CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033710	Yersinia pseudotuberculosis strain FDAARGOS_582 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0
CP033711	Yersinia pseudotuberculosis strain FDAARGOS_582 chromosome, complete genome	0 crisprs	cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,DinG,csa3	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

248003 : 302380

Escherichia_phage(25.0%)

holin,lysis,protease,tail,transposase,terminase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYX13978.1\|248003_248216_-	KTSC domain-containing protein	A0A0K1LMB5	Caulobacter_phage	9.9e-09	42.0
AYX13979.1\|248748_249951_+	DUF4102 domain-containing protein	I6R9B6	Salmonella_phage	1.2e-135	56.8
AYX13980.1\|249914_250157_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AYX13981.1\|250153_250396_-	hypothetical protein	A0A2H4J398	uncultured_Caudovirales_phage	1.5e-13	53.9
AYX13982.1\|250430_250634_-	hypothetical protein	NA	NA	NA	NA
AYX13983.1\|251040_251328_-	hypothetical protein	NA	NA	NA	NA
AYX13984.1\|251317_251530_-	hypothetical protein	NA	NA	NA	NA
AYX13985.1\|251533_251782_-	hypothetical protein	NA	NA	NA	NA
AYX13986.1\|251781_252486_-	hypothetical protein	A0A077SLK5	Escherichia_phage	3.2e-11	54.9
AYX13987.1\|252482_252719_-	hypothetical protein	NA	NA	NA	NA
AYX13988.1\|252720_253146_-	hypothetical protein	NA	NA	NA	NA
AYX13989.1\|253189_253372_-	DUF1317 family protein	A0A1U8QQC1	Enterobacteria_phage	1.3e-09	59.6
AYX13990.1\|253368_254304_-	recombinase RecT	A0A193GYL3	Enterobacter_phage	1.9e-107	62.5
AYX13991.1\|254296_255115_-	exodeoxyribonuclease VIII	E5AGE0	Erwinia_phage	1.1e-119	73.3
AYX13992.1\|255114_255408_-	hypothetical protein	NA	NA	NA	NA
AYX13993.1\|255532_255664_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	6.3e-06	59.5
AYX13994.1\|255682_256711_-	hypothetical protein	K7P6J9	Enterobacteria_phage	1.4e-31	65.3
AYX13995.1\|256789_256990_-	hypothetical protein	NA	NA	NA	NA
AYX13996.1\|256993_257233_-	hypothetical protein	A0A2H4JA69	uncultured_Caudovirales_phage	1.2e-15	63.9
AYX13997.1\|257346_257694_-	hypothetical protein	A0A0K2FII1	Escherichia_phage	4.0e-07	35.8
AYX13998.1\|258076_258283_+	hypothetical protein	A0A2H5BFH9	Salmonella_phage	8.4e-13	58.2
AYX13999.1\|258661_259186_-	hypothetical protein	A0A0N7BTU4	Escherichia_phage	1.1e-24	37.7
AYX17713.1\|259368_260055_-	helix-turn-helix transcriptional regulator	A0A2D1GM27	Escherichia_phage	4.0e-67	54.8
AYX14000.1\|260213_260444_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.0e-06	47.1
AYX14001.1\|260553_260850_+	hypothetical protein	A2SY75	Escherichia_phage	6.9e-24	64.3
AYX14002.1\|261016_261886_+	DNA replication protein	E5AGE9	Erwinia_phage	1.5e-39	58.5
AYX14003.1\|261887_263225_+	DNA helicase	A0A2I7S0U1	Vibrio_phage	1.2e-78	36.9
AYX14004.1\|263237_263609_+	hypothetical protein	NA	NA	NA	NA
AYX14005.1\|263605_263791_+	hypothetical protein	R9TNE4	Aeromonas_phage	2.2e-12	56.7
AYX17714.1\|264096_264303_+	DUF551 domain-containing protein	NA	NA	NA	NA
AYX14006.1\|264295_264757_+	recombination protein NinB	I6R9D0	Salmonella_phage	9.3e-44	56.7
AYX14007.1\|264874_265468_+	recombination protein NinG	A0A2R2Z332	Escherichia_phage	8.9e-39	44.1
AYX14008.1\|265464_266082_+	antiterminator	M1FPN0	Enterobacteria_phage	2.1e-59	69.1
AYX14009.1\|266066_266324_-	hypothetical protein	NA	NA	NA	NA
AYX14010.1\|266670_266949_-	endoribonuclease GhoS	A9YWZ2	Burkholderia_phage	3.8e-08	34.5
AYX17715.1\|267135_267468_+\|holin	phage holin, lambda family	Q2A0C6	Sodalis_phage	5.4e-17	41.0
AYX17716.1\|267460_267853_+	M15 family peptidase	K0NZV5	Escherichia_virus	5.5e-37	63.1
AYX14011.1\|267849_268305_+\|lysis	lysis protein	A5LH84	Enterobacteria_phage	6.9e-23	41.3
AYX14012.1\|268571_269594_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	7.0e-201	99.7
AYX14013.1\|269590_270373_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.9e-139	99.6
AYX14014.1\|270804_271281_+	Rha family transcriptional regulator	A0A1R3Y613	Salmonella_virus	1.4e-63	76.8
AYX14015.1\|271705_272356_+	hypothetical protein	G8C7P2	Escherichia_phage	2.5e-79	67.9
AYX14016.1\|272352_273915_+\|terminase	terminase	G8C7P3	Escherichia_phage	1.1e-269	83.1
AYX14017.1\|273914_275303_+	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	6.5e-133	52.8
AYX14018.1\|275303_276416_+	hypothetical protein	I6PD76	Cronobacter_phage	6.0e-121	58.2
AYX14019.1\|276537_277311_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.8e-69	62.3
AYX14020.1\|277324_278530_+	hypothetical protein	A0A1B0VMF8	Pseudomonas_phage	1.8e-142	79.2
AYX14021.1\|278529_279060_+	hypothetical protein	G8C7P9	Escherichia_phage	9.1e-27	46.1
AYX14022.1\|279056_279311_+	hypothetical protein	J9Q7U0	Salmonella_phage	2.2e-18	53.1
AYX14023.1\|279312_279663_+	hypothetical protein	I6PD77	Cronobacter_phage	6.9e-31	56.0
AYX14024.1\|279664_280261_+	hypothetical protein	G8C7Q1	Escherichia_phage	1.7e-42	49.0
AYX14025.1\|280257_280665_+	hypothetical protein	NA	NA	NA	NA
AYX14026.1\|280730_281651_+\|tail	phage tail protein	I6PBN6	Cronobacter_phage	4.4e-61	49.1
AYX14027.1\|281663_281975_+	hypothetical protein	I6PDG2	Cronobacter_phage	1.4e-30	58.3
AYX14028.1\|282022_282283_+	hypothetical protein	A0A0S2SY90	Pseudomonas_phage	3.7e-13	50.0
AYX14029.1\|282283_285787_+\|tail	phage tail tape measure protein	K7PMB9	Enterobacterial_phage	1.4e-118	33.3
AYX14030.1\|285789_286131_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.7e-21	50.0
AYX14031.1\|286304_287057_+\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	9.4e-102	67.7
AYX14032.1\|287059_287764_+	peptidase P60	K7P6F5	Enterobacteria_phage	1.3e-108	75.3
AYX14033.1\|288056_288632_+	DUF4065 domain-containing protein	NA	NA	NA	NA
AYX14034.1\|288628_289030_+	hypothetical protein	NA	NA	NA	NA
AYX17717.1\|289073_289484_-	hypothetical protein	A0A077K9U2	Edwardsiella_phage	5.6e-16	41.5
AYX17718.1\|289660_289960_-	hypothetical protein	NA	NA	NA	NA
AYX14035.1\|290078_290507_-	Arc family DNA-binding protein	G9L6D6	Escherichia_phage	5.8e-32	59.8
AYX14036.1\|290629_290797_+	Arc family DNA binding domain-containing protein	G9L6D7	Escherichia_phage	5.8e-12	60.0
AYX14037.1\|291669_292374_+	transcriptional regulator	A0A0P0ZDC0	Stx2-converting_phage	1.7e-36	36.4
AYX14038.1\|292471_293023_+	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	9.5e-27	58.0
AYX14039.1\|293030_293381_+	hypothetical protein	K7PLP0	Enterobacteria_phage	9.3e-12	33.6
AYX14040.1\|293436_294057_+\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	2.1e-54	56.5
AYX14041.1\|294231_294453_-	hypothetical protein	NA	NA	NA	NA
AYX14042.1\|294455_294635_-	hypothetical protein	NA	NA	NA	NA
AYX14043.1\|294628_297832_+	host specificity protein J	F1C571	Cronobacter_phage	0.0e+00	60.4
AYX14044.1\|297831_298830_+	hypothetical protein	NA	NA	NA	NA
AYX14045.1\|299754_300216_+\|tail	phage tail protein	B6SCW7	Bacteriophage	4.1e-07	39.5
AYX14046.1\|300451_302380_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.1e-127	37.1

DBSCAN-SWA_2

842422 : 898831

Salmonella_phage(38.89%)

holin,lysis,tail,head,plate,transposase,integrase,portal,capsid

attL 837615:837630|attR 894505:894520

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
837615:837630	attL	NA	NA	NA	NA
AYX14486.1\|842422_842527_-\|transposase	IS3 family transposase	NA	NA	NA	NA
AYX14487.1\|843204_843639_+	hypothetical protein	NA	NA	NA	NA
AYX14488.1\|843650_844220_+	hypothetical protein	NA	NA	NA	NA
AYX14489.1\|845883_846960_-	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
AYX14490.1\|847025_847316_-	antitoxin	K4NZP3	Burkholderia_phage	1.8e-05	39.4
AYX14491.1\|847296_847569_-	BrnT family toxin	NA	NA	NA	NA
AYX14492.1\|847599_847959_+\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	2.6e-17	61.1
AYX14493.1\|847955_848255_+	lysozyme	A0A218M4K8	Erwinia_phage	2.6e-23	64.9
AYX14494.1\|848271_848559_+	hypothetical protein	NA	NA	NA	NA
AYX14495.1\|848993_849209_+	hypothetical protein	NA	NA	NA	NA
AYX14496.1\|849157_849511_+	DUF2778 domain-containing protein	NA	NA	NA	NA
AYX17749.1\|849515_849770_+	hypothetical protein	NA	NA	NA	NA
AYX14497.1\|852287_852845_-	N-acetyltransferase	NA	NA	NA	NA
AYX14498.1\|852819_853986_-	diaminopimelate decarboxylase	NA	NA	NA	NA
AYX14499.1\|853982_854795_-	methyltransferase domain-containing protein	NA	NA	NA	NA
AYX14500.1\|854779_855634_-	hypothetical protein	NA	NA	NA	NA
AYX14501.1\|855621_856347_-	methyltransferase domain-containing protein	NA	NA	NA	NA
AYX14502.1\|856336_858070_-	methyltransferase domain-containing protein	NA	NA	NA	NA
AYX14503.1\|858066_859335_-	MFS transporter	NA	NA	NA	NA
AYX14504.1\|860291_861804_+\|transposase	IS3 family transposase	NA	NA	NA	NA
AYX14505.1\|862024_862369_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AYX14506.1\|862394_862583_+	hypothetical protein	NA	NA	NA	NA
AYX14507.1\|862612_862795_-	hypothetical protein	NA	NA	NA	NA
AYX14508.1\|862986_863160_-	hypothetical protein	NA	NA	NA	NA
AYX14509.1\|863403_863550_-	hypothetical protein	NA	NA	NA	NA
AYX14510.1\|863919_864147_-	DNA helicase	A0A192Y673	Salmonella_phage	2.1e-12	57.7
AYX14511.1\|864257_864773_+\|integrase	integrase	H9C152	Pectobacterium_phage	1.6e-60	67.5
AYX14512.1\|864705_864930_+\|integrase	integrase	K7PLZ2	Enterobacterial_phage	6.6e-19	76.8
AYX14513.1\|866243_866624_-	hypothetical protein	NA	NA	NA	NA
AYX14514.1\|867132_868830_-	DUF4041 domain-containing protein	A0A142LP25	Marinitoga_camini_virus	9.0e-76	62.5
AYX14515.1\|868850_869219_-	XRE family transcriptional regulator	A0A2H4JFL3	uncultured_Caudovirales_phage	5.2e-13	39.8
AYX14516.1\|869279_869471_+	hypothetical protein	NA	NA	NA	NA
AYX14517.1\|869483_869687_+	DNA-binding protein	NA	NA	NA	NA
AYX14518.1\|869698_869905_+	hypothetical protein	NA	NA	NA	NA
AYX14519.1\|869901_870216_+	hypothetical protein	NA	NA	NA	NA
AYX14520.1\|870357_870618_+	hypothetical protein	NA	NA	NA	NA
AYX14521.1\|870648_870954_+	hypothetical protein	NA	NA	NA	NA
AYX14522.1\|871036_871804_+	hypothetical protein	K7ZRM8	Xanthomonas_citri_phage	1.9e-09	49.3
AYX14523.1\|871860_872514_+	3'-5' exonuclease	A0A1D9C9N8	Salinivibrio_phage	3.0e-56	62.9
AYX14524.1\|872510_873329_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S6L011	Salmonella_phage	1.5e-76	55.9
AYX14525.1\|873417_875973_+	replication endonuclease	E5G6L9	Salmonella_phage	8.9e-128	37.9
AYX14526.1\|875953_876184_+	hypothetical protein	NA	NA	NA	NA
AYX14527.1\|876180_876525_+	hypothetical protein	NA	NA	NA	NA
AYX14528.1\|877206_878247_-\|portal	phage portal protein	A0A077K9Q8	Ralstonia_phage	7.8e-131	64.3
AYX14529.1\|878246_880010_-	oxidoreductase	A0A1S6KZW3	Salmonella_phage	3.1e-228	63.6
AYX14530.1\|880180_880996_+\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	9.6e-76	71.1
AYX14531.1\|881032_882088_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.1e-123	62.8
AYX14532.1\|882094_882748_+	hypothetical protein	F1BUQ7	Erwinia_phage	1.7e-43	46.8
AYX14533.1\|882981_883473_+\|head	head completion/stabilization protein	A0A1S5NNA6	Burkholderia_phage	7.9e-33	48.4
AYX14534.1\|883472_883676_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.8e-23	70.1
AYX14535.1\|883705_884092_+\|holin	holin	NA	NA	NA	NA
AYX14536.1\|884078_884474_+	M15 family peptidase	A9DET4	Yersinia_phage	3.5e-47	71.8
AYX14537.1\|884478_884904_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	9.2e-22	48.2
AYX14538.1\|884791_885016_+	hypothetical protein	NA	NA	NA	NA
AYX14539.1\|885002_885470_+\|tail	phage tail protein	F1BUP9	Erwinia_phage	1.8e-42	57.2
AYX14540.1\|885466_885913_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	7.7e-35	50.7
AYX14541.1\|885931_886183_-	hypothetical protein	NA	NA	NA	NA
AYX14542.1\|886244_886940_+	hypothetical protein	NA	NA	NA	NA
AYX14543.1\|887207_887906_+\|plate	phage baseplate assembly protein V	O80314	Escherichia_phage	6.5e-65	62.0
AYX14544.1\|887902_888256_+\|plate	baseplate assembly protein	A0A218M4K8	Erwinia_phage	2.4e-31	59.3
AYX14545.1\|888258_889167_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	1.3e-118	73.2
AYX14546.1\|889159_889768_+\|tail	phage tail protein I	F1BUP2	Erwinia_phage	1.7e-85	75.0
AYX14547.1\|889764_891204_+	hypothetical protein	F1BUP1	Erwinia_phage	3.8e-75	77.8
AYX14548.1\|891215_891695_+\|tail	phage tail protein	F1BUP0	Erwinia_phage	1.2e-28	41.9
AYX14549.1\|891828_893004_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.3e-179	79.8
AYX14550.1\|893015_893531_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	2.5e-61	66.3
AYX14551.1\|893584_893932_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.6e-18	51.6
AYX17750.1\|893946_894066_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
AYX14552.1\|894058_896974_+\|tail	phage tail tape measure protein	Q9ZXK0	Pseudomonas_virus	2.6e-155	52.8
894505:894520	attR	NA	NA	NA	NA
AYX14553.1\|896985_897450_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.2e-43	56.2
AYX14554.1\|897446_898541_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.9e-127	65.7
AYX14555.1\|898615_898831_+	late control protein B	S4TNZ3	Salmonella_phage	1.1e-18	60.6

DBSCAN-SWA_3

1191402 : 1258084

uncultured_Caudovirales_phage(25.0%)

protease,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYX14792.1\|1191402_1191855_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AYX14793.1\|1191854_1192436_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AYX14794.1\|1192410_1193496_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AYX14795.1\|1193459_1195223_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AYX14796.1\|1195443_1195914_-	hypothetical protein	NA	NA	NA	NA
AYX14797.1\|1195913_1196999_-	hypothetical protein	NA	NA	NA	NA
AYX14798.1\|1196989_1198591_-	type VI secretion system protein TssA	NA	NA	NA	NA
AYX14799.1\|1198634_1202057_-	type VI secretion protein VasK	NA	NA	NA	NA
AYX17762.1\|1202053_1203175_-	hypothetical protein	NA	NA	NA	NA
AYX14800.1\|1204065_1204578_-	hypothetical protein	NA	NA	NA	NA
AYX14801.1\|1204582_1206331_-	TIGR02594 family protein	A0A1U9ZAE8	Proteus_phage	9.8e-09	29.0
AYX14802.1\|1206339_1206756_-	DUF4431 domain-containing protein	NA	NA	NA	NA
AYX14803.1\|1206758_1209488_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	5.2e-17	32.5
AYX14804.1\|1209803_1210199_-	hypothetical protein	NA	NA	NA	NA
AYX14805.1\|1210202_1211474_-	hypothetical protein	NA	NA	NA	NA
AYX14806.1\|1211591_1214090_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.8e-17	32.5
AYX14807.1\|1214086_1216735_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.9e-93	31.2
AYX14808.1\|1216935_1217115_+	hypothetical protein	NA	NA	NA	NA
AYX14809.1\|1217122_1217614_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
AYX14810.1\|1217617_1219363_-	OmpA family protein	NA	NA	NA	NA
AYX14811.1\|1219362_1220049_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
AYX14812.1\|1220045_1221398_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AYX14813.1\|1221409_1222960_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AYX14814.1\|1223002_1223503_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AYX14815.1\|1224167_1224410_-	hypothetical protein	NA	NA	NA	NA
AYX14816.1\|1224465_1225314_-	ACP S-malonyltransferase	NA	NA	NA	NA
AYX14817.1\|1225412_1225661_-	acyl carrier protein	NA	NA	NA	NA
AYX14818.1\|1225698_1226139_-	lipocalin-like domain-containing protein	NA	NA	NA	NA
AYX14819.1\|1226225_1227014_-	SDR family oxidoreductase	NA	NA	NA	NA
AYX14820.1\|1227016_1227778_-	enoyl-CoA hydratase	NA	NA	NA	NA
AYX14821.1\|1227770_1228490_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
AYX14822.1\|1228482_1229721_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA
AYX14823.1\|1229736_1230483_-	SDR family oxidoreductase	NA	NA	NA	NA
AYX14824.1\|1230475_1231759_-	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA
AYX17763.1\|1231748_1232207_-	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
AYX14825.1\|1232536_1232857_-	hypothetical protein	NA	NA	NA	NA
AYX14826.1\|1233485_1234232_+	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	3.3e-14	31.4
AYX14827.1\|1234385_1236803_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AYX14828.1\|1240126_1240456_+	sulfurtransferase TusE	NA	NA	NA	NA
AYX14829.1\|1240507_1240786_-	acylphosphatase	NA	NA	NA	NA
AYX14830.1\|1240879_1242070_+	ribosomal RNA large subunit methyltransferase I	W6LLI2	Streptococcus_phage	2.1e-26	28.1
AYX14831.1\|1242130_1242448_+	heat shock protein HspQ	NA	NA	NA	NA
AYX14832.1\|1242556_1242973_-	CoA-binding protein	NA	NA	NA	NA
AYX14833.1\|1243288_1243969_+	DUF2057 family protein	NA	NA	NA	NA
AYX14834.1\|1244147_1244612_+	methylglyoxal synthase	NA	NA	NA	NA
AYX14835.1\|1244672_1246727_-	DNA helicase IV	A7KV33	Bacillus_phage	5.7e-16	25.8
AYX14836.1\|1246920_1247367_+	YccF domain-containing protein	NA	NA	NA	NA
AYX14837.1\|1247396_1249535_+	TIGR01666 family membrane protein	NA	NA	NA	NA
AYX14838.1\|1249636_1250272_-	TfoX family DNA transformation protein	NA	NA	NA	NA
AYX14839.1\|1250500_1251007_+	cell division inhibitor SulA	NA	NA	NA	NA
AYX14840.1\|1251364_1252426_+	porin OmpA	NA	NA	NA	NA
AYX14841.1\|1252531_1252987_-	macrodomain Ter protein MatP	NA	NA	NA	NA
AYX14842.1\|1253176_1254949_+\|protease	Lon protease family protein	NA	NA	NA	NA
AYX14843.1\|1255017_1255536_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
AYX14844.1\|1255801_1255990_-	hypothetical protein	NA	NA	NA	NA
AYX14845.1\|1256235_1257510_+	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA
AYX14846.1\|1257625_1258084_-\|transposase	IS200/IS605-like element IS1541B family transposase	I4AZI8	Saccharomonospora_phage	2.1e-11	30.7

DBSCAN-SWA_4

1462513 : 1470831

Shigella_phage(33.33%)

coat,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYX15007.1\|1462513_1463293_-\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	7.1e-52	52.4
AYX15008.1\|1463389_1463992_-	DUF2313 domain-containing protein	A0A2P9JZK7	Alteromonadaceae_phage	2.0e-33	38.6
AYX15009.1\|1463988_1465125_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	6.5e-30	30.3
AYX15010.1\|1465128_1465584_-	hypothetical protein	A0A0C4UR04	Shigella_phage	4.3e-17	43.8
AYX15011.1\|1465580_1466177_-\|plate	baseplate assembly protein	NA	NA	NA	NA
AYX15012.1\|1466192_1467248_-\|tail	phage tail protein	M1PVV2	Vibrio_phage	7.9e-38	27.2
AYX15013.1\|1467244_1468651_-	hypothetical protein	Q8SBG8	Shigella_phage	2.1e-17	33.7
AYX15014.1\|1468917_1470411_-\|coat	coat protein	NA	NA	NA	NA
AYX15015.1\|1470531_1470831_-\|tail	phage tail assembly protein	NA	NA	NA	NA

DBSCAN-SWA_5

1911134 : 1989196

Salmonella_phage(23.91%)

holin,lysis,tail,protease,coat,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYX15390.1\|1911134_1911440_+\|holin	holin	A0A286N2Q5	Klebsiella_phage	2.0e-10	46.2
AYX15391.1\|1911636_1913241_+	chitin-binding protein	Q9J8B0	Spodoptera_exigua_multiple_nucleopolyhedrovirus	2.3e-20	31.0
AYX15392.1\|1913700_1914612_-	LysR family transcriptional regulator	NA	NA	NA	NA
AYX15393.1\|1916486_1917947_+	beta-Ala-His dipeptidase	NA	NA	NA	NA
AYX15394.1\|1918060_1919119_-	DNA polymerase IV	NA	NA	NA	NA
AYX15395.1\|1919474_1920422_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
AYX15396.1\|1920666_1920894_-	(Na+)-NQR maturation NqrM	NA	NA	NA	NA
AYX17786.1\|1920906_1921929_-	FAD:protein FMN transferase	NA	NA	NA	NA
AYX15397.1\|1921969_1923193_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit F	NA	NA	NA	NA
AYX15398.1\|1923208_1923805_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit E	NA	NA	NA	NA
AYX15399.1\|1923811_1924441_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit D	NA	NA	NA	NA
AYX15400.1\|1924433_1925234_-	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA
AYX15401.1\|1925223_1926465_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit B	NA	NA	NA	NA
AYX15402.1\|1926468_1927812_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit A	NA	NA	NA	NA
AYX15403.1\|1927913_1928093_+	hypothetical protein	NA	NA	NA	NA
AYX15404.1\|1928307_1929048_+	transpeptidase	NA	NA	NA	NA
AYX15405.1\|1929012_1929786_-	class II glutamine amidotransferase	NA	NA	NA	NA
AYX15406.1\|1929988_1930570_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	3.7e-13	30.8
AYX15407.1\|1930809_1933257_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
AYX15408.1\|1933428_1934175_-	transcriptional regulator	NA	NA	NA	NA
AYX15409.1\|1934176_1936030_-	glycosyltransferase	NA	NA	NA	NA
AYX15410.1\|1936184_1942355_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
AYX15411.1\|1942395_1944186_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
AYX15412.1\|1944888_1944990_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
AYX15413.1\|1945388_1946612_-	methylthioribose kinase	NA	NA	NA	NA
AYX15414.1\|1946807_1947848_+	S-methyl-5-thioribose-1-phosphate isomerase	NA	NA	NA	NA
AYX15415.1\|1947880_1948423_-	acireductone dioxygenase	NA	NA	NA	NA
AYX15416.1\|1948521_1949211_-	acireductone synthase	NA	NA	NA	NA
AYX15417.1\|1949207_1949876_-	methylthioribulose 1-phosphate dehydratase	NA	NA	NA	NA
AYX15418.1\|1952151_1952403_+	Arc family DNA-binding protein	E7C9U8	Salmonella_phage	2.3e-20	64.6
AYX15419.1\|1952386_1953067_+	hypothetical protein	NA	NA	NA	NA
AYX15420.1\|1953085_1954951_-	DNA transfer protein	E7C9U6	Salmonella_phage	6.6e-197	62.0
AYX15421.1\|1954950_1956387_-	DNA transfer protein	A0A2H4FND5	Salmonella_phage	1.8e-85	43.8
AYX15422.1\|1956386_1957037_-	DNA transfer protein	A0A2H4FUQ9	Salmonella_phage	1.2e-39	48.2
AYX15423.1\|1957030_1957492_-	DUF2824 family protein	Q2A0B3	Sodalis_phage	2.7e-59	70.5
AYX15424.1\|1957507_1958209_-\|tail	phage tail protein	C6ZR14	Salmonella_phage	2.3e-38	59.4
AYX15425.1\|1958208_1959624_-	hypothetical protein	Q9AYZ4	Salmonella_phage	1.7e-205	72.5
AYX15426.1\|1959595_1960093_-	recombinase RmuC	G8EYJ2	Enterobacteria_phage	2.3e-40	57.1
AYX15427.1\|1960076_1960307_-	hypothetical protein	A0A2D1GLK1	Escherichia_phage	4.4e-18	77.6
AYX15428.1\|1960347_1961631_-\|coat	coat protein	A0A2D1GLV2	Escherichia_phage	3.6e-170	68.5
AYX15429.1\|1961630_1962539_-	scaffolding protein	A0A0M3ULI9	Salmonella_phage	3.5e-119	75.2
AYX15430.1\|1962552_1964718_-\|portal	portal protein	A0A2D1GLJ6	Escherichia_phage	2.2e-289	69.1
AYX15431.1\|1964717_1966178_-	DNA packaging protein	Q2A0C1	Sodalis_phage	3.8e-192	66.5
AYX15432.1\|1966137_1966638_-	DNA-packaging protein	C6ZR06	Salmonella_phage	8.5e-59	72.3
AYX15433.1\|1966641_1967007_-	hypothetical protein	E7C9U7	Salmonella_phage	8.2e-11	36.9
AYX15434.1\|1967031_1967499_-\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	1.9e-23	45.0
AYX15435.1\|1967483_1967966_-	lysozyme	A0A2H4JCH1	uncultured_Caudovirales_phage	5.7e-60	67.3
AYX17787.1\|1967946_1968144_-\|holin	holin	B6SD15	Bacteriophage	3.2e-17	61.0
AYX15436.1\|1968376_1968706_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AYX15437.1\|1968680_1968911_-	hypothetical protein	NA	NA	NA	NA
AYX15438.1\|1969282_1969771_-	DUF1133 family protein	A0A1R3Y5U9	Salmonella_virus	4.1e-66	75.2
AYX15439.1\|1969767_1969959_-	protein ninH	A5VW84	Enterobacteria_phage	9.5e-11	62.9
AYX15440.1\|1969955_1970549_-	recombination protein NinG	A0A2R2Z332	Escherichia_phage	1.2e-38	44.1
AYX15441.1\|1970523_1970892_-	hypothetical protein	NA	NA	NA	NA
AYX15442.1\|1970863_1971205_-	hypothetical protein	K7P7P8	Enterobacteria_phage	6.1e-16	45.7
AYX15443.1\|1971318_1971720_-	DUF2591 domain-containing protein	A0A2I7R3U5	Vibrio_phage	9.4e-08	33.0
AYX15444.1\|1971899_1972343_-	hypothetical protein	K7P7B8	Enterobacteria_phage	1.9e-46	62.3
AYX15445.1\|1972502_1973120_-	DUF551 domain-containing protein	NA	NA	NA	NA
AYX15446.1\|1973116_1973302_-	hypothetical protein	R9TNE4	Aeromonas_phage	2.2e-12	56.7
AYX15447.1\|1973298_1973670_-	hypothetical protein	NA	NA	NA	NA
AYX15448.1\|1973666_1974356_-	DNA replication protein	A0A077KCC8	Edwardsiella_phage	1.6e-63	56.2
AYX17788.1\|1974352_1975285_-	replication protein	A0A1I9LJP3	Stx_converting_phage	1.8e-54	68.8
AYX15449.1\|1975338_1976079_-	hypothetical protein	NA	NA	NA	NA
AYX15450.1\|1976103_1976397_-	hypothetical protein	A2SY75	Escherichia_phage	6.1e-25	63.9
AYX15451.1\|1976506_1976734_-	XRE family transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.3e-11	53.3
AYX15452.1\|1976832_1977510_+	helix-turn-helix transcriptional regulator	F1C5C2	Cronobacter_phage	5.5e-61	55.2
AYX15453.1\|1977608_1978619_+	hypothetical protein	NA	NA	NA	NA
AYX15454.1\|1978662_1978869_-	hypothetical protein	A0A2H5BFH9	Salmonella_phage	1.1e-12	58.2
AYX15455.1\|1979243_1979468_+	hypothetical protein	NA	NA	NA	NA
AYX15456.1\|1979530_1979878_+	hypothetical protein	A0A0K2FII1	Escherichia_phage	4.0e-07	35.8
AYX15457.1\|1979991_1980231_+	hypothetical protein	A0A2H4JA69	uncultured_Caudovirales_phage	1.2e-15	63.9
AYX15458.1\|1980234_1980435_+	hypothetical protein	NA	NA	NA	NA
AYX15459.1\|1980512_1981541_+	hypothetical protein	K7P6J9	Enterobacteria_phage	1.4e-31	65.3
AYX15460.1\|1981559_1981691_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	6.3e-06	59.5
AYX15461.1\|1981815_1982109_+	hypothetical protein	NA	NA	NA	NA
AYX15462.1\|1982108_1982927_+	exodeoxyribonuclease VIII	E5AGE0	Erwinia_phage	1.1e-119	73.3
AYX15463.1\|1982919_1983855_+	recombinase RecT	A0A193GYL3	Enterobacter_phage	1.9e-107	62.5
AYX15464.1\|1983851_1984034_+	DUF1317 family protein	A0A1U8QQC1	Enterobacteria_phage	1.3e-09	59.6
AYX15465.1\|1984077_1984503_+	hypothetical protein	NA	NA	NA	NA
AYX15466.1\|1984504_1984741_+	hypothetical protein	NA	NA	NA	NA
AYX15467.1\|1984737_1985442_+	hypothetical protein	A0A077SLK5	Escherichia_phage	3.2e-11	54.9
AYX15468.1\|1985441_1985690_+	hypothetical protein	NA	NA	NA	NA
AYX15469.1\|1985693_1985906_+	hypothetical protein	A0A0U4JX53	Pseudomonas_phage	2.6e-09	50.7
AYX15470.1\|1985895_1986162_+	hypothetical protein	NA	NA	NA	NA
AYX15471.1\|1986568_1986772_+	hypothetical protein	NA	NA	NA	NA
AYX15472.1\|1986768_1987311_+	phage N-6-adenine-methyltransferase	G9L688	Escherichia_phage	6.4e-60	67.1
AYX15473.1\|1987640_1987892_+	DNA-binding protein	A0A286S2A4	Klebsiella_phage	5.8e-16	50.0
AYX15474.1\|1987924_1989196_+	DUF3596 domain-containing protein	Q8W658	Enterobacteria_phage	1.7e-127	53.4

DBSCAN-SWA_6

3714809 : 3750187

Cronobacter_phage(74.19%)

holin,tail,head,integrase,portal,terminase,capsid,tRNA

attL 3715655:3715703|attR 3744391:3744439

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYX16868.1\|3714809_3715412_+\|terminase	terminase small subunit	A0A2R3UAN5	Myoviridae_environmental_samples	1.8e-39	49.2
3715655:3715703	attL	NA	NA	NA	NA
AYX16869.1\|3715747_3716845_-\|integrase	integrase	A0A218M4I3	Erwinia_phage	5.9e-129	65.5
AYX16870.1\|3716876_3717782_-	hypothetical protein	NA	NA	NA	NA
AYX16871.1\|3717791_3718370_-	phage repressor protein	F1BUN8	Cronobacter_phage	2.1e-29	32.8
AYX16872.1\|3718484_3718706_+	regulator	NA	NA	NA	NA
AYX16873.1\|3718737_3719247_+	hypothetical protein	A0A1S6L008	Salmonella_phage	2.4e-40	51.8
AYX16874.1\|3719254_3719458_+	DUF2724 domain-containing protein	NA	NA	NA	NA
AYX16875.1\|3719460_3719835_+	hypothetical protein	NA	NA	NA	NA
AYX16876.1\|3719844_3720252_+	hypothetical protein	NA	NA	NA	NA
AYX16877.1\|3720330_3720570_+	DUF2732 family protein	NA	NA	NA	NA
AYX16878.1\|3720566_3722654_+	replication endonuclease	F1BUM9	Cronobacter_phage	8.1e-228	61.0
AYX16879.1\|3722760_3722973_+	hypothetical protein	NA	NA	NA	NA
AYX16880.1\|3722949_3723216_-	transcriptional regulator	F1BUM8	Cronobacter_phage	3.6e-32	68.2
AYX17890.1\|3723266_3724238_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	1.9e-139	69.5
AYX16881.1\|3724285_3726073_-\|terminase	terminase	F1BUM5	Cronobacter_phage	1.5e-235	66.4
AYX16882.1\|3726239_3727094_+\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	1.6e-65	48.4
AYX16883.1\|3727148_3728180_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	6.1e-144	75.8
AYX16884.1\|3728190_3728889_+\|terminase	terminase	F1BUM0	Cronobacter_phage	2.5e-64	52.6
AYX16885.1\|3728984_3729437_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	5.2e-39	56.7
AYX16886.1\|3729433_3729922_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	3.9e-32	42.4
AYX16887.1\|3729921_3730596_+	hypothetical protein	F1BUL6	Cronobacter_phage	2.2e-81	68.2
AYX16888.1\|3730622_3731762_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	4.0e-136	65.7
AYX16889.1\|3731758_3732211_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	2.4e-44	59.5
AYX16890.1\|3732220_3732511_+\|holin	holin	Q6K1I2	Salmonella_virus	2.2e-14	52.8
AYX16891.1\|3732507_3732849_+	M15 family peptidase	F1BUL3	Cronobacter_phage	1.5e-43	82.2
AYX16892.1\|3732848_3733190_+	hypothetical protein	F1BUL2	Cronobacter_phage	6.3e-13	40.9
AYX16893.1\|3733146_3733338_+	hypothetical protein	F1BUL1	Cronobacter_phage	5.1e-12	63.2
AYX16894.1\|3733339_3733606_+	hypothetical protein	A5X9I7	Aeromonas_virus	1.0e-18	54.9
AYX16895.1\|3733793_3735770_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	2.7e-172	48.4
AYX16896.1\|3735769_3736102_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	1.5e-35	68.3
AYX16897.1\|3736094_3737279_+	hypothetical protein	F1BUK6	Cronobacter_phage	2.3e-150	65.7
AYX16898.1\|3737271_3737907_+	hypothetical protein	F1BUK5	Cronobacter_phage	5.9e-57	56.9
AYX17891.1\|3739592_3740000_+\|tail	tail assembly chaperone	NA	NA	NA	NA
AYX16899.1\|3739989_3740721_+	hypothetical protein	F1BUK1	Cronobacter_phage	9.9e-40	39.6
AYX16900.1\|3740686_3741235_+	hypothetical protein	F1BUJ9	Cronobacter_phage	6.3e-55	63.7
AYX16901.1\|3741231_3742887_+	hypothetical protein	F1BUJ7	Cronobacter_phage	1.1e-166	52.8
AYX16902.1\|3742854_3743064_-	hypothetical protein	NA	NA	NA	NA
AYX16903.1\|3743062_3743269_+	hypothetical protein	NA	NA	NA	NA
AYX16904.1\|3743393_3744224_-	ATP-dependent RNA helicase HrpA	NA	NA	NA	NA
AYX16905.1\|3744665_3746504_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
3744391:3744439	attR	NA	NA	NA	NA
AYX16906.1\|3746661_3748410_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	8.7e-74	38.2
AYX16907.1\|3748545_3748761_-	30S ribosomal protein S21	NA	NA	NA	NA
AYX16908.1\|3749173_3750187_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	6.5e-106	57.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage