CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033343	Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN076213 chromosome, complete genome	2 crisprs	PD-DExK,WYL,csa3,cas3,DEDDh,DinG,RT	1	12	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP033343_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033343_1

955928-957177

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

20 spacers

The CRISPR arrays of CP033343_1

>merge|CP033343|1|955928-957177|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCTTCGTTATTTACGACATTAACATTAACCGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTAATGCTTTTTCGTCCGCCCATAGAAATAAGTGTTCCCCGCGCCAGCGGAGATAAACCGGTATCAAAGGTCATCAGGTGTTCGCCTTTCAGCGTGTTCCCCGCGCCAGCGGGGATAAACCAGCAGATTGGTATCTGGTACGACGACTGCCGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGACTGTTAAAATGCTTCAGGACGGTGAAGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCAGGCGCTGGACGCGCTGCACAGACAGTCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGCGGTCGAGGTGGCGAGGTTGATAGCAGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGAATATGTTGATCGGGATTCTGGCCGCACTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTTATCGCTCTGAGAGTGGCGCTCGTTACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGCTGACCATGATTGCAGTCAGGGTCGGCATGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGGAATGATGAAACGAATTAGTAAAAACAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATGGCATAGCCACCCCAGACAGTGGCTTCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGACCGATCCGGGAACAACCGGAACAACGCGGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGTAACGCTGGCGTGATAATTTTGGTCGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCAATACGACTGGACTGGATTTGATTCATTAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGAGCCTGGAGCTCTCGACTCCTGATTTTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGTAACGTCCTTTGCTGGTGTTTTTGTGTCTGTGTTCCCCGCGCCAGCGGGGATAAACCGAAACACCAACATTACGGCACGCAAGAGGTTATGTGTTCCCTGCGCCAGCGGGGATAAACCGGTTGGAGGGCGGTTCTGATGGCGAAACTTATCGTGTTCCCCGCGCCAGCGGGGATAAACCGTACCAACAATTCAGCGTTACGCCAACGGTAACGTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP033343|1|1|955928-957116|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTTCGTTATTTACGACATTAACATTAACCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTAATGCTTTTTCGTCCGCCCATAGAAATAA
GTGTTCCCCGCGCCAGCGGAGATAAACCG	GTATCAAAGGTCATCAGGTGTTCGCCTTTCAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCA	GCAGATTGGTATCTGGTACGACGACTGCCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGTTAAAATGCTTCAGGACGGTGAAGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAGGCGCTGGACGCGCTGCACAGACAGTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCGGTCGAGGTGGCGAGGTTGATAGCAGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAATATGTTGATCGGGATTCTGGCCGCACTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTATCGCTCTGAGAGTGGCGCTCGTTACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCTGACCATGATTGCAGTCAGGGTCGGCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGAATGATGAAACGAATTAGTAAAAACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATGGCATAGCCACCCCAGACAGTGGCTTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACCGATCCGGGAACAACCGGAACAACGCGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTAACGCTGGCGTGATAATTTTGGTCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATACGACTGGACTGGATTTGATTCATTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGAGCCTGGAGCTCTCGACTCCTGATTTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTAACGTCCTTTGCTGGTGTTTTTGTGTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACACCAACATTACGGCACGCAAGAGGTTAT
GTGTTCCCTGCGCCAGCGGGGATAAACCG	GTTGGAGGGCGGTTCTGATGGCGAAACTTATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP033343|1|1|955928-957177|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTTCGTTATTTACGACATTAACATTAACCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTAATGCTTTTTCGTCCGCCCATAGAAATAA
GTGTTCCCCGCGCCAGCGGAGATAAACCG	GTATCAAAGGTCATCAGGTGTTCGCCTTTCAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCA	GCAGATTGGTATCTGGTACGACGACTGCCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGTTAAAATGCTTCAGGACGGTGAAGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAGGCGCTGGACGCGCTGCACAGACAGTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCGGTCGAGGTGGCGAGGTTGATAGCAGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAATATGTTGATCGGGATTCTGGCCGCACTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTATCGCTCTGAGAGTGGCGCTCGTTACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCTGACCATGATTGCAGTCAGGGTCGGCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGAATGATGAAACGAATTAGTAAAAACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATGGCATAGCCACCCCAGACAGTGGCTTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACCGATCCGGGAACAACCGGAACAACGCGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTAACGCTGGCGTGATAATTTTGGTCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATACGACTGGACTGGATTTGATTCATTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGAGCCTGGAGCTCTCGACTCCTGATTTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTAACGTCCTTTGCTGGTGTTTTTGTGTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACACCAACATTACGGCACGCAAGAGGTTAT
GTGTTCCCTGCGCCAGCGGGGATAAACCG	GTTGGAGGGCGGTTCTGATGGCGAAACTTATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCAACAATTCAGCGTTACGCCAACGGTAAC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP033343|1|1|955928-957177|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTTCGTTATTTACGACATTAACATTAACCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTAATGCTTTTTCGTCCGCCCATAGAAATAA
GTGTTCCCCGCGCCAGCGGAGATAAACCG	GTATCAAAGGTCATCAGGTGTTCGCCTTTCAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCA	GCAGATTGGTATCTGGTACGACGACTGCCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGTTAAAATGCTTCAGGACGGTGAAGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAGGCGCTGGACGCGCTGCACAGACAGTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCGGTCGAGGTGGCGAGGTTGATAGCAGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAATATGTTGATCGGGATTCTGGCCGCACTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTATCGCTCTGAGAGTGGCGCTCGTTACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCTGACCATGATTGCAGTCAGGGTCGGCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGAATGATGAAACGAATTAGTAAAAACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATGGCATAGCCACCCCAGACAGTGGCTTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACCGATCCGGGAACAACCGGAACAACGCGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTAACGCTGGCGTGATAATTTTGGTCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATACGACTGGACTGGATTTGATTCATTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGAGCCTGGAGCTCTCGACTCCTGATTTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTAACGTCCTTTGCTGGTGTTTTTGTGTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACACCAACATTACGGCACGCAAGAGGTTAT
GTGTTCCCTGCGCCAGCGGGGATAAACCG	GTTGGAGGGCGGTTCTGATGGCGAAACTTATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCAACAATTCAGCGTTACGCCAACGGTAAC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP033343.1\|AYP80367.1\|958161_958524_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP033343.1\|AYP80370.1\|962546_963281_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP033343.1\|AYP80372.1\|964562_964787_-\|hypothetical-protein	unknown	unknown	unknown
CP033343.1\|AYP80374.1\|968950_969859_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP033343.1\|AYP80368.1\|958959_960759_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP033343.1\|AYP80363.1\|951805_953443_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP033343.1\|AYP80360.1\|946805_949505_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
CP033343.1\|AYP80366.1\|957274_958072_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP033343.1\|AYP80359.1\|946019_946793_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185177
CP033343.1\|AYP80373.1\|967653_968700_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP033343.1\|AYP80365.1\|954959_955631_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP033343.1\|AYP80356.1\|944475_945012_-\|fimbrial-protein-SteF	unknown	unknown	gnl\|CDD\|185168
CP033343.1\|AYP80358.1\|945493_946000_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
CP033343.1\|AYP80361.1\|949584_950172_-\|fimbrial-protein-SteA	unknown	unknown	gnl\|CDD\|185169
CP033343.1\|AYP80364.1\|953525_954824_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP033343.1\|AYP80371.1\|963493_964447_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP033343.1\|AYP83852.1\|958452_958623_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP033343.1\|AYP80369.1\|960758_962471_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP033343.1\|AYP80357.1\|945008_945479_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
CP033343.1\|AYP80362.1\|950777_951578_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569

Protein	Function_ID	Function_description	E-value
CP033343.1\|AYP80367.1\|958161_958524_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP033343.1\|AYP80370.1\|962546_963281_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	3.66931e-138
CP033343.1\|AYP80374.1\|968950_969859_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP033343.1\|AYP80368.1\|958959_960759_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP033343.1\|AYP80363.1\|951805_953443_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP033343.1\|AYP80360.1\|946805_949505_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
CP033343.1\|AYP80366.1\|957274_958072_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	9.9681e-103
CP033343.1\|AYP80359.1\|946019_946793_-\|fimbrial-protein	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
CP033343.1\|AYP80373.1\|967653_968700_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP033343.1\|AYP80365.1\|954959_955631_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.3296e-155
CP033343.1\|AYP80356.1\|944475_945012_-\|fimbrial-protein-SteF	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	3.75281e-120
CP033343.1\|AYP80358.1\|945493_946000_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	1.2915e-104
CP033343.1\|AYP80361.1\|949584_950172_-\|fimbrial-protein-SteA	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
CP033343.1\|AYP80364.1\|953525_954824_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP033343.1\|AYP80371.1\|963493_964447_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP033343.1\|AYP80369.1\|960758_962471_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP033343.1\|AYP80357.1\|945008_945479_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.41178e-100
CP033343.1\|AYP80362.1\|950777_951578_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158

>CP033343.1|AYP80365.1|954959_955631_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILTKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP033343.1|AYP80364.1|953525_954824_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP033343.1|AYP80363.1|951805_953443_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP033343.1|AYP80362.1|950777_951578_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP033343.1|AYP80361.1|949584_950172_-|fimbrial-protein-SteA
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>CP033343.1|AYP80360.1|946805_949505_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVISDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNSYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGSGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>CP033343.1|AYP80359.1|946019_946793_-|fimbrial-protein
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKMTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>CP033343.1|AYP80358.1|945493_946000_-|fimbrial-protein
MTMLTRWKMLVLLCGGFVAGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGNNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>CP033343.1|AYP80357.1|945008_945479_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>CP033343.1|AYP80356.1|944475_945012_-|fimbrial-protein-SteF
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVVVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATEGTAFVLKEGITTINLQARLQKYAGEDVMPGEFSGTATVSFEYQ
>CP033343.1|AYP80366.1|957274_958072_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSREVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP033343.1|AYP80367.1|958161_958524_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP033343.1|AYP83852.1|958452_958623_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP033343.1|AYP80368.1|958959_960759_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLTDTAFAVFGLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNYIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP033343.1|AYP80369.1|960758_962471_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP033343.1|AYP80370.1|962546_963281_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAYLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP033343.1|AYP80371.1|963493_964447_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>CP033343.1|AYP80372.1|964562_964787_-|hypothetical-protein
MLTQLYIFFRNIYPTNNYYKFFRSFLLEEAIKEASSNAPLHKPKFKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP033343.1|AYP80373.1|967653_968700_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGIDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP033343.1|AYP80374.1|968950_969859_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF

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Crispr_ID: CP033343_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033343_2

966940-967639

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

11 spacers

The CRISPR arrays of CP033343_2

>merge|CP033343|2|966940-967639|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCGGGTGATTTTAATGATGTGCTGACTACCGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTTCTACAGTAAGGTTTACAGCCTGAGCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTACGGAAATTTGTGTCAGATATTGCCGGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCCCACAGTTCGTCGTGAATTGCGCAGGATAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTCTCAATAAATTTTCCCGGCTGCCGGATCTGTGTTCCCCGCGCCAGCGGGGATAAACCGATTGGGACCATTCCAATGGTCAGTTTCACGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAACCAGAATTGCTGAAGTAAATTGCAAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGATATCGAACGGGTTACGGCTGTCGGTGTAACTGTGTTCCCCGCGTCAGCGGGGATAAACCGATATTTTGGCAACTCGTCGTACATTATCGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGCACAACGCCTGGATATCCGCCCATCGGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTTTGTGGTAAATATGGAATCGATTAACCCCGTGTTCCCCGCGCCAGCGGGGATAAACAC

>CP033343|2|2|966940-967639|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGTGATTTTAATGATGTGCTGACTACCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTTCTACAGTAAGGTTTACAGCCTGAGCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTACGGAAATTTGTGTCAGATATTGCCGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCCACAGTTCGTCGTGAATTGCGCAGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCTCAATAAATTTTCCCGGCTGCCGGATCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGGGACCATTCCAATGGTCAGTTTCACGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACCAGAATTGCTGAAGTAAATTGCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATCGAACGGGTTACGGCTGTCGGTGTAACT
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ATATTTTGGCAACTCGTCGTACATTATCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCACAACGCCTGGATATCCGCCCATCGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTTTGTGGTAAATATGGAATCGATTAACCCC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>CP033343|2|2|966940-967639|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGTGATTTTAATGATGTGCTGACTACCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTTCTACAGTAAGGTTTACAGCCTGAGCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTACGGAAATTTGTGTCAGATATTGCCGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCCACAGTTCGTCGTGAATTGCGCAGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCTCAATAAATTTTCCCGGCTGCCGGATCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGGGACCATTCCAATGGTCAGTTTCACGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACCAGAATTGCTGAAGTAAATTGCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATCGAACGGGTTACGGCTGTCGGTGTAACT
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ATATTTTGGCAACTCGTCGTACATTATCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCACAACGCCTGGATATCCGCCCATCGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTTTGTGGTAAATATGGAATCGATTAACCCC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>CP033343|2|2|966940-967639|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGTGATTTTAATGATGTGCTGACTACCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTTCTACAGTAAGGTTTACAGCCTGAGCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTACGGAAATTTGTGTCAGATATTGCCGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCCACAGTTCGTCGTGAATTGCGCAGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCTCAATAAATTTTCCCGGCTGCCGGATCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGGGACCATTCCAATGGTCAGTTTCACGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACCAGAATTGCTGAAGTAAATTGCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATCGAACGGGTTACGGCTGTCGGTGTAACT
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ATATTTTGGCAACTCGTCGTACATTATCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCACAACGCCTGGATATCCGCCCATCGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTTTGTGGTAAATATGGAATCGATTAACCCC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP033343.1\|AYP80367.1\|958161_958524_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP033343.1\|AYP80370.1\|962546_963281_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP033343.1\|AYP80375.1\|969868_971308_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP033343.1\|AYP80378.1\|972464_972776_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP033343.1\|AYP80374.1\|968950_969859_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP033343.1\|AYP80380.1\|973504_973984_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP033343.1\|AYP80376.1\|971294_971900_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP033343.1\|AYP80377.1\|971917_972274_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP033343.1\|AYP80379.1\|972794_973505_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP033343.1\|AYP80381.1\|973980_975030_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP033343.1\|AYP80366.1\|957274_958072_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP033343.1\|AYP80365.1\|954959_955631_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP033343.1\|AYP80382.1\|975010_975772_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP033343.1\|AYP80369.1\|960758_962471_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP033343.1\|AYP80372.1\|964562_964787_-\|hypothetical-protein	unknown	unknown	unknown
CP033343.1\|AYP80368.1\|958959_960759_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP033343.1\|AYP80364.1\|953525_954824_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP033343.1\|AYP80373.1\|967653_968700_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP033343.1\|AYP83852.1\|958452_958623_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP033343.1\|AYP80371.1\|963493_964447_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277

Protein	Function_ID	Function_description	E-value
CP033343.1\|AYP80367.1\|958161_958524_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP033343.1\|AYP80370.1\|962546_963281_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	3.66931e-138
CP033343.1\|AYP80375.1\|969868_971308_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP033343.1\|AYP80378.1\|972464_972776_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP033343.1\|AYP80376.1\|971294_971900_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP033343.1\|AYP80377.1\|971917_972274_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP033343.1\|AYP80379.1\|972794_973505_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
CP033343.1\|AYP80381.1\|973980_975030_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP033343.1\|AYP80366.1\|957274_958072_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	9.9681e-103
CP033343.1\|AYP80365.1\|954959_955631_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.3296e-155
CP033343.1\|AYP80382.1\|975010_975772_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
CP033343.1\|AYP80369.1\|960758_962471_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP033343.1\|AYP80380.1\|973504_973984_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP033343.1\|AYP80368.1\|958959_960759_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP033343.1\|AYP80364.1\|953525_954824_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP033343.1\|AYP80371.1\|963493_964447_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP033343.1\|AYP80373.1\|967653_968700_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP033343.1\|AYP80374.1\|968950_969859_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0

>CP033343.1|AYP80372.1|964562_964787_-|hypothetical-protein
MLTQLYIFFRNIYPTNNYYKFFRSFLLEEAIKEASSNAPLHKPKFKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP033343.1|AYP80371.1|963493_964447_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>CP033343.1|AYP80370.1|962546_963281_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAYLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP033343.1|AYP80369.1|960758_962471_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP033343.1|AYP80368.1|958959_960759_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLTDTAFAVFGLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNYIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP033343.1|AYP83852.1|958452_958623_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP033343.1|AYP80367.1|958161_958524_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP033343.1|AYP80366.1|957274_958072_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSREVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP033343.1|AYP80365.1|954959_955631_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILTKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP033343.1|AYP80364.1|953525_954824_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP033343.1|AYP80373.1|967653_968700_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGIDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP033343.1|AYP80374.1|968950_969859_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP033343.1|AYP80375.1|969868_971308_+|sulfate-adenylyltransferase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLTPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELNERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP033343.1|AYP80376.1|971294_971900_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP033343.1|AYP80377.1|971917_972274_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP033343.1|AYP80378.1|972464_972776_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP033343.1|AYP80379.1|972794_973505_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP033343.1|AYP80380.1|973504_973984_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP033343.1|AYP80381.1|973980_975030_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP033343.1|AYP80382.1|975010_975772_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP033343_1	1.4\|956141\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956141-956172	32	CP033343.1	1424590-1424621	1	0.969

1. spacer 1.4|956141|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to position: 1424590-1424621, mismatch: 1, identity: 0.969

gcagattggtatctggtacgacgactgccgcc	CRISPR spacer
gcagattggtatccggtacgacgactgccgcc	Protospacer
*************.******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP033343_2	2.10\|967518\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	967518-967549	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	35345-35376	0	1.0
CP033343_3	3.1\|1450500\|42\|CP033343\|CRISPRCasFinder	1450500-1450541	42	MW013502	Salmonella virus L cI-40 13-am43, complete genome	31672-31713	0	1.0
CP033343_3	3.1\|1450500\|42\|CP033343\|CRISPRCasFinder	1450500-1450541	42	NC_004348	Enterobacteria phage ST64T, complete genome	14874-14915	0	1.0
CP033343_3	3.1\|1450500\|42\|CP033343\|CRISPRCasFinder	1450500-1450541	42	MW013503	Salmonella virus L cII-101, complete genome	31673-31714	0	1.0
CP033343_3	3.1\|1450500\|42\|CP033343\|CRISPRCasFinder	1450500-1450541	42	AY052766	Salmonella typhimurium bacteriophage ST64T, complete genome	14874-14915	0	1.0
CP033343_3	3.1\|1450500\|42\|CP033343\|CRISPRCasFinder	1450500-1450541	42	MF188997	Salmonella phage vB_SalP_PM43, complete genome	14769-14810	0	1.0
CP033343_2	2.10\|967518\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	967518-967549	32	NZ_CP029990	Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence	95164-95195	1	0.969
CP033343_2	2.10\|967518\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	967518-967549	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	9403-9434	1	0.969
CP033343_2	2.10\|967518\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	967518-967549	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	39737-39768	1	0.969
CP033343_2	2.10\|967518\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	967518-967549	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	113376-113407	1	0.969
CP033343_3	3.1\|1450500\|42\|CP033343\|CRISPRCasFinder	1450500-1450541	42	NC_011802	Salmonella enterica bacteriophage SE1, complete genome	15034-15075	2	0.952
CP033343_3	3.1\|1450500\|42\|CP033343\|CRISPRCasFinder	1450500-1450541	42	CP051278	Salmonella phage ST-87, complete genome	25843-25884	2	0.952
CP033343_3	3.1\|1450500\|42\|CP033343\|CRISPRCasFinder	1450500-1450541	42	CP051288	Salmonella phage ST-29, complete genome	38685-38726	2	0.952
CP033343_3	3.1\|1450500\|42\|CP033343\|CRISPRCasFinder	1450500-1450541	42	CP051285	Salmonella phage ST-32, complete genome	31779-31820	2	0.952
CP033343_3	3.1\|1450500\|42\|CP033343\|CRISPRCasFinder	1450500-1450541	42	NC_014900	Salmonella phage ST160, complete genome	15102-15143	2	0.952
CP033343_3	3.1\|1450500\|42\|CP033343\|CRISPRCasFinder	1450500-1450541	42	CP051272	Salmonella phage SW-70, complete genome	35832-35873	2	0.952
CP033343_1	1.10\|956507\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956507-956538	32	NZ_CP009113	Rhodococcus opacus strain 1CP plasmid pR1CP2, complete sequence	57554-57585	6	0.812
CP033343_3	3.1\|1450500\|42\|CP033343\|CRISPRCasFinder	1450500-1450541	42	NC_016160	Escherichia phage HK75, complete genome	28592-28633	6	0.857
CP033343_3	3.1\|1450500\|42\|CP033343\|CRISPRCasFinder	1450500-1450541	42	NC_019705	Enterobacteria phage mEpX2, complete genome	29046-29087	6	0.857
CP033343_3	3.1\|1450500\|42\|CP033343\|CRISPRCasFinder	1450500-1450541	42	KY979108	Escherichia phage ECP1, complete genome	427-468	6	0.857
CP033343_3	3.1\|1450500\|42\|CP033343\|CRISPRCasFinder	1450500-1450541	42	NC_019719	Enterobacteria phage HK633, complete genome	31740-31781	6	0.857
CP033343_3	3.1\|1450500\|42\|CP033343\|CRISPRCasFinder	1450500-1450541	42	JF974339	Enterobacteria phage IME10, complete genome	9723-9764	6	0.857
CP033343_3	3.1\|1450500\|42\|CP033343\|CRISPRCasFinder	1450500-1450541	42	NC_005344	Enterobacteria phage Sf6, complete genome	28410-28451	6	0.857
CP033343_2	2.10\|967518\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	967518-967549	32	NZ_CP040720	Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence	270963-270994	7	0.781
CP033343_1	1.6\|956263\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956263-956294	32	NC_024970	Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence	189898-189929	8	0.75
CP033343_1	1.6\|956263\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956263-956294	32	NZ_KJ396772	Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence	189898-189929	8	0.75
CP033343_1	1.6\|956263\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956263-956294	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1789627-1789658	8	0.75
CP033343_1	1.6\|956263\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956263-956294	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	1806317-1806348	8	0.75
CP033343_1	1.6\|956263\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956263-956294	32	NZ_CP024986	Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence	51148-51179	8	0.75
CP033343_1	1.6\|956263\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956263-956294	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	212687-212718	8	0.75
CP033343_1	1.6\|956263\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956263-956294	32	NC_017805	Deinococcus gobiensis I-0 plasmid P1, complete sequence	382523-382554	8	0.75
CP033343_1	1.6\|956263\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956263-956294	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	212685-212716	8	0.75
CP033343_1	1.6\|956263\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956263-956294	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1769551-1769582	8	0.75
CP033343_1	1.6\|956263\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956263-956294	32	MN536027	Pseudomonas phage vB_Pae-SS2019XII, complete genome	14176-14207	8	0.75
CP033343_1	1.18\|956995\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956995-957026	32	MH622910	Caudovirales sp. isolate ctdb_3, complete genome	4473-4504	8	0.75
CP033343_1	1.5\|956202\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956202-956233	32	NZ_CP014361	Methylomonas sp. DH-1 plasmid, complete sequence	141473-141504	9	0.719
CP033343_1	1.6\|956263\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956263-956294	32	NZ_CP049908	Hymenobacter sp. HDW8 plasmid p_unnamed1, complete sequence	276209-276240	9	0.719
CP033343_1	1.6\|956263\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956263-956294	32	NZ_CP013436	Burkholderia latens strain AU17928 isolate AU17928 plasmid pAU17928, complete sequence	20088-20119	9	0.719
CP033343_1	1.6\|956263\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956263-956294	32	NZ_CP049813	Monaibacterium sp. ALG8 plasmid unnamed2, complete sequence	69714-69745	9	0.719
CP033343_1	1.10\|956507\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956507-956538	32	MN096355	Mycobacterium phage Purky, complete genome	25716-25747	9	0.719
CP033343_1	1.11\|956568\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956568-956599	32	MN694197	Marine virus AFVG_250M303, complete genome	6755-6786	9	0.719
CP033343_2	2.2\|967030\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	967030-967061	32	AP018321	Nostoc sp. HK-01 plasmid plasmid3 DNA, complete genome	46531-46562	9	0.719
CP033343_2	2.7\|967335\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	967335-967366	32	NZ_CP021643	Campylobacter concisus strain P2CDO4 plasmid pICON, complete sequence	63580-63611	9	0.719
CP033343_2	2.7\|967335\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	967335-967366	32	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	2378875-2378906	9	0.719
CP033343_1	1.6\|956263\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956263-956294	32	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	171558-171589	10	0.688
CP033343_1	1.11\|956568\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956568-956599	32	KX119175	Helicobacter phage Pt22899G, complete genome	5088-5119	10	0.688
CP033343_1	1.11\|956568\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956568-956599	32	KX119175	Helicobacter phage Pt22899G, complete genome	16950-16981	10	0.688
CP033343_1	1.11\|956568\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956568-956599	32	JF734911	Helicobacter phage phiHP33, complete genome	19807-19838	10	0.688
CP033343_1	1.11\|956568\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956568-956599	32	KX119200	Helicobacter phage FrMEG235U, complete genome	14594-14625	10	0.688
CP033343_1	1.11\|956568\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956568-956599	32	KX119200	Helicobacter phage FrMEG235U, complete genome	19690-19721	10	0.688
CP033343_1	1.11\|956568\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956568-956599	32	KX119201	Helicobacter phage FrANT170U, complete genome	14594-14625	10	0.688
CP033343_1	1.11\|956568\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956568-956599	32	KX119201	Helicobacter phage FrANT170U, complete genome	19690-19721	10	0.688
CP033343_1	1.11\|956568\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956568-956599	32	KX119179	Helicobacter phage Pt5303G mobile element protein and transposase genes, complete cds	1261-1292	10	0.688
CP033343_1	1.13\|956690\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956690-956721	32	NZ_CP031899	Escherichia coli O113:H21 strain FWSEC0010 plasmid unnamed1, complete sequence	76272-76303	10	0.688
CP033343_1	1.13\|956690\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956690-956721	32	NZ_KM085450	Escherichia coli O104:H21 strain 94-3024 plasmid pO104_H21, complete sequence	141990-142021	10	0.688
CP033343_1	1.13\|956690\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956690-956721	32	NZ_CP009107	Escherichia coli strain 94-3024 plasmid pO104_H21, complete sequence	141989-142020	10	0.688
CP033343_1	1.13\|956690\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956690-956721	32	NZ_CP028382	Escherichia coli strain RM10466 plasmid pRM10466-1, complete sequence	155197-155228	10	0.688
CP033343_1	1.13\|956690\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956690-956721	32	NZ_CP027343	Escherichia coli strain 2014C-4587 plasmid unnamed, complete sequence	103401-103432	10	0.688
CP033343_1	1.13\|956690\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956690-956721	32	NZ_CP027311	Escherichia coli strain 2014C-4135 plasmid unnamed, complete sequence	50904-50935	10	0.688
CP033343_1	1.13\|956690\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956690-956721	32	NZ_CP027441	Escherichia coli strain 2012C-4502 plasmid unnamed, complete sequence	97903-97934	10	0.688
CP033343_1	1.13\|956690\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956690-956721	32	NZ_CP027585	Escherichia coli strain 00-3076 plasmid unnamed, complete sequence	13352-13383	10	0.688
CP033343_1	1.13\|956690\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956690-956721	32	NZ_CP027370	Escherichia coli strain 2014C-3307 plasmid unnamed2	109572-109603	10	0.688
CP033343_1	1.13\|956690\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956690-956721	32	NZ_CP027453	Escherichia coli strain 2014C-3338 plasmid unnamed, complete sequence	79387-79418	10	0.688
CP033343_1	1.13\|956690\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956690-956721	32	NZ_CP027451	Escherichia coli strain 2014C-3097 plasmid unnamed2, complete sequence	10648-10679	10	0.688
CP033343_1	1.13\|956690\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956690-956721	32	NZ_CP027372	Escherichia coli strain 2015C-3905 plasmid unnamed	102888-102919	10	0.688
CP033343_1	1.13\|956690\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956690-956721	32	NZ_CP028121	Escherichia coli O43 str. RM10042 plasmid pRM10042-2, complete sequence	49990-50021	10	0.688
CP033343_1	1.13\|956690\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956690-956721	32	NC_007365	Escherichia coli EH41 plasmid pO113, complete sequence	160071-160102	10	0.688
CP033343_1	1.13\|956690\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956690-956721	32	NZ_CP023542	Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178 plasmid pO104_H21, complete sequence	141994-142025	10	0.688
CP033343_1	1.13\|956690\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956690-956721	32	NZ_CP010192	Escherichia coli strain M8 plasmid A, complete genome	74522-74553	10	0.688
CP033343_1	1.13\|956690\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956690-956721	32	NZ_CP023164	Escherichia coli O22:H8 strain RM10809-3 plasmid pRM10809-3, complete sequence	35202-35233	10	0.688
CP033343_1	1.18\|956995\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956995-957026	32	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	1409535-1409566	10	0.688
CP033343_2	2.2\|967030\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	967030-967061	32	MG592456	Vibrio phage 1.081.O._10N.286.52.C2, partial genome	229928-229959	10	0.688
CP033343_2	2.8\|967396\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	967396-967427	32	NZ_CP042332	Bosea sp. F3-2 plasmid pB32-1, complete sequence	318607-318638	10	0.688
CP033343_1	1.14\|956751\|32\|CP033343\|PILER-CR,CRISPRCasFinder,CRT	956751-956782	32	NZ_CP015094	Pelagibaca abyssi strain JLT2014 plasmid pPABY6, complete sequence	53594-53625	11	0.656

1. spacer 2.10|967518|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 0, identity: 1.0

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatatccgcccatcggcc	Protospacer
********************************

2. spacer 3.1|1450500|42|CP033343|CRISPRCasFinder matches to MW013502 (Salmonella virus L cI-40 13-am43, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
******************************************

3. spacer 3.1|1450500|42|CP033343|CRISPRCasFinder matches to NC_004348 (Enterobacteria phage ST64T, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
******************************************

4. spacer 3.1|1450500|42|CP033343|CRISPRCasFinder matches to MW013503 (Salmonella virus L cII-101, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
******************************************

5. spacer 3.1|1450500|42|CP033343|CRISPRCasFinder matches to AY052766 (Salmonella typhimurium bacteriophage ST64T, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
******************************************

6. spacer 3.1|1450500|42|CP033343|CRISPRCasFinder matches to MF188997 (Salmonella phage vB_SalP_PM43, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
******************************************

7. spacer 2.10|967518|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029990 (Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

8. spacer 2.10|967518|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

9. spacer 2.10|967518|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

10. spacer 2.10|967518|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

11. spacer 3.1|1450500|42|CP033343|CRISPRCasFinder matches to NC_011802 (Salmonella enterica bacteriophage SE1, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
***************************** *******.****

12. spacer 3.1|1450500|42|CP033343|CRISPRCasFinder matches to CP051278 (Salmonella phage ST-87, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
***************************** *******.****

13. spacer 3.1|1450500|42|CP033343|CRISPRCasFinder matches to CP051288 (Salmonella phage ST-29, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
***************************** *******.****

14. spacer 3.1|1450500|42|CP033343|CRISPRCasFinder matches to CP051285 (Salmonella phage ST-32, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
***************************** *******.****

15. spacer 3.1|1450500|42|CP033343|CRISPRCasFinder matches to NC_014900 (Salmonella phage ST160, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
***************************** *******.****

16. spacer 3.1|1450500|42|CP033343|CRISPRCasFinder matches to CP051272 (Salmonella phage SW-70, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
***************************** *******.****

17. spacer 1.10|956507|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009113 (Rhodococcus opacus strain 1CP plasmid pR1CP2, complete sequence) position: , mismatch: 6, identity: 0.812

gcgctgaccatgattgcagtcagg--gtcggcat	CRISPR spacer
tcgctgaccatgattgcagccgggtcgtcggg--	Protospacer
 ******************.*.**  *****

18. spacer 3.1|1450500|42|CP033343|CRISPRCasFinder matches to NC_016160 (Escherichia phage HK75, complete genome) position: , mismatch: 6, identity: 0.857

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatggcgcggctctcagcggaga	Protospacer
***********************.******** ****..* .

19. spacer 3.1|1450500|42|CP033343|CRISPRCasFinder matches to NC_019705 (Enterobacteria phage mEpX2, complete genome) position: , mismatch: 6, identity: 0.857

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatggcgcggctctcagcggaga	Protospacer
***********************.******** ****..* .

20. spacer 3.1|1450500|42|CP033343|CRISPRCasFinder matches to KY979108 (Escherichia phage ECP1, complete genome) position: , mismatch: 6, identity: 0.857

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatggcgcggctctcagcggaga	Protospacer
***********************.******** ****..* .

21. spacer 3.1|1450500|42|CP033343|CRISPRCasFinder matches to NC_019719 (Enterobacteria phage HK633, complete genome) position: , mismatch: 6, identity: 0.857

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatggcgcggctctcagcggaga	Protospacer
***********************.******** ****..* .

22. spacer 3.1|1450500|42|CP033343|CRISPRCasFinder matches to JF974339 (Enterobacteria phage IME10, complete genome) position: , mismatch: 6, identity: 0.857

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatggcgcggctctcagcggaga	Protospacer
***********************.******** ****..* .

23. spacer 3.1|1450500|42|CP033343|CRISPRCasFinder matches to NC_005344 (Enterobacteria phage Sf6, complete genome) position: , mismatch: 6, identity: 0.857

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatggcgcggctctcagcggaga	Protospacer
***********************.******** ****..* .

24. spacer 2.10|967518|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgagaaacgcctggatctccgcccaccgccg	Protospacer
*** . *********** ********.** *

25. spacer 1.6|956263|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NC_024970 (Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc--	CRISPR spacer
cgcgggcgctcgacgcgctgcac--gtggccctg	Protospacer
***.****** ************  ...*.**

26. spacer 1.6|956263|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KJ396772 (Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc--	CRISPR spacer
cgcgggcgctcgacgcgctgcac--gtggccctg	Protospacer
***.****** ************  ...*.**

27. spacer 1.6|956263|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
cgcagtcgctcgacgcgctgcaccgcgtggcg	Protospacer
***** **** ************ *   * *

28. spacer 1.6|956263|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
cgcagtcgctcgacgcgctgcaccgcgtggcg	Protospacer
***** **** ************ *   * *

29. spacer 1.6|956263|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024986 (Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc--	CRISPR spacer
cgcgggcgctcgacgcgctgcac--gtggccctg	Protospacer
***.****** ************  ...*.**

30. spacer 1.6|956263|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
cgcagtcgctcgacgcgctgcaccgcgtggcg	Protospacer
***** **** ************ *   * *

31. spacer 1.6|956263|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NC_017805 (Deinococcus gobiensis I-0 plasmid P1, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc----	CRISPR spacer
cgcaggcgctggccgagctgc----acgatccagag	Protospacer
************ ** *****    **..***

32. spacer 1.6|956263|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
cgcagtcgctcgacgcgctgcaccgcgtggcg	Protospacer
***** **** ************ *   * *

33. spacer 1.6|956263|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
cgcagtcgctcgacgcgctgcaccgcgtggcg	Protospacer
***** **** ************ *   * *

34. spacer 1.6|956263|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to MN536027 (Pseudomonas phage vB_Pae-SS2019XII, complete genome) position: , mismatch: 8, identity: 0.75

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
tccaggcgctggaggcgctgcgcagcaagagc	Protospacer
. *********** *******.***  **  *

35. spacer 1.18|956995|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to MH622910 (Caudovirales sp. isolate ctdb_3, complete genome) position: , mismatch: 8, identity: 0.75

---aaacaccaacattacggcacgcaagaggttat	CRISPR spacer
ttcaagcgtcag---tacggcacgcaagaagttat	Protospacer
   **.*..**.   **************.*****

36. spacer 1.5|956202|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014361 (Methylomonas sp. DH-1 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

actgttaaaatgcttcaggacggtgaagtaaa	CRISPR spacer
caagcgaaaatgcttcaggatggtgaaatatg	Protospacer
   *. **************.******.** .

37. spacer 1.6|956263|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049908 (Hymenobacter sp. HDW8 plasmid p_unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
cgcgggcgctggacgcgccgcacaagaccttt	Protospacer
***.**************.*****..   *..

38. spacer 1.6|956263|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013436 (Burkholderia latens strain AU17928 isolate AU17928 plasmid pAU17928, complete sequence) position: , mismatch: 9, identity: 0.719

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
cgcaggcgctggagacgctgcacgatcgaaca	Protospacer
************* .********.. *.. *

39. spacer 1.6|956263|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049813 (Monaibacterium sp. ALG8 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
tgcaggccctgaacgcgctgcacatctatcac	Protospacer
.****** ***.************  .* . *

40. spacer 1.10|956507|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to MN096355 (Mycobacterium phage Purky, complete genome) position: , mismatch: 9, identity: 0.719

gcgctgaccatgattgcagtcagggtcggcat	CRISPR spacer
ctggctgccatgatcgcagtcatggtcggcct	Protospacer
 .* . .*******.******* ******* *

41. spacer 1.11|956568|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to MN694197 (Marine virus AFVG_250M303, complete genome) position: , mismatch: 9, identity: 0.719

ggggaatgatgaaacgaattagtaaaaacaaa	CRISPR spacer
aatagggaatgaaacgtattagtaaaaacaaa	Protospacer
.. ... .******** ***************

42. spacer 2.2|967030|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to AP018321 (Nostoc sp. HK-01 plasmid plasmid3 DNA, complete genome) position: , mismatch: 9, identity: 0.719

gcgttctacagtaaggtttacagcctgagcaa	CRISPR spacer
tgcctattcagtaagggttacagccttagcat	Protospacer
   .* * ******** ********* ****

43. spacer 2.7|967335|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021643 (Campylobacter concisus strain P2CDO4 plasmid pICON, complete sequence) position: , mismatch: 9, identity: 0.719

aaaccagaattgctgaagtaaattgcaaaaga	CRISPR spacer
aaacaagatttgctgaagtaaatttagcattt	Protospacer
**** *** ***************  . *

44. spacer 2.7|967335|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

aaaccagaattgctgaagtaaattgcaaaaga	CRISPR spacer
acgggcgaattgctgaaggaaatcgcaaaaat	Protospacer
* .   ************ ****.******.

45. spacer 1.6|956263|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

cgcaggcgctggacgcgctgcacagacagtcc	CRISPR spacer
gtcaggcgctgcacgccctgcacagccgcgag	Protospacer
  ********* **** ******** *.

46. spacer 1.11|956568|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to KX119175 (Helicobacter phage Pt22899G, complete genome) position: , mismatch: 10, identity: 0.688

ggggaatgatgaaacgaattagtaaaaacaaa	CRISPR spacer
tgcctttgattaaacgacttagtaaaaacctt	Protospacer
 *    **** ****** ***********

47. spacer 1.11|956568|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to KX119175 (Helicobacter phage Pt22899G, complete genome) position: , mismatch: 10, identity: 0.688

ggggaatgatgaaacgaattagtaaaaacaaa	CRISPR spacer
tgcctttgattaaacgacttagtaaaaacctt	Protospacer
 *    **** ****** ***********

48. spacer 1.11|956568|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to JF734911 (Helicobacter phage phiHP33, complete genome) position: , mismatch: 10, identity: 0.688

ggggaatgatgaaacgaattagtaaaaacaaa	CRISPR spacer
tgcctttgattaaacgacttagtaaaaacctt	Protospacer
 *    **** ****** ***********

49. spacer 1.11|956568|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to KX119200 (Helicobacter phage FrMEG235U, complete genome) position: , mismatch: 10, identity: 0.688

ggggaatgatgaaacgaattagtaaaaacaaa	CRISPR spacer
tgcctttgattaaacgacttagtaaaaacctt	Protospacer
 *    **** ****** ***********

50. spacer 1.11|956568|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to KX119200 (Helicobacter phage FrMEG235U, complete genome) position: , mismatch: 10, identity: 0.688

ggggaatgatgaaacgaattagtaaaaacaaa	CRISPR spacer
tgcctttgattaaacgacttagtaaaaacctt	Protospacer
 *    **** ****** ***********

51. spacer 1.11|956568|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to KX119201 (Helicobacter phage FrANT170U, complete genome) position: , mismatch: 10, identity: 0.688

ggggaatgatgaaacgaattagtaaaaacaaa	CRISPR spacer
tgcctttgattaaacgacttagtaaaaacctt	Protospacer
 *    **** ****** ***********

52. spacer 1.11|956568|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to KX119201 (Helicobacter phage FrANT170U, complete genome) position: , mismatch: 10, identity: 0.688

ggggaatgatgaaacgaattagtaaaaacaaa	CRISPR spacer
tgcctttgattaaacgacttagtaaaaacctt	Protospacer
 *    **** ****** ***********

53. spacer 1.11|956568|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to KX119179 (Helicobacter phage Pt5303G mobile element protein and transposase genes, complete cds) position: , mismatch: 10, identity: 0.688

ggggaatgatgaaacgaattagtaaaaacaaa	CRISPR spacer
tgcctttgattaaacgacttagtaaaaacctt	Protospacer
 *    **** ****** ***********

54. spacer 1.13|956690|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031899 (Escherichia coli O113:H21 strain FWSEC0010 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

55. spacer 1.13|956690|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM085450 (Escherichia coli O104:H21 strain 94-3024 plasmid pO104_H21, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

56. spacer 1.13|956690|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009107 (Escherichia coli strain 94-3024 plasmid pO104_H21, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

57. spacer 1.13|956690|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028382 (Escherichia coli strain RM10466 plasmid pRM10466-1, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

58. spacer 1.13|956690|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027343 (Escherichia coli strain 2014C-4587 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

59. spacer 1.13|956690|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027311 (Escherichia coli strain 2014C-4135 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

60. spacer 1.13|956690|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027441 (Escherichia coli strain 2012C-4502 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

61. spacer 1.13|956690|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027585 (Escherichia coli strain 00-3076 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

62. spacer 1.13|956690|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027370 (Escherichia coli strain 2014C-3307 plasmid unnamed2) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

63. spacer 1.13|956690|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027453 (Escherichia coli strain 2014C-3338 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

64. spacer 1.13|956690|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027451 (Escherichia coli strain 2014C-3097 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

65. spacer 1.13|956690|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027372 (Escherichia coli strain 2015C-3905 plasmid unnamed) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

66. spacer 1.13|956690|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028121 (Escherichia coli O43 str. RM10042 plasmid pRM10042-2, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

67. spacer 1.13|956690|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NC_007365 (Escherichia coli EH41 plasmid pO113, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

68. spacer 1.13|956690|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023542 (Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178 plasmid pO104_H21, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

69. spacer 1.13|956690|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010192 (Escherichia coli strain M8 plasmid A, complete genome) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

70. spacer 1.13|956690|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023164 (Escherichia coli O22:H8 strain RM10809-3 plasmid pRM10809-3, complete sequence) position: , mismatch: 10, identity: 0.688

gaccgatccgggaacaaccggaacaacgcggg	CRISPR spacer
acaataaaagggaacaacctgaacaacgccgg	Protospacer
.    *   ********** ********* **

71. spacer 1.18|956995|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

aaacaccaacattacggcacgcaagaggttat	CRISPR spacer
gctcaccgacattacggcgcgcaagaaggcgg	Protospacer
.  ****.**********.*******.* ..

72. spacer 2.2|967030|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to MG592456 (Vibrio phage 1.081.O._10N.286.52.C2, partial genome) position: , mismatch: 10, identity: 0.688

gcgttctacagtaaggtttacagcctgagcaa	CRISPR spacer
gaacggctgagtaacgttaacagcctgagcaa	Protospacer
* ..  .  ***** *** *************

73. spacer 2.8|967396|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042332 (Bosea sp. F3-2 plasmid pB32-1, complete sequence) position: , mismatch: 10, identity: 0.688

atatcgaacgggttacggctgtcggtgtaact	CRISPR spacer
tgaccgaccgggtaacggctgtcggtggcgac	Protospacer
  *.*** ***** *************  . .

74. spacer 1.14|956751|32|CP033343|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015094 (Pelagibaca abyssi strain JLT2014 plasmid pPABY6, complete sequence) position: , mismatch: 11, identity: 0.656

ccagtaacgctggcgtgataattttggtcgcc	CRISPR spacer
aagaagccgccggcgtgataattctggtcgat	Protospacer
  .. . ***.************.****** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

639652 : 679586

Cronobacter_phage(68.42%)

head,portal,capsid,integrase,tRNA,holin,tail,terminase

attL 630297:630320|attR 678301:678324

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
630297:630320	attL	NA	NA	NA	NA
AYP80059.1\|639652_640690_-\|integrase	integrase	F1BUS9	Erwinia_phage	6.6e-122	64.7
AYP80060.1\|640693_641260_-	hypothetical protein	Q4ZA70	Staphylococcus_virus	3.0e-20	35.0
AYP80061.1\|641276_641858_-	phage repressor protein	F1BUS8	Erwinia_phage	2.5e-33	39.8
AYP80062.1\|641993_642215_+	regulator	NA	NA	NA	NA
AYP80063.1\|642245_642749_+	hypothetical protein	F1BUN6	Cronobacter_phage	3.5e-60	72.5
AYP80064.1\|642758_642986_+	hypothetical protein	NA	NA	NA	NA
AYP80065.1\|642975_643401_+	hypothetical protein	F1BUN5	Cronobacter_phage	7.6e-24	50.4
AYP80066.1\|643400_643802_+	hypothetical protein	F1BUN2	Cronobacter_phage	1.3e-49	67.7
AYP80067.1\|643869_644100_+	DUF2732 family protein	NA	NA	NA	NA
AYP80068.1\|644090_644945_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	F1BUN1	Cronobacter_phage	1.3e-131	83.3
AYP80069.1\|644941_645943_+	DNA cytosine methyltransferase	A0A0M3ULA1	Salmonella_phage	9.9e-99	56.8
AYP80070.1\|645935_647975_+	replication endonuclease	F1BUM9	Cronobacter_phage	3.8e-299	75.4
AYP80071.1\|648094_648301_+	hypothetical protein	NA	NA	NA	NA
AYP80072.1\|648274_648598_-	transcriptional regulator	F1BUM8	Cronobacter_phage	8.0e-50	92.3
AYP80073.1\|648594_649656_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	2.3e-162	77.1
AYP80074.1\|649652_651428_-\|terminase	terminase	F1BUM5	Cronobacter_phage	4.1e-289	82.4
AYP80075.1\|651588_652392_+\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	4.1e-79	56.4
AYP80076.1\|652453_653476_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.1e-158	81.2
AYP80077.1\|653479_654181_+\|terminase	terminase	F1BUM0	Cronobacter_phage	9.4e-88	66.8
AYP80078.1\|654226_654730_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	5.2e-64	82.0
AYP80079.1\|654726_655233_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	1.5e-63	69.1
AYP80080.1\|655229_655937_+	hypothetical protein	F1BUL6	Cronobacter_phage	6.8e-102	76.9
AYP80081.1\|655933_657061_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	3.3e-175	83.5
AYP80082.1\|657057_657513_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.5e-57	72.2
AYP80083.1\|657522_657816_+\|holin	holin	C7BGD7	Burkholderia_phage	1.3e-14	46.2
AYP80084.1\|657812_658154_+	M15 family peptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
AYP80085.1\|658153_658486_+	hypothetical protein	F1BUL2	Cronobacter_phage	1.1e-35	70.0
AYP80086.1\|658457_658646_+	hypothetical protein	F1BUL1	Cronobacter_phage	1.1e-22	80.6
AYP80087.1\|658632_658890_+	hypothetical protein	A5X9I7	Aeromonas_virus	3.6e-21	63.4
AYP80088.1\|659077_661048_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	9.5e-271	69.9
AYP80089.1\|661044_661374_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
AYP80090.1\|661370_662555_+	hypothetical protein	F1BUK6	Cronobacter_phage	6.7e-179	78.4
AYP80091.1\|662541_663135_+	hypothetical protein	F1BUK5	Cronobacter_phage	1.4e-89	82.1
AYP80092.1\|663144_665250_+\|tail	phage tail protein	S4TP62	Salmonella_phage	5.3e-219	76.2
AYP80093.1\|665262_665817_+\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	4.6e-98	97.2
AYP80094.1\|665806_666532_+	hypothetical protein	F1BUK1	Cronobacter_phage	6.6e-68	56.4
AYP80095.1\|666503_667049_+	hypothetical protein	F1BUJ9	Cronobacter_phage	3.2e-59	72.0
AYP80096.1\|667048_668752_+	hypothetical protein	F1BUJ7	Cronobacter_phage	6.4e-223	81.3
AYP83841.1\|668910_669090_+	hypothetical protein	NA	NA	NA	NA
AYP80097.1\|669924_670431_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
AYP83842.1\|670554_672402_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
AYP80098.1\|672551_674297_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
AYP80099.1\|674532_674748_-	30S ribosomal protein S21	NA	NA	NA	NA
AYP80100.1\|674975_675989_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.8e-109	59.5
AYP80101.1\|675892_676231_-	hypothetical protein	NA	NA	NA	NA
AYP80102.1\|676244_676856_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
AYP80103.1\|676962_677322_+	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA
AYP80104.1\|677419_678241_+	undecaprenyl-diphosphatase	NA	NA	NA	NA
AYP80105.1\|678344_679586_-\|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	A0A0F6YPT7	Sinorhizobium_phage	6.5e-92	47.9
678301:678324	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1437841 : 1484282

Salmonella_phage(68.66%)

coat,portal,protease,lysis,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYP80791.1\|1437841_1438780_+\|protease	omptin family outer membrane protease PgtE	NA	NA	NA	NA
AYP80792.1\|1438801_1439032_-	hypothetical protein	C6ZR23	Salmonella_phage	1.2e-10	81.8
AYP80793.1\|1439041_1439245_-	hypothetical protein	C6ZR24	Salmonella_phage	4.7e-32	95.5
AYP80794.1\|1439341_1439977_-	Eac protein	A0A075B8I7	Enterobacteria_phage	4.1e-106	87.7
AYP80795.1\|1440221_1440488_-	hypothetical protein	A0A1V0E5L9	Salmonella_phage	1.1e-44	96.6
AYP80796.1\|1441459_1441717_-	hypothetical protein	A0A192Y5W0	Salmonella_phage	5.9e-40	95.3
AYP80797.1\|1441718_1442351_-	ead/Ea22-like family protein	A0A1R3Y5T1	Salmonella_virus	2.1e-25	44.5
AYP80798.1\|1442347_1442758_-	hypothetical protein	A0A1R3Y5S0	Salmonella_virus	5.7e-69	94.1
AYP80799.1\|1442754_1442925_-	DUF2737 family protein	A0A220NQV6	Salmonella_phage	6.1e-25	100.0
AYP80800.1\|1442935_1443229_-	DUF2856 family protein	A0A2H4FNA1	Salmonella_phage	1.4e-48	96.9
AYP80801.1\|1443275_1443560_-	sigma-70 family RNA polymerase sigma factor	Q76H41	Enterobacteria_phage	1.4e-45	100.0
AYP80802.1\|1443559_1444267_-	recombinase	K7PKU3	Enterobacteria_phage	1.3e-116	86.4
AYP80803.1\|1444274_1444463_-	hypothetical protein	C6ZR38	Salmonella_phage	1.7e-23	82.3
AYP80804.1\|1444550_1444745_-	hypothetical protein	NA	NA	NA	NA
AYP80805.1\|1444729_1444864_-	hypothetical protein	K7PHK2	Enterobacteria_phage	2.1e-09	78.0
AYP80806.1\|1444949_1445204_-	hypothetical protein	NA	NA	NA	NA
AYP80807.1\|1445356_1445989_-	hypothetical protein	Q5G8T6	Enterobacteria_phage	9.4e-79	68.4
AYP80808.1\|1446066_1446429_-	antitermination protein	C6ZR44	Salmonella_phage	2.3e-58	95.0
AYP80809.1\|1446796_1447006_+	fumarate hydratase FumD	I6R0R9	Salmonella_phage	2.2e-29	95.7
AYP80810.1\|1447147_1447906_-	DUF1828 domain-containing protein	NA	NA	NA	NA
AYP80811.1\|1447902_1448439_-	hypothetical protein	NA	NA	NA	NA
AYP80812.1\|1448533_1449187_-	LexA family transcriptional regulator	I6R0S2	Salmonella_phage	3.3e-127	99.1
AYP80813.1\|1449296_1449506_+	XRE family transcriptional regulator	I6S1U2	Salmonella_phage	2.1e-35	100.0
AYP80814.1\|1449625_1449907_+	hypothetical protein	Q76H54	Enterobacteria_phage	7.4e-44	98.9
AYP80815.1\|1449941_1450088_+	DUF2740 domain-containing protein	A0A075B8K7	Enterobacteria_phage	1.5e-19	100.0
AYP80816.1\|1450080_1450980_+	DNA replication protein	A0A220NQX5	Salmonella_phage	2.1e-156	100.0
AYP80817.1\|1450954_1452406_+	helicase DnaB	Q7Y2K5	Escherichia_phage	4.0e-274	99.4
AYP80818.1\|1452481_1452808_+	hypothetical protein	Q716D0	Shigella_phage	4.2e-59	99.1
AYP80819.1\|1452804_1453005_+	hypothetical protein	Q716C9	Shigella_phage	4.6e-32	100.0
AYP80820.1\|1453016_1453268_+	hypothetical protein	A0A220NQX3	Salmonella_phage	2.9e-23	65.5
AYP80821.1\|1453271_1453478_+	hypothetical protein	I1TEG6	Salmonella_phage	2.7e-35	98.5
AYP80822.1\|1453492_1453930_+	recombination protein NinB	C6ZR55	Salmonella_phage	7.7e-80	100.0
AYP80823.1\|1453926_1454100_+	protein ninD	C6ZR56	Salmonella_phage	5.2e-32	100.0
AYP80824.1\|1454066_1454243_+	NinE family protein	I6RSI9	Salmonella_phage	4.3e-26	96.6
AYP80825.1\|1454239_1454416_+	NinF family protein	A0A0M4S6T3	Salmonella_phage	1.0e-27	96.6
AYP80826.1\|1454378_1454675_+	hypothetical protein	A0A0M3ULJ7	Salmonella_phage	7.5e-47	98.9
AYP80827.1\|1454671_1455067_+	RusA family crossover junction endodeoxyribonuclease	A0A0M4REJ2	Salmonella_phage	1.4e-69	96.9
AYP80828.1\|1455063_1455267_+	protein ninH	Q5G8R8	Enterobacteria_phage	7.2e-33	100.0
AYP80829.1\|1455247_1455427_+	hypothetical protein	A0A1V0E5I7	Salmonella_phage	7.1e-24	100.0
AYP80830.1\|1455423_1456047_+	antitermination protein	C6ZR62	Salmonella_phage	1.5e-113	99.0
AYP80831.1\|1456320_1456518_+	hypothetical protein	NA	NA	NA	NA
AYP80832.1\|1456605_1457124_+	endodeoxyribonuclease	A0A1V0E5R7	Salmonella_phage	5.9e-95	100.0
AYP80833.1\|1457347_1457620_+	hypothetical protein	A0A1V0E5R8	Salmonella_phage	1.1e-41	100.0
AYP80834.1\|1457619_1458117_+	lysozyme	A0A1V0E5Q7	Salmonella_phage	3.0e-88	93.9
AYP80835.1\|1458205_1458673_+\|lysis	lysis protein	A0A291AWW3	Escherichia_phage	1.0e-74	94.8
AYP80836.1\|1458660_1458813_+	hypothetical protein	K7PKL2	Enterobacteria_phage	1.2e-21	100.0
AYP80837.1\|1459015_1459534_+	Rha family transcriptional regulator	A0A2D1GLJ3	Escherichia_phage	3.2e-93	100.0
AYP80838.1\|1459818_1460199_+	hypothetical protein	Q716B1	Shigella_phage	1.0e-64	97.6
AYP80839.1\|1460302_1460545_+	DUF2560 family protein	A0A1R3Y5V5	Salmonella_virus	1.7e-36	100.0
AYP80840.1\|1460547_1460952_+	Decoration protein	C6ZR73	Salmonella_phage	1.5e-66	99.3
AYP80841.1\|1460955_1461444_+	DNA-packaging protein	A8CGG1	Salmonella_phage	2.9e-88	100.0
AYP80842.1\|1461421_1462921_+\|terminase	terminase	A0A0M4S5Z3	Salmonella_phage	3.1e-306	99.6
AYP80843.1\|1462920_1465098_+\|portal	portal protein	I6R968	Salmonella_phage	0.0e+00	98.2
AYP80844.1\|1465111_1466023_+	scaffolding protein	A0A1R3Y5R6	Salmonella_virus	1.1e-160	99.7
AYP80845.1\|1466022_1467315_+\|coat	coat protein	C6ZR10	Salmonella_phage	3.2e-243	99.3
AYP80846.1\|1467355_1467916_+	hypothetical protein	I6S1J7	Salmonella_phage	7.0e-102	98.4
AYP80847.1\|1467899_1468400_+	hypothetical protein	I1TEJ0	Salmonella_phage	3.2e-90	100.0
AYP80848.1\|1468359_1469778_+	hypothetical protein	Q9AYZ4	Salmonella_phage	1.5e-249	89.4
AYP80849.1\|1469799_1470333_+	endodeoxyribonuclease	A0A1V0E5R7	Salmonella_phage	7.0e-35	47.7
AYP80850.1\|1470325_1471027_+\|tail	phage tail protein	A0A0M4QWW6	Salmonella_phage	2.8e-68	91.8
AYP80851.1\|1471026_1471488_+	DUF2824 family protein	C6ZR15	Salmonella_phage	4.3e-73	84.9
AYP80852.1\|1471490_1472180_+	DNA transfer protein	B9UDK9	Salmonella_phage	1.9e-88	89.8
AYP83871.1\|1472222_1473560_+	DNA transfer protein	I1TEJ5	Salmonella_phage	3.5e-240	98.4
AYP80853.1\|1473559_1475563_+	injection protein	A0A2I7QW93	Vibrio_phage	2.0e-98	36.9
AYP80854.1\|1475571_1475892_-	hypothetical protein	NA	NA	NA	NA
AYP80855.1\|1475922_1476288_+	hypothetical protein	A0A192Y6W5	Salmonella_phage	2.1e-67	100.0
AYP80856.1\|1476301_1476526_-	hypothetical protein	NA	NA	NA	NA
AYP80857.1\|1476551_1476737_+	hypothetical protein	I6RSG3	Salmonella_phage	1.1e-08	100.0
AYP80858.1\|1476711_1476921_-	hypothetical protein	I6R975	Salmonella_phage	5.9e-30	98.6
AYP80859.1\|1476917_1477154_-	Arc family DNA-binding protein	G0ZNE9	Cronobacter_phage	2.2e-17	59.2
AYP80860.1\|1477242_1477416_+	Arc family DNA-binding protein	NA	NA	NA	NA
AYP80861.1\|1477478_1478357_+	phage repressor protein/antirepressor Ant	I6R977	Salmonella_phage	6.9e-96	78.5
AYP80862.1\|1478457_1480218_+	hypothetical protein	I6S5Y0	Salmonella_phage	1.0e-58	89.1
AYP80863.1\|1480253_1481705_-	hypothetical protein	NA	NA	NA	NA
AYP80864.1\|1481701_1482619_-	glycosyltransferase	I1TED8	Salmonella_phage	1.3e-161	93.1
AYP80865.1\|1482615_1482978_-	GtrA family protein	I1TED9	Salmonella_phage	6.2e-51	82.5
AYP80866.1\|1483112_1484282_-	DUF4102 domain-containing protein	I6R0M2	Salmonella_phage	1.7e-227	99.0

DBSCAN-SWA_3

1726798 : 1735969

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYP81088.1\|1726798_1727746_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.0
AYP81089.1\|1727729_1728461_+	ABC transporter permease	NA	NA	NA	NA
AYP81090.1\|1728441_1728549_-	protein YohO	NA	NA	NA	NA
AYP81091.1\|1728608_1729340_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AYP81092.1\|1729562_1731248_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
AYP81093.1\|1731244_1731964_+	DNA-binding response regulator	NA	NA	NA	NA
AYP81094.1\|1732010_1732478_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.0e-74	90.3
AYP81095.1\|1732534_1733065_-	DUF1307 domain-containing protein	NA	NA	NA	NA
AYP81096.1\|1733236_1733695_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AYP81097.1\|1733935_1735969_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_4

1893278 : 1900510

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYP81242.1\|1893278_1893698_+	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AYP81243.1\|1893700_1894969_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.9e-227	92.2
AYP81244.1\|1895414_1895627_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AYP83888.1\|1895637_1895826_+	cold-shock protein	NA	NA	NA	NA
AYP81245.1\|1896085_1897270_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	5.1e-110	57.1
AYP81246.1\|1897919_1898231_+	hypothetical protein	NA	NA	NA	NA
AYP81247.1\|1898310_1899006_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
AYP81248.1\|1899079_1900510_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_5

4297328 : 4344975

Burkholderia_phage(36.36%)

plate,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYP83456.1\|4297328_4298327_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
AYP83457.1\|4298414_4299725_-	conjugal transfer protein	NA	NA	NA	NA
AYP83458.1\|4299971_4300487_+	transcriptional regulator Zur	NA	NA	NA	NA
AYP83459.1\|4300585_4300795_-	CsbD family protein	NA	NA	NA	NA
AYP83987.1\|4300816_4300930_-	hypothetical protein	NA	NA	NA	NA
AYP83460.1\|4300926_4302252_-	MATE family efflux transporter DinF	NA	NA	NA	NA
AYP83461.1\|4302430_4303039_-	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
AYP83462.1\|4303147_4303516_-	diacylglycerol kinase	NA	NA	NA	NA
AYP83463.1\|4303686_4306107_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA
AYP83464.1\|4306205_4307078_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
AYP83465.1\|4307091_4307589_-	chorismate lyase	NA	NA	NA	NA
AYP83466.1\|4307769_4308687_-	maltose operon protein MalM	NA	NA	NA	NA
AYP83467.1\|4308850_4310206_-	maltoporin	NA	NA	NA	NA
AYP83468.1\|4310294_4311404_-	maltose/maltodextrin import ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
AYP83469.1\|4311765_4312956_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
AYP83470.1\|4313087_4314632_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
AYP83471.1\|4314646_4315537_+	maltose ABC transporter permease	NA	NA	NA	NA
AYP83472.1\|4315702_4316113_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
AYP83473.1\|4316255_4318352_-	YjbH domain-containing protein	NA	NA	NA	NA
AYP83474.1\|4318351_4319089_-	hypothetical protein	NA	NA	NA	NA
AYP83475.1\|4319085_4319724_-	YjbF family lipoprotein	NA	NA	NA	NA
AYP83476.1\|4319787_4320030_-	outer membrane protein	NA	NA	NA	NA
AYP83477.1\|4320473_4322123_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
AYP83478.1\|4322511_4323861_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
AYP83479.1\|4323995_4324343_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	7.5e-22	52.6
AYP83480.1\|4324919_4325207_+	hypothetical protein	Q6QIC8	Burkholderia_phage	5.1e-16	48.1
AYP83481.1\|4325209_4325815_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	1.0e-58	58.8
AYP83482.1\|4325827_4326142_+	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
AYP83483.1\|4326301_4326757_+	hypothetical protein	NA	NA	NA	NA
AYP83484.1\|4326753_4326951_+	hypothetical protein	Q6QIB1	Burkholderia_phage	5.1e-07	52.9
AYP83485.1\|4326940_4328368_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.8e-194	71.2
AYP83486.1\|4328367_4328892_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	1.8e-67	69.0
AYP83487.1\|4328943_4329261_+\|tail	phage tail assembly protein	NA	NA	NA	NA
AYP83488.1\|4329220_4329349_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
AYP83489.1\|4329445_4331800_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	3.4e-65	30.5
AYP83490.1\|4331799_4332753_+	chemotaxis protein	A4JWL1	Burkholderia_virus	7.9e-37	51.5
AYP83491.1\|4332752_4332962_+	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
AYP83492.1\|4332949_4333993_+	phage late control D family protein	A4JWL3	Burkholderia_virus	1.5e-76	45.6
AYP83493.1\|4334002_4334725_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
AYP83494.1\|4334733_4334976_+	hypothetical protein	NA	NA	NA	NA
AYP83495.1\|4335051_4335414_+	GtrA family protein	U5P0S6	Shigella_phage	9.6e-44	70.8
AYP83496.1\|4335410_4336340_+	glycosyltransferase	S5FKN0	Shigella_phage	6.7e-150	83.8
AYP83497.1\|4336339_4337887_+	hypothetical protein	B9UDL6	Salmonella_phage	5.0e-49	30.4
AYP83498.1\|4338050_4338410_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
AYP83499.1\|4338400_4339516_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	3.1e-101	52.7
AYP83500.1\|4339508_4340141_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
AYP83501.1\|4340143_4341802_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	8.0e-53	52.7
AYP83502.1\|4341808_4342423_+	DUF4376 domain-containing protein	NA	NA	NA	NA
AYP83503.1\|4342419_4342875_+	hypothetical protein	NA	NA	NA	NA
AYP83988.1\|4343251_4343668_+	serine acetyltransferase	NA	NA	NA	NA
AYP83504.1\|4344246_4344975_+	hypothetical protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP033343

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection