CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027787	Tetragenococcus koreensis strain KCTC 3924 plasmid pTK, complete sequence	0 crisprs	NA	0	0	0	0
CP027786	Tetragenococcus koreensis strain KCTC 3924 chromosome, complete genome	0 crisprs	DinG,DEDDh,cas3,cas14j,csa3,RT,WYL,cas5,cas8c,cas7,cas4,cas1,cas2	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

25023 : 33481

Streptococcus_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW44476.1\|25023_26424_-	6-phospho-beta-glucosidase	A0A0B5JD41	Pandoravirus	8.6e-40	28.5
AYW44477.1\|26629_28366_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	1.4e-52	36.5
AYW44478.1\|28387_28699_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
AYW44479.1\|28759_29356_+	recombination protein RecR	NA	NA	NA	NA
AYW44480.1\|29389_30043_+	dTMP kinase	M1PSC7	Streptococcus_phage	7.7e-52	52.7
AYW44481.1\|30039_30369_+	hypothetical protein	NA	NA	NA	NA
AYW44482.1\|30414_31347_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	4.4e-32	32.3
AYW46787.1\|31372_32203_+	signal peptidase	NA	NA	NA	NA
AYW44483.1\|32189_32543_+	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	4.8e-16	39.3
AYW44484.1\|32608_33481_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	9.6e-82	55.6

DBSCAN-SWA_2

1427235 : 1436720

Lactobacillus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW45683.1\|1427235_1429005_-	ABC transporter	W8CYL7	Bacillus_phage	6.3e-48	27.3
AYW45684.1\|1429001_1430717_-	ABC transporter ATP-binding protein	F2Y165	Organic_Lake_phycodnavirus	2.0e-14	24.2
AYW45685.1\|1430981_1432451_-	peptide ABC transporter permease	A0A0P0IY73	Acinetobacter_phage	2.6e-79	37.1
AYW45686.1\|1432814_1433519_+	deoxynucleoside kinase	A0A1I9KK98	Lactobacillus_phage	6.6e-41	39.1
AYW45687.1\|1433843_1434452_+	NADPH-dependent FMN reductase	A0A2P0ZL77	Lactobacillus_phage	4.1e-55	52.3
AYW45688.1\|1434472_1435771_+	NADPH-dependent FMN reductase	A0A2P0ZL82	Lactobacillus_phage	2.4e-65	64.0
AYW45689.1\|1435859_1436720_-	hypothetical protein	A0A141HSE6	Bacillus_phage	1.3e-11	28.0

DBSCAN-SWA_3

1860801 : 1921161

Streptococcus_phage(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW46036.1\|1860801_1862064_+\|transposase	DDE transposase	NA	NA	NA	NA
AYW46037.1\|1862495_1863758_+\|transposase	DDE transposase	NA	NA	NA	NA
AYW46038.1\|1864023_1864512_+	ArgR family transcriptional regulator	NA	NA	NA	NA
AYW46039.1\|1865039_1866752_-	PTS lactose transporter subunit IIBC	NA	NA	NA	NA
AYW46040.1\|1866841_1868272_-	6-phospho-beta-galactosidase	NA	NA	NA	NA
AYW46041.1\|1868274_1868625_-	PTS lactose transporter subunit IIA	NA	NA	NA	NA
AYW46042.1\|1868692_1869652_-	tagatose-bisphosphate aldolase	NA	NA	NA	NA
AYW46043.1\|1869667_1870600_-	tagatose-6-phosphate kinase	NA	NA	NA	NA
AYW46044.1\|1870620_1871283_-	HAD family phosphatase	NA	NA	NA	NA
AYW46045.1\|1871282_1871798_-	galactose-6-phosphate isomerase subunit LacB	NA	NA	NA	NA
AYW46046.1\|1871823_1872252_-	galactose-6-phosphate isomerase subunit LacA	NA	NA	NA	NA
AYW46047.1\|1872442_1872946_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
AYW46048.1\|1872938_1873244_+	PTS fructose transporter subunit IIB	NA	NA	NA	NA
AYW46049.1\|1873264_1874674_+	PTS glucitol transporter subunit IIA	NA	NA	NA	NA
AYW46050.1\|1874763_1875516_-	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	4.9e-18	30.7
AYW46051.1\|1875675_1876152_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AYW46052.1\|1876358_1876934_-	hypothetical protein	NA	NA	NA	NA
AYW46053.1\|1877068_1877596_+	hypothetical protein	NA	NA	NA	NA
AYW46054.1\|1877953_1878382_+	hypothetical protein	NA	NA	NA	NA
AYW46055.1\|1878568_1879306_-	alpha/beta hydrolase	NA	NA	NA	NA
AYW46056.1\|1879552_1879945_-	30S ribosomal protein S9	NA	NA	NA	NA
AYW46057.1\|1879960_1880404_-	50S ribosomal protein L13	NA	NA	NA	NA
AYW46058.1\|1880727_1882038_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	2.1e-64	36.2
AYW46059.1\|1882517_1883393_-	fructokinase	NA	NA	NA	NA
AYW46060.1\|1883480_1884422_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AYW46061.1\|1884536_1885607_-	BMP family ABC transporter substrate-binding protein	A0A0A7DN02	Lactobacillus_phage	2.3e-61	39.3
AYW46062.1\|1885944_1886439_-	hypothetical protein	NA	NA	NA	NA
AYW46063.1\|1886448_1887327_-	hypothetical protein	NA	NA	NA	NA
AYW46064.1\|1887401_1888355_-	hypothetical protein	NA	NA	NA	NA
AYW46065.1\|1888494_1889229_-	esterase	NA	NA	NA	NA
AYW46066.1\|1889313_1889955_-	V-type ATP synthase subunit D	NA	NA	NA	NA
AYW46067.1\|1889945_1891343_-	V-type ATP synthase subunit B	NA	NA	NA	NA
AYW46068.1\|1891342_1893127_-	V-type ATP synthase subunit A	NA	NA	NA	NA
AYW46069.1\|1893160_1893475_-	V-type ATP synthase subunit F	NA	NA	NA	NA
AYW46070.1\|1893467_1894469_-	V-type ATP synthase subunit C	NA	NA	NA	NA
AYW46071.1\|1894480_1895077_-	ATPase	NA	NA	NA	NA
AYW46072.1\|1895087_1895561_-	V-type ATP synthase subunit K	NA	NA	NA	NA
AYW46073.1\|1895564_1897538_-	V-type ATP synthase subunit I	NA	NA	NA	NA
AYW46074.1\|1897527_1897851_-	hypothetical protein	NA	NA	NA	NA
AYW46075.1\|1897930_1898347_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
AYW46076.1\|1898562_1899267_-	magnesium transporter MgtC	G3MA03	Bacillus_virus	3.5e-18	43.7
AYW46077.1\|1899350_1899647_-	hypothetical protein	NA	NA	NA	NA
AYW46078.1\|1901359_1903318_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.8e-96	34.7
AYW46079.1\|1904191_1904854_-	nucleoside-diphosphate sugar epimerase	NA	NA	NA	NA
AYW46080.1\|1904929_1905382_-	hypothetical protein	NA	NA	NA	NA
AYW46081.1\|1905545_1906160_+	XRE family transcriptional regulator	Q9AZW3	Lactococcus_phage	1.3e-19	42.9
AYW46082.1\|1906347_1907037_-	hypothetical protein	M4QRR4	Synechococcus_phage	3.0e-22	32.1
AYW46083.1\|1907055_1907874_-	PTS mannose transporter subunit IID	NA	NA	NA	NA
AYW46084.1\|1907863_1908634_-	PTS sugar transporter	NA	NA	NA	NA
AYW46085.1\|1908662_1909133_-	PTS mannose/fructose/sorbose transporter subunit IIB	NA	NA	NA	NA
AYW46086.1\|1909146_1909566_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA
AYW46087.1\|1909637_1910906_-	hypothetical protein	NA	NA	NA	NA
AYW46088.1\|1911070_1912429_+\|transposase	transposase	NA	NA	NA	NA
AYW46089.1\|1912333_1913938_-	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA
AYW46090.1\|1914451_1915672_+	hypothetical protein	NA	NA	NA	NA
AYW46091.1\|1915746_1916103_-	reverse transcriptase	NA	NA	NA	NA
AYW46092.1\|1916156_1917017_-	group II intron reverse transcriptase/maturase	D4HTV9	Vibrio_phage	4.0e-16	28.0
AYW46093.1\|1917689_1919108_+\|transposase	ISLre2 family transposase	NA	NA	NA	NA
AYW46094.1\|1919317_1919938_+	DUF924 domain-containing protein	E3T4R4	Cafeteria_roenbergensis_virus	1.7e-08	35.8
AYW46095.1\|1919901_1921161_-\|transposase	DDE transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2529642 : 2579566

Bacillus_phage(33.33%)

integrase,transposase

attL 2551655:2551672|attR 2572897:2572914

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW46603.1\|2529642_2531001_+\|transposase	transposase	NA	NA	NA	NA
AYW46604.1\|2531284_2531797_+	hypothetical protein	NA	NA	NA	NA
AYW46605.1\|2532491_2533529_+	hypothetical protein	NA	NA	NA	NA
AYW46606.1\|2533612_2533843_-	hypothetical protein	NA	NA	NA	NA
AYW46607.1\|2534096_2534918_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
AYW46608.1\|2534960_2535488_+	hypothetical protein	NA	NA	NA	NA
AYW46609.1\|2535392_2536751_-\|transposase	transposase	NA	NA	NA	NA
AYW46610.1\|2537200_2537446_-	hypothetical protein	NA	NA	NA	NA
AYW46611.1\|2537633_2538503_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	3.0e-75	50.9
AYW46612.1\|2538561_2539392_-	hypothetical protein	NA	NA	NA	NA
AYW46613.1\|2539546_2541313_+	hypothetical protein	NA	NA	NA	NA
AYW46614.1\|2541333_2542104_+	hypothetical protein	NA	NA	NA	NA
AYW46615.1\|2542348_2545039_+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA
AYW46616.1\|2545129_2546116_+	hypothetical protein	NA	NA	NA	NA
AYW46617.1\|2546310_2546625_+	hypothetical protein	NA	NA	NA	NA
AYW46618.1\|2546910_2548554_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
AYW46619.1\|2548563_2549787_+	peptidase T	NA	NA	NA	NA
AYW46620.1\|2549817_2550804_-	hypothetical protein	NA	NA	NA	NA
AYW46621.1\|2550852_2551611_-	hypothetical protein	NA	NA	NA	NA
2551655:2551672	attL	NA	NA	NA	NA
AYW46622.1\|2551755_2553090_+	maltose-6'-phosphate glucosidase	NA	NA	NA	NA
AYW46623.1\|2553106_2554675_+	alpha-glucoside-specific phosphotransferase enzyme IIB component	NA	NA	NA	NA
AYW46624.1\|2554907_2555600_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
AYW46625.1\|2555809_2557600_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	4.0e-74	31.6
AYW46626.1\|2557929_2560011_+	transcription antiterminator BglG	NA	NA	NA	NA
AYW46627.1\|2560026_2560338_+	PTS ascorbate transporter subunit IIB	NA	NA	NA	NA
AYW46628.1\|2560357_2561641_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
AYW46629.1\|2561666_2562080_+	hypothetical protein	NA	NA	NA	NA
AYW46630.1\|2562092_2562971_+	ketose-bisphosphate aldolase	NA	NA	NA	NA
AYW46631.1\|2562963_2563575_+	kinase	NA	NA	NA	NA
AYW46875.1\|2563779_2564640_+	transcriptional regulator	NA	NA	NA	NA
AYW46632.1\|2564636_2565098_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
AYW46633.1\|2565116_2565398_+	PTS galactitol transporter subunit IIB	NA	NA	NA	NA
AYW46634.1\|2565400_2566747_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA
AYW46635.1\|2566748_2566964_+	hypothetical protein	NA	NA	NA	NA
AYW46636.1\|2566968_2567772_+	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA
AYW46637.1\|2568039_2568459_+	PTS fructose transporter subunit IIA	NA	NA	NA	NA
AYW46638.1\|2568455_2568926_+	PTS mannose/fructose/sorbose transporter subunit IIB	NA	NA	NA	NA
AYW46639.1\|2570543_2571095_+\|integrase	integrase	D2XR58	Bacillus_phage	6.4e-31	41.7
AYW46640.1\|2571383_2571563_+	hypothetical protein	NA	NA	NA	NA
AYW46641.1\|2571903_2572455_+	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	3.6e-18	36.8
AYW46642.1\|2572471_2573164_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
2572897:2572914	attR	NA	NA	NA	NA
AYW46643.1\|2574334_2574814_-	UTRA domain-containing protein	NA	NA	NA	NA
AYW46644.1\|2575105_2576419_+\|transposase	IS1380 family transposase	A0A1X9I6F6	Streptococcus_phage	1.3e-154	61.8
AYW46645.1\|2576877_2578039_+\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	1.6e-79	51.3
AYW46646.1\|2578303_2579566_-\|transposase	DDE transposase	NA	NA	NA	NA

DBSCAN-SWA_5

2691211 : 2720674

uncultured_Caudovirales_phage(46.15%)

integrase,portal,terminase,tail,capsid,protease,head

attL 2690485:2690498|attR 2694102:2694115

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2690485:2690498	attL	NA	NA	NA	NA
AYW46746.1\|2691211_2692390_-\|integrase	site-specific integrase	A0A1B1IMP1	Lactococcus_phage	9.1e-51	37.9
AYW46747.1\|2692492_2693287_-	hypothetical protein	O48432	Lactobacillus_phage	6.8e-26	32.2
AYW46878.1\|2693343_2694030_-	hypothetical protein	E8ZDN4	Streptococcus_phage	6.9e-43	44.5
AYW46748.1\|2694196_2694442_+	phage repressor protein	A0A1S5SA21	Streptococcus_phage	5.3e-14	56.3
2694102:2694115	attR	NA	NA	NA	NA
AYW46749.1\|2694444_2694660_+	hypothetical protein	NA	NA	NA	NA
AYW46750.1\|2694651_2694885_-	hypothetical protein	NA	NA	NA	NA
AYW46751.1\|2694945_2695176_+	hypothetical protein	NA	NA	NA	NA
AYW46752.1\|2695321_2695681_+	hypothetical protein	NA	NA	NA	NA
AYW46753.1\|2695777_2696023_+	hypothetical protein	A0A0S2MYD6	Enterococcus_phage	1.5e-13	49.3
AYW46754.1\|2696006_2696489_+	hypothetical protein	A6M981	Geobacillus_virus	2.3e-32	48.4
AYW46755.1\|2696531_2697218_+	DNA-binding protein	A0A059T7T3	Listeria_phage	1.2e-39	40.6
AYW46756.1\|2697234_2697726_+	hypothetical protein	A0A0A1ELK1	Lactobacillus_phage	4.4e-15	31.4
AYW46757.1\|2698112_2699951_+	hypothetical protein	NA	NA	NA	NA
AYW46758.1\|2699947_2701450_+	hypothetical protein	W5S5P4	Pithovirus	6.0e-23	30.2
AYW46759.1\|2701430_2701880_+	hypothetical protein	NA	NA	NA	NA
AYW46760.1\|2701892_2702135_+	hypothetical protein	NA	NA	NA	NA
AYW46761.1\|2702186_2702381_+	hypothetical protein	NA	NA	NA	NA
AYW46762.1\|2702383_2702704_+	hypothetical protein	NA	NA	NA	NA
AYW46763.1\|2702667_2703390_+	hypothetical protein	NA	NA	NA	NA
AYW46764.1\|2703391_2703583_+	hypothetical protein	NA	NA	NA	NA
AYW46765.1\|2703587_2703794_+	hypothetical protein	NA	NA	NA	NA
AYW46766.1\|2703812_2704034_+	hypothetical protein	NA	NA	NA	NA
AYW46767.1\|2704033_2704366_+	hypothetical protein	NA	NA	NA	NA
AYW46768.1\|2704362_2705349_+	DNA (cytosine-5-)-methyltransferase	Q6DMX0	Streptococcus_phage	7.3e-62	42.9
AYW46769.1\|2705398_2705812_+	autolysin	D2IZL7	Enterococcus_phage	2.7e-42	61.5
AYW46770.1\|2706454_2706805_+	endonuclease	A0A2H4JI60	uncultured_Caudovirales_phage	8.9e-47	72.6
AYW46771.1\|2706946_2707417_+\|terminase	phage terminase small subunit P27 family	A0A2H4JH87	uncultured_Caudovirales_phage	5.2e-50	60.9
AYW46772.1\|2707409_2709161_+\|terminase	terminase large subunit	A0A2H4J5G3	uncultured_Caudovirales_phage	1.9e-294	83.5
AYW46773.1\|2709174_2709366_+	hypothetical protein	A0A2H4J9T6	uncultured_Caudovirales_phage	4.0e-09	49.2
AYW46774.1\|2709365_2710592_+\|portal	phage portal protein	H9A113	Staphylococcus_phage	1.8e-195	82.8
AYW46775.1\|2710581_2711139_+\|head,protease	HK97 family phage prohead protease	A0A2H4JA78	uncultured_Caudovirales_phage	2.8e-71	68.6
AYW46776.1\|2711168_2712452_+\|capsid	phage major capsid protein	A0A0N9S8J3	Staphylococcus_phage	2.0e-144	88.9
AYW46777.1\|2712520_2712862_+	DNA-packaging protein	A0A2H4JDD1	uncultured_Caudovirales_phage	2.5e-46	79.6
AYW46778.1\|2712851_2713181_+	hypothetical protein	A0A2H4J9E0	uncultured_Caudovirales_phage	4.2e-46	78.9
AYW46779.1\|2713177_2713588_+	hypothetical protein	A0A2H4JF04	uncultured_Caudovirales_phage	1.2e-34	55.9
AYW46780.1\|2713590_2713998_+	hypothetical protein	A0A2H4J9Z2	uncultured_Caudovirales_phage	5.5e-56	77.9
AYW46781.1\|2714000_2714594_+\|tail	phage tail protein	A0A2H4JH93	uncultured_Caudovirales_phage	2.1e-80	79.6
AYW46782.1\|2714683_2715439_+	hypothetical protein	A0A1D6Z291	Staphylococcus_phage	4.3e-62	61.8
AYW46783.1\|2715514_2715874_+	hypothetical protein	A0A2H4J3M2	uncultured_Caudovirales_phage	8.0e-51	87.5
AYW46784.1\|2716087_2720674_+\|tail	phage tail tape measure protein	A0A2H4JDT7	uncultured_Caudovirales_phage	9.8e-226	55.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage