CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP033030	Agrobacterium tumefaciens strain A6 plasmid pTiA6, complete sequence	0 crisprs	NA	2
CP033028	Agrobacterium tumefaciens strain A6 chromosome linear, complete sequence	0 crisprs	DEDDh,csa3,RT	0
CP033027	Agrobacterium tumefaciens strain A6 chromosome circular, complete sequence	0 crisprs	WYL,csa3,cas3,DEDDh	4
CP033029	Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence	0 crisprs	csa3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6051 : 59347

Stx2-converting_phage(33.33%)

protease,integrase,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM71567.1\|6051_7134_-\|integrase	integrase	NA	NA	NA	NA
AYM71568.1\|7135_7537_-	plasmid stabilization protein	NA	NA	NA	NA
AYM71569.1\|7536_7791_-	prevent-host-death protein	NA	NA	NA	NA
AYM71570.1\|8025_8979_+	hypothetical protein	NA	NA	NA	NA
AYM71571.1\|8981_9662_+	transcriptional regulator	A0A1B1IVT7	uncultured_Mediterranean_phage	5.3e-19	30.4
AYM71572.1\|9751_11854_+	ATP-binding protein	NA	NA	NA	NA
AYM71573.1\|11978_13121_+	hypothetical protein	NA	NA	NA	NA
AYM71574.1\|13311_14106_+	hypothetical protein	NA	NA	NA	NA
AYM71575.1\|14195_14780_+\|protease	serine protease	NA	NA	NA	NA
AYM71576.1\|14956_16072_+	molecular chaperone Tir	NA	NA	NA	NA
AYM71577.1\|16080_17406_+	hypothetical protein	NA	NA	NA	NA
AYM71578.1\|17486_19466_-	hypothetical protein	NA	NA	NA	NA
AYM71579.1\|19465_19972_-	hypothetical protein	NA	NA	NA	NA
AYM71580.1\|19968_21135_-	hypothetical protein	NA	NA	NA	NA
AYM71581.1\|21349_22150_-	TIGR02391 family protein	A0A1S5SBU1	Streptococcus_phage	1.1e-28	34.2
AYM71582.1\|22146_24483_-	hypothetical protein	NA	NA	NA	NA
AYM71583.1\|24491_25130_-	hypothetical protein	NA	NA	NA	NA
AYM71584.1\|25345_26281_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
AYM71585.1\|26270_27125_-	hypothetical protein	NA	NA	NA	NA
AYM71586.1\|27847_28270_+	hypothetical protein	NA	NA	NA	NA
AYM71587.1\|28827_29172_+	hypothetical protein	NA	NA	NA	NA
AYM71588.1\|29161_31027_+	VirL protein	NA	NA	NA	NA
AYM71589.1\|31513_31747_+\|transposase	transposase	NA	NA	NA	NA
AYM71590.1\|31730_32084_+\|transposase	transposase	S5VXZ8	Leptospira_phage	4.8e-16	39.8
AYM71591.1\|32125_33232_+\|transposase	transposase IS66	S5VTD3	Leptospira_phage	1.4e-37	37.2
AYM71592.1\|33228_33735_+\|transposase	transposase	A0A218MNE7	uncultured_virus	6.9e-24	35.8
AYM71593.1\|33962_35231_+	P-450 monooxygenase	NA	NA	NA	NA
AYM71594.1\|35299_36475_+	P-450 monooxygenase	NA	NA	NA	NA
AYM71595.1\|36746_37184_+	virulence protein VirK	NA	NA	NA	NA
AYM71596.1\|37232_37940_-\|transposase	transposase	NA	NA	NA	NA
AYM71597.1\|38498_40988_+	two-component VirA-like sensor kinase	Q8QKV7	Ectocarpus_siliculosus_virus	8.1e-09	25.1
AYM71598.1\|41566_42334_+	virulence protein	NA	NA	NA	NA
AYM71599.1\|44036_44756_+	type IV secretion system lytic transglycosylase VirB1	NA	NA	NA	NA
AYM71600.1\|44770_45136_+	type IV secretion system protein VirB2	NA	NA	NA	NA
AYM71601.1\|45228_45462_+	type IV secretion system protein VirB3	NA	NA	NA	NA
AYM71602.1\|45461_47831_+	type IV secretion system protein VirB4	NA	NA	NA	NA
AYM71603.1\|47845_48508_+	type IV secretion system protein VirB5	NA	NA	NA	NA
AYM71604.1\|48604_49492_+	type IV secretion system protein VirB6	NA	NA	NA	NA
AYM71605.1\|49525_49693_+	type IV secretion system protein VirB7	NA	NA	NA	NA
AYM71606.1\|49679_50393_+	type IV secretion system protein VirB8	NA	NA	NA	NA
AYM71607.1\|50389_51271_+	type IV secretion system protein VirB9	NA	NA	NA	NA
AYM71608.1\|51666_52401_+	type IV secretion system protein VirB10	NA	NA	NA	NA
AYM71609.1\|52440_53472_+	type IV secretion system protein VirB11	NA	NA	NA	NA
AYM71610.1\|53603_54407_+	two-component response regulator VirG	NA	NA	NA	NA
AYM71611.1\|54465_54849_+	hypothetical protein	NA	NA	NA	NA
AYM71612.1\|54904_55228_-\|transposase	transposase	NA	NA	NA	NA
AYM71613.1\|55231_56887_-\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	4.2e-102	47.0
AYM71614.1\|56932_57280_-\|transposase	transposase	A0A0P0ZDM8	Stx2-converting_phage	3.2e-36	61.7
AYM71615.1\|57276_57684_-\|transposase	transposase	NA	NA	NA	NA
AYM71616.1\|57747_58728_-\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	2.9e-66	43.3
AYM71617.1\|58679_58958_-\|transposase	transposase	NA	NA	NA	NA
AYM71618.1\|58954_59347_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

81775 : 100960

Lactococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM71643.1\|81775_82612_-\|transposase	transposase	NA	NA	NA	NA
AYM71644.1\|83250_83964_-\|transposase	IS21 family transposase	A0A059NT77	Lactococcus_phage	1.6e-26	33.8
AYM71645.1\|83953_84838_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	4.6e-07	30.5
AYM71646.1\|84951_85077_+	hypothetical protein	NA	NA	NA	NA
AYM71647.1\|85103_85781_+\|transposase	transposase	NA	NA	NA	NA
AYM71648.1\|85981_86107_-	hypothetical protein	NA	NA	NA	NA
AYM71649.1\|86106_86802_-\|transposase	transposase	NA	NA	NA	NA
AYM71650.1\|87406_87502_-	hypothetical protein	NA	NA	NA	NA
AYM71651.1\|87699_88380_+	indole-3-lactate synthase	NA	NA	NA	NA
AYM71652.1\|90099_91500_-	indole acetimide hydrolase	NA	NA	NA	NA
AYM71653.1\|91914_94116_+	tryptophan 2-monooxygenase	NA	NA	NA	NA
AYM71654.1\|94957_95533_+	isopentenyl transferase	NA	NA	NA	NA
AYM71655.1\|96049_96610_+	6a protein	NA	NA	NA	NA
AYM71656.1\|97094_97718_-	6b protein	NA	NA	NA	NA
AYM71657.1\|98596_99673_-	D-vitopine dehydrogenase	NA	NA	NA	NA
AYM71658.1\|100606_100960_-\|transposase	transposase	A0A218MNE7	uncultured_virus	2.6e-22	46.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP033027

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

581877 : 591527

Arthrobacter_phage(20.0%)

tail,capsid,terminase,portal,head,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM66790.1\|581877_583137_+\|terminase	large terminase phage packaging protein	A0A0U4IJ26	Arthrobacter_phage	7.9e-69	40.6
AYM66791.1\|583267_583375_-	hypothetical protein	NA	NA	NA	NA
AYM66792.1\|583587_584226_+	chitinase	R9U4A9	Rhizobium_phage	1.6e-38	43.9
AYM66793.1\|584284_584593_+	stress responsive protein	NA	NA	NA	NA
AYM66794.1\|584779_585946_+\|head,portal	phage head portal protein	W8ECU7	Geobacillus_phage	1.3e-65	39.3
AYM66795.1\|586133_586454_+	hypothetical protein	NA	NA	NA	NA
AYM66796.1\|586495_587086_+\|head,protease	phage prohead protease	A0A0U2BX10	Paracoccus_phage	2.0e-27	43.4
AYM66797.1\|587123_588392_+\|capsid	phage phi-C31 major capsid gp36-like protein	Q3HQT0	Burkholderia_phage	4.2e-78	42.6
AYM66798.1\|588504_589074_+	hypothetical protein	NA	NA	NA	NA
AYM66799.1\|589077_589413_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AYM66800.1\|589409_589805_+	hypothetical protein	NA	NA	NA	NA
AYM66801.1\|589812_591012_-	MFS permease	NA	NA	NA	NA
AYM66802.1\|591119_591527_+\|tail	tail protein	NA	NA	NA	NA

DBSCAN-SWA_2

1105894 : 1139715

Agrobacterium_phage(80.95%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM67301.1\|1105894_1106569_-	thymydilate kinase	M1PSC7	Streptococcus_phage	1.5e-37	42.2
AYM67302.1\|1106706_1107879_-	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)	NA	NA	NA	NA
AYM67303.1\|1107955_1109113_-	rare lipoprotein A	F5B3X9	Synechococcus_phage	9.9e-18	50.0
AYM67304.1\|1109360_1109699_+	hypothetical protein	NA	NA	NA	NA
AYM67305.1\|1109947_1110178_-	hypothetical protein	A0A2L0V109	Agrobacterium_phage	3.7e-33	88.2
AYM67306.1\|1110286_1110397_-	hypothetical protein	NA	NA	NA	NA
AYM67307.1\|1110383_1110716_-	hypothetical protein	A0A223W041	Agrobacterium_phage	2.5e-54	98.2
AYM67308.1\|1110715_1111240_-	hypothetical protein	A0A223W0D2	Agrobacterium_phage	8.0e-84	93.7
AYM67309.1\|1111236_1111989_-	hypothetical protein	A0A223W052	Agrobacterium_phage	5.5e-86	85.6
AYM67310.1\|1112137_1113235_+	hypothetical protein	A0A2L0V108	Agrobacterium_phage	3.9e-197	92.3
AYM67311.1\|1113306_1113768_+	hypothetical protein	A0A223W0C1	Agrobacterium_phage	9.3e-68	87.6
AYM67312.1\|1113830_1114289_+	hypothetical protein	A0A2L0V102	Agrobacterium_phage	1.3e-34	88.9
AYM67313.1\|1114292_1114994_+	hypothetical protein	A0A223W0X8	Agrobacterium_phage	3.2e-120	91.8
AYM67314.1\|1114993_1115620_+	hypothetical protein	A0A223W0Q1	Agrobacterium_phage	1.4e-106	90.9
AYM67315.1\|1115619_1116036_+	hypothetical protein	Q8W6L7	Sinorhizobium_phage	1.4e-51	73.0
AYM67316.1\|1116035_1116548_+	hypothetical protein	NA	NA	NA	NA
AYM67317.1\|1116544_1116823_+	hypothetical protein	A0A223W037	Agrobacterium_phage	8.1e-35	77.2
AYM67318.1\|1116822_1117863_+	hypothetical protein	A0A223W077	Agrobacterium_phage	2.2e-32	80.0
AYM67319.1\|1117862_1118420_+	hypothetical protein	R9TP62	Rhizobium_phage	2.7e-21	46.5
AYM67320.1\|1118440_1120180_+	hypothetical protein	A0A223W033	Agrobacterium_phage	1.4e-289	83.2
AYM67321.1\|1120190_1120436_+	hypothetical protein	A0A2L0V0Z0	Agrobacterium_phage	3.1e-30	85.2
AYM67322.1\|1120432_1120882_+	hypothetical protein	A0A223W031	Agrobacterium_phage	5.6e-78	91.3
AYM67323.1\|1120932_1122090_+	hypothetical protein	A0A223W0C7	Agrobacterium_phage	3.7e-166	81.1
AYM67324.1\|1122094_1123384_+	hypothetical protein	A0A223W044	Agrobacterium_phage	6.6e-172	75.1
AYM67325.1\|1123605_1124103_-	hypothetical protein	NA	NA	NA	NA
AYM67326.1\|1124268_1124415_+	hypothetical protein	NA	NA	NA	NA
AYM67327.1\|1124535_1139715_-	hypothetical protein	A0A223W0B5	Agrobacterium_phage	0.0e+00	88.6

DBSCAN-SWA_3

1143653 : 1166065

Agrobacterium_phage(96.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM67333.1\|1143653_1143848_-	hypothetical protein	A0A2L0V0W4	Agrobacterium_phage	2.2e-26	93.8
AYM67334.1\|1143856_1144834_-	hypothetical protein	A0A223W0D5	Agrobacterium_phage	3.9e-92	77.7
AYM67335.1\|1144849_1147090_-	hypothetical protein	A0A223W028	Agrobacterium_phage	0.0e+00	89.0
AYM67336.1\|1147082_1147583_-	hypothetical protein	NA	NA	NA	NA
AYM67337.1\|1147584_1148013_-	hypothetical protein	A0A223W072	Agrobacterium_phage	8.0e-74	93.7
AYM67338.1\|1148031_1149588_-	hypothetical protein	A0A223W022	Agrobacterium_phage	1.0e-291	95.8
AYM67339.1\|1149587_1150394_-	hypothetical protein	A0A223W023	Agrobacterium_phage	5.7e-137	89.5
AYM67340.1\|1150390_1151017_-	hypothetical protein	A0A223W0C2	Agrobacterium_phage	1.3e-88	80.8
AYM67341.1\|1151013_1151760_-	hypothetical protein	A0A2L0V113	Agrobacterium_phage	1.1e-107	80.7
AYM67342.1\|1151756_1151972_-	hypothetical protein	A0A2L0V110	Agrobacterium_phage	3.8e-32	95.7
AYM67343.1\|1151968_1152319_-	hypothetical protein	A0A2L0V0Z9	Agrobacterium_phage	1.1e-52	89.7
AYM67344.1\|1152315_1152762_-	hypothetical protein	A0A2L0V0Z3	Agrobacterium_phage	5.8e-67	86.8
AYM67345.1\|1152758_1153349_-	hypothetical protein	A0A2L0V0Z4	Agrobacterium_phage	3.2e-73	75.0
AYM67346.1\|1153353_1153734_-	hypothetical protein	A0A2L0V115	Agrobacterium_phage	6.7e-48	87.8
AYM67347.1\|1153730_1154147_-	hypothetical protein	A0A223W0W5	Agrobacterium_phage	1.5e-56	83.9
AYM67348.1\|1154124_1154421_-	hypothetical protein	A0A2L0V104	Agrobacterium_phage	3.5e-44	92.9
AYM67349.1\|1154421_1155060_-	hypothetical protein	A0A2L0V0Y0	Agrobacterium_phage	2.2e-43	92.7
AYM67350.1\|1155056_1155311_-	hypothetical protein	A0A2L0V144	Agrobacterium_phage	2.5e-14	69.6
AYM67351.1\|1155307_1155547_-	hypothetical protein	A0A2L0V139	Agrobacterium_phage	1.3e-33	93.7
AYM67352.1\|1155634_1155940_+	hypothetical protein	A0A2L0V128	Agrobacterium_phage	1.2e-47	97.0
AYM67353.1\|1156104_1156794_+	hypothetical protein	A0A2L0V127	Agrobacterium_phage	5.4e-96	79.1
AYM67354.1\|1157146_1157455_+	hypothetical protein	A0A223W091	Agrobacterium_phage	1.9e-48	85.3
AYM67355.1\|1157451_1157739_+	hypothetical protein	A0A2L0V140	Agrobacterium_phage	3.9e-40	89.5
AYM67356.1\|1157740_1158322_+	hypothetical protein	A0A2L0V136	Agrobacterium_phage	5.4e-105	90.7
AYM67357.1\|1158311_1158530_+	hypothetical protein	A0A2L0V111	Agrobacterium_phage	3.0e-16	61.1
AYM67358.1\|1158471_1158948_+	hypothetical protein	A0A223W054	Agrobacterium_phage	1.2e-62	89.1
AYM67359.1\|1158969_1159587_+	hypothetical protein	A0A2L0V0Y4	Agrobacterium_phage	5.6e-36	49.4
AYM67360.1\|1159583_1159982_+	hypothetical protein	A0A223W0D7	Agrobacterium_phage	5.4e-64	88.6
AYM67361.1\|1159974_1160682_+	hypothetical protein	A0A223W062	Agrobacterium_phage	3.2e-104	76.7
AYM67362.1\|1160678_1161104_+	hypothetical protein	A0A2L0V129	Agrobacterium_phage	2.6e-72	91.5
AYM67363.1\|1161617_1162172_+	hypothetical protein	NA	NA	NA	NA
AYM67364.1\|1162263_1163007_+	hypothetical protein	NA	NA	NA	NA
AYM67365.1\|1163425_1166065_-	hypothetical protein	A0A1V0SHA7	Hokovirus	1.1e-08	33.3

DBSCAN-SWA_4

1356280 : 1364652

uncultured_Mediterranean_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM67546.1\|1356280_1357753_-	lipoprotein	I3PV24	Clostridium_phage	1.4e-11	30.6
AYM67547.1\|1358191_1358845_-	protein-L-isoaspartate O-methyltransferase	A0A1J0MC37	Streptomyces_phage	4.6e-12	36.0
AYM67548.1\|1358841_1359612_-	stationary-phase survival protein	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.2e-24	29.9
AYM67549.1\|1359768_1361052_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.7e-98	46.3
AYM67550.1\|1361156_1361960_-	sec-independent protein translocase protein TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	8.9e-42	41.2
AYM67551.1\|1361956_1362676_-	sec-independent protein translocase protein TatB	NA	NA	NA	NA
AYM67552.1\|1362730_1362937_-	sec-independent protein translocase protein TatA	A0A1B1IVR9	uncultured_Mediterranean_phage	2.1e-08	69.8
AYM67553.1\|1363067_1363847_-	segregation and condensation protein B	A0A1B1IVT7	uncultured_Mediterranean_phage	2.4e-39	47.1
AYM67554.1\|1363803_1364652_-	segregation and condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	2.3e-35	34.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP033030

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP033027

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection