CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033055	Serratia sp. 3ACOL1 chromosome, complete genome	4 crisprs	csa3,cas3,WYL,cas14j,DEDDh,DinG,RT	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP033055_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033055_1

211090-211244

Orphan

Consensus_repeat	Method
ATGGGTGATCATCGAAATCGATCTGTTTCCATAGGGAAAGGGAGCTGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033055_1

>merge|CP033055|1|211090-211244|CRISPRCasFinder
ATGGGTGATCATCGAAATCGATCTGTTTCCATAGGGAAAGGGAGCTGCCCCGAGTGCATGGCTAGCCCGTGCAGCTTCGGAAAGTGTGGTGCAAAAAGAAGGTGGATGGGTGATCATCGAAATCGATCTGTTTCCATAGGGAGAGGGAGCTGCCC

>CP033055|1|1|211090-211244|CRISPRCasFinder
ATGGGTGATCATCGAAATCGATCTGTTTCCATAGGGAAAGGGAGCTGCCC	CGAGTGCATGGCTAGCCCGTGCAGCTTCGGAAAGTGTGGTGCAAAAAGAAGGTGG
ATGGGTGATCATCGAAATCGATCTGTTTCCATAGGGAGAGGGAGCTGCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP033055.1\|AYM89265.1\|207588_209136_-\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
CP033055.1\|AYM89267.1\|210028_210634_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
CP033055.1\|AYM89271.1\|214287_214926_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP033055.1\|AYM89259.1\|199735_201460_+\|polymerase	unknown	unknown	gnl\|CDD\|225844
CP033055.1\|AYM89260.1\|201619_201817_+\|hypothetical-protein	unknown	unknown	unknown
CP033055.1\|AYM89258.1\|198981_199590_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|99777
CP033055.1\|AYM89273.1\|216867_218301_+\|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit	unknown	unknown	gnl\|CDD\|236854
CP033055.1\|AYM89263.1\|204498_206049_-\|xanthine-permease	unknown	unknown	gnl\|CDD\|225161
CP033055.1\|AYM89274.1\|218343_218913_+\|cytochrome-c-nitrite-reductase-pentaheme-subunit	unknown	unknown	gnl\|CDD\|183264
CP033055.1\|AYM89272.1\|215101_216484_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|280446
CP033055.1\|AYM89261.1\|201866_203261_-\|deaminase	unknown	unknown	gnl\|CDD\|235873
CP033055.1\|AYM89275.1\|218909_219581_+\|cytochrome-c-nitrite-reductase-Fe-S-protein	unknown	unknown	gnl\|CDD\|274451
CP033055.1\|AYM89270.1\|213489_214284_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	unknown
CP033055.1\|AYM89268.1\|211521_212451_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182237
CP033055.1\|AYM89266.1\|209095_209989_-\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
CP033055.1\|AYM89262.1\|203274_204225_-\|carbamate-kinase-family-protein	unknown	unknown	gnl\|CDD\|183464
CP033055.1\|AYM89276.1\|219577_220525_+\|cytochrome-c-nitrite-reductase-subunit-NrfD	unknown	unknown	gnl\|CDD\|274450
CP033055.1\|AYM89277.1\|220556_222254_+\|heme-lyase-NrfEFG-subunit-NrfE	unknown	unknown	gnl\|CDD\|236675
CP033055.1\|AYM89264.1\|206170_207589_-\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
CP033055.1\|AYM89269.1\|212615_213389_-\|MipA/OmpV-family-protein	unknown	unknown	gnl\|CDD\|226236

Protein	Function_ID	Function_description	E-value
CP033055.1\|AYM89265.1\|207588_209136_-\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	2.83871e-155
CP033055.1\|AYM89267.1\|210028_210634_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	9.68146e-20
CP033055.1\|AYM89269.1\|212615_213389_-\|MipA/OmpV-family-protein	gnl\|CDD\|226236	COG3713, OmpV, Outer membrane protein V [Cell envelope biogenesis, outer membrane].	5.61059e-50
CP033055.1\|AYM89271.1\|214287_214926_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.83651e-17
CP033055.1\|AYM89258.1\|198981_199590_+\|DNA-binding-response-regulator	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	1.40558e-11
CP033055.1\|AYM89273.1\|216867_218301_+\|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit	gnl\|CDD\|236854	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase.	0
CP033055.1\|AYM89263.1\|204498_206049_-\|xanthine-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.96892e-06
CP033055.1\|AYM89274.1\|218343_218913_+\|cytochrome-c-nitrite-reductase-pentaheme-subunit	gnl\|CDD\|183264	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional.	2.34315e-88
CP033055.1\|AYM89261.1\|201866_203261_-\|deaminase	gnl\|CDD\|235873	PRK06846, PRK06846, putative deaminase; Validated.	0
CP033055.1\|AYM89275.1\|218909_219581_+\|cytochrome-c-nitrite-reductase-Fe-S-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.77386e-135
CP033055.1\|AYM89272.1\|215101_216484_-\|IS4-family-transposase	gnl\|CDD\|280446	pfam02281, Dimer_Tnp_Tn5, Transposase Tn5 dimerization domain. Transposons are mobile DNA sequences capable of replication and insertion into the chromosome. Typically transposons code for the transposase enzyme, which catalyzes insertion, found between terminal inverted repeats. Tn5 has a unique method of self- regulation in which a truncated version of the transposase enzyme acts as an inhibitor. The catalytic domain of the Tn5 transposon is found in pfam01609. This domain mediates dimerization in the known structure.	1.00108e-17
CP033055.1\|AYM89268.1\|211521_212451_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182237	PRK10094, PRK10094, HTH-type transcriptional activator AllS.	2.22548e-81
CP033055.1\|AYM89266.1\|209095_209989_-\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	1.77132e-31
CP033055.1\|AYM89262.1\|203274_204225_-\|carbamate-kinase-family-protein	gnl\|CDD\|183464	PRK12352, PRK12352, putative carbamate kinase; Reviewed.	0
CP033055.1\|AYM89276.1\|219577_220525_+\|cytochrome-c-nitrite-reductase-subunit-NrfD	gnl\|CDD\|274450	TIGR03148, cyt_nit_nrfD, cytochrome c nitrite reductase, NrfD subunit. Members of this protein family are NrfD, a highly hydrophobic protein encoded in the nrf operon, which encodes cytochrome c nitrite reductase. This multiple heme-containing enzyme can reduce nitrite to ammonia. Members belong to a broader Pfam protein family, pfam03916, which also contains an NrfD-related subunit of polysulphide reductase. [Energy metabolism, Electron transport].	5.27456e-147
CP033055.1\|AYM89277.1\|220556_222254_+\|heme-lyase-NrfEFG-subunit-NrfE	gnl\|CDD\|236675	PRK10369, PRK10369, heme lyase subunit NrfE; Provisional.	0
CP033055.1\|AYM89264.1\|206170_207589_-\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	7.14305e-117
CP033055.1\|AYM89259.1\|199735_201460_+\|polymerase	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	3.57982e-15

>CP033055.1|AYM89267.1|210028_210634_-|ankyrin-repeat-domain-containing-protein
MSDKALITEFLFAAEQGDSDALKSCLTQGADINATNRQGRTAITLASLNKHYDCVELLIAAGADIDKQDQTCFNPFLLSCLNNDLTLLRLVLPANPDLDRLTRFGGVGITPASEKGHVDIVRELLTRTEINVNHTNFVGWTPLLEAIVLNDGSAKQQEIVKLLLEHGANPHMTDKYGKSPLTLAREKGYHEIAELLVAAGA
>CP033055.1|AYM89266.1|209095_209989_-|DUF2877-domain-containing-protein
MTALSAEVAFPRQQLSGQVEQVFSRAVNLFVPEQNMLYTLLSDEYDNAPNSCRIALRHCDQILSPGDRVEFSQGGIKIGKHCWIDFSHCQIWQQPDLYLTEASRASIAWRQWGACINQQASSGNSLFNYRGDNIFYREMARLLQLHRDALFLAIRRNEDPDEAIHSLIGLGIGLTPSGDDYLVGLCSILLLPGHPAQKYREVFLAVLEKAQHKTTLLSAITLEAAINQRYRQVISHLLEKLIHDDRHLIIDTINKIKQIGSSSGCDMLYGMADACLLTSYFGEKYVHQDSGKKQHLV
>CP033055.1|AYM89265.1|207588_209136_-|acyl-CoA-synthetase-FdrA
MSIRIVVKNNTWFDSVSLMSISTKANKLEGVEQAFVAMATEMNKGVLENLGLLTPELEAAKNGDLMIVIKGASDEANEATLQAIEALFTHKDKGGRHEARYATLASAKTHIPESNLAVISVNGLYAAREARQALENDLNVMLFSDNVSIEDELALKQLAHEKGLLMMGPDCGTAIINGTALCFGNAVRRGNIGIIGASGTGSQELSVRIHEFGGGISQLIGTGGRDLSEKIGGRMMLDAIAMLENDNGTEVIVLVSKPPAPAVAHTVLERARACRKPVVVCFLGRNEPPADEQGLQFARATKQAALKAVLLTGIKEESLDLHPLNWPLIEEVRAKLTPQQKYIRGLFCGGTLCDEAMFAALEKYDDVYSNIQPDPAMRLQDLNRSVAHTFLDFGDDDFTNGKPHPMIDPTNRIQRLLQEARDPEVGVIVMDFVLGFGSHEDPVGVMIEAITEAKAIAASESRPLEILGYVLGTDLDTPSLQQQCQMLTDAGVIWASSSTNTGLLAREFVCKGGKA
>CP033055.1|AYM89264.1|206170_207589_-|DUF1116-domain-containing-protein
MSHSLFNQPLNVINVGIAMFSDDLKKQHVPVTQLDWTPPGQGNMAVVEALDQIASPALAEKVAAANKLALERIIQSHPVLVGYDQAINVVPGMTRNTILHAGPPITWQKMCGGMKGAVTGALVFEGLAANLDEAAELAASGEIIFSPCHEHDCVGSMAGVTSASMFMHIVENKTYGNRAYTNMSEQMAKILRMGANDQSVIDRLNWMRDVQGPMLRDAMKLAGEIDLRLMLAQALHMGDECHNRNNAGTTLLIQALTPWIIQAGYPVEQQREVFDFVASSDYFSGPTWMAMCKAAMDAAHGIEYSTVVTTMARNGVEFGLRISGLPGQWFTGPAQQVIGPMFAGYKPEDSGLDIGDSAITETYGIGGFAMATAPAIVALVGGTVDEAIDFSRQMREITLGENPNVTIPLLSFMGIPTAIDITKVGSSGILPVINTAIAHKDAGIGMIGAGIVHPPFTCFEKAILSYRDHYCQ
>CP033055.1|AYM89263.1|204498_206049_-|xanthine-permease
MNKMKLEWKRGDWAAYFGLMTNNLTNLLTMMGLLIFVVGIPKEIVYGRIAPAFGLAVMMASICYTWFGLQMARQTGRSDVTALPSGPSAPSIFTVTFLVLMPVYQSTGDADFAIAIGLVWCFVEALILVGGSFLGETIRKMIPRTVLLSCLSGLGLLLLAMNPMLQAFEAPTVSFIVLLLIFINWFGKKPIFARIPTGLLLLIAGTALAWISGLQSPDAIKASMSSFGFNPPGFHVDSFMQGLPHALPYLASAVPLGLANYIFDLENIESAHAAGDEYNTRKVMMANGLSSMFGCLLGNPFPVTVYVGHAGWKAMGASIGYTLASGVTMFLVPLFGLGAFMLAVIPMTAIVPILVFIGVVTANQVVRETPKIEVPVIFICLFPWIANWGLTMVNSVLGAAGTSGAKLGAELLHSKGVYYQGLVHLGSGAPLASMLWGCVAIFAIINKPLRGAVAAATGALLALFGVIHAPAVGFAEGSSLLFTLAYLMMAAMFVLKHFLDSRETVAAAVQEPTKTA
>CP033055.1|AYM89262.1|203274_204225_-|carbamate-kinase-family-protein
MKELVVVAIGGNSIIKDNASQTVEHQTEAVKKVADSVLEMLASDYHIVLTHGNGPQVGLELRRAEVAHEHEGLPLTPLANCVADTQGGIGYLIQQALNNRLAQHGGQKAVTVITQVEVDKQDPGFTNPTKPIGAFFSEQQRDALLQQYPTWRFVEDSGRGYRRVVASPEPIRIVEADAIKALTQQGFVVIGAGGGGIPVARNSQGDYQSVDAVIDKDLSTALLAREIRADVLVITTGVEKVCIHFGKPNQQALGQVNVAEMTRYMAEGHFPAGSMLPKIVASLAFLRDGGKRVVITSPDCLPAALRGETGTHIVNL
>CP033055.1|AYM89261.1|201866_203261_-|deaminase
MNENKSRREFLSHSGKVAAACALLGATSSVGYAANPATASCEADQRMKITDPHYYLDNVLLEAGFEFDGATPVSTRTELKTLEINQGKIVALRDNRQHADSTLPVYDAGGKLMLPAMRDMHIHLDKTFYGGPWRSLNRPAGTTIKDMIRLEQKLLPELQPYTQERAEKLIDLIQSYGSTTARSHCNVEPTSGLKNLENLQEVLARRKSGFDCEIVAFPQHGLLYSKSEPLMREAMQAGAHYVGGLDPTNVDGAMEKSLDSMFQIALDYNKGVDIHLHETSPAGIAAVNYMVATVEKTPQLKGKLTISHAFALAMMNEQQVDEIATRMAAQQITIATTVPIGTMHMPLSQLREKGVYLMTGTDSVIDHWSPYGLGDMLEKANLYAQLYVRPNEGTLSRSLALATGDVLPLNDKGERVWPKAQDDASFVLVDASCSAEAVARISPRTATFHKGEMVWGRVGQGSKA
>CP033055.1|AYM89260.1|201619_201817_+|hypothetical-protein
MFDIISDLASVVFRIIFGILEAIYEIVNCIYSFTKGRRRIRVLITVLVFLVLLGLFYWWIVNASQ
>CP033055.1|AYM89259.1|199735_201460_+|polymerase
MRHPQSPLPLASPMGLSLLPLGLLMIWLILLSPLALPNMGGSGLKLPQNILTWAVMAVVTATLWLTLPANSPISLSVTARWLLLAVVILAIPLLYTSPQWQSAGLARWLGLAGGWVFYVSWMQYRPPHFARHWLFYAILLAAVFQGVIALLQLTLPGTVPAWFDYPMKNGRPYGVFLQVNVLASFIACGLALALMLLLLPDFSLTLPKAERGRRYALGLVLVLFPALLVWLQSRIGWLGGGISGALLLWLGWRQAKKLTGIATGLMLVGITIALTFQINGGVETVEHAASNQARLIMLQDSLKMIVEKPWLGWGYGGFEYAFQHYRLAAGLSTLGLGVVRHPHNEILLWWVEGGIAALAGMAILLCAGFRLLRLSWRKKGVSLALAIALLPLLLHSQTEYPFVLSSAHWAIFLLLLAQWDRQTDKAIERTTFPLITPSFLRTVVPMASAAIGIVASIGLYANFSLTAVERNHFADIQPARRAMAFDPWVNTERWHYDQQTHALLMYNQTRDPRLLENYAQWAQGYLARRIDKNVYASWLAIAQYQQDTATYRRLHQEAKALFPSDPRFLTNLPE
>CP033055.1|AYM89258.1|198981_199590_+|DNA-binding-response-regulator
MAASAKIIKVLIIDKDNYFIAGLRRIISDFYRSKDISVQFIVRHVAGFSADIIFQTFDYGARFNVWRSLPSGAPSPLVFLIRDQRNSLLSHLFQSVRKSGTLYRNQPIDVLKSMLEEAISMQGFLPPKKMLDTQGFTLRESEVLRYLRQGKSHEETANVMRLHVKTISGYKRSAMRKLNFKRNQELFHWLLQGGLSSLERKM
>CP033055.1|AYM89268.1|211521_212451_+|LysR-family-transcriptional-regulator
MNSIFTEENLLAFTTTARFGSFSKAAKELDLTTSAISYTIKRMETGLDVVLFNRSTRSIELTESGFYFYRKATDLLNDFHAIKRGIDTISQGIEARVRICINQLLYTPRHTARLLQVLKKQFPTCHITVTTEVYNGVWDSIINNQANIAIGAPDTLLDGGGIDYTEIGAIRWVFAIAPDHPLAFMPEPISESQLRLYPNIMVEDTAHTINKKVGWLLHGQEAILVPDFNTKCQCQILGEGIGFLPEYMAREPVTEGLLATRAIHNPRQDSSMLLATQHAATGQVTQWIKKQFAPGGVLTGIYGDLLYRE
>CP033055.1|AYM89269.1|212615_213389_-|MipA/OmpV-family-protein
MMEYNFISVRKPRLSVNALSLTAILLTGNTYAGDWSVGAGVLAEQLPYRDYDAQYIPLPIVTYQGEQFFINSQGIGINLLSFEKHNLHLAVNHSPLSFKPADSDDPAMKKLDKRRATAMAGIGYQYHADWGSLNADIATDVLGYSDGVIADVGYQYRFQFGKFQLVPGFGMRWQNRTFNNYYFGISEPESQRSGMQQYRAKSGVTSYISLASYYAINNDWQLFLMGFNEQMSDTVKDSPMTDRDYSINAVAGVLYSF
>CP033055.1|AYM89270.1|213489_214284_-|CPBP-family-intramembrane-metalloprotease
MIPVIRYSPLRFFGLVFAFSWLPWAIAAYLSHSPDRQQSTLFVALLGLLGPALATGVMIWTAKDRRLWGDIRSRVFSLAGITLGRTLTLLGLILLPLLMAIWLSVRLGLDTTQFAFSSGFLPMLPLALIASILEELGWRGYGVDSLRGRWPMLLPTSLIFFGLWALWHLPLFFIADTYQHQLWQAGGIYVTNFFISMFPAAVLANWFYYRCQRSIPAAILFHLTLVMAAELMQVAPLTKCIWTALLLLIATLLIAIEQELFFKE
>CP033055.1|AYM89271.1|214287_214926_-|TetR/AcrR-family-transcriptional-regulator
MVRTVKTPEVRRAEILQAASELFQEIGYESTSVDSIVRSAGIAKGTFYYYFKSKDEVLAALAQQLCAEMVARSQIIADDPQLGAIEKFCAIIAAQNQTVEAGQALVEDLHRPENRALHERSNIETVLAFGPILAAVVEQGNQESVFQVDDPLSTVQFILAGSLFLFGHQMFSWTPEEQAARMQAMLLLIERAFGAVAGSFATVLGASIQGEE
>CP033055.1|AYM89272.1|215101_216484_-|IS4-family-transposase
MVLSDCYSWANDTFGLAQLGDYRRTLRLVHLTASLAKKTGLSIVKSSQTTAEVEGAYRLIRNPNVSPDAIAEAGFNATAKAAQTHTLLLALEDTTSINFAHTTAYDELGNTTTSKNTHGLLAHSVLLYAPDTAQFLGLIDQYRWTREANEYGKKHQRKQVPYEEKESYKWQQASERTAQRLGDAQPQVISVCDREADIWHYLDYKTKNQQRFVVRAAQNRLLSEQSKRLLELPETLVEAGSYVLNVVQKGGRAARDARMSIRYSPVELKMPGSTSEENTVPLTYICCREEEAEDGACWHLLTSEKVTSGEEARVIISYYERRWLIEEYHKAWKSGGTQVEQLRMQTRDNLERMIVILSFIAVRVLALRQGGLSEETLNESCERVLSPLEWKLLWVKQERKPLPKKPPSLKWAYLNLAKLGRWYDSKRTGRAGWIVMWEAWFKLQDIVEGYKLAKSLDQEI
>CP033055.1|AYM89273.1|216867_218301_+|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit
MYKVSKLLMLFLAGMYAVFLSFSAQAEATPAATPQKVEAKNETFSAPHPDQYKSWQATSEQSDRVDALAGDPRLVILWAGYPFAKDYNKPRGHAYAITDIRESLRTGAPKTAEDGPLPMACWSCKSPDVARVIAEQGEAAYFHGKWARGGPEIVNNLGCADCHNTASADFSAGKPALHLSRPYAARAMETIGKPFDKAGRFDQQSMVCGQCHVEYYFDGKDKAVKFPWDKGTTVDDMEVYYDNIEFSDWTNPLSKTPMLKAQHPEYETWSAGIHGKNNVTCIDCHMPKVQNAEGKIYTDHKIGNPFDNFEQTCKNCHTQDKASMQAVVEKRKQDINEIKLKVEDQLVHAHFEAKAAWDAGATEAEMKPILTHIRHAQWRWDFSIASHGIQMHAPEVALRILGTALDQAAQARTQLIRLLATKGITTEVKLPDISTKEKAQLALGMDMPQLNAEKQEFLKTVVPQWEEQARKTGLLGK
>CP033055.1|AYM89274.1|218343_218913_+|cytochrome-c-nitrite-reductase-pentaheme-subunit
MSVLRSLLTTGVLACSLWLTVLPVSAQTDSPAVQQQSAEVTLQRNPDEACLRCHKLQQNAMHGKHAGAINPNNKLPLTCTNCHGSPSLHHREGVKDVMRFNEPMFGVEQQNSVCMSCHLPETLQKAFWPHDVHLAKVSCASCHTLHPQQDKVQGLNDKGRIKLCVDCHRQQQDDPAFNPASVRLDKGQP
>CP033055.1|AYM89275.1|218909_219581_+|cytochrome-c-nitrite-reductase-Fe-S-protein
MSCSRRRFIVGIGVLAAGSTLTEKLLARTMNVNGIRYGMIHDESRCIGCTACIDACREVNQVPVGVSRLEIVRSEPIGQFPDVKYRFFRHSCQHCDDAPCVHVCPTGASFIDASSGIVDVNPDLCVGCQYCIAACPYRVRFIHPVSKTADKCDFCRKTNLRQGKQPACVLSCPTKALTFGNLDDPHSDISRLLQQKTTYRYKIALGTRPKMYRVPFKYGETSQ
>CP033055.1|AYM89276.1|219577_220525_+|cytochrome-c-nitrite-reductase-subunit-NrfD
MTSAFHFDSLVWDWPIAIYLFLIGISAGLVTLAILLRRYHPEEGASNSRVMLTTLFVAPTSVMLGLVILIFHLTRPWTFWKLMFHYSVTSVMSMGVMLFQVYMVVLVVWLALIFRDEVAALQQRWLPKFAVIPRLLQRLLPLLRPIETVMLVLAVLLGAYTGFLLSALKSYPMLNNPLLPVLFLFSGVSSGIAVALLVAAFGPKGHLHSREVHFLHRLETPVVWLEIFLLAAFFIGLWLGDDGKLRALSAALGGGFWSWWFWLGVVGCGLIMPLLLKALGWGKARFHILLISGASLCGVLLLRYFILYAGQMTVA
>CP033055.1|AYM89277.1|220556_222254_+|heme-lyase-NrfEFG-subunit-NrfE
MLWLPELGFIALLLACTASLLLAGITLLTLMDRRWGGLLPARGWSLSIFVLIALSFAILLQLFLSNDFSVMYVAQHGHSQLPPLMKAGALWGGHEGSLLLWLLCLAGWSACFALFSPKSVRSLQPLTLAILALIVGCFLLFILFFSDPFVRIFPAAVQGRDLNPMLQHIGLILHPPLLYLGYAGFATCSALMLAASLRGEFSAEIAGQCLRWAKPAWCFLTAGIILGSWWAYSELGWGGWWFWDPVENASLLPWLTATALLHSSAVGQRTGGLRHWSLLLTLGTFVLSLLGTLIVRSGILVSVHAFALDEQRALPLFILFAFLSGSSFLIYALRANREKAVTSPVKPALLGALLLLSSAALIVLVGTLYPMLYRMMGWGQISVGAPYFNLVLLPFGLLGLVLMCYGGFRRRRYGQWIAHAGVLLTALGIASSALQRHEISLNVTVGETVSLAGYQFTLRSVDLQAQANFTSEQAVIEVTQQGKPVAQLTPERRFYTARRQQMFEPGIDWNAFHDWYVVMGEKSGEQRYAMRFYVQTGIRWIWWGGALMMIGVLATGWQRRQACAG

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Crispr_ID: CP033055_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033055_2

1002095-1002194

Orphan

Consensus_repeat	Method
GGCACCGAATCAGCTCCCTCTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033055_2

>merge|CP033055|2|1002095-1002194|CRISPRCasFinder
GGCACCGAATCAGCTCCCTCTCCTTGGGGAGAGGGTTGGGGTGAGGGAGACAAAGATTGATCGCGATAGCTGACCAAGGCACCGAATTAGCTCCCTCTCC

>CP033055|2|2|1002095-1002194|CRISPRCasFinder
GGCACCGAATCAGCTCCCTCTCC	TTGGGGAGAGGGTTGGGGTGAGGGAGACAAAGATTGATCGCGATAGCTGACCAA
GGCACCGAATTAGCTCCCTCTCC

Protein	Signature genes	Signature genes Name	Protein_function
CP033055.1\|AYM89921.1\|1010580_1011126_+\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	unknown	unknown	gnl\|CDD\|235612
CP033055.1\|AYM89923.1\|1012500_1013559_+\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234636
CP033055.1\|AYM89917.1\|1005448_1006198_+\|hypothetical-protein	unknown	unknown	unknown
CP033055.1\|AYM89918.1\|1006388_1007462_-\|threonine-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|181212
CP033055.1\|AYM89910.1\|998217_998559_+\|hydrogenase-maturation-nickel-metallochaperone-HypA	unknown	unknown	gnl\|CDD\|183485
CP033055.1\|AYM89920.1\|1009042_1010584_+\|cobyric-acid-synthase	unknown	unknown	gnl\|CDD\|234838
CP033055.1\|AYM89911.1\|998578_999544_+\|hydrogenase-nickel-incorporation-protein-HypB	unknown	unknown	gnl\|CDD\|182479
CP033055.1\|AYM89922.1\|1011122_1011869_+\|adenosylcobinamide-GDP-ribazoletransferase	unknown	unknown	gnl\|CDD\|234697
CP033055.1\|AYM89906.1\|994370_995570_+\|Ni/Fe-hydrogenase-cytochrome-b-subunit	unknown	unknown	gnl\|CDD\|236785
CP033055.1\|AYM89916.1\|1004646_1005237_+\|urease-accessory-protein-UreJ	unknown	unknown	gnl\|CDD\|368209
CP033055.1\|AYM89907.1\|995547_997242_+\|hydrogenase-2-large-subunit	unknown	unknown	gnl\|CDD\|182482
CP033055.1\|AYM89914.1\|1000920_1001949_+\|hydrogenase-expression/formation-protein-HypE	unknown	unknown	gnl\|CDD\|100033
CP033055.1\|AYM89909.1\|997725_998211_+\|hydrogenase-2-assembly-chaperone	unknown	unknown	gnl\|CDD\|182480
CP033055.1\|AYM89905.1\|993373_994384_+\|hydrogenase-2-operon-protein-HybA	unknown	unknown	gnl\|CDD\|236786
CP033055.1\|AYM93886.1\|1011878_1012496_+\|adenosylcobalamin/alpha-ribazole-phosphatase	unknown	unknown	gnl\|CDD\|184966
CP033055.1\|AYM89912.1\|999543_999819_+\|hydrogenase-maturation-factor-HybG	unknown	unknown	gnl\|CDD\|182438
CP033055.1\|AYM89915.1\|1002249_1004586_+\|carbamoyltransferase-HypF	unknown	unknown	gnl\|CDD\|223146
CP033055.1\|AYM89908.1\|997241_997742_+\|HyaD/HybD-family-hydrogenase-maturation-endopeptidase	unknown	unknown	gnl\|CDD\|182481
CP033055.1\|AYM89913.1\|999805_1000921_+\|hydrogenase-formation-protein-HypD	unknown	unknown	gnl\|CDD\|237892
CP033055.1\|AYM89919.1\|1008036_1008993_+\|cobalamin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|234919

Protein	Function_ID	Function_description	E-value
CP033055.1\|AYM89921.1\|1010580_1011126_+\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	gnl\|CDD\|235612	PRK05800, cobU, adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated.	1.00791e-88
CP033055.1\|AYM89923.1\|1012500_1013559_+\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	gnl\|CDD\|234636	PRK00105, cobT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed.	8.01337e-153
CP033055.1\|AYM89918.1\|1006388_1007462_-\|threonine-phosphate-decarboxylase	gnl\|CDD\|181212	PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional.	0
CP033055.1\|AYM89910.1\|998217_998559_+\|hydrogenase-maturation-nickel-metallochaperone-HypA	gnl\|CDD\|183485	PRK12380, PRK12380, hydrogenase/urease nickel incorporation protein.	6.82996e-56
CP033055.1\|AYM89920.1\|1009042_1010584_+\|cobyric-acid-synthase	gnl\|CDD\|234838	PRK00784, PRK00784, cobyric acid synthase.	0
CP033055.1\|AYM89911.1\|998578_999544_+\|hydrogenase-nickel-incorporation-protein-HypB	gnl\|CDD\|182479	PRK10463, PRK10463, hydrogenase nickel incorporation protein HypB; Provisional.	4.6805e-176
CP033055.1\|AYM89922.1\|1011122_1011869_+\|adenosylcobinamide-GDP-ribazoletransferase	gnl\|CDD\|234697	PRK00235, cobS, cobalamin synthase; Reviewed.	8.33841e-66
CP033055.1\|AYM89906.1\|994370_995570_+\|Ni/Fe-hydrogenase-cytochrome-b-subunit	gnl\|CDD\|236785	PRK10881, PRK10881, Ni/Fe-hydrogenase cytochrome b subunit.	0
CP033055.1\|AYM89916.1\|1004646_1005237_+\|urease-accessory-protein-UreJ	gnl\|CDD\|368209	pfam04955, HupE_UreJ, HupE / UreJ protein. This family of proteins are hydrogenase / urease accessory proteins. The alignment contains many conserved histidines that are likely to be involved in nickel binding. The members usually have five membrane-spanning regions.	1.09652e-31
CP033055.1\|AYM89907.1\|995547_997242_+\|hydrogenase-2-large-subunit	gnl\|CDD\|182482	PRK10467, PRK10467, hydrogenase 2 large subunit; Provisional.	0
CP033055.1\|AYM89914.1\|1000920_1001949_+\|hydrogenase-expression/formation-protein-HypE	gnl\|CDD\|100033	cd02197, HypE, HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.	6.26841e-166
CP033055.1\|AYM89909.1\|997725_998211_+\|hydrogenase-2-assembly-chaperone	gnl\|CDD\|182480	PRK10465, PRK10465, hydrogenase-2 assembly chaperone.	6.92707e-83
CP033055.1\|AYM89905.1\|993373_994384_+\|hydrogenase-2-operon-protein-HybA	gnl\|CDD\|236786	PRK10882, PRK10882, hydrogenase 2 operon protein HybA.	0
CP033055.1\|AYM93886.1\|1011878_1012496_+\|adenosylcobalamin/alpha-ribazole-phosphatase	gnl\|CDD\|184966	PRK15004, PRK15004, adenosylcobalamin/alpha-ribazole phosphatase.	2.31219e-99
CP033055.1\|AYM89912.1\|999543_999819_+\|hydrogenase-maturation-factor-HybG	gnl\|CDD\|182438	PRK10413, PRK10413, hydrogenase maturation factor HybG.	1.01838e-38
CP033055.1\|AYM89915.1\|1002249_1004586_+\|carbamoyltransferase-HypF	gnl\|CDD\|223146	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	0
CP033055.1\|AYM89908.1\|997241_997742_+\|HyaD/HybD-family-hydrogenase-maturation-endopeptidase	gnl\|CDD\|182481	PRK10466, hybD, HyaD/HybD family hydrogenase maturation endopeptidase.	3.84483e-90
CP033055.1\|AYM89913.1\|999805_1000921_+\|hydrogenase-formation-protein-HypD	gnl\|CDD\|237892	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional.	0
CP033055.1\|AYM89919.1\|1008036_1008993_+\|cobalamin-biosynthesis-protein	gnl\|CDD\|234919	PRK01209, cobD, cobalamin biosynthesis protein.	5.65148e-149

>CP033055.1|AYM89914.1|1000920_1001949_+|hydrogenase-expression/formation-protein-HypE
MREENNGREITLAHGSGGRAMQSLIEELMLPAFANPALNAREDQARISLDELVTSGDRLAVSTDSYVIDPIFFPGGDIGKLAVCGTANDVAVSGAQPRYLSCAMILEEGLPYATLERIVQSMASTAQQAGIQIVTGDTKVVPRGAADKIFINTTGLGTIPAGVQWGAANIRLGDSIIVSGTLGDHGATILNLREGLGLESELSSDCALLAPLIAPLLPIAGVRALRDATRGGVTAVLHEFAAASGCGMAISEAALPLKPAVRGICELLGLDALNFANEGKLVLVVAAEAEAEVLAALHSHPLGRDAAVIGHTTERQQVSLTGLFGVSRRLDLPLDEPLPRIC
>CP033055.1|AYM89913.1|999805_1000921_+|hydrogenase-formation-protein-HypD
MRYVDEFRDPALCQALLRRIETLMLAIPQSQRLPLQVMEVCGGHTHAIFKFGLDQLLPDSLEFVHGPGCPVCVLPMGRIDSCLEIAAHPEVIFCTYGDAMRVPGRNGSLLDARRRGADIRVVYSPLDALQLAADNPQREVVFFGLGFETTMPASALTLQQARQRQLKNFTLFCQHITLIPTLRSLLQQPDVRIDGFLAPGHVSMVIGNAPYQFIAADYHKPLVVTGFEPLDILQGLVMLLEQLRDGRRAVENQYRRIVPEQGNLLAQRAMAEVFGLKESSEWRGLGEIAHSGVQIKPEYADFDAELRFKPQAQRVADDPRSRCGEVLTGRCKPDACPLFGKQCTPENAFGALMVSSEGACSAYYQYRRENA
>CP033055.1|AYM89912.1|999543_999819_+|hydrogenase-maturation-factor-HybG
MCLGVPGKVTAVGEDIHQLAWADVCGVAVRINIALVCEGSPQELIGQWVLVHVGFAMSLLDEQEALETLAALQHMRAVGLARDDEDANALR
>CP033055.1|AYM89911.1|998578_999544_+|hydrogenase-nickel-incorporation-protein-HypB
MCTTCGCASGEKTIEGDEHHHHDDHHHHDHHDAHHHHPDHHHHHDGEHQAPAGVVIHHHHHYYHQGDVHHHYAGVAAAERFTPEVQPHSQDLHYGHGEAGSHAPGIGQRRLVQIEQDVLSKNNHLAAHNREHFSAQHILVLNLVSSPGSGKTTLLTATLERLAGKLPCAVIEGDQQTTNDAERIRATGVPAIQVNTGKGCHLDAQMVHDAAHRLDLQDHSLLFIENVGNLVCPASFDLGERHKVAVLSVTEGEDKPLKYPHMFAAATLMIINKIDLLPYVNFSVEKCIEFARQVNPSIQVISLSATSGEGMDLWLNWLGEQ
>CP033055.1|AYM89910.1|998217_998559_+|hydrogenase-maturation-nickel-metallochaperone-HypA
MHEISLCLSTMELIEQQARQHGAKRVTAVWLEIGALSCIEEHALRFSFASASRNTLAEGCQLLLDYQPARAWCWSCSMSVQIEKHDEGCPQCGSHQLRVESGDSLRLKQLEVE
>CP033055.1|AYM89909.1|997725_998211_+|hydrogenase-2-assembly-chaperone
MQTVTNGFQLNPSARLETAFQAIADGEMQGLPFFQPQIPVRACGFQLFERQWVGTILTPWMLSLLVLPGPEQVWQPYAVGDKLALSLPCGSVRFIVGEIAGCGQYLACSLMSPLDRHLGAEQALALAQQSAQMALSLPVADGNIPSNPGRRALFGLSQRTA
>CP033055.1|AYM89908.1|997241_997742_+|HyaD/HybD-family-hydrogenase-maturation-endopeptidase
MRILVLGIGNLLLGDEAVGVRIVEALEQRYRLPAHVEVLDGGTSGMELMEMMADRDHLIVADAVLTGAAPGSVAVLYDEEIPALFTRKVSPHQLGLSDVLMALRLTDEFPRRLTLVGVVPESLEPGIGLTAVVSQAIEPALAQVLLALQESGVVAEPKEVANADCD
>CP033055.1|AYM89907.1|995547_997242_+|hydrogenase-2-large-subunit
MSQRITIDPVTRIEGHLRIDCEIEDGKVVKAWSSGTMWRGMEEILQGNDPRDAWMIVQRICGVCTTIHALASVRTVENALGMEIPVNAQYIRNIIAAAHSIHDHIVHFYQLSALDWVDVTSALKADPQKAADLLSGLSSWPLNSVAEFTRVQQKIKDLVASGQLGIFANGYWGHPAMALPPEINLIAVAHYLQALECQRDANRVVAILGGKTPHIQNLAVGGVANPINLDAPSVLNLERLMYLKTFIDRLGDFIEQVYLVDSAVIAAHYPEWLTLGKGSDCYLCVPELPIDRKGDQFLMPGGYLENGKFRPIANQRDEYLIKGIQESGKHAWYQDDEPLAPWEGLTRPKYTGWQEDGKYSWVKAPTFYGKAVEMGPLAWLMCTLQAEHPPTQKYFAKVNSNYQALTGKALTADQLPSTLGRIVGRTVHACVLHETLGQQWQALVSNIGSGDHETFIPPNIPLTGEIRGVGFIEAPRGALSHWVVIKDGKIANYQAVVPSTWNAGPRNFNDEPGPYERSLVGTPVADPSKPLEVVRTIHSFDPCMSCAVHIVDTTGNEVTRVKVL
>CP033055.1|AYM89906.1|994370_995570_+|Ni/Fe-hydrogenase-cytochrome-b-subunit
MTTHKTQPLGGRLVSWPVMMLAPFVVLCLLLILKRLVLGLGDVSDLNGGYPWGIWIAFDLLVGTGLACGGWALAWAVYVFNRGEYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFYIPGHFNTSSVLFETAVCMTIYVGIVALEFAPALLERLGWKVSLKRLNKVMFLVIALGALLPTMHQSSMGSLMIAAGIKIHPLWQSYEMLPLFSLLTAGILGFSIVIFEGSLVQAGLRGKGPEETPLFARMTYIIDGFLLLFIVLRFGELIWRGKTDYLWHLDRFAISFWVETLLMLVPLVMFRWKRNRRNSRLLFLGALSMVCGASFWRLNYALLAYDPGNGYHYFPTASELLISIGFVAIEVCAYILLIRLLPVLPAHQHKNENNQLEVEHEPTHHH
>CP033055.1|AYM89905.1|993373_994384_+|hydrogenase-2-operon-protein-HybA
MNRRNFLKLTCGGAMLVGVAPAAQAGPENKQPIPNSLGMLYDSTLCVGCQACVSKCQRINHTDEPHGETYAYAGTEATWSNNDKLSPYTNNIIQVWTSGDGKHKDQVDNGYAYIKKQCMHCVDPNCVSVCPVQALHKDAKTGIVHYNPDVCTGCRYCMVGCPFNVPKYDYDNPFGKIHKCELCNQKGVARLDQGGLPGCVEVCPTGAVIFGTREQLMAEAKQRLAIKPGENYRYPRQTLQGNDHYEHPVPHYQPHLYGEHEGGGTQVLVLTGVPFEDLGLPALEELSTGARSEHIQHTLYKGMVLPFAALAGITFLVQRNQRNERQDKKEDKHDDA
>CP033055.1|AYM89915.1|1002249_1004586_+|carbamoyltransferase-HypF
MADFEPENIASSNGLRLRIKGKVQGVGFRPYVWLLARRFNLCGEVSNDGAGVIVQLWQSSAITDFLRVLPQECPPLARIDSVTSTPFYWPQQPASFTIASSGAGQVDTHIVADAATCDACLAELNSPHNRRYHYPFINCTHCGPRFTIIRRMPYDRPNTSMQPFPLCPQCLAEYQDPADRRFHAQPTACPECGPHLWLSDAAGQTTASADDALKLAALALIAGQIVAVKGIGGFHLACDATNSAAVQRLRARKHRPAKPLAVMMPDTHWLQQCVQVAEPTALLKLLRSPPAPIVLVMAHPQSPLCGEIAPGLNEIGVMLPANPLQHLLLQQVARPLVMTSGNPAGKPPALSNQQALDELAGVADVWLLHNREIVQRADDSLVRLTEQGSEMLRRARGYVPDAMPLPPGFTAQPAILALGADSKNTFCLLWDDRAVVSQHLGSLEDETTRQQQQRLLALFGEIYGVVPQAIAIDAHPGYLSQQQGLALANERTIPCVTTLHHHAHLVACLAEHGWPRDGGKVIGLALDGLGYGLGGQLWGGECLLVDYQHCEHLGGLPAVALPGGDVAARQPWRNLLAQLQRFVPDWQTLPEAASIPQPQVTILLRAVERQINSPLASSAGRLFDAVAAALQIVPPQISWEGEAACQLEALAWQSPPHQPPVSLPLLGNQLDLATFWRQWLAYQAPPAQRAYAFHFALAQGFAALARHATKQYGINTVVLSGGVMHNALLRQLLLQQLDGLQVLLPSRLPAGDGGLALGQALIAANRLIQGRHKDEFIT
>CP033055.1|AYM89916.1|1004646_1005237_+|urease-accessory-protein-UreJ
MRINVKAVAVSLLALFPMLAFAHVGHDGGAHHVLSFTEGFIHPLTGMDHLVAMVLVGIWSAMNTKQWWLAPLAFAGLLLTGALVGMAGVTVPGTEFIVAASLLGIGVMVALQLKLSAITGALIIGAFAIFHGLAHGSELSHSVAALSGMVIATALLHVAGLGIGYLLASSSTHSGWARVIGGGSSLLGIGLLSGVI
>CP033055.1|AYM89917.1|1005448_1006198_+|hypothetical-protein
MNRVIGLLALCLVSFSSLADCQPLLAELAKPFAAKTTMNTELSTCKVWPYAPEKTIAVLMLEPKEEAQPDFTDYDVAVLVVDSQTGKVLASKYHPKAIMDDAIYTSSVTIDTARYQLSPAIRAFGVRFIHRGSSSVNPISIERLNLYTLQDQQVSLVLNNLTMNEYSGEWDGQCAGDFATTHRALALGKSAHNGLQDLQLQTMATHKEASKKGEDCVESSKVVAKTRVELKFDGKAYPVAQDKLLDHRF
>CP033055.1|AYM89918.1|1006388_1007462_-|threonine-phosphate-decarboxylase
MSEHGGNVLEMALKTGLDPAEIIDFSANINPLGMPASLKAAIIEHLTSAECYPDVEYRRLHAALARVHHCPPENIMAGNGATELIYAIVNRLRPRTALLLTPGFAEYRRALQRIDCQIEDFLLDEAGGFQPDDRLLQVLAERQPDCLFLATPNNPTGLMPDPALLQAIVACCRQHNIALIVDEAFIDFLPDAPGLIPQMAEYSRLYILRSLTKFFAIPGLRLGYLVSSDRAALQQMKQQREPWTINAYAALAGEVILDDRDYIQQTHQWLGEQRAWLFDALATLPHLRIWPGTANYIFLRCLRPGYDLQQALLQHRILIRHCANYPGLSADYYRVAIKSEAANHKLIAALQQVLAED
>CP033055.1|AYM89919.1|1008036_1008993_+|cobalamin-biosynthesis-protein
MTLLAWFAAFLLDSLLGDPPHWPHPVRWIGNLITVLQRAILRTCHSERALKLGGGLLWLGVVGSVWLVSWGFLTLMQYIHPWLGWLAEVWLIYTLLAGRCLEQAAMEVYRALQSADLEESRHKLSWIVGRDTSQLEEPQITRAVVETVAENSVDGVIAPLFFLLIGGAPLAMAYKAVNTLDSMVGYKTPKYRAIGYVSARMDDFANGLPARLSWLLLSCAARLNGLDYRQALRIGWRDRYQHTSPNCAWSEATVAGALGVRLGGPNNYFGQRVEKPWIGEARREIELADIPRSTRLMMTASLLALLLFAALRLLWLGA
>CP033055.1|AYM89920.1|1009042_1010584_+|cobyric-acid-synthase
MKRCVMVQGTASDVGKSLLVAGLCRIFMQDGYRCAPFKSQNMALNSGITARGEEMGRAQIFQAEAAGIAPDVRMNPVLLKPTSDCQAQVVLMGKVACNMDAVSYHEYKPQLQQQISEVYHSLASGYDIMVLEGAGSPAEINLRDRDIVNMGMAAIADAPVLLVADIDRGGVFAAIYGTLALLEPEEKARVKGVIINKFRGDIALLYSGLEQIEALTGVPVLGVMPWLNIDLEDEDGVALQNGKYAPTGSSHELDIAVVQLPYMSNFTDFNALAAQPDVGLRYVSHPAALAGADLIILPGSKNTLGDLQWLQHSGLAAALQDQHRAGVQIVGICGGYQMLGKHIIDGVESGVEQMVGLGLLDVTTRFAPQKVTTQVTAQCEPGLPGLWSGCGDQDVVGYEIHMGTTQLGSEAMPFSRLSLRNGQPDSAFDGAVNPAGNVLGSYIHGLFDSAPFCRALLNQLRQRKGLPVYDGPAFDYADYKQQQFDLLADKMREHIDMDKIYRLMTEHQQTGAQ
>CP033055.1|AYM89921.1|1010580_1011126_+|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase
MILITGGARSGKSSLAERLASGVSDRVLYIATSVVTDEEMAERVKLHRQARPAHWRTWEGSQQLASVIDQQAGAGDAVILECITTLIANLMFDLTGEMPVESIDFAVVETAIQRQIDDLLAACVRSPAAIYLVTNELGMGIVPENRLARHFRDIAGRVNQRLAAAAESVLLVISGIEVKIK
>CP033055.1|AYM89922.1|1011122_1011869_+|adenosylcobinamide-GDP-ribazoletransferase
MSLRLFWATLQLMTRIPLPASWTQGLAMDNYQRGIVGFPLIGLIVGAIGGAVFTLLAPWCGVPLAALGYVLALALVTGAFHLDGLADTCDGVFSARTREKMLEIMRDSRLGTNGGLALIFIVVAKVLVISELALRGVPMLATLAAAGVACRSLVVLMMYRQPYAREGNGLGNLYIGKISGGQTLFTLALGAALVALLGHGQGLFALGCALIAVMLLRTYLHRRLGGQTGDTLGAAIEIAELIFLLALL
>CP033055.1|AYM93886.1|1011878_1012496_+|adenosylcobalamin/alpha-ribazole-phosphatase
MRLFLVRHGQTAANRQGVFCGMTDLPLTEQGEQQARQIAQWLAEVPFTQAISSELRRAQHTAEIVLGQRELVIQPDGGFNEMNFGDWEMCHHQDLQQQDSAAWADWVADWQLACPPAGESFPLFSQRISQQAQRLLNEQGDGDRLLVAHQGSLSLLLAGLLKLPPTGMWHFPFTQGAYSVVELNQGFVTLKVFNSQAHWQPASRE
>CP033055.1|AYM89923.1|1012500_1013559_+|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase
MQTLSSLIDLIKPLDAAAMQQAAAKIDGLLKPPGSLGRLEQLATQLAGMRGFSEMAASRKQIIVMMADHGVYAEGVAVSPREVTVIQALNMVKGNTGVCVLAANAGAEVKLVDVGIDSEPLPGLIDMKVGRGSGNIARGAAMTRQQAEELLLATAQLTLEQAALGVKLFGVGELGMANTTPAAALVSVFTGREPQEVVGIGANFPSDRLHHKVDVVRRAIEVNQPDAQDALDVLAKLGGYDLVGMAGVMLGAAAAGLPVILDGFLSYASALAVCGIAPQARDYLLPSHFSAEKGAAAALEHLQLAPYLHLDMRLGEGSGAAIAMHIVDAACVMFNQMGSLADSNIVIPGNAT

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Crispr_ID: CP033055_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033055_3

3422344-3422462

Orphan

Consensus_repeat	Method
CCCCAAGCATTAATCCTGTTACAGATTAACTTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033055_3

>merge|CP033055|3|3422344-3422462|CRISPRCasFinder
CCCCAAGCATTAATCCTGTTACAGATTAACTTCTCTCCCACAGGAAGAGGGGACTGAATGTGCCACAACTCAATCACGGCACCCACCCCAAGCATTAATCCTGTTACAGATTAACTTCT

>CP033055|3|3|3422344-3422462|CRISPRCasFinder
CCCCAAGCATTAATCCTGTTACAGATTAACTTCT	CTCCCACAGGAAGAGGGGACTGAATGTGCCACAACTCAATCACGGCACCCA
CCCCAAGCATTAATCCTGTTACAGATTAACTTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP033055.1\|AYM91852.1\|3426920_3428558_-\|thiamine-pyrophosphate-binding-protein	unknown	unknown	gnl\|CDD\|180820
CP033055.1\|AYM91846.1\|3418630_3419236_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
CP033055.1\|AYM91841.1\|3413393_3413903_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225729
CP033055.1\|AYM91858.1\|3433045_3434308_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
CP033055.1\|AYM91847.1\|3419321_3420392_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
CP033055.1\|AYM91840.1\|3412671_3413397_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185185
CP033055.1\|AYM91849.1\|3422555_3423641_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224753
CP033055.1\|AYM91845.1\|3417846_3418326_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373315
CP033055.1\|AYM91853.1\|3428597_3430067_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143432
CP033055.1\|AYM91854.1\|3430083_3430878_-\|aspartate-dehydrogenase	unknown	unknown	gnl\|CDD\|237342
CP033055.1\|AYM91850.1\|3423892_3425887_-\|transketolase	unknown	unknown	gnl\|CDD\|183723
CP033055.1\|AYM91855.1\|3430891_3431686_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180818
CP033055.1\|AYM91842.1\|3413902_3415924_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185184
CP033055.1\|AYM91843.1\|3416059_3416617_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226069
CP033055.1\|AYM91856.1\|3431682_3432501_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP033055.1\|AYM91851.1\|3426113_3426866_+\|metalloprotease	unknown	unknown	gnl\|CDD\|320693
CP033055.1\|AYM91848.1\|3420384_3422154_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
CP033055.1\|AYM91844.1\|3417036_3417840_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|294013
CP033055.1\|AYM91839.1\|3411442_3412675_-\|hypothetical-protein	unknown	unknown	unknown
CP033055.1\|AYM91857.1\|3432500_3433025_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380354

Protein	Function_ID	Function_description	E-value
CP033055.1\|AYM91852.1\|3426920_3428558_-\|thiamine-pyrophosphate-binding-protein	gnl\|CDD\|180820	PRK07064, PRK07064, thiamine pyrophosphate-binding protein.	0
CP033055.1\|AYM91846.1\|3418630_3419236_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.6696e-13
CP033055.1\|AYM91841.1\|3413393_3413903_-\|hypothetical-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	3.71229e-33
CP033055.1\|AYM91858.1\|3433045_3434308_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.50179e-73
CP033055.1\|AYM91847.1\|3419321_3420392_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.29492e-144
CP033055.1\|AYM91840.1\|3412671_3413397_-\|hypothetical-protein	gnl\|CDD\|185185	PRK15285, PRK15285, fimbrial chaperone StfD.	1.0719e-55
CP033055.1\|AYM91849.1\|3422555_3423641_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|224753	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism].	4.71066e-46
CP033055.1\|AYM91845.1\|3417846_3418326_+\|hypothetical-protein	gnl\|CDD\|373315	pfam14817, HAUS5, HAUS augmin-like complex subunit 5. This family includes HAUS augmin-like complex subunit 5. The HAUS augmin-like complex contributes to mitotic spindle assembly, maintenance of chromosome integrity and completion of cytokinesis.	0.00382678
CP033055.1\|AYM91853.1\|3428597_3430067_-\|aldehyde-dehydrogenase	gnl\|CDD\|143432	cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.	0
CP033055.1\|AYM91854.1\|3430083_3430878_-\|aspartate-dehydrogenase	gnl\|CDD\|237342	PRK13303, PRK13303, aspartate dehydrogenase.	3.11994e-126
CP033055.1\|AYM91850.1\|3423892_3425887_-\|transketolase	gnl\|CDD\|183723	PRK12753, PRK12753, transketolase; Reviewed.	0
CP033055.1\|AYM91855.1\|3430891_3431686_-\|SDR-family-oxidoreductase	gnl\|CDD\|180818	PRK07062, PRK07062, SDR family oxidoreductase.	5.06397e-168
CP033055.1\|AYM91842.1\|3413902_3415924_-\|hypothetical-protein	gnl\|CDD\|185184	PRK15284, PRK15284, putative fimbrial outer membrane usher protein StfC; Provisional.	2.4849e-136
CP033055.1\|AYM91843.1\|3416059_3416617_-\|hypothetical-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	4.66264e-22
CP033055.1\|AYM91856.1\|3431682_3432501_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.53912e-27
CP033055.1\|AYM91851.1\|3426113_3426866_+\|metalloprotease	gnl\|CDD\|320693	cd07334, M48C_loiP_like, Peptidase M48C Ste24p loiP-like, integral membrane protein. This subfamily contains peptidase M48 Ste24p protease loiP (formerly yggG)-like family are mostly uncharacterized proteins that include E. coli loiP and ycaLG, considered to be putative metallopeptidases, containing a zinc-binding motif, HEXXH, and a COOH-terminal ER retrieval signal (KKXX). They proteolytically remove the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and golgi, binding one zinc ion per subunit. In eukaryotes, Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification (C is cysteine; A is usually aliphatic; X is one of several amino acids) is complete. Mutation studies have shown that the HEXXH protease motif, which is extracellular but adjacent to a transmembrane domain and therefore close to the membrane surface, is critical for Ste24p activity. LoiP has been shown to be a metallopeptidase that cleaves its targets preferentially between Phe-Phe residues. It is upregulated when bacteria are subjected to media of low osmolarity, thus yggG was named LoiP (low osmolarity induced protease). Proper membrane localization of LoiP may depend on YfgC, another putative metalloprotease in this subfamily.	4.58159e-113
CP033055.1\|AYM91848.1\|3420384_3422154_-\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	3.45841e-103
CP033055.1\|AYM91844.1\|3417036_3417840_+\|hypothetical-protein	gnl\|CDD\|294013	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators. Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.	3.03025e-10
CP033055.1\|AYM91857.1\|3432500_3433025_-\|cupin-domain-containing-protein	gnl\|CDD\|380354	cd02225, cupin_PA3510-like, Pseudomonas aeruginosa PA3510 and related proteins, cupin domain. This family includes bacterial proteins homologous to PA3510, a Pseudomonas aeruginosa protein of unknown function with a beta-barrel fold that belongs to the cupin superfamily.	1.1905e-73

>CP033055.1|AYM91848.1|3420384_3422154_-|iron-ABC-transporter-permease
MKALRNKWQSLPRGLVVLITALVIYVPLSFIVIQSFLSAPFFSPSKVFSLEAFRFIFTDPDFYKALKSGFILAFGLVVISIPLGGVLAFLMVRTDLPGRRFIEPLILVPIFVSPMVLGFGYVVAAGPVGFFSLWAESLLGFVPWNIYAMGSIVVIAGLTHVPHAYLYISSALRSVGSDVEEAARTAGASPLQVMTAVSLPMVRPSILYASVLLFFLGLEVFGLMLVLGDPEGNLVLATYLYQLTNKLGTPSYHLMAAVAVVLICITIPLVMLQRRLMRTANRFVTVKGKASQARALPLGKWRWVAGGVVVLWLTVTIGVPLVGVVLRAFISNWGVGVSIWDELSLNTFRTIWQQPNLLRAIVNSMAIGVFGGALAVVCYLFIGIAMHRKPDGVTRFLDYSVLVPRAVPGLLAGLAFLWVFLFLPMWLDKSLKAGWLSALPIAEWLRENLVVWLRSLRSTIFSVWLAYTVVWMAYGLRLISSTLLQVAPELEEAARSTGASRGQITRHVTIPLSRYGLIGSWLLMFLIFEREYSTGVYLLSPGTETIGSMLVSLWAAGAIDIVAALSFINILLVVLGLGIALRFGVKIHD
>CP033055.1|AYM91847.1|3419321_3420392_-|ABC-transporter-ATP-binding-protein
MIELSVDNLHLTYGDNPVLKGVSMQLKRGEVVSLLGPSGSGKTTLLRAVAGLEKPTQGKIVIGNNTVYDGTARSEIPAEERNLGLVFQSYALWPHKTVFDNVAYPLKLRKTPAAEVTQRVQAVLEQLGLGQLGKRHPHQLSGGQQQRVAIGRALVYNPPVILLDEPLSNLDAKLREEARVFLRELIIKLGLSALMVTHDQNEAMAISDRILLLNNGKIEQQGTPQEMYGSPATLFTAEFMGSNNRLFGKVTEIREGNARIEGKDWVLWGKAGAGLTTGQEATAVIRVERVRLGEDPQGNQIALPLLTSMYLGDRWEYLFRTVAEDFVVRAYGTEVRGQEMCTLSLPADHLWIFPKV
>CP033055.1|AYM91846.1|3418630_3419236_+|helix-turn-helix-transcriptional-regulator
MKNKVSISLNDHNSYFLAGLQYALIEYFTDIRTQVDFFSGYSSKRPDIIFQSLYQGEKTDICRRLPADAPQPLYFVIRDKAERQFTPPIRCIAKSSTLYRNQSIDDILGMVKLAMQFNSLPQERAQRCPACHRQSLSERERQVLYYLRQGMSQSQAACILQLKVKTVHSHKRSAMQKLNFTRNSELFHWLLHSGLTLNLSR
>CP033055.1|AYM91845.1|3417846_3418326_+|hypothetical-protein
MKKIIGAALLLTVLLMCLWYFNVHHQGRKPFRCDTQQVSLQVKAKSNIVLKASATILFSSSKSGMFYISGSIKENDTRYLLDRNTAFTITPSEIKSGNNVQFTHEQVHPADNTPDYIWRKYVMPEVELVDIYTEVVPLFHNALLIRGFSNPFLVCIKQD
>CP033055.1|AYM91844.1|3417036_3417840_+|hypothetical-protein
MKYTINLIVVFDPEHRTLALNNNNQTAIELSKPSCRVLNELIKNSGDNLSRDSLLKNAWEDYGFPPSNASLNNCISDLRKSFVSLGIEKPIIITLPRVGFRMEADIHPAPKQEADAKINKVEPVATKPEKVVAVKQAETVSPLPLVMPEKLIKKAMVMPILTLVIVLGIIIGLALLLWPPATPFKLIGYYKQCDIYSIRKDPVPGSEFRAKKILESEKLDCDLVRQDIFYTEERPDNELLKITFLASCQKDPTEGDYQHCKIFKTVE
>CP033055.1|AYM91843.1|3416059_3416617_-|hypothetical-protein
MKMKLRTLALTTLATAMLSGYAFADVPPGSQGNGEIMFKGSVIKAPCGLAPGQDGDNQNINLGQIADAQLKTVGYSAPKEFKIKLIGCSFDPAATAETKVNVRFDGMSVGAANGFLGVSGDAKGVAIRLLDAANKHVKIGATSDNYSLRTGDNTLQFSAQVVALDGQDIIAGTYDAMTNFSLTYL
>CP033055.1|AYM91842.1|3413902_3415924_-|hypothetical-protein
MDDKKKYSFISTVILCLIAVDSAKADGDNIEFETRALELRDNNNINLSNFSRPDYIPEGIYPLSLKINDRVITSDSFSVINLDGKSQICFAPQTIEQFGFKETPLAELIKRAVPGKPNCLLIAGYKGITARIDRGKSELLVSIPQALLKYSDPDWTPPAQWDDGIPGMLFDYTLSGNKYQGRNTSNSAFSSYGTLGANYQGWRLRSNYQASLYSSGYGDDQRQFTTTTVYAARALKEAGANLTIGKNYLQSDVFDSINYTGVAVVSDDRMLPPALRGYAPQLTGVANSNARITVTRGDSIIYEKMVPPGEFVIQDLTDATSGQLKMTIREENGEERVSTIETSNVPFLTRSGHIRYKGMVGQMNQTNGSIKPLLATGEASVGVFSGGSAFGGVLLTDENYYALNGGIGYDMNTLGAISVDMTHASSKLEHQTLKGESYRFNYSKVFDSIDSQITFAGYRFSEKNYLSLDNFVAMKVSPDFTSTNKESYNLVASKNFRDLGISVNAIYNRQTYWQDVSDSNSYGLSVAKSFDIGSLKNVNAYVSLNRTEYKTSFVSQEQKNNNTVYFSLSIPLNSQSYLSTAMRVSNGSVSPSATYTNNSDPGNTWSIGSSSSSSFSNSNLNGNMVMNRDAYAATLNTSMSSKDYYLGGVSNRVLPLPSTVLPYIVMVMLAIPA
>CP033055.1|AYM91841.1|3413393_3413903_-|hypothetical-protein
MVDTGGIEGVYVGGRGNNNAMPTNANGIAVINNVPDYYRTNYTIDTNLLPDDVESTNPNIQMVLTEGAIGYRKLNVYRGIKALIKLTDSQGRAIPFGTTVEENQERRQVGVVGENGETYISGIGAQAHLSVLDSDGQRCLFTLPAQGLSLSSALPIACRIDSSSQGTSQ
>CP033055.1|AYM91840.1|3412671_3413397_-|hypothetical-protein
MMHKSLSAGLVSGLLFLFAGTAQAAISIDRTRVILLGDEKSSPVNVINHSKTLPYLAQTWLENEAGEKISSPLTALPPLQRVEKDSTVQIRVTPLADAARLPQDRESLFFFVLQEIPPKSDKANAIQLALRIKVKVFYRPASLKPLAEKVWQDEIRLEPGSQGLKLVNPTPFFVILPEVMEGKRTLLAEDEAITLRPKSEVTLASIKPQTQKITLKYINDYGAYQPLNYSCTATTCVRDKS
>CP033055.1|AYM91839.1|3411442_3412675_-|hypothetical-protein
MMKTVKRRLQRQIKILLTALILALCSLNNTALAAEDLMACEWENLNDKFVRLTSGSFRDVIEPFIEWKKEAYDCDKDGCYYRYYWFIPNRTYTVTASTAVRCINMGRKAGPIRFSFEREFTGKPTHYQNLTMKISGAGSLSLSGLENMSGGTIRNWSDGTLAPCQKNCYSVSTGWPQYYKTMSFTFTVRPIKSRVDYGVMPNYDGINMLGNLWVHASSDDPGMSYYGWGTSLPGICGLMNSDMSGCSPSSGGGGAGPIKPPTPTCTLTITTPGVVEFQPISSDDLSRNRVRMEDFTLTATKGPVQSQTCVGSVYNLPGTIKTEGGYSISSTFWGINHSSGSPQGIGLKLFDLGKGSYLQFNHTYPSFIANISSMSETKRIRAEIAATTNDLKRIKDGEYSQVLIFEVKMP
>CP033055.1|AYM91849.1|3422555_3423641_-|ABC-transporter-substrate-binding-protein
MFLKIGVSMAAAVLISAPAFAQFPAGYPADYQKIVDAAKKEGKVVVYSTTDTKAAGPLIQGFEALYPGIKVEYNDMNSTELYNRYISEQAAGGTSGDVVWSSSMDTALKLATDYALEYASPEQGQLPKWAVWKDKAYGTTYEPVVFIYNKRLIPQGEVPDSHAALAKLIASQPDKFKKKVTTYDIEKSGLGFMLSVQDFKADPNYFATLADIAKGGLAVQSSTGTMMERVSSGENLIGFNILGSYAEARAKTDPSLGISYPKDYTLVLSRVTFISQEAANSNAAKLWVNYVLSEQGQNILANKADIPSIRNDIEGKNDIDGMTQMLGKALKPIPVDESLLEYLEPAKRLDYIKQWRTAAAK
>CP033055.1|AYM91850.1|3423892_3425887_-|transketolase
MSSRKELANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDYLNHNPTNPHWADRDRFVLSNGHGSMLIYSLLHLTGYDLPMSELENFRQLHSKTPGHPEYGYTPGVETTTGPLGQGIANAIGFAIAERTLAAQFNRPGHDIVDHHTYAFMGDGCMMEGISHEVCSLAGTMKLGKLTAFYDDNGISIDGHVEGWFTDDTAKRFEAYGWHVVRGVDGHNSDSIKAAIEEAHKVTDKPSLLMCKTVIGFGSPHKAGTHDSHGAPLGAAEVAATREALGWKYAAFEIPQDIYAQWDAKEAGKAKEAAWNEKLAAYTKAFPELAAEFKRRTSGELPANWKAEAKKFVEQLQANPANIASRKASQNSLEAFGKLLPEFLGGSADLAPSNLTMWSGSKSLGDDLAGNYIHYGVREFGMTAITNGIALHGGFLPYSATFLMFVEYARNAVRMAALMKIRNVFVYTHDSIGLGEDGPTHQPVEQLASLRVTPNMSTWRPCDQVESAVAWQYGIERNDGPTTLVFSRQNLTQQPRTAEQLANVYRGGYVLKDCAGTPDVILIATGSEVGITVEAADKLTAEGRKVRVVSMPSTDAFDKQDAAYRESVLPAAVSARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFKEFGFTVDNVVAKANALLK
>CP033055.1|AYM91851.1|3426113_3426866_+|metalloprotease
MKIRTSLIALSITALLSGCQNLNTDTLLQSGAQAYQAATLSDSDVKALSDKSCAEMDSQEQIAPASSDYTKRLNKIAAALGDNINGTPANYKVYVTKDVNAWAMANGCIRVYSGLMDMMDDNEVEGVLGHEMGHVALGHTRKAMQVAYGTVALRTAASSAGGVAASLSQSQLADLGEKLVNAQFSQKQESEADDYSFDLLKKRGINPAGLATSFDKLAKLDGGHESSMFDSHPTSEARAKHIRDRIAAGK
>CP033055.1|AYM91852.1|3426920_3428558_-|thiamine-pyrophosphate-binding-protein
MSEKITVGEAIARTLEQYEVAAMYGIISIHNLPIADAVGQRGAIRFVPARGEAGAVTMADAHGRFSGLGVALTSTGAGAGNAVGAMIEALNANTPLLHITGQVEKAYLDADAGFIHETKDQLGFLRACSKQAYRVNSPEQAVAVIQRAILDAQTVPCGPVAVEIPIDIQNSLVPASLVGKVVLPPALPAADEAAVERLYQQVKHAKRPLLWVGGGALACREAVKRLADAGVVVISSTHGRGILPDSHPRSLRAFHNSPSVEAILTQCDLTLVAGSRLRSNETRTWSLPLPRPLVQIDIDPAAANRNYLADEQVYGDCSALLSALAARLAPGEKVNAEWDAEIGRAVELAETALRQQSGEYAKLNDAIAASLPQDGLLVRDITVSGSVWGSRLFRAISPLCNIHSLAGAIGMGLPMAIGTAIANPQRKVVGLVGDGGLALGLGELATMAQEQANITLLIMNDGGYGVMRGIQDKYFSGRQYYNELHTPAFCQVAEAMGLKAWKVSDAAQFGGVLAEAINYPGPSVVEVDMKSVGPLTFAGPPQKLY
>CP033055.1|AYM91853.1|3428597_3430067_-|aldehyde-dehydrogenase
METLKIFLAGRWCEGRGEEMSSVFPADGSVNARLRAANVEDVNEAVAAAEKAWRDPSWRGLVPHQRAAILHRVSDLITEQVEALAQLQTRDNGKPLTETRGLVMSAAATARYFAAACEVLEGELPTQRNRDAMTLSQYQPLGVIAAITPWNSPIASEMQKVAPALAAGNAVVLKPAEATPLMALKLAELFEQAGLPAGLLSVLPGKGSVIGEALARHPLVKKISFTGGTSTGRHLAHIAAEKLIPTSLELGGKSPTIVLEDADLEQAARGICYGIFSSAGQACIAGSRLFVHRSLYQPLLARLCELTAGLRIGNPLQAGVHLGPLISHKHRQSVADYVALAQQEGGRVLIGGEAPADPQLAQGSYYLPTIIEGLSNSARTCQEEIFGPVLVVLPFDDEQQLIEQANDSIYGLAAGIWSRDFARSMALAEQLETGTVWINTYKTFSISTPFGGFKQSGLGREKGLHGIQAYMQQKSLYLSLNNQPNSWSN
>CP033055.1|AYM91854.1|3430083_3430878_-|aspartate-dehydrogenase
MKKIMMIGYGAMAKEVLARLPEGVAVGWIVARETHHAEIDAAFAGQVQALTHPDQCTEQPDLVLECASQQAVAEFGEAIVKRGWRLAVISTGALADAALQLRLQQACTRYHGRLIVLSGAVAGMDGLASAREGGLDSVTYQSSKSPASWRGSPAEKLINLDAVSEAQVFFEGSAREAASMFPANANVAATIALHGLGMDATRVRLQVDPHTQRNTHRLQVCGQFGEFQIELCGNPLASNPKTSTLAALSAVQACRSLVDGGFIA
>CP033055.1|AYM91855.1|3430891_3431686_-|SDR-family-oxidoreductase
MNFQIERRVAVVTGGSSGIGFETLRLLLAEGAKVAFCGRNQDKLASAEASLREEFPQAEILALRCDVLDAEQVAKFAEQVSTHFGAVDMLINNAGQGFVAHFDQTPREAWLHEAELKLFGVINPVQAFLPALERSDIASITCVNSLLALQPEEHMIATSAARAALLNMTLTLSKELVSKGVRVNSILLGMVESGQWRRRFAERQDQQQSWEQWTAAIAERRGIPMGRLGKPQEPARALLFLASPMSSFTTGAALDVSGGFNRHL
>CP033055.1|AYM91856.1|3431682_3432501_-|alpha/beta-hydrolase
MNGLPERQQADCGGQRLSWREAGHGRAVVLLHGISSGSASWVKQFSDRALTDGHRLIAWDAPGYGGSAALAQTEPNAAAYANALAELIAELQLQQPLIVGHSLGALIGSAFAAANPDGLSGLVLADPAQGYATAPLEKRQQVYGQRKQMIETLGPQGYGEQRAAALLREDADPQDIAWVRSGMQQLNPAGFLSAAWMLANDDINRYLLRYRGPLQVWCGSVDRITPPQGAATLAQQQDATMRLIDVAGHASYLDAPALFNRYLQDFTGAIQP
>CP033055.1|AYM91857.1|3432500_3433025_-|cupin-domain-containing-protein
MSQVENKAGIKPQDLTMENWVESRIARFEGRKYDWNALKFQADYDPKYRRAQMRYIGTGATGVVSDTNTIPAGNFTFSTMVLPSKCEGPLHLHDDVEEVFFMLKGKITLMIQDGEEYYETILKERDLISVPAGIYRGLFNHGEEEALMCVMLGTSKPETPTYPADHPLSKVKRN
>CP033055.1|AYM91858.1|3433045_3434308_-|MFS-transporter
MTTQDIDARSGRVGDAVAENSPTSVRWSVPAALFACVLLAFFDKISIAALFSDHEFQQAMGIGFDPTRLGLLMSAFLFSYGFSSMLLSGIGDRLNPVKVLIGMMVTWGVLMVLMGMTRSYHTMMTLRILLGIAEGPLLPMAYAIVRQAFPQRLQARATMLWLLGTPIGAALGFPVTLFILSRFNWETTFFFMAFLTVPVMLLVLFGMRHLNVARPAASTTSKPAVAERKQLRRELFSTPHFWMICLFNIAFLTYLWGMNGWLPSYLIEGKGIHLEHAGYLSSLPFIAMLLGEVVGAWLSDKMDRRALACFISLCGAGIGLGVVLYMQGTYSVIAAMSFSTFMWGAGAPNIFALLAKATSSRVSATAGGVFNGLGNFAGALAPVLMGALIAATGNMDNGLLFLVVMAFVGCAILLPLLNKY

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Crispr_ID: CP033055_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033055_4

3766011-3766150

Orphan

Consensus_repeat	Method
CTCTGTTGGAAGCGTGGAGGTAATCTCAGCAACCTGCATTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033055_4

>merge|CP033055|4|3766011-3766150|CRISPRCasFinder
CTCTGTTGGAAGCGTGGAGGTAATCTCAGCAACCTGCATTTTATTACTTAATGGGCTGACATTCTCTCCCACAGAGAGGGAGCTGATAGCCTCTGCTCTGTTGGAAGCGTGGAGGTAATCTCAGCAACCTGCACTTTATT

>CP033055|4|4|3766011-3766150|CRISPRCasFinder
CTCTGTTGGAAGCGTGGAGGTAATCTCAGCAACCTGCATTTTATT	ACTTAATGGGCTGACATTCTCTCCCACAGAGAGGGAGCTGATAGCCTCTG
CTCTGTTGGAAGCGTGGAGGTAATCTCAGCAACCTGCACTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
CP033055.1\|AYM92126.1\|3775167_3775587_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227681
CP033055.1\|AYM92114.1\|3762710_3763691_+\|gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
CP033055.1\|AYM92116.1\|3764723_3765959_+\|serine/threonine-transporter-SstT	unknown	unknown	gnl\|CDD\|184190
CP033055.1\|AYM92123.1\|3773064_3773739_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
CP033055.1\|AYM92118.1\|3766782_3768273_-\|altronate-dehydratase	unknown	unknown	gnl\|CDD\|377287
CP033055.1\|AYM92113.1\|3762114_3762621_+\|M48-family-peptidase	unknown	unknown	gnl\|CDD\|224368
CP033055.1\|AYM92124.1\|3774323_3774695_+\|DUF1090-domain-containing-protein	unknown	unknown	gnl\|CDD\|368932
CP033055.1\|AYM94027.1\|3773738_3774110_+\|EnvZ/OmpR-regulon-moderator-MzrA	unknown	unknown	gnl\|CDD\|236728
CP033055.1\|AYM92111.1\|3758764_3760786_+\|NADPH-dependent-2,4-dienoyl-CoA-reductase	unknown	unknown	gnl\|CDD\|239240
CP033055.1\|AYM92108.1\|3751610_3753125_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
CP033055.1\|AYM92112.1\|3760825_3761965_-\|23S-rRNA-(guanine(1835)-N(2))-methyltransferase-RlmG	unknown	unknown	gnl\|CDD\|184963
CP033055.1\|AYM94026.1\|3755077_3756784_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|238625
CP033055.1\|AYM92115.1\|3763692_3764430_+\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|181635
CP033055.1\|AYM92109.1\|3753433_3754774_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
CP033055.1\|AYM92110.1\|3756858_3758478_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223562
CP033055.1\|AYM92125.1\|3774859_3775165_+\|DUF883-domain-containing-protein	unknown	unknown	gnl\|CDD\|226941
CP033055.1\|AYM92121.1\|3771518_3772295_+\|transcriptional-regulator-ExuR	unknown	unknown	gnl\|CDD\|183176
CP033055.1\|AYM92119.1\|3768293_3769706_-\|glucuronate-isomerase	unknown	unknown	gnl\|CDD\|376859
CP033055.1\|AYM92122.1\|3772482_3772932_+\|hypothetical-protein	unknown	unknown	unknown
CP033055.1\|AYM92120.1\|3770102_3771401_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326

Protein	Function_ID	Function_description	E-value
CP033055.1\|AYM92126.1\|3775167_3775587_+\|hypothetical-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	2.01429e-48
CP033055.1\|AYM92114.1\|3762710_3763691_+\|gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	4.00888e-66
CP033055.1\|AYM92116.1\|3764723_3765959_+\|serine/threonine-transporter-SstT	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
CP033055.1\|AYM92118.1\|3766782_3768273_-\|altronate-dehydratase	gnl\|CDD\|377287	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus. Family members include the C termini of D-galactarate dehydratase (EC:4.2.1.42) which is thought to catalyze the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, and altronate hydrolase (altronic acid hydratase, EC:4.2.1.7), which catalyzes D-altronate = 2-keto-2-deoxygluconate + H2O. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core.	0
CP033055.1\|AYM92113.1\|3762114_3762621_+\|M48-family-peptidase	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	7.13476e-38
CP033055.1\|AYM92124.1\|3774323_3774695_+\|DUF1090-domain-containing-protein	gnl\|CDD\|368932	pfam06476, DUF1090, Protein of unknown function (DUF1090). This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.	1.64358e-29
CP033055.1\|AYM94027.1\|3773738_3774110_+\|EnvZ/OmpR-regulon-moderator-MzrA	gnl\|CDD\|236728	PRK10629, PRK10629, EnvZ/OmpR regulon moderator MzrA.	7.78053e-48
CP033055.1\|AYM92111.1\|3758764_3760786_+\|NADPH-dependent-2,4-dienoyl-CoA-reductase	gnl\|CDD\|239240	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provides a hydrid ion to the C5 atom of substrate, and Tyr and His are proposed to form a catalytic dyad that protonates the C4 atom of the substrate and completes the reaction.	0
CP033055.1\|AYM92108.1\|3751610_3753125_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	2.92838e-142
CP033055.1\|AYM92112.1\|3760825_3761965_-\|23S-rRNA-(guanine(1835)-N(2))-methyltransferase-RlmG	gnl\|CDD\|184963	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG.	0
CP033055.1\|AYM94026.1\|3755077_3756784_-\|amidohydrolase	gnl\|CDD\|238625	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.	2.42499e-115
CP033055.1\|AYM92115.1\|3763692_3764430_+\|glutamine-amidotransferase	gnl\|CDD\|181635	PRK09065, PRK09065, glutamine amidotransferase; Provisional.	3.46999e-99
CP033055.1\|AYM92109.1\|3753433_3754774_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	5.57977e-45
CP033055.1\|AYM92110.1\|3756858_3758478_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	1.64327e-121
CP033055.1\|AYM92125.1\|3774859_3775165_+\|DUF883-domain-containing-protein	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	1.89718e-36
CP033055.1\|AYM92121.1\|3771518_3772295_+\|transcriptional-regulator-ExuR	gnl\|CDD\|183176	PRK11523, PRK11523, transcriptional regulator ExuR.	0
CP033055.1\|AYM92119.1\|3768293_3769706_-\|glucuronate-isomerase	gnl\|CDD\|376859	pfam02614, UxaC, Glucuronate isomerase. This is a family of Glucuronate isomerases also known as D-glucuronate isomerase, uronic isomerase, uronate isomerase, or uronic acid isomerase, EC:5.3.1.12. This enzyme catalyzes the reactions: D-glucuronate <=> D-fructuronate and D-galacturonate <=> D-tagaturonate. It is not however clear where the experimental evidence for this functional assignment came from and thus this family has no literature reference.	0
CP033055.1\|AYM92123.1\|3773064_3773739_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	8.64537e-47
CP033055.1\|AYM92120.1\|3770102_3771401_+\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.84893e-117

>CP033055.1|AYM92116.1|3764723_3765959_+|serine/threonine-transporter-SstT
MNKLLLRITQGSLVKQILIGLVAGIVVALVSPASAAAVGLLGSLFVGALKAVAPLLVLVLVMASIANHKQGQKTNIRPILFLYLLGTFAAALTAVVISFIFPSTLALAVGTTDINPPGGIVEVLKGLLMSVVANPFNALINANYIGILAWAVGLGLALRHASDTTKSLITDMSHAVTMVVRAVIRCAPLGIFGLVASTLADTGFSALWGYAQLLFVLIGCMLLVALVLNPLIVYWKIRRNPYPLVFTCLRESGVTAFFTRSSAANIPVNMELSRKLNLNEDTYSVSIPLGATINMAGAAITITVLTLAAVHTLGIPVDVPTALLLSVVAAICACGASGVAGGSLLLIPLACNMFGIPNEIAMQVVAVGFIIGVLQDSAETALNSSTDVLFTAAACQAEDQRLANEDPLKVR
>CP033055.1|AYM92115.1|3763692_3764430_+|glutamine-amidotransferase
MKPLLLMQTGDAPQMIQQEQDNFEQMFLKQGNIDADRVHIVHVLAGETPLPPEDYCGVVITGSAAMVTERLPWSERAAEWLRQAMQINLPIFGVCYGHQLLAYALGGEVGYHPQGMEVGTLEIELLPAARSDKRLATLPARFNVNLIHAQSVLTPPPGAEVLARSQQDACQILRYGDNALTTQFHPEFNGAIMQRYLSWLSELEPAKQQSYRLKQQQVSDTPFSQLLLQDFVASLGVQQALAGVG
>CP033055.1|AYM92114.1|3762710_3763691_+|gfo/Idh/MocA-family-oxidoreductase
MIRFAVVGTNWITERFIDAAHESGKMRLTAIYSRKLEQAQAFGANYPVEHFFDSLEALAQSDVIDAVYIASPNSLHCQQSLLFLSHKKHVICEKPLASNLREVEQLVACARENQVVLFEAFKSAHLPNFLILQQALPKIGKLRKAFINYCQYSSRYPRYLAGENPNTFNPHFSNGSIMDIGYYCVASTVALFGAPQTVLASATLLDTGVDAHGSVCLNYGDFDVVISHSKVSNSDIPSEIQGEEGTLVIEKISEAQGVVLTPRGENSQVLTQPQHINTMLYEAQVFAELVEKRQVEHVGLENSLIVASLLTEIRRQTGVVFPADGE
>CP033055.1|AYM92113.1|3762114_3762621_+|M48-family-peptidase
MSELSYLQGYPDHLQMQVQQLIQQQRLGEVLLQRYPQVHGCTTDKSLYQFTVDLKNQYLRNAQPLSKVAYDSKIQVMKHALGLHTAISRVQGGKLKAKAEIRVATVFKNAPEPFLRMIVVHELAHLKEKDHNKAFYSLCCHMEPSYHQLEFDTRLYLTHLSLFGELYE
>CP033055.1|AYM92112.1|3760825_3761965_-|23S-rRNA-(guanine(1835)-N(2))-methyltransferase-RlmG
MSQLDLGTQQLELERYPQQEEATQLQAWEAADEYLLQQLENVDIGERPVLIFNDNFGTLACALHGYKPYSISDSYMSQLATRHNLKLNELDVEQVTLQDSLAELPANPAVVLIRIPKALALLEQQLRALRDVVAPDTLIVAGAKARDVHTSTMQVFERVLGPTRTSLAWKKARLIYCQVADIVPPAAPETTDWLLDGTDWLIHNHANVFSRGSLDIGARLFLENLPKDLQGHIVDLGCGNGIIGMRALVQNPQAQMTFVDESYMAVASSELNVAHNLPQEMDRCQFEVNNSLAGIERESLQAVLCNPPFHQQHAITDHTAWQMFCDAKRCLQVGGELWIVGNRHLDYYQKLRRLFGNCTTVASNQKFLILKAVKSGARY
>CP033055.1|AYM92111.1|3758764_3760786_+|NADPH-dependent-2,4-dienoyl-CoA-reductase
MSAYPNLLAPLDLGFTTLKNRVLMGSMHTGLEELPDGPERMAAFYAERAAAGVALIVTGGIAPNEKGVVYRGASVLNQPQQVAHHRIVTEAVHQAGGKIALQILHTGRYSYQPQPVAPSALQAPINPFSPAALTTQEVEQTIADFANCAALAQQAGYDGVEVMGSEGYLINQFLVSRTNQRTDQWGGSFSNRMRFAVEIVRAVREATGPEFILIYRLSMLDLVEDGSSWQEIEQLAVAIEQAGATLINTGIGWHEARIPTIATMVPRAGFSWVTRKLMGKVKIPLITTNRINDPAVAEQVLADGCADMVSMARPFLADAAFVQKAAEGRADEINTCIGCNQACLDQIFDHKLTSCLVNPRACRETEMPLIATAMPKKLAVVGAGPAGLAFATTAASRGHQVTLFDAAEQIGGQFNIAKQIPGKEEFHQTLRYFRRQLALNEVELKLGQQVQPQDLADFDEVILACGIVPRMPAIAGIEHAKVMNYLDVLRDKKPVGQRVAIIGAGGIGFDVAEYLSQHGTSSSLDPAAFNREWGIDSLLEQRGGLSAQGPEVPASPRQIFLLQRKTSKVGEGLGKTTGWIHRTSLAVRGVKMLNSVNYQRIDDEGLHILRAEQESCLPVDTVVICAGQEPRRELQQPLLEMGKTVHLIGGADVAAELDARRAIDQGTRLAMAL
>CP033055.1|AYM92110.1|3756858_3758478_-|ABC-transporter-ATP-binding-protein
MAHFAQSPYFVLHQLTCQFANGETLFGPLNLAVEQLHCGLVGRNGVGKTRLLRLIAGLDQPASGHIETQATFAYVAQQPHFTEQTTLATLLGYGEVFAAQARLEQGCPRLDDIDRLEGQWDLADRLSTAFAAAGLPDFDPQRSAGELSGGERMRAALCGALMSRADFLLLDEPTNHLDSTGREWLYQQLAQWRGGQLIASHDRQLLARMQRIVELTPEALRSYGGNYHDYHRLREQEQQAARAQLEHAALERRRVRARQQKEHDNYQRHSARTLRTVDSLNIASFEKAALKGAARDTMGTLRKQHQGQKNTLDEAVREARERVEEDNPVMLTLPGSAVAAGKQVLVLEQLQLPFVSLPPLDWRMDGPMRVAITGPNGCGKSTLLKVILGQLAASAGHCHCSVSLAYLDQNLSQLDLTRSVVDHLGLQDTPLAEGVLRSQLAQRQLNADRVTLPLVALSGGERLKAALACVLWRREPAQLLLLDEPTNHLDLASSQAIEAALAEFPGAMLVVSHDEDFLQALRLTHRLAWSAAGWCFQAM
>CP033055.1|AYM94026.1|3755077_3756784_-|amidohydrolase
MTPVATAAEVIYYNGTIFTADAENRVCSALAIGQGYILAVGTDEQVLALATPTTERIDLHGKMMMPGLIDSHMHPFWGGKQLKGCSLHYAALTAEQTLQHIQDHLDKYPAGDDEWLTVRAWQRQAMIPVGADMSRALLDSLNTCRPVALFANDCHTLAANSRALEMLGIDENTPVPPDGKIARDANGRLTGILEDAPAMRAFDSIPSGTAEQNVQVAAHVQQVLHEQGVTTVMDTRVFAEQLEAFAVLRDRGELTLRVLGAKEVTPDSVQGPEDAARAVQEVVAFAEQWSSQPWTPQAGISVGHLKLFVDGVLQPPTMTAALLEPYREHHGEAKSERYGDLYFTTPVLNALIVECGRAGLHPHTHTVGDGAIEQVLDAVELMRAACPGKDIRPGLAHNELVAPHQYARFASLAATAVLSFQWAGLPGVLIDEEREMLGEARFPHLEPAARFLDAGARLAYGSDWPIDRLDEWYNLQVGMTRRAWDSEGNPAGPRLDNDRDLTLIETLRAATIDAAYMIAKEQYIGSLEVGKFADAIVLHHNLFEQPAEKLYQTRIERTLVGGKISYQS
>CP033055.1|AYM92109.1|3753433_3754774_-|APC-family-permease
MPQNIRLQRVLKTPALVAFGLAYMVPLGVFTTYGQVTVLSQGHLPVAYLVTIVTILFTALSYCRMTNAMPLAGSAYSYVQRSFGGKTGFLVGWAQILDYLFLPMLNYLVLGIFLHEAFPSIPAYVFILGSIASVSALNILGVRLLSSVNFTLIALQMVFIVLFIVLAFSEADLSPASLMKPLLVDAGDFSGLIAGAAVLCLAFLGFDAIATMAEEAADAKRTLPRAILITVICAGGIFVAVSYAAHLAYPDWQSLIPHQDTASLIISEHVGGKWMYNFFMATYLTGVYASSMSAQTGVSRIFYAMGREGVLPRKVFYHLHPRFRTPWRAIVFVAIISLLALWMDLSMVVSMISFGALGAFTFVNLSVIKHFLINQKRRGLNAMFKYGLLPLIGFGMSVWLWVNLDPEALKVGFTWLFAGFIYLLWLTKGMRQDPPSTQDDIGDLLD
>CP033055.1|AYM92108.1|3751610_3753125_+|PLP-dependent-aminotransferase-family-protein
MRSLSGDLLLQRLGEQPDDKLHKRLYNAIRTSILDGSLPPSSRLLASRDLAQELGLSRNTVLTVYEQLLAEGYVFSRQGSGTFVAETVPDSCLSTASQPIGGDGEPRRAELSQRGITLLQHASASPKQWGAFIPGVPDVNAFPHHIFSKLQARISRRPTSQRLTYSNQGGSPELRHALVDYLRVSRSVRCSPEQILITEGIHQAIDLVTRMLCNPGDDVWIEEPGYWGIRNILRMNGVNICPWAVDEAGMVPPEQPAALPRLIFVTPSHQYPLGSVMSLARRQRLLALARAAGGWIVEDDYDSEFRFSGQPIPALQGLEADAPVIYIGTFSKTLYPALRLGYVVLPKPLMDELKTAHAELYRGGHLIIQAALAQFIQEGHYTAHIRRMRLLYAKRRGFLTALIEQHLGKQALSEFNSNAGLHLVLNLPDDADDVAIAAAANERGVLVRALSRYYMLPNARRGLLMGFACVPEEQMAAAFDVLLECIGSPHPNPLPQGEGTDRVG
>CP033055.1|AYM92118.1|3766782_3768273_-|altronate-dehydratase
MQSIIKIHAKDNVAVALCDLAAGDQPVWEGQAIALAQDVARGHKFALEPIAAGEMIVKYGLPIGHALVAIAAGEHIHSQNAKTNLSDLDSYQYQPEFQTLLAQAADREVQIYRRSNGDVGIRNELWIIPTVGCVNGIARQILQRFLKETREAEGIDGVHLFSHPFGCSQLGQDHENTRTMLQNMVRHPNAGAVLVIGLGCENNQVDAFRTTLGEYDEQRVRFMVCQQQDDEVADGLAHLHALYQIMRDDRRQPGKLSELKFGLECGGSDGLSGITANPLLGCFSDYVIANGGTTVLTEVPEMFGAERILMSRCRDEDTFEKTVSMVNDFKQYFIAHNQPIYENPSPGNKAGGITTLEEKSLGCTQKAGQSQVVDVLKYGERLRLPGLNLLSAPGNDAVATSALAGAGCHMVLFSTGRGTPYGGFVPTVKLATNSELAAKKPHWIDFDAGRLIHGLPMAQMLEQFVDLIVGIADGAPARNEVNDFRELAIFKSGVTL
>CP033055.1|AYM92119.1|3768293_3769706_-|glucuronate-isomerase
MATFLSDDFLLDSEFARRLYHDYAADQPIFDYHCHLPPQQIAENTRFKNMYDIWLKGDHYKWRAMRTNGVAERLCTGDASDREKFDAWAATVPHTIGNPLYHWTHLELRRPFGITGKLLSPTTADEIWQRGNELLSQEAFSARGIMKQMKVKMVGTTDDPIDDLRHHQAIAADSSFDIKVLPSWRPDKAFNIEAAGFNDYMQQLEAAADTSISRFSDLCDALKKRLDHFAAHGCKVSDHALDVVMYGEADEATLDKILAQRLSGELPTQQQIAQFKTAVLLFLAAEYQRREWVQQYHIGALRNNNSRMFKTIGPDIGFDSINDQPVAESLSRLLDAQAKQGALPKTILYCLNPRDNEVIGTMVGNFQGEGTPGKIQFGSGWWFNDQKDGMQRQMTQLAQLGLLSRFVGMLTDSRSFLSYTRHEYFRRILCQMIGRWVEDGEAPADIALLGEMVKNICFDNAKHYFAIELA
>CP033055.1|AYM92120.1|3770102_3771401_+|MFS-transporter
MRKIKGLRWYMIGLVTIGTVLGYLTRNAMSVAAPSLEGSLGITTQQYSYIVAAYSACYTLMQPVAGYILDVLGTKIGYAMFAILWAIFCMGTALANSWVGLAMARGAVGMAEAAMIPAGLKASSEWFPAKERSIAVGYFNVGSSVGAMLAPPLVVWAIVAHSWEMAFIITGVLSLIWAICWLIFYKHPKDQKKLSSEERSYILDGQEAHHQTSNAKKMSAWQILRNRQFWGIALPRFLAEPAWGTFNAWIPLFMFKAYGFNLKEIAMFAWMPMLFADFGCILGGYLPPFFQKHFGVNLIVSRKLVVTLGAVLMIGPGMIGLFTSPYVAIALLCIGGFAHQALSGALITLSSDVFGRNEVATANGLTGMAAWTASTMFALVVGALADTMGFSPLFAALSVFDILAAIVIWTVLQNKPVSELEQERLQTADASS
>CP033055.1|AYM92121.1|3771518_3772295_+|transcriptional-regulator-ExuR
MEFTETRRLYQQLAAELKRRIEGGVYPVGEKLPAERYIAEEMNVSRTVVREAIIMLEVEGYVEVRKGSGIHVISNQQKHLVVPGESLEFATSGPFELLQARQLIESNIAEFAATQVTKQDIVQLMEIQEQARKEDRFRDSQWDLKFHVQVALATQNTAMATIVEKMWAQRVSNPYWIKLHEHIDERSIASWCDDHDEILKALIRKDPHGAKLAMWQHLENTKQMLFNATTDDFEYNADRYLFAENPVIHLDNMATTTK
>CP033055.1|AYM92122.1|3772482_3772932_+|hypothetical-protein
MRWLFAMLIALSCWTGSVSGPKLYAAQTAALASALSAQALFDEHVVSPYDQDYRPHSELRRKPLSKLLLSLPRMHSYPSSLQAPTQSVPTYTLATDLGYRLRPQRQADNPAPNRLRQVNWTLNFPQQQSRLGGWKESNILYRGSLTYHS
>CP033055.1|AYM92123.1|3773064_3773739_+|DedA-family-protein
MDIIKQLLDALWQQDFETLANPSLVWTLYVLLFMILFLENGLLPAAFLPGDSLLILVGVLVAKGTMNFPVTILILTTAASLGCWVSYIQGRWLGNTPTVQGWLAHLPAHYHQRAHQLFHRHGLSALLVGRFLAFVRTLLPTIAGLSGLSNARFQFFNWMSGLLWVLILVSVGFALGKTPMFRKYEDQLMFGLMMLPLVLLVAGLVGSLVVLWRKKRADRAGKDA
>CP033055.1|AYM94027.1|3773738_3774110_+|EnvZ/OmpR-regulon-moderator-MzrA
MAKRPRWQYALMLLLPLLALAAVLAPYILRTENELRIHVVQQGLSLPDGFYVYQRLDERGIRIKSITPEGDGLVIRLDSPEQQLLAREALENILPPGYSIALNESPIPSRWVRKFARAPLNLG
>CP033055.1|AYM92124.1|3774323_3774695_+|DUF1090-domain-containing-protein
MKLRHTLLLAIPLFTFSALSQAAVETCASKAQEIQTQIDYATKHGNSHRVAGLQKALSEVQTHCTEAGLQADRQKKIADKQEKVAEREQELKEAQETGKADKIANKQRKLAEAQAELKAAQAE
>CP033055.1|AYM92125.1|3774859_3775165_+|DUF883-domain-containing-protein
MAHDSHAENLRAELKSLADTLEEVLNSSTDKPKAELDKLRSKAEGALKETRARLSDASDKLAHQTKQMAGQADDYVRENPWTGIGIGAAVGVVLGVLLARR
>CP033055.1|AYM92126.1|3775167_3775587_+|hypothetical-protein
MAEQPQTRAQGPGKGVLDIAQRIVTIMVGMVETRVRLAVIELEEEKANLIQLLMMAGLTLLFTAFGLMSLLILIFWAIDPAYRLMALGTTTAVLLFLAVVGLVWTLSKARRSTLLGATRQQLELDRAELEEKHESPPVP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

148618 : 158397

Morganella_phage(25.0%)

integrase

attL 144371:144385|attR 155219:155233

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
144371:144385	attL	NA	NA	NA	NA
AYM89213.1\|148618_149485_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	8.2e-33	35.0
AYM89214.1\|149713_149926_+	hypothetical protein	NA	NA	NA	NA
AYM89215.1\|150064_150886_-	hypothetical protein	NA	NA	NA	NA
AYM93848.1\|151432_151822_-\|integrase	site-specific integrase	Q5G8V5	Enterobacteria_phage	1.0e-51	70.3
AYM89216.1\|151706_152903_+	DUF3383 family protein	I7B2P4	Escherichia_phage	6.2e-55	45.3
AYM89217.1\|153423_153783_+	hypothetical protein	NA	NA	NA	NA
AYM89218.1\|153796_154255_+	hypothetical protein	NA	NA	NA	NA
AYM89219.1\|154476_154674_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	8.6e-07	47.2
AYM89220.1\|154673_155096_+	hypothetical protein	A0A1W6JPH9	Morganella_phage	9.5e-27	56.9
AYM89221.1\|155109_155943_+	antA/AntB antirepressor family protein	A0A0P0ZCA2	Stx2-converting_phage	3.4e-20	46.8
155219:155233	attR	NA	NA	NA	NA
AYM89222.1\|156846_157026_+	hypothetical protein	A0A2H4JB52	uncultured_Caudovirales_phage	1.6e-07	53.4
AYM89223.1\|157047_158397_+	hypothetical protein	A0A1W6JNS5	Morganella_phage	1.3e-191	71.2

DBSCAN-SWA_2

797784 : 806599

Escherichia_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM89765.1\|797784_799077_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.0e-92	52.4
AYM89766.1\|799340_801791_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	9.5e-220	49.7
AYM89767.1\|802001_804452_+	twin-arginine translocation signal domain-containing protein	A0A077SK27	Escherichia_phage	3.7e-224	50.6
AYM89768.1\|804462_805080_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.9e-76	59.1
AYM89769.1\|805081_805942_+	dimethylsulfoxide reductase	A0A077SK59	Escherichia_phage	5.3e-24	33.5
AYM89770.1\|805990_806599_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	7.5e-25	33.8

DBSCAN-SWA_3

877670 : 931875

uncultured_Caudovirales_phage(40.0%)

plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM89823.1\|877670_879440_-\|protease	Lon protease family protein	NA	NA	NA	NA
AYM89824.1\|879627_880086_+	macrodomain Ter protein MatP	NA	NA	NA	NA
AYM89825.1\|880152_881211_-	porin OmpA	NA	NA	NA	NA
AYM89826.1\|881570_882077_-	cell division inhibitor SulA	NA	NA	NA	NA
AYM89827.1\|882969_885105_-	TIGR01666 family membrane protein	NA	NA	NA	NA
AYM89828.1\|885139_885583_-	YccF domain-containing protein	NA	NA	NA	NA
AYM89829.1\|885784_887839_+	DNA helicase IV	A7KV33	Bacillus_phage	2.5e-16	25.4
AYM89830.1\|888017_888476_-	methylglyoxal synthase	NA	NA	NA	NA
AYM89831.1\|888603_889263_-	DUF2057 family protein	NA	NA	NA	NA
AYM89832.1\|889502_889916_+	CoA-binding protein	NA	NA	NA	NA
AYM89833.1\|890014_890332_-	heat shock protein HspQ	NA	NA	NA	NA
AYM89834.1\|890393_891584_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
AYM89835.1\|891677_891956_+	acylphosphatase	NA	NA	NA	NA
AYM89836.1\|891963_892293_-	sulfurtransferase TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	1.4e-22	51.9
AYM89837.1\|892402_893062_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.4e-48	53.5
AYM93882.1\|893753_894629_+	polyphosphate kinase 2	NA	NA	NA	NA
AYM89838.1\|895179_896424_+	amino acid permease	NA	NA	NA	NA
AYM89839.1\|896997_897960_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AYM89840.1\|898040_898943_+	ABC transporter permease	NA	NA	NA	NA
AYM89841.1\|898939_899734_+	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	3.2e-07	24.1
AYM89842.1\|899898_901497_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AYM89843.1\|901559_902774_-	O-antigen ligase family protein	NA	NA	NA	NA
AYM89844.1\|902793_903963_-	putative lipopolysaccharide heptosyltransferase III	NA	NA	NA	NA
AYM89845.1\|904243_906388_-	formate dehydrogenase subunit alpha	A0A077SK27	Escherichia_phage	2.6e-27	23.2
AYM89846.1\|906723_907176_-	hydrogenase maturation peptidase HycI	NA	NA	NA	NA
AYM89847.1\|907172_907589_-	formate hydrogenlyase maturation protein HycH	NA	NA	NA	NA
AYM89848.1\|907578_908364_-	NADH-quinone oxidoreductase subunit NuoB	NA	NA	NA	NA
AYM89849.1\|908365_908911_-	hydrogenase 4 subunit H	NA	NA	NA	NA
AYM89850.1\|908921_910658_-	hydrogenase large subunit	NA	NA	NA	NA
AYM93883.1\|910654_912238_-	hydrogenase 4 subunit F	NA	NA	NA	NA
AYM89851.1\|912242_912893_-	hydrogenase 4 membrane subunit	NA	NA	NA	NA
AYM89852.1\|912904_914362_-	hydrogenase 4 subunit D	NA	NA	NA	NA
AYM89853.1\|914379_915330_-	hydrogenase 3 membrane subunit	NA	NA	NA	NA
AYM89854.1\|915342_917358_-	hydrogenase 4 subunit B	NA	NA	NA	NA
AYM89855.1\|917360_917981_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
AYM89856.1\|918012_918555_-	electron transport protein HydN	NA	NA	NA	NA
AYM89857.1\|918928_919273_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
AYM89858.1\|919288_919582_+	hydrogenase maturation factor HybG	NA	NA	NA	NA
AYM89859.1\|919721_921788_+	formate hydrogenlyase transcriptional activator FlhA	NA	NA	NA	NA
AYM89860.1\|922129_922648_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
AYM89861.1\|923409_923907_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AYM89862.1\|923934_925416_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AYM89863.1\|925422_925863_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AYM89864.1\|925862_927677_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AYM89865.1\|927640_928693_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AYM89866.1\|928718_930023_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AYM89867.1\|930019_930526_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AYM89868.1\|930528_931875_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_4

1142412 : 1222237

Morganella_phage(16.22%)

integrase,portal,protease,tail,head,coat,lysis,terminase,capsid,tRNA

attL 1127090:1127114|attR 1189878:1189902

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1127090:1127114	attL	NA	NA	NA	NA
AYM90031.1\|1142412_1143516_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
AYM90032.1\|1143611_1144058_-	NUDIX hydrolase	NA	NA	NA	NA
AYM93890.1\|1144067_1144694_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
AYM90033.1\|1144834_1146088_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	8.8e-20	88.9
AYM90034.1\|1146392_1147187_+	DUF2971 domain-containing protein	NA	NA	NA	NA
AYM93891.1\|1147455_1148409_-	HNH endonuclease	A0A1S6KZY3	Salmonella_phage	1.4e-131	72.1
AYM90035.1\|1148693_1149821_-\|integrase	integrase	O21925	Phage_21	1.3e-126	63.0
AYM90036.1\|1149801_1150047_-	excisionase	NA	NA	NA	NA
AYM90037.1\|1150090_1150426_-	hypothetical protein	H9C172	Pectobacterium_phage	1.9e-22	43.0
AYM90038.1\|1150425_1150884_-	hypothetical protein	NA	NA	NA	NA
AYM90039.1\|1150880_1151501_-	3'-5' exoribonuclease	A0A2D1GMH0	Marinobacter_phage	1.1e-12	30.9
AYM90040.1\|1151767_1151998_-	hypothetical protein	NA	NA	NA	NA
AYM90041.1\|1152325_1152970_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	2.2e-38	40.5
AYM90042.1\|1153072_1153282_+	cell division protein	NA	NA	NA	NA
AYM90043.1\|1153309_1153843_+	DNA-binding protein	Q8SBF4	Shigella_phage	4.7e-15	32.1
AYM90044.1\|1153850_1154036_+	hypothetical protein	NA	NA	NA	NA
AYM93892.1\|1154248_1154431_+	DUF4222 domain-containing protein	NA	NA	NA	NA
AYM90045.1\|1155482_1155827_+	hypothetical protein	NA	NA	NA	NA
AYM90046.1\|1155823_1156036_+	hypothetical protein	NA	NA	NA	NA
AYM90047.1\|1156032_1156923_+	DNA cytosine methyltransferase	A0A120HUM8	Bacillus_phage	4.6e-23	26.5
AYM90048.1\|1156919_1157489_+	S-adenosylmethionine-binding protein	Q858E6	Salmonella_phage	6.5e-87	77.3
AYM90049.1\|1157485_1158472_+	DUF968 domain-containing protein	A0A0P0ZD76	Stx2-converting_phage	2.2e-90	48.8
AYM90050.1\|1158502_1159321_+	hypothetical protein	NA	NA	NA	NA
AYM90051.1\|1159396_1159759_+	antitermination protein	A5LH77	Enterobacteria_phage	1.1e-31	55.8
AYM90052.1\|1159836_1160412_-	hypothetical protein	S5FXQ0	Shigella_phage	2.0e-59	60.2
AYM90053.1\|1160419_1161448_-	hypothetical protein	S5FNT5	Shigella_phage	1.5e-113	57.6
AYM90054.1\|1161740_1162769_+	site-specific DNA-methyltransferase	A0A1W6JP25	Morganella_phage	3.3e-121	67.3
AYM93893.1\|1162846_1163089_+\|lysis	lysis protein	NA	NA	NA	NA
AYM93894.1\|1163096_1163576_+	lysozyme	A0A1V0E5Q7	Salmonella_phage	3.7e-51	60.0
AYM90055.1\|1163572_1163911_+	DUF2570 domain-containing protein	NA	NA	NA	NA
AYM90056.1\|1163879_1164110_+	hypothetical protein	Q776X1	Haemophilus_phage	1.4e-08	41.2
AYM90057.1\|1164195_1164507_+	hypothetical protein	NA	NA	NA	NA
AYM90058.1\|1164611_1164962_+	HNH endonuclease	A0A1W6JP27	Morganella_phage	1.2e-46	75.0
AYM90059.1\|1164958_1165159_+	hypothetical protein	NA	NA	NA	NA
AYM90060.1\|1165351_1165849_+\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	5.7e-63	72.0
AYM90061.1\|1165852_1167604_+\|terminase	terminase large subunit	A0A1P8DTK0	Proteus_phage	2.0e-256	74.1
AYM90062.1\|1167751_1168972_+\|portal	phage portal protein	Q8SBI0	Shigella_phage	6.5e-193	80.1
AYM90063.1\|1168964_1169564_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	3.5e-91	83.5
AYM93895.1\|1169582_1170797_+\|capsid	phage major capsid protein	A0A1W6JP20	Morganella_phage	1.1e-179	79.5
AYM90064.1\|1170881_1171199_+\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	9.6e-24	52.4
AYM90065.1\|1171208_1171547_+\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	7.8e-32	63.1
AYM90066.1\|1171543_1171990_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	3.3e-46	64.9
AYM90067.1\|1171986_1172334_+	DUF3168 domain-containing protein	K7P7Q9	Enterobacteria_phage	7.3e-25	47.8
AYM90068.1\|1172391_1173093_+	Ig domain-containing protein	K7PJR9	Enterobacterial_phage	2.9e-44	60.8
AYM90069.1\|1173108_1173528_+\|tail	phage tail protein	A0A1W6JP08	Morganella_phage	1.3e-31	58.0
AYM90070.1\|1173527_1173809_+	DUF4035 domain-containing protein	S4TND7	Salmonella_phage	1.6e-17	57.3
AYM90071.1\|1173843_1177254_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	1.2e-135	44.8
AYM90072.1\|1177253_1177607_+\|tail	phage tail protein	K7P7R1	Enterobacteria_phage	7.4e-25	48.7
AYM90073.1\|1177616_1178369_+\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	1.4e-84	57.4
AYM90074.1\|1179129_1179846_+	peptidase P60	K7P7M8	Enterobacteria_phage	6.9e-70	51.9
AYM90075.1\|1179887_1180568_+	PDZ domain-containing protein	NA	NA	NA	NA
AYM90076.1\|1181354_1184729_+	DUF1983 domain-containing protein	F1C571	Cronobacter_phage	0.0e+00	54.4
AYM90077.1\|1184791_1186477_+	hypothetical protein	A0A2P1CKQ2	Pantoea_phage	1.2e-48	62.6
AYM93896.1\|1186617_1186875_+	hypothetical protein	A0A1V0E5L9	Salmonella_phage	8.3e-18	51.8
AYM90078.1\|1187068_1187272_-	hypothetical protein	NA	NA	NA	NA
AYM90079.1\|1187451_1187604_+	hypothetical protein	Q77Z09	Phage_21	3.8e-18	88.0
AYM90080.1\|1187943_1188462_+	hypothetical protein	NA	NA	NA	NA
AYM90081.1\|1188468_1188840_+	hypothetical protein	NA	NA	NA	NA
AYM90082.1\|1189180_1189711_+	type 1 fimbrial protein	NA	NA	NA	NA
AYM90083.1\|1190499_1191045_+	type 1 fimbrial protein	NA	NA	NA	NA
1189878:1189902	attR	NA	NA	NA	NA
AYM90084.1\|1191342_1192512_+	type 1 fimbrial protein	NA	NA	NA	NA
AYM90085.1\|1193054_1193600_+	type 1 fimbrial protein	NA	NA	NA	NA
AYM90086.1\|1193661_1194366_+	molecular chaperone	NA	NA	NA	NA
AYM90087.1\|1194426_1197006_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
AYM90088.1\|1197556_1197967_+	cell envelope integrity protein TolA	NA	NA	NA	NA
AYM90089.1\|1198921_1199551_+	LysE family translocator	NA	NA	NA	NA
AYM90090.1\|1199608_1200256_-	hypothetical protein	NA	NA	NA	NA
AYM90091.1\|1200595_1201876_-	FAD-binding oxidoreductase	NA	NA	NA	NA
AYM90092.1\|1201886_1203383_-	aldehyde dehydrogenase PuuC	NA	NA	NA	NA
AYM90093.1\|1203398_1203956_-	HTH-type transcriptional regulator PuuR	NA	NA	NA	NA
AYM90094.1\|1203952_1204714_-	gamma-glutamyl-gamma-aminobutyrate hydrolase	NA	NA	NA	NA
AYM90095.1\|1204950_1206369_+	glutamine synthetase	NA	NA	NA	NA
AYM90096.1\|1206496_1207867_+	APC family permease	NA	NA	NA	NA
AYM90097.1\|1207960_1208854_+	drug/metabolite DMT transporter permease	NA	NA	NA	NA
AYM90098.1\|1208938_1209211_+	hypothetical protein	NA	NA	NA	NA
AYM90099.1\|1209602_1210481_+	nucleoside-specific channel-forming protein Tsx	NA	NA	NA	NA
AYM90100.1\|1210534_1210717_-	hypothetical protein	NA	NA	NA	NA
AYM90101.1\|1211162_1212698_-	class A beta-lactamase-related serine hydrolase	NA	NA	NA	NA
AYM90102.1\|1213842_1215063_-	imidazolonepropionase	NA	NA	NA	NA
AYM90103.1\|1215257_1216013_-	histidine utilization repressor	NA	NA	NA	NA
AYM90104.1\|1216196_1217567_+	formimidoylglutamate deiminase	NA	NA	NA	NA
AYM90105.1\|1217566_1218139_+	HutD family protein	NA	NA	NA	NA
AYM90106.1\|1218291_1218501_-	DUF2767 family protein	NA	NA	NA	NA
AYM90107.1\|1218673_1218862_+	hypothetical protein	NA	NA	NA	NA
AYM90108.1\|1219304_1219691_+	ASCH domain-containing protein	NA	NA	NA	NA
AYM90109.1\|1219694_1220300_+	hypothetical protein	NA	NA	NA	NA
AYM90110.1\|1220353_1220602_-	DUF1480 family protein	NA	NA	NA	NA
AYM90111.1\|1221109_1221655_+	SCPU domain-containing protein	NA	NA	NA	NA
AYM90112.1\|1221718_1222237_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_5

3106509 : 3121909

Enterobacteria_phage(36.36%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM91603.1\|3106509_3107247_+	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	6.1e-53	43.2
AYM91604.1\|3109342_3115084_-	DUF1983 domain-containing protein	E4WL39	Enterobacteria_phage	7.3e-287	55.8
AYM91605.1\|3115141_3115795_-\|tail	tail assembly protein	F1C572	Cronobacter_phage	3.5e-44	47.4
AYM91606.1\|3115791_3116502_-	peptidase P60	M9NZD8	Enterobacteria_phage	3.0e-81	56.2
AYM91607.1\|3116504_3117257_-\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	6.5e-87	56.6
AYM91608.1\|3117265_3117607_-\|tail	phage tail protein	A0A0S2SYI2	Pseudomonas_phage	1.5e-14	40.2
AYM93997.1\|3117890_3118802_-\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	5.4e-51	50.7
AYM91609.1\|3119354_3119660_-	hypothetical protein	I6PD79	Cronobacter_phage	1.2e-18	64.1
AYM91610.1\|3119656_3120010_-	hypothetical protein	G8C7Q5	Escherichia_phage	6.1e-27	51.7
AYM91611.1\|3120083_3120746_-\|tail	phage tail protein	I6PBN6	Cronobacter_phage	1.2e-71	63.1
AYM91612.1\|3120851_3121256_-	hypothetical protein	NA	NA	NA	NA
AYM91613.1\|3121543_3121909_-	antitermination protein Q	B6SCY2	Bacteriophage	4.6e-30	55.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP033055

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection