97753_98539_-	two-component sensor histidine kinase	NA	NA	NA	NA
AYZ10512.1\|98517_99162_-	hypothetical protein	NA	NA	NA	NA
AYZ14899.1\|99188_99728_-	hypothetical protein	NA	NA	NA	NA
AYZ10513.1\|100298_101111_-	hypothetical protein	NA	NA	NA	NA
AYZ10514.1\|101208_103803_-	ATP-dependent chaperone ClpB	A0A223W0B1	Agrobacterium_phage	2.6e-122	34.4
AYZ10515.1\|104081_105215_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.7e-12	26.4
AYZ10516.1\|105221_106664_+	hypothetical protein	NA	NA	NA	NA
AYZ10517.1\|106669_107248_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AYZ10518.1\|107423_108740_+	phenylacetate--CoA ligase	NA	NA	NA	NA
AYZ10519.1\|108739_109825_+	phenylacetate-CoA oxygenase	NA	NA	NA	NA
AYZ10520.1\|109940_110879_+	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA
AYZ10521.1\|110980_111262_+	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA
AYZ10522.1\|111332_112082_+	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA
AYZ10523.1\|112160_114980_+	T9SS C-terminal target domain-containing protein	NA	NA	NA	NA
AYZ10524.1\|115001_115469_+	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA
AYZ10525.1\|115626_117435_+	hypothetical protein	NA	NA	NA	NA
AYZ10526.1\|117640_118441_+	enoyl-CoA hydratase	NA	NA	NA	NA
AYZ10527.1\|118521_119655_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA
AYZ10528.1\|119727_120036_+	hypothetical protein	NA	NA	NA	NA
AYZ14900.1\|120041_120455_+	hotdog fold thioesterase	NA	NA	NA	NA
AYZ10529.1\|120509_121226_+	hypothetical protein	NA	NA	NA	NA
AYZ10530.1\|121348_122554_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
AYZ10531.1\|122669_123263_+	transferase hexapeptide repeat family protein	NA	NA	NA	NA
AYZ10532.1\|123333_123912_+\|transposase	transposase	NA	NA	NA	NA
AYZ10533.1\|123980_126476_+	phenylacetic acid degradation bifunctional protein PaaZ	NA	NA	NA	NA
AYZ10534.1\|126570_127266_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AYZ10535.1\|127407_128094_+	SMUG2 DNA glycosylase family protein	NA	NA	NA	NA
AYZ10536.1\|128147_130829_+	DEAD/DEAH box helicase	NA	NA	NA	NA
AYZ10537.1\|130914_131736_-	T9SS C-terminal target domain-containing protein	NA	NA	NA	NA
AYZ10538.1\|131773_132325_-\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_2

1277596 : 1288800

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYZ11477.1\|1277596_1278775_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.6e-71	43.6
AYZ11478.1\|1278777_1280988_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	1.3e-13	37.7
AYZ11479.1\|1281096_1281462_-	hypothetical protein	NA	NA	NA	NA
AYZ11480.1\|1281764_1283672_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	3.5e-84	39.7
AYZ11481.1\|1283731_1285618_-	propionyl-CoA synthetase	A0A2H4PQU7	Staphylococcus_phage	9.7e-63	32.5
AYZ11482.1\|1285725_1286085_-	response regulator	W8CYM9	Bacillus_phage	4.7e-11	31.9
AYZ11483.1\|1286094_1288800_-	sodium:proline symporter	W8CYF6	Bacillus_phage	2.9e-20	30.2

DBSCAN-SWA_3

2934050 : 2998295

Flavobacterium_phage(11.11%)

tail,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYZ12898.1\|2934050_2936051_+\|tail	phage tail tape measure protein	A0A218M786	Flavobacterium_phage	3.1e-35	25.9
AYZ12899.1\|2936052_2936574_+	hypothetical protein	NA	NA	NA	NA
AYZ12900.1\|2936570_2937083_+	hypothetical protein	NA	NA	NA	NA
AYZ12901.1\|2937079_2937361_-	hypothetical protein	NA	NA	NA	NA
AYZ12902.1\|2937395_2937905_-	hypothetical protein	NA	NA	NA	NA
AYZ12903.1\|2937901_2938231_-	hypothetical protein	NA	NA	NA	NA
AYZ12904.1\|2938233_2938545_-	hypothetical protein	NA	NA	NA	NA
AYZ12905.1\|2938541_2939015_-	M15 family peptidase	M1Q723	Cellulophaga_phage	1.3e-32	45.3
AYZ12906.1\|2939019_2939259_-	hypothetical protein	NA	NA	NA	NA
AYZ12907.1\|2939325_2939793_-	hypothetical protein	NA	NA	NA	NA
AYZ12908.1\|2939963_2940221_-	hypothetical protein	NA	NA	NA	NA
AYZ12909.1\|2940241_2940694_-	hypothetical protein	NA	NA	NA	NA
AYZ12910.1\|2940756_2941116_-	hypothetical protein	A0A1C9LW59	Vibrio_phage	5.6e-12	44.2
AYZ12911.1\|2941188_2941509_-	hypothetical protein	NA	NA	NA	NA
AYZ12912.1\|2941525_2942113_-	hypothetical protein	NA	NA	NA	NA
AYZ12913.1\|2942130_2942451_-	hypothetical protein	NA	NA	NA	NA
AYZ12914.1\|2942462_2942768_-	hypothetical protein	NA	NA	NA	NA
AYZ12915.1\|2942937_2943657_-	DUF3164 family protein	NA	NA	NA	NA
AYZ12916.1\|2943808_2944180_-	hypothetical protein	NA	NA	NA	NA
AYZ12917.1\|2944182_2945106_-	ATP-binding protein	NA	NA	NA	NA
AYZ12918.1\|2945109_2946291_-	hypothetical protein	NA	NA	NA	NA
AYZ12919.1\|2946361_2947240_-	hypothetical protein	NA	NA	NA	NA
AYZ12920.1\|2947431_2947617_-	XRE family transcriptional regulator	NA	NA	NA	NA
AYZ12921.1\|2947738_2948488_+	LexA family transcriptional regulator	S5MAC0	Brevibacillus_phage	4.3e-06	35.1
AYZ12922.1\|2949316_2949499_-	hypothetical protein	NA	NA	NA	NA
AYZ12923.1\|2949708_2950272_-\|transposase	transposase	NA	NA	NA	NA
AYZ12924.1\|2950503_2950956_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AYZ12925.1\|2951045_2951534_+	N-acetyltransferase	NA	NA	NA	NA
AYZ12926.1\|2951542_2952721_-	hypothetical protein	NA	NA	NA	NA
AYZ12927.1\|2952943_2956447_-	T9SS C-terminal target domain-containing protein	NA	NA	NA	NA
AYZ12928.1\|2956466_2957627_-	hypothetical protein	NA	NA	NA	NA
AYZ12929.1\|2958324_2958672_+	hypothetical protein	NA	NA	NA	NA
AYZ12930.1\|2958740_2959412_-	hypothetical protein	NA	NA	NA	NA
AYZ12931.1\|2959734_2962137_+	hypothetical protein	NA	NA	NA	NA
AYZ12932.1\|2962410_2963016_+	hypothetical protein	NA	NA	NA	NA
AYZ12933.1\|2963317_2963500_+	hypothetical protein	NA	NA	NA	NA
AYZ12934.1\|2963549_2963990_-	lysozyme	I2GUG4	Acinetobacter_phage	2.5e-22	44.4
AYZ12935.1\|2963986_2964511_-	hypothetical protein	F5A395	Riemerella_phage	3.4e-10	29.3
AYZ12936.1\|2964719_2966030_-	ATP-binding protein	K9MCS8	Sulfolobus_virus	5.1e-10	32.6
AYZ12937.1\|2966239_2967100_-	hypothetical protein	NA	NA	NA	NA
AYZ12938.1\|2967251_2968106_-	hypothetical protein	NA	NA	NA	NA
AYZ12939.1\|2968232_2969090_-	hypothetical protein	NA	NA	NA	NA
AYZ12940.1\|2969515_2969926_-	hypothetical protein	NA	NA	NA	NA
AYZ12941.1\|2970178_2970814_-	hypothetical protein	NA	NA	NA	NA
AYZ12942.1\|2970871_2971426_-	hypothetical protein	NA	NA	NA	NA
AYZ12943.1\|2971428_2975352_-	hypothetical protein	NA	NA	NA	NA
AYZ12944.1\|2975727_2976108_-	hypothetical protein	NA	NA	NA	NA
AYZ12945.1\|2977753_2978419_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AYZ12946.1\|2978493_2979381_-	hypothetical protein	NA	NA	NA	NA
AYZ12947.1\|2979537_2983074_-	hypothetical protein	NA	NA	NA	NA
AYZ12948.1\|2983156_2986288_-	hypothetical protein	NA	NA	NA	NA
AYZ12949.1\|2986287_2989131_-	hypothetical protein	NA	NA	NA	NA
AYZ12950.1\|2989155_2992206_-\|plate	phage baseplate protein	NA	NA	NA	NA
AYZ12951.1\|2992295_2992706_-	hypothetical protein	A0A0E3FJY3	Synechococcus_phage	4.4e-05	31.9
AYZ12952.1\|2992856_2993150_-	type VI secretion protein	NA	NA	NA	NA
AYZ12953.1\|2993149_2994895_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
AYZ12954.1\|2994896_2995613_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
AYZ12955.1\|2995974_2996442_-\|tail	phage tail protein	NA	NA	NA	NA
AYZ12956.1\|2996444_2996876_-\|tail	phage tail protein	A0A059XEM3	uncultured_phage	5.7e-27	49.2
AYZ12957.1\|2996909_2998295_-\|tail	phage tail sheath family protein	NA	NA	NA	NA

DBSCAN-SWA_4

4748772 : 4759261

Cellulophaga_phage(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYZ14370.1\|4748772_4749531_-	serine/threonine protein phosphatase	S0A0Y6	Cellulophaga_phage	1.6e-45	38.4
AYZ14371.1\|4749527_4749749_-	hypothetical protein	NA	NA	NA	NA
AYZ14372.1\|4749745_4750288_-	RNA 2'-phosphotransferase	A0A2R2ZGT8	Clostridioides_phage	6.9e-46	51.1
AYZ14373.1\|4750284_4751361_-	hypothetical protein	NA	NA	NA	NA
AYZ14374.1\|4751432_4751909_-	hypothetical protein	NA	NA	NA	NA
AYZ14375.1\|4751908_4752853_-	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	1.9e-43	34.8
AYZ15147.1\|4752852_4753539_-	NAD-dependent deacylase	R9TG77	Vibrio_phage	4.6e-31	40.9
AYZ14376.1\|4753594_4754116_-	O-acetyl-ADP-ribose deacetylase	A0A0K1L687	Scale_drop_disease_virus	2.7e-31	44.4
AYZ14377.1\|4754112_4754928_-	TIGR02452 family protein	G3MBH6	Bacillus_virus	1.0e-48	41.6
AYZ14378.1\|4754930_4755347_-	ADP-ribosylation/crystallin J1	NA	NA	NA	NA
AYZ14379.1\|4755358_4755835_-	Appr-1-p processing protein	A0A2L1IVW3	Streptomyces_phage	6.1e-30	44.9
AYZ14380.1\|4755912_4756986_-	adenylosuccinate synthetase	NA	NA	NA	NA
AYZ14381.1\|4757067_4757922_-	hypothetical protein	NA	NA	NA	NA
AYZ14382.1\|4757924_4758260_-	hypothetical protein	NA	NA	NA	NA
AYZ14383.1\|4758308_4758710_-	hypothetical protein	NA	NA	NA	NA
AYZ15148.1\|4758712_4759261_-	oxidoreductase, 2OG-Fe(II) oxygenase	M1PY53	Moumouvirus	9.2e-14	26.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage