CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP032758	Lactobacillus pentosus strain DSM 20314 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	1	0
CP032757	Lactobacillus pentosus strain DSM 20314 chromosome, complete genome	7 crisprs	csa3,cas9,cas1,cas2,csn2,DinG,cas3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas14j,RT,WYL	0	17	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP032757_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032757_1

159338-160032

TypeII

Consensus_repeat	Method
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	PILER-CR
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CRISPRCasFinder
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CRT

10 spacers

csn2,cas2,cas1,cas9,csa3

The CRISPR arrays of CP032757_1

>merge|CP032757|1|159338-160032|PILER-CR,CRISPRCasFinder,CRT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACAAAATCATTTGTAAAGTTCAATGGCTTGTTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGACGCTAACGATCGCCCAACTAAGGTATGGGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTTACCCGCTTGCATGGTACAATAGGAACATGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGGCAGCGGACGGATGGTCTGCACCTGCGCTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGGAACGATGGGGAAATAAAGGTTCGCGCCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACAAGAGTATCAGGATGCCCTAAAGACTGCTAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTTTAAATTCTCCTTTATCTCTTATCGTTTTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTTGCTGTTAAGCTAACTGGCGACATGAGCAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTTCCCATATTTCCGTTCAAACAACGTAACTGTCTTGAATAGCAGTCATATCAAACAGGTTTAGAACCGAGCCAAACAAAATTTCGATGTTCAGCAAGTCTTGAATAGCAGTCATATCAAATAGAGTTAGAGC

>CP032757|1|1|159338-159900|PILER-CR
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATCATTTGTAAAGTTCAATGGCTTGTT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GACGCTAACGATCGCCCAACTAAGGTATGG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTACCCGCTTGCATGGTACAATAGGAACAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GGCAGCGGACGGATGGTCTGCACCTGCGCT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GGAACGATGGGGAAATAAAGGTTCGCGCC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAGAGTATCAGGATGCCCTAAAGACTGCTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTTAAATTCTCCTTTATCTCTTATCGTTTT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTGCTGTTAAGCTAACTGGCGACATGAGCA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC

>CP032757|1|1|159338-160032|CRISPRCasFinder
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATCATTTGTAAAGTTCAATGGCTTGTT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GACGCTAACGATCGCCCAACTAAGGTATGG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTACCCGCTTGCATGGTACAATAGGAACAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GGCAGCGGACGGATGGTCTGCACCTGCGCT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GGAACGATGGGGAAATAAAGGTTCGCGCC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAGAGTATCAGGATGCCCTAAAGACTGCTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTTAAATTCTCCTTTATCTCTTATCGTTTT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTGCTGTTAAGCTAACTGGCGACATGAGCA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTCCCATATTTCCGTTCAAACAACGTAACT
GTCTTGAATAGCAGTCATATCAAACAGGTTTAGAAC	CGAGCCAAACAAAATTTCGATGTTCAGCAA
GTCTTGAATAGCAGTCATATCAAATAGAGTTAGAGC

>CP032757|1|1|159338-160032|CRT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATCATTTGTAAAGTTCAATGGCTTGTT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GACGCTAACGATCGCCCAACTAAGGTATGG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTACCCGCTTGCATGGTACAATAGGAACAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GGCAGCGGACGGATGGTCTGCACCTGCGCT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GGAACGATGGGGAAATAAAGGTTCGCGCC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAGAGTATCAGGATGCCCTAAAGACTGCTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTTAAATTCTCCTTTATCTCTTATCGTTTT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTGCTGTTAAGCTAACTGGCGACATGAGCA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTCCCATATTTCCGTTCAAACAACGTAACT
GTCTTGAATAGCAGTCATATCAAACAGGTTTAGAAC	CGAGCCAAACAAAATTTCGATGTTCAGCAA
GTCTTGAATAGCAGTCATATCAAATAGAGTTAGAGC

Protein	Signature genes	Signature genes Name	Protein_function
CP032757.1\|AYJ40535.1\|149814_151179_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182694
CP032757.1\|AYJ40542.1\|160273_160516_+\|AbrB-family-transcriptional-regulator	unknown	unknown	unknown
CP032757.1\|AYJ40536.1\|151420_152131_+\|hypothetical-protein	unknown	unknown	unknown
CP032757.1\|AYJ40534.1\|149112_149577_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240033
CP032757.1\|AYJ40543.1\|160669_163414_-\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
CP032757.1\|AYJ40549.1\|168032_169223_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340897
CP032757.1\|AYJ40548.1\|167651_167972_+\|ArsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP032757.1\|AYJ40533.1\|147163_148756_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|214906
CP032757.1\|AYJ40544.1\|163865_164060_-\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
CP032757.1\|AYJ40537.1\|152155_152938_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP032757.1\|AYJ40538.1\|153180_157257_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
CP032757.1\|AYJ40550.1\|169563_170412_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
CP032757.1\|AYJ40540.1\|158333_158639_+\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
CP032757.1\|AYJ40547.1\|166204_167437_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340949
CP032757.1\|AYJ40545.1\|164124_164727_-\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
CP032757.1\|AYJ40539.1\|157450_158356_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
CP032757.1\|AYJ40546.1\|165454_165877_+\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|107228
CP032757.1\|AYJ43442.1\|164836_165310_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP032757.1\|AYJ40532.1\|146447_146792_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
CP032757.1\|AYJ40541.1\|158635_159313_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411

Protein	Function_ID	Function_description	E-value
CP032757.1\|AYJ40535.1\|149814_151179_+\|amino-acid-permease	gnl\|CDD\|182694	PRK10746, PRK10746, putative transport protein YifK; Provisional.	0
CP032757.1\|AYJ40544.1\|163865_164060_-\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	2.21042e-17
CP032757.1\|AYJ40534.1\|149112_149577_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240033	cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	5.37635e-56
CP032757.1\|AYJ40537.1\|152155_152938_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.72486e-28
CP032757.1\|AYJ40548.1\|167651_167972_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	3.32606e-15
CP032757.1\|AYJ40533.1\|147163_148756_+\|DNA-binding-protein	gnl\|CDD\|214906	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. HIRAN is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this protein functions as a DNA-binding domain that probably recognises features associated with damaged DNA or stalled replication forks.	7.21143e-17
CP032757.1\|AYJ40549.1\|168032_169223_+\|MFS-transporter	gnl\|CDD\|340897	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli 2-nitroimidazole transporter (NIMT) and cyanate transport protein CynX, and similar proteins. NIMT, also called YeaN, confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The NIMT/CynX-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.45575e-117
CP032757.1\|AYJ40543.1\|160669_163414_-\|cation-transporting-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
CP032757.1\|AYJ40538.1\|153180_157257_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	7.95798e-122
CP032757.1\|AYJ40550.1\|169563_170412_+\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	4.01478e-122
CP032757.1\|AYJ40540.1\|158333_158639_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.31062e-24
CP032757.1\|AYJ40547.1\|166204_167437_+\|MFS-transporter	gnl\|CDD\|340949	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli multidrug resistance protein MdtG, Streptococcus pneumoniae multidrug resistance efflux pump PmrA, and similar multidrug resistance (MDR) transporters from bacteria. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtG confers resistance to fosfomycin and deoxycholate. PmrA serves as an efflux pump for various substrates and is associated with fluoroquinolone resistance. MdtG-like MDR transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.49329e-139
CP032757.1\|AYJ40545.1\|164124_164727_-\|NADPH-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	2.48536e-30
CP032757.1\|AYJ40539.1\|157450_158356_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	5.99779e-90
CP032757.1\|AYJ40546.1\|165454_165877_+\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|107228	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic membrane.	5.69509e-43
CP032757.1\|AYJ43442.1\|164836_165310_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	5.51965e-07
CP032757.1\|AYJ40532.1\|146447_146792_+\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	5.91269e-39
CP032757.1\|AYJ40541.1\|158635_159313_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	2.65862e-93

>CP032757.1|AYJ40541.1|158635_159313_+|type-II-A-CRISPR-associated-protein-Csn2
MNLTYYPFSPFKINTGQVNVLDLGNSQMYADICQGFRDRTDDLRVSNDNLELQTTSSQCSWYGDLMLSVDLNRLFMKKIQTQIIKLMADEQQVAVLDQSRAMIAKVMEASFLLDLPLDVEEAPGLDQALKFAGIHFPTDLTHNPSAVLEALVQTHVELGLKQCPVMTNVSHYLNPEQWAAFEQQVADLGTTVIVIEYSETNRMEKFKNCCYYYVDEDLVDWRDMN
>CP032757.1|AYJ40540.1|158333_158639_+|CRISPR-associated-endonuclease-Cas2
MRLIVMFDVPMDTSDQRRAYRHFHKALIREGFLMMQYSTYVRVCVNKKAAEFVEKRIAPLAPKGGKVQTMTVTEKQYQAMHYIQGAPSTDVLNSAERTIVI
>CP032757.1|AYJ40539.1|157450_158356_+|type-II-CRISPR-associated-endonuclease-Cas1
MGWRNVIITQHAKVSYSMNRIIVQTSADKHVIPVSDIQLLLVGMTQAVITSAALCALAEAHVKVIFTDHQGEPISEVNDYYPTRRTAKLVRQQVAWPESRIAKLWTKNIGSKILNQIQVIDFVGGNVQPLVDELDKLELNDVTNREAVVANKYFSLLFGEDFYRRDFSPINAALNYGYAVLLSMVNREIVMNGYLTCIGIHHENNENEFNLGSDLMEPFRPIVDQWVSQQRFDEFTPDVKIGLVSLLDLEIGFNGHQTIVSHAITTYVADCLHYLSSETEELKIEVKLPDEVSSHAINSHV
>CP032757.1|AYJ40538.1|153180_157257_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNEPYGVGLDIGTNSVGWTVVDMNGRVRKVKGKTALGARLFKEGATAEDRRGFRTTRRRLKRVKWRLRLLREFFDQPISKIDPNFFARRKYSDISPRDPNYNGLAKTLFNDRTDQEFYHDYPTIYHLRDKLMTSDRKFDIREIYLAIHHIVKYRGNFLRTGPASQYGSASLHLATSFQKLNDLFAQSEESLNFKLVTDEAQLQQIQQILVRTDLSRSEQQRQIWPLMVVLMGATAAEKKRQKDFAKELANALVGLKAKLNVVTLTNVDTTVVKDWTFTLEESQDKLPEIEEQLSEVGQQIMDEVIQLYASVNLAQLIPAGKRFSQHMVEKYNHHEKNLELLKAYIHSQSDSKRGREIRATYDRYIDGVKSKPVTQEMFYKDLMKYVEADATSNHLAAEIKDEIDSEQFMPKLRTKQNGSIPYQVQQYELDQIISHQKKYYPWLGEENPVAERRGKFPYKLDELVGFRVPYYVGPLITKEDQQATSGAGFAWMVRKADGPITPWNFDQKVDRIASATAFIQRMQTTDTYLIGEDVLPARSLIYQRFMVLNELNNMRVEDQKLAPRQKQRLYNQVFKQHQHVSVKNIQQNLMDAGEYRETPKITGLADPKGFNSSLSTYHDFKKILPEAIADEHKRADIEKIILWSTTFEDSAIFKQKLEEVAWLTDAQRKQLSGLRYRGWGQLSHKLLTAFKDDNGRSVMDGLWETSDNFMQLRKQPAIETQIKEANQANLTDADIQDTINELYTSPQNKKAIREVMLVLDDIKNAMHGQTPSWIFIEAARGGGVAGRRTQSRSKQIVEAYKSTAKEIVSEKVQHELNEKIKAKADFNTRLVLYFLQNGRDLYTNEAINIDRLSEYDIDHILPQSLVKDDSLDNRVLTSARINREKNDTFASEKFGRKMGAQWRELHRNGLMTQRKLKHLLMRPDEISKHATDFINRQLVETRQVIKLVEELISSEYPSASIVAVKANLTHQFRQTFNFPKLREVNDYHHAFDASLTAFIGMYLLKQYPKLERFFVYGKFAKQPINLTRFNVIRKLAVAEEPIANIETGEILWDKTADIKCFEKLYNYKRLLVTHEVRENYGAMFDQTIFKATDSRKRLIQKKKGFATETYGGYTGRTLAYLAIVKVVTNKDTQYQVVGIPTTMVTQIQQLEASGLTSKQAVTKAIGAMINENNKKLQSYEVLLPKVRFEQVVRDEVKGHIHRFALGTDTYYHNIQELYLPLTIQRAFLGKRNDTDAQTEQNLLTVFETTLAQVNRYFPLYEMNKFKQILNSAQEKFAALPTKNKTVKNKLVTGKDGVLNNLFIGLHANASLGDLKILGMKTGFGKLQVPGGLKLTDQAEIIYQSPTGLFERKVALKDL
>CP032757.1|AYJ40537.1|152155_152938_+|alpha/beta-hydrolase
MHFITSDHVQLDYTDQGSGQPIVILTGFGGSKDIWHAQIPVLVQAGYRVINLDGRCQGLSEHTVKGLRMSRRAVDAHELIEKLQLKQPILLGNSMGAATWFAYVSLYGDTGIKALIDVDQSPKMINTPDWPYGFKSVQWVDFPDYFRMPLGHSTFKHIDDDTYARVTAVEEQAPFDGKLMFPLLVNHAVQDWRDIIRQLTVPFLIIAGEKSPFFDSDFAAVTAKMAPLGQSVVVPDAGHIVMAEQSAAFNEALLAFLRTL
>CP032757.1|AYJ40536.1|151420_152131_+|hypothetical-protein
MVKQGRYAGVSKQKRLRQLKQRHQAQEQRAIRPGAVGEFLQVRYHLTQAGQQRPVMRQTMQRFMSRWLANAQDLLDEDEQTTWSMTALTKQAMQQFNRQLPWQGYALLDQEMPRWTAFLTKEVPAVPLQERISLVEPLTVETWQDCLTEQLAVNTMLAMTHNNRQQLQQVQTDQIQSLQTSIQTANGVDWEKVAQLLGLTVTEPDPLTSTMMDNKTKQWLERLNKLTSAKFNADVE
>CP032757.1|AYJ40535.1|149814_151179_+|amino-acid-permease
MQRKLSTGQMQMIALGGTIGVGLFMGSSSTIKWTGPSVLIAYIVSGAFLYLIMRALGEMLYVDPNTGSFAKFASEYIHPVFGYLTAWSNIFQFVVVGMSEMIALGGYCRYWWPNLPDWIPGLIAIVFLCAANLISVKMFGTLETWFSLIKVITIILMIIAGLGLIIFGIGNHGQPIGISNLWTHGGFFTGGVKGFVFALAIVLASYQGIELIGVTAGEAENPQSTIVKAIRSTVARILIFYVGAIFVIVSIYPWNQLSQIGSPFVQTFAKIGITAAASIINFVVITASLSGTNSGIYSASRMTYTLAESHQLPKKMTLLNRHGVPFYSVIAIATGILIGVVLNVVLPMFFKDAGEIFVMVYSSSVLPGMVPWVVILVSQIAFRKQNAAKMKNHPFKMPFSPYSNYLTLAFLALTLLFMFINPETRYSILVGVVFLIVMTLIYFRKYAGNKEDNL
>CP032757.1|AYJ40534.1|149112_149577_-|NUDIX-domain-containing-protein
MANYIKEIRALVGHKPIILNTAAGILVNDQQQVLLNLRTDTHNWSLPGGYLEYGETYATACVREYKEDSGIDVEIVDRIAIFDKGETAYPNGDVAQTISALFLVKPVGGQALTHATDETLKLDYFDFDNLPPLLNQQNADMIHAGQQYLQAHPQ
>CP032757.1|AYJ40533.1|147163_148756_+|DNA-binding-protein
MKQIEMGMRITTNQQKIYRVIAVVNQGQQILARPIEPETAPVEVIAATDIVQITEQKPTKATGLSLDTVAVVGQRYIDNIIPVLAELEVGLPVLLQRESNNQYDDNAISVWTCQHEKLGYIARYQNQPYAALMDQGQLLYGTVTELDKKQQHLSVMVWRTTTGESSVEAMQARQQLTTQSTSLGAMPKHLLQTPLGTLVVLCNGRPINYQRVPLSPWLTPDDALQVTKRYLITPDWSQVPANSLVTCQVTATADVVQRWQDDRVSAAVLTNASSFYVVGISAQTRTGLNDNLVDDGSQSAVIYRVGQLKAHEQAGFMVSWAPFGDPRVQPALKLALQFTSQPVVPYQPKTPSQTHATFTQQELAAILVSALPNYQGGQRLEPSVTAITVEKIRQTLGDQAYHALANYQQYVQLAATSTEDVDETLLQALIHAVVYHEITTMHYYQPTVGMVDHVIYPLQLFSTTTKDDESQLIGCLAFYNYAMFEIQQVPLTAIARIAIIADPEHPQMTPTTESPDWLRIFLRGWNDDVE
>CP032757.1|AYJ40532.1|146447_146792_+|transcriptional-regulator
MHTRKIFDCQAGCPVESTLQVIAGKWKSVILYHLLTSGVCRFSELQKRMPDCSRRMLALQLQELEHDQLISKRVYPVIPPKTEYRLTDFGLTLKPVVMEMEKWGRLYNARQVAD
>CP032757.1|AYJ40542.1|160273_160516_+|AbrB-family-transcriptional-regulator
MTVKVQKQGHSLMIPIPANFHVKDNAEYQPVMDDDTGILSFIPVHENIFEQNPDYDFQTALKEMSLPDNGELVDKENVWE
>CP032757.1|AYJ40543.1|160669_163414_-|cation-transporting-P-type-ATPase
MINDDNNQSLSANNEAQNDSQNPPDADNLWQLDESALANKYATDPENGLSTAEAAARLQHNGRNELETKRTSRFVQFIKQFNNSIIYILAAAAVLTFFMHHYSDSIVIGLVIIANAIIGYVQERQAGNALERIREMLISKNFVIRDGKKLEIDARELVVGDLVNLEAGDAVPADMRLISADNFNVQESVLTGETNPVEKQEEPMTDTSLALADRKNMVYASTAVTSGSAVGIVTATAADTEIGHIQQSVSDVKETTTPLMRNLNSLGVGLSIAIVVAAVLLFLLGMVMDTYSLPTLLIAVITMVVGSMPEGLPASTSVVLAMGTRQMTKKNVIVKSLPAVETLGAVDIVNTDKTGTLTKNEMTVTKVVTPEHTFDVTGVGYDDNGGVNFDGHLKLNGQKVDWHQDKAMEWLVKIAGQTTDAELHFENNRWELTGEPTDGALTTLFRKMTGHDPEVDEIESLPFDSAFRFSARLADLDGQRLLMVKGSPATVLRLTDQANQTAYWDNAMDDLTADGLRVVALAYQVVDDDVTDIDPKAISGLHLAGFVGIIDPPREEAATAIAELRQAGVDVKMITGDHPDTAMAIANKLNLAANVKAITGPEIDAMDDQQLQEHIDDYNVFARATPNNKLRIVRAQQANNHVVSMTGDGVNDAPALKQADIGVAMGIKGTEVAKESADMVLADDDFADIVAAVREGRHVFDNIRKTIRFLLPTSFAEGLVVIISILMGHELPLYPTQLLWINMVSALTIQFAFIFEPPEAGIMARGPRNVKSGLLSKLDYFEIGYVSFLISGLGIFAYDYLTALGLPNVVGSTMSLNIIIFGKIFYLFNLRNDHPVISKYFFQNKMAFYIIGILILLQLGIIYLPFMQSVFHTTSINFWYGWGIPIVCGIVVLIVTEIGKFIRFRRMGKDRVLD
>CP032757.1|AYJ40544.1|163865_164060_-|PspC-domain-containing-protein
MKINIHRSATNRVLAGVIGGIAEHFNWNANITRLVFVLLAISPMFPGIIAYLILWLLMKDPVES
>CP032757.1|AYJ40545.1|164124_164727_-|NADPH-dependent-oxidoreductase
MVKIGIILGSTRTQSNGRALFNYLQRNLDQWQTGEAITTAFLDLAHYQLPFFDEPEPPMANPHRQLPANQQQWLDDMAAMDGYIILTPEYNHAMPAGLKNALDFLAFEGLRKPVKLISYSDNMRGGQFGAAALVPVLQRLGMVVLPKPTPVGNVPQTLQADGQVIPDAPLASRYESGLQRAVGEIAYYTTVLTQHPFLTD
>CP032757.1|AYJ43442.1|164836_165310_+|MarR-family-transcriptional-regulator
MMATLIDQLMSELNQFIAQDSVDDQEKQWAMHQTTDPQLQAVLKQLSTTDIKMIAVLGQVGASRAKALPAPTGLSQATISRGLTKLARLGLAVKYRDLTNNKEVLVRLTPTGQQVAQLHTQLDAAIAQQAQAIADDYSDAELERFVTLMKRIREIRI
>CP032757.1|AYJ40546.1|165454_165877_+|Hsp20/alpha-crystallin-family-protein
MANTLMNRNDFGMMDPFERLARSFWTPFENMDQVLKTDISETDDQYQVKVDVPGIDKQDVKLDYRDNVLSIKVQKDSFVDHEDEQQNVVMNERHTGTLQRQYMLPNVAADKISASQADGVLTITLPKTQASDDNGTIEIQ
>CP032757.1|AYJ40547.1|166204_167437_+|MFS-transporter
MDDAERERGPWHRNLIVLWFCTFVAGMAFSEIMPFLSLFVSQLGDFTKAQVTFYSGLAFAADYAISAISAPLWGIIADKKGRKIMLLRASFGMAVAMGLMGLVTNVWQLIALRALQGVFAGFISNAQALVASQAPRKYSGRALSTLITGAVSGQLFGPVIGGFLAQLFSIRNTFFITAGLLLVAFLLSLFFVQEHFKPVEHHRNPGDSRNPLAAFQNPRLIIMMLCSTAIVQFGNASIAPIISLYVRELMHYKGPITVVAGIIAALPGISNIFSAPRLGRYGDHHGSGKVLLFGYIFAVIMYFPQGIVTSVVALGILRFAIGISDGALYPEIQTVLTKNTPVNLTSTIFSYNQSFQAIGNMLGALLGGLVAGWFNYNAVFIMTALLLLINLVLILWLVSGIWKTGDRVAS
>CP032757.1|AYJ40548.1|167651_167972_+|ArsR-family-transcriptional-regulator
MGCSLSFMNIEINQQNQEDQQRVAIFKALADDNRLRIIRVLYQAQREMTCGEVGAQLNISKSTVSYHFKALRLVGLTNTRREAQTKYLSLQRATFDHFLPGFLDSL
>CP032757.1|AYJ40549.1|168032_169223_+|MFS-transporter
MTTTHQHSRYLTLGMILAATNMRLPITMMPGLISSLKRTLGLPSSMAGLLTTIPLLTFAVMSPLIAHWGRRFGNELTIYVMLIFLALGSYLRVIPTIAALFIGTLLVGIGADGGNVLIPAIIKDNFPTKIPVATSQYTLSMLLVGSLGTGISGVLAAHWSLPATMAVLSVIGLINLVVWLPNLKYNHREPVATNDEQDSTVVTHGSVWGRPLAWVVTAFFGLQALVYYSLLTWLPTVFTAHGFSTIVAGNLVTIMQLSGLPMSFIVPTSSGKRRGVLAMIWVVGVGFIAGIGGILMSGTSFGWAALWCILLGLGSGAAFSLAVVFFTQKTTNGFETADLSGMAQSAGYLLAAIGPVLFGWLGGQLGWAPVLWLAIGFSALLALAGSIIFRHDSIYD
>CP032757.1|AYJ40550.1|169563_170412_+|aldo/keto-reductase
MAILTSTYQLANGVQIPKVAFGTWQIPGGDTAYQAVRAALKAGYRHIDTALAYRNEASVGKAIRDSGIPREQIFVTTKLPAETKSYQGALADFDESLKNLGLDYVDLYLVHAPWPWSQVGRVYDEANLEVWQAMEAIYDSGRAKAIGVSNFAVRDLKNVLKQATVAPMVNQIQYYLGFTEPKITQFSEDHDMLVEAYSPLATGGVLDNPQVQAYADKYGVSVAQLALRFVLQNGVLPLPKAVTPAHITANTQLDFTISDADMAALNALPDAAGAYMHNPTQG

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Crispr_ID: CP032757_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032757_2

406762-406898

Orphan

Consensus_repeat	Method
CAATCCGTAGCTAAGTCACGTGCACCTGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032757_2

>merge|CP032757|2|406762-406898|CRISPRCasFinder
TAATCCGTAGCTAAGTCACGTGCACCTGTTTACATCAATCCGTAGCTAAGTCACGTGCACCTGTTTACATCAATCCATAGCAAAACCAACGTGCACTTGTTTTCAACAATCCGTAGCTAAGTCACGTACACCTGTTT

>CP032757|2|2|406762-406898|CRISPRCasFinder
TAATCCGTAGCTAAGTCACGTGCACCTGTTT	ACATCAATCCGTAGCTAAGTCACGTGCACCTGTTTACATCAATCCATAGCAAAACCAACGTGCACTTGTTTTCAA
CAATCCGTAGCTAAGTCACGTACACCTGTTT

Protein	Signature genes	Signature genes Name	Protein_function
CP032757.1\|AYJ40743.1\|405261_406221_+\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|133427
CP032757.1\|AYJ40735.1\|395565_396549_+\|ketopantoate-reductase-family-protein	unknown	unknown	gnl\|CDD\|224805
CP032757.1\|AYJ40738.1\|399823_400117_+\|damage-inducible-protein-J	unknown	unknown	gnl\|CDD\|274102
CP032757.1\|AYJ40748.1\|410722_411091_+\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|377753
CP032757.1\|AYJ40754.1\|416198_417110_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|180448
CP032757.1\|AYJ40739.1\|400568_401384_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
CP032757.1\|AYJ40751.1\|413141_413612_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|366911
CP032757.1\|AYJ40745.1\|407153_407717_-\|peptidase-M10	unknown	unknown	gnl\|CDD\|239796
CP032757.1\|AYJ40740.1\|401396_402488_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224057
CP032757.1\|AYJ40736.1\|396551_397724_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|181219
CP032757.1\|AYJ40741.1\|402819_403092_+\|hypothetical-protein	unknown	unknown	unknown
CP032757.1\|AYJ40746.1\|407910_408579_+\|ribose-5-phosphate-isomerase-A	unknown	unknown	gnl\|CDD\|238692
CP032757.1\|AYJ40742.1\|403288_404605_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
CP032757.1\|AYJ40753.1\|415141_416062_-\|ribonucleoside-hydrolase-RihC	unknown	unknown	gnl\|CDD\|182713
CP032757.1\|AYJ40737.1\|398015_399182_-\|hypothetical-protein	unknown	unknown	unknown
CP032757.1\|AYJ40750.1\|411834_413031_-\|DUF2075-domain-containing-protein	unknown	unknown	gnl\|CDD\|378274
CP032757.1\|AYJ40749.1\|411294_411804_-\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl\|CDD\|176643
CP032757.1\|AYJ40747.1\|408924_410430_+\|copper-oxidase	unknown	unknown	gnl\|CDD\|236810
CP032757.1\|AYJ40752.1\|414219_414828_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit	unknown	unknown	gnl\|CDD\|235777
CP032757.1\|AYJ40744.1\|406323_406593_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237495

Protein	Function_ID	Function_description	E-value
CP032757.1\|AYJ40743.1\|405261_406221_+\|L-lactate-dehydrogenase	gnl\|CDD\|133427	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	6.45273e-143
CP032757.1\|AYJ40735.1\|395565_396549_+\|ketopantoate-reductase-family-protein	gnl\|CDD\|224805	COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism].	9.72683e-72
CP032757.1\|AYJ40738.1\|399823_400117_+\|damage-inducible-protein-J	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	3.82387e-07
CP032757.1\|AYJ40748.1\|410722_411091_+\|DUF1304-domain-containing-protein	gnl\|CDD\|377753	pfam06993, DUF1304, Protein of unknown function (DUF1304). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.	6.24641e-32
CP032757.1\|AYJ40754.1\|416198_417110_+\|oxidoreductase	gnl\|CDD\|180448	PRK06182, PRK06182, short chain dehydrogenase; Validated.	8.9559e-162
CP032757.1\|AYJ40739.1\|400568_401384_+\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.0519e-45
CP032757.1\|AYJ40751.1\|413141_413612_+\|transcriptional-regulator	gnl\|CDD\|366911	pfam02082, Rrf2, Transcriptional regulator. This family is related to pfam001022 and other transcription regulation families (personal obs: Yeats C).	3.06911e-16
CP032757.1\|AYJ40746.1\|407910_408579_+\|ribose-5-phosphate-isomerase-A	gnl\|CDD\|238692	cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.	3.77635e-75
CP032757.1\|AYJ40740.1\|401396_402488_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224057	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.86919e-97
CP032757.1\|AYJ40736.1\|396551_397724_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|181219	PRK08068, PRK08068, transaminase; Reviewed.	0
CP032757.1\|AYJ40745.1\|407153_407717_-\|peptidase-M10	gnl\|CDD\|239796	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.	4.82971e-16
CP032757.1\|AYJ40742.1\|403288_404605_-\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	4.07303e-149
CP032757.1\|AYJ40753.1\|415141_416062_-\|ribonucleoside-hydrolase-RihC	gnl\|CDD\|182713	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional.	0
CP032757.1\|AYJ40750.1\|411834_413031_-\|DUF2075-domain-containing-protein	gnl\|CDD\|378274	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.	4.45235e-130
CP032757.1\|AYJ40749.1\|411294_411804_-\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl\|CDD\|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	5.32858e-47
CP032757.1\|AYJ40747.1\|408924_410430_+\|copper-oxidase	gnl\|CDD\|236810	PRK10965, PRK10965, multicopper oxidase; Provisional.	9.87314e-115
CP032757.1\|AYJ40752.1\|414219_414828_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	2.90493e-27
CP032757.1\|AYJ40744.1\|406323_406593_+\|hypothetical-protein	gnl\|CDD\|237495	PRK13765, PRK13765, ATP-dependent protease Lon; Provisional.	0.00498092

>CP032757.1|AYJ40744.1|406323_406593_+|hypothetical-protein
MRRQLTNRQRWLVIIVATILGVGCALLGQWGQLLGVVAAALALMLLTSGCLTFCHHRGWQPGSGMLLALAMATGYVIIILGSYGYLLRS
>CP032757.1|AYJ40743.1|405261_406221_+|L-lactate-dehydrogenase
MRKYAIIGVGHVGATIAYTLVCKGIADELILIDTNVGKARAEQLDLQDAQARLDSRTIIKINDYHELDDTDILFVTSGNIHALDHASGNRWAEFEYTKQIVQDIAPKVKATKFDGVVIDTMNPCDAITHYFQRATGLSRQQVFGTGTFLDTARMQKVVAEAFDCDPKNISGYVYGEHGESQFSAWSTVQVNGIPITSLVDKYHLDLDALEAAARHGGWAVHSGKGYTSFAIATCAVKLSEAVFANARLACPVSAYSETFGTYVGQPAIIGKDGVESVTTLALTEDEQAKFRNSADTIIEKFHAFDDVLSEQSAQKRQQA
>CP032757.1|AYJ40742.1|403288_404605_-|ammonium-transporter
MNAANSTFLVLSSILVLFITPGLAFFYGGLVSKRNVVNTMLSVFMICGLAILLWLAFGYSLSFSGDIGGVVGNFKALWLHGVDLTALTATKIPNGLYLIFQMMFAIITPALFVGAVVGRIRFKFLLTFIIFWSLLIYYPMVHMVWDNGLLAKLGVIDFAGGTVVHINAGITALVLSAFLGARHKYGKDATQHYNILWVLLGTAILWIGWYGFNAGSALAMNDIAIQAFLTTTVATATSMMTWMVVDMLTKGKPTLVGVCTGTLCGLVGITPACGYVTVSGAFWIGLVATLTSYGFITFIKPRLGIDDALDAFGCHGVSGMVGSIMTGLFASKAVNSSISLNGLFYGGGFKLFGLQLLATAFTIIFTTIACIVIIVLLKRVIRMRVDEQEEELGLDQGEHGEVADYTVQMSHELTNIQHHSDEFRGQLAQLLNKQERFR
>CP032757.1|AYJ40741.1|402819_403092_+|hypothetical-protein
MNLPLPYSVAAYVLLILVLQYIKYKFPDSAFIRFFQKYGWWLIGMCFVVILVLAAGPQFEHPINALDVPIIGVMLVFGYFFIKDNKSKRQ
>CP032757.1|AYJ40740.1|401396_402488_+|ABC-transporter-ATP-binding-protein
MENQYKVELHNVTKEYDLYRSNNDKLKHFFNIGNVEVPRFWSLKGVSLNVKPGEALGIIGINGSGKSTISNIISGIIPQTTGTVDVHGDTSIISIGAGLKWNLTGDENIRLKGLMQGLSIKEIQEVRDDIVDFADIGDFIGQPVKDYSTGMRSRLGFAIAVHINPDIMIIDEALSVGDDTFYQKCVDKIMEFKKQGKTIIFVSHNLRQVELLCDRVAWMHFGDLLEVGDTKETVGHYRKFSKDFKAQTAAYRKKYQVAKKKEQADFDIEAYERQLVEERAKDSDKSKQAISRDVHRTLYKQILPEKMTVTTKIVMWVAILLFIFTGLVNISGHSFTSAIENPTVLLHPVDHYIKSQSVLFNNN
>CP032757.1|AYJ40739.1|400568_401384_+|ABC-transporter-permease
MFTMFKTIGDQFANFKIIRRMAKYDDRATYQSHYLGLAWEFLNPLIQIGIYYLVFGVALKRGDPMPGIPYLPWMVVGIAPWLYMNKTTLDASSSIYRQVGLVSKMKFPVNVLPSIKIYGNLYSFWTMIAFGIFLMFLNGIWPSLAWFQFIYYFGCMIVLMYSLGILNATVSVLIRDWHITLQSVLRMLFYMSGVLFNFTTSNFPAVFVRLLELNPFYYVLNGMRESLLNRGWIWQQPNITLTIVFWLFNLVAILLGTYLYNKFRSNFVDLI
>CP032757.1|AYJ40738.1|399823_400117_+|damage-inducible-protein-J
MTRVSTSIRIDADLKQAASKQLASMGLSMNTYLNMALRQLVLQQAVQFESDEPSWVPNEETEKALVLAHAEGLGLIPDNAPAFDDPKRAIRYLNDEQ
>CP032757.1|AYJ40737.1|398015_399182_-|hypothetical-protein
MSSIIENLQLAAQQVHLINLYQANSEVVYTGYIDRLAPDGVVVNTYDDAGLQDGAVFMRYDVIDEVEMMSEDLDNMAFRLKNATTEGLNSVPQPALAIDDQQPALAQLVDHAHSDHQVVLLVLADNDNYLEGQVQAITDQTITFTTFDKFDFKNKTQQVIPLDSIQILEFCGNELLLESAFVKTAHAHQETVKVSEPDDVDATLNNALAQHQLIAIRSADGSDMFFVGFINTLNADSVLLNLIDMTGQFGGYTLCRRSLIESVTTQSDYLQTMRGFIELNRQYELNVQPVLNDERLFDGTTDLFESILRQAATFNNLVHITTENPMLPAMTGYPGALTNGHFIFYNVDDDNQINHVGTMIELDQVVELSFGYMDAYLLEKRLKSTGNL
>CP032757.1|AYJ40736.1|396551_397724_+|pyridoxal-phosphate-dependent-aminotransferase
MKFEESKILQQLPKQFFANLVRKVNAKAASGADVINLGQGNPDQPTPDFVVKAMQAATADPADHKYSLFRGLPRFKQAAADFYQREYGVQLDPETEIAVLGGSKIGLVELPFALLNPGDTMILPDPGYPDYLSGITLAQVKLELLRLTEQHHFLPDYSQVDPQVADAAKLLYLNYPNNPTGAVATPDFFRDTVDFANEHQIGIVHDFAYGAIGFDGQRPVSFLQTPGAKDVGIEMYTLSKSFNMAGWRVGFAAGNPDMIEALNLIQDHLFVSVFPAIQDAAIAALNSDQQTVRNLVGLYERRRNQFFAAARKIGWEPYPSGGSFYAWMPVPAGYTSESFADLLLDQAAVAVAPGNGFGAGGEGYVRVGLLIDEPRFTEACQRIAKLHLFD
>CP032757.1|AYJ40735.1|395565_396549_+|ketopantoate-reductase-family-protein
MKYAVLGAGAMGLRYGVLLQEAGQHVDFVDTWDQQVQTIQEQGGVYVARDGQNRHLVPIRISTPEDYHGTPDVLIIFTKQMGLAEMLTRSAHFFNADQYVVTAMNGMGHIEKINQYFKPEKVLGGTALIGTVLKQAGDVDFIGAAGAGSMNIANQTEQPDEVTHQIVADLQAANLNPTLTTNFLGTLLAKVIFNSVINTLCTMFQIQMGEFIQSPVAQKLGRQLIDEAFDVCERAGITLLNTREEEWATIDYVSRKTNPLHFPSMYQDISKHRPTEVDYINGYLYDLGVQYHYEAKTHDFLRNLVHLAEFAGTFDVASLKPLTEGEH
>CP032757.1|AYJ40745.1|407153_407717_-|peptidase-M10
MKRKYRAKLGLTTLTIIVGIGLTPIANAKSIATPISRSRWPHAQVTYVIQASASERRVYQAAIRAWNATGQFKFVQGTTAHHQVTLGTSNATTGQYYRLAGITFSTGYPNGYYTKAQVYLLTRNFTRYHYSYSDQVHVAEHELGHTIGLEHSRDRHSVMLADNRYNGISSADSTAVRLRYRLPVGRL
>CP032757.1|AYJ40746.1|407910_408579_+|ribose-5-phosphate-isomerase-A
MTIKQAIVQQALTLIKPQMVVGFGGGTTVGELVKEAANLVNDITVVTPSPTTRQLATVLGYTVVDTAYCDRVDIAFDGCDQLDHHGNALKSGGGIHANEKIIASLADEYWLLTMQDRLVDQFDIKTPLVLEVLPGALSLVMRSVSDLGGQATIRTAENRDGFTLTDSGNLLIDCHFPTYANLPTLNTALATLAGVVETSYFDRLVTNAWLGDAATNTVRALF
>CP032757.1|AYJ40747.1|408924_410430_+|copper-oxidase
MAKKVYTDYFFDEPAYNTHDGGYIPLVTPKVDPQPLAIPPLLQPDRQTDTDDYYTVTAQESETQFLPGKKTKTWGYNAGFLGQTIVFRNGKQTHIDLQNKLPELTTFHWHGLNVPGPITDGGCHAPVYPGQTNHIDFKVHQPAATTWLHAHPCPSTATQVWKGLATMVIIKDDVEDQLPLPRNYGVDDIPMVLQDREFHEDNQFDYRADYDPDGVQGHTALVNGTVNPYFDVTTQRVRLRILDGSNRREWRLHFNDDLEFAQVGSDGGILPAPVYMTKVMMTCAERDEIVVDFGKYQPGDEVTLMTDDTPLCRFRIKAFEPDDTTLPDHLVDIPDEAPTADLPVRKITMDGMDDEVALNGKKFDMERIDARQKVGDVAIWEIRNTNSTENGMVHPFHVHGTQFTVLSRNGGPVYPNEHGLKDTVGVNPGETVRIKVKFELTGVYMYHCHIIEHEDGGMMAQIESYDPEHPQTYHLMDMDTLRNAFAEEQGVKPEDVWMPGM
>CP032757.1|AYJ40748.1|410722_411091_+|DUF1304-domain-containing-protein
MHIAATIMALVVAVEHLFILWLEMFNADSELASKSFGIPRQTLQSPAVQLLFKNQGLYNGFLAVGILYSLFVIPAVASAGATLFFLACVMVAAVYGSITVSRAIVVIQGLPALIAFILMYFV
>CP032757.1|AYJ40749.1|411294_411804_-|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MQLSIPTTDGALAATYSKQAAPAQIYKGHPIISFPVDISDVPAGTHSLAFTFVDHDAIPVGGFTWIHWIAANLPATTTHIPENASQTGAIPMVQGNNSTAGGYVHETDPKVSQHYVGPYPPDKDHRYSFKLFALDTELDLQPGYWLNEFHDAIAGHVLATAKTTVIGRV
>CP032757.1|AYJ40750.1|411834_413031_-|DUF2075-domain-containing-protein
MSSTISAATFKLNEQAALSPAQQSLEQQLLTFIRSHRHQDQSSLFVIHGDAGTGKSAVLAAAFGRLQALSRSTTANDLHATENYLVVNHNEMLKIYKRLAGDDPDLRKKDFQKPTPLINRLTKTHQRADVIFIDEAHLLLTQPDRYNRFDGHNQLTELIQHAHVVVLVFDTRQVLKLKSYWHENDLEPFLAHYPHASYNLDEQFRVTGGPAVVNWIDHFTHGQLLEKPATPDFDLRFFDDGQPMYDLIRQQDHRFGLARMVATADFPYVVNHGTWYVTAGQLKLPWDKVNLTDDPWALRPETLNEVGSIYTIQGFDLNYAGVILGPSVGYDAVHDRVIVRPERYEDQEAFKQRADLGDLEPLKQQIIFNSINVLMKRGRYGLYIYAVDPALRERLLAL
>CP032757.1|AYJ40751.1|413141_413612_+|transcriptional-regulator
MKLDFSVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQLDLPLVEMNLGDLYDLTIPPTISYARFITGPSKTDEQASQSPIAANISETLTDLFTVADRQYRAYYHQFTMADLQQDLKQHGLFLKRERDSES
>CP032757.1|AYJ40752.1|414219_414828_+|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit
MELDKIYQLMDKFEQSSLTSFEYRDQDFEIQMGKKGHNSKATTAASEPAPLPNQPVIDPTPVTPTPIANASAASVVEPTPAATVTSTAAATPTSIAPESTPEPEPAPTPEPAPVQVDPKECVTAPVVGIYYPAHSSEEAPYVKLGDHVSVGQQVGLIQAMQMMRPVVAKQAGTVKAFLVKNGEEVNFGQPLIQLIPDTPDDI
>CP032757.1|AYJ40753.1|415141_416062_-|ribonucleoside-hydrolase-RihC
MSTKIIMDTDPGIDDAAAITIALNHPDLDLQLITTVAGNVTVDKTTLNALKLTRFFNSDVPVAGGAPQPLIKPFEDAVRIHGVSGMPGYDFPTDLADPLPETAVEALRDYIMAAEQPITLVPTGAYTNIALLFKTYPEVLPHIKEIVAMGGALGKGNMTSAAEFNVFTDPHAAEIMYQSGVPITMVGLDVTMKALLTRESIEQLPAFGKTGEMLHALFGHYNDRNQTGVAMHDVNTLFYLLHPEAFTTEAMWIDVQTDGPANGETVGDIRGAYHDGKTNANVCVDIDAAAFNKWFLATVKAIDEQL
>CP032757.1|AYJ40754.1|416198_417110_+|oxidoreductase
MSQPRVILITGASSGIGKATALKLQAQGNIVYGAARRIEKMTDLAAAGVHVLKVDVTDEATLIAAVKTIQVEQGRIDVLINNAGYGSYGALEDVPVTEGEYQFKVNVFGVMRLTQLVLPLMRAQHRGRIINVSSIGGKIYQPLSAWYMGTKHAIEGMSDSLRMEVAPFGIDVVIIEPGGIKTEWAGIAEKKLLAVSGETAYRDQAIKVGAMLSLFDQFASNPGVIAKLMVRAVNDVKPKTRYHAGMGASLSLTGRRWLSDRQFDRMMTSAVNGAAKLSKVTRRKDRRAGSRHYQHGNSTNETN

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Crispr_ID: CP032757_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032757_3

1308309-1308644

Orphan

Consensus_repeat	Method
AGGATCACCCCCGCATACACGGGGAACAG	CRISPRCasFinder
GGATCACCCCCGCATACNCGGGGAACAG	CRT
AGGATCACCCCCGCATACACGGGGAACAGA	PILER-CR

5 spacers

The CRISPR arrays of CP032757_3

>merge|CP032757|3|1308309-1308644|CRISPRCasFinder,CRT,PILER-CR
AGGATCACCCCCGAATACGCGGGGAACAGTCATCTAGTAGATGAATTTGATTGTGGAAATAGGGGATCACCCCTGCATACGCGGGGCACAGATGACAAGACCAACGATGCGAAGTCCAATGTAAGGATCACCCCCGCATACACGGGGAACAGATGCACGAATCGGCGGAACATCCGCCGACAACAGGATCACCCCCGCATACACGGGGAACAGAAAATATGTTGACCGGTATCGGGCGGGTAACAAGGATCACCCCCGCATACACGGGGAACAGGAGCGTTCCTTTTTGGCGCGGGATTGTTATTCGGGATCACCCCCGCATACACGGGGAACAGA

>CP032757|3|3|1308309-1308643|CRISPRCasFinder
AGGATCACCCCCGAATACGCGGGGAACAG	TCATCTAGTAGATGAATTTGATTGTGGAAATAG
GGGATCACCCCTGCATACGCGGGGCACAG	ATGACAAGACCAACGATGCGAAGTCCAATGTA
AGGATCACCCCCGCATACACGGGGAACAG	ATGCACGAATCGGCGGAACATCCGCCGACAAC
AGGATCACCCCCGCATACACGGGGAACAG	AAAATATGTTGACCGGTATCGGGCGGGTAACA
AGGATCACCCCCGCATACACGGGGAACAG	GAGCGTTCCTTTTTGGCGCGGGATTGTTATTC
GGGATCACCCCCGCATACACGGGGAACAG

>CP032757|3|2|1308310-1308643|CRT
GGATCACCCCCGAATACGCGGGGAACAG	TCATCTAGTAGATGAATTTGATTGTGGAAATAGG
GGATCACCCCTGCATACGCGGGGCACAG	ATGACAAGACCAACGATGCGAAGTCCAATGTAA
GGATCACCCCCGCATACACGGGGAACAG	ATGCACGAATCGGCGGAACATCCGCCGACAACA
GGATCACCCCCGCATACACGGGGAACAG	AAAATATGTTGACCGGTATCGGGCGGGTAACAA
GGATCACCCCCGCATACACGGGGAACAG	GAGCGTTCCTTTTTGGCGCGGGATTGTTATTCG
GGATCACCCCCGCATACACGGGGAACAG

>CP032757|3|2|1308432-1308644|PILER-CR
AGGATCACCCCCGCATACACGGGGAACAGA	TGCACGAATCGGCGGAACATCCGCCGACAAC
AGGATCACCCCCGCATACACGGGGAACAGA	AAATATGTTGACCGGTATCGGGCGGGTAACA
AGGATCACCCCCGCATACACGGGGAACAGG	AGCGTTCCTTTTTGGCGCGGGATTGTTATTC
GGGATCACCCCCGCATACACGGGGAACAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP032757.1\|AYJ41507.1\|1315739_1316642_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
CP032757.1\|AYJ41496.1\|1294643_1295693_+\|UPF0104-family-protein	unknown	unknown	gnl\|CDD\|377103
CP032757.1\|AYJ41492.1\|1288848_1289115_+\|phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|237503
CP032757.1\|AYJ41500.1\|1298898_1301004_+\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
CP032757.1\|AYJ41491.1\|1288501_1288699_+\|hypothetical-protein	unknown	unknown	unknown
CP032757.1\|AYJ41506.1\|1313629_1314520_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
CP032757.1\|AYJ41508.1\|1316984_1318310_-\|divalent-metal-cation-transporter-MntH	unknown	unknown	gnl\|CDD\|234815
CP032757.1\|AYJ41503.1\|1310614_1311133_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP032757.1\|AYJ41501.1\|1309010_1309568_-\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|180928
CP032757.1\|AYJ41497.1\|1295763_1297005_+\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
CP032757.1\|AYJ41502.1\|1309894_1310416_+\|hypothetical-protein	unknown	unknown	unknown
CP032757.1\|AYJ41510.1\|1319813_1321205_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|236904
CP032757.1\|AYJ41504.1\|1311247_1312084_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277320
CP032757.1\|AYJ41499.1\|1298505_1298742_+\|DUF1797-family-protein	unknown	unknown	gnl\|CDD\|370128
CP032757.1\|AYJ41498.1\|1297125_1298313_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|235985
CP032757.1\|AYJ41495.1\|1293617_1294640_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
CP032757.1\|AYJ41505.1\|1312476_1313349_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
CP032757.1\|AYJ41509.1\|1318296_1319256_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|366291
CP032757.1\|AYJ41494.1\|1292386_1293565_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340844
CP032757.1\|AYJ41493.1\|1289114_1290845_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006

Protein	Function_ID	Function_description	E-value
CP032757.1\|AYJ41507.1\|1315739_1316642_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.02618e-47
CP032757.1\|AYJ41496.1\|1294643_1295693_+\|UPF0104-family-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	7.59025e-32
CP032757.1\|AYJ41492.1\|1288848_1289115_+\|phosphocarrier-protein-HPr	gnl\|CDD\|237503	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional.	6.29473e-53
CP032757.1\|AYJ41500.1\|1298898_1301004_+\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	1.36471e-166
CP032757.1\|AYJ41493.1\|1289114_1290845_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
CP032757.1\|AYJ41506.1\|1313629_1314520_+\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	1.01773e-31
CP032757.1\|AYJ41508.1\|1316984_1318310_-\|divalent-metal-cation-transporter-MntH	gnl\|CDD\|234815	PRK00701, PRK00701, divalent metal cation transporter MntH.	1.289e-151
CP032757.1\|AYJ41503.1\|1310614_1311133_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.27122e-08
CP032757.1\|AYJ41497.1\|1295763_1297005_+\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	7.08909e-65
CP032757.1\|AYJ41504.1\|1311247_1312084_-\|metallophosphoesterase	gnl\|CDD\|277320	cd00841, MPP_YfcE, Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.56098e-11
CP032757.1\|AYJ41510.1\|1319813_1321205_-\|amino-acid-permease	gnl\|CDD\|236904	PRK11387, PRK11387, S-methylmethionine permease.	0
CP032757.1\|AYJ41501.1\|1309010_1309568_-\|adenine-phosphoribosyltransferase	gnl\|CDD\|180928	PRK07322, PRK07322, adenine phosphoribosyltransferase; Provisional.	1.62864e-81
CP032757.1\|AYJ41499.1\|1298505_1298742_+\|DUF1797-family-protein	gnl\|CDD\|370128	pfam08796, DUF1797, Protein of unknown function (DUF1797). This is a domain of unknown function. It forms a central anti-parallel beta sheet with flanking alpha helical regions.	8.98362e-32
CP032757.1\|AYJ41498.1\|1297125_1298313_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|235985	PRK07309, PRK07309, pyridoxal phosphate-dependent aminotransferase.	0
CP032757.1\|AYJ41495.1\|1293617_1294640_+\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.11313e-28
CP032757.1\|AYJ41505.1\|1312476_1313349_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.37242e-17
CP032757.1\|AYJ41509.1\|1318296_1319256_-\|ferrochelatase	gnl\|CDD\|366291	pfam00762, Ferrochelatase, Ferrochelatase.	4.28949e-118
CP032757.1\|AYJ41494.1\|1292386_1293565_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340844	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (EC 2.4.1.337, UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.	7.41737e-134

>CP032757.1|AYJ41500.1|1298898_1301004_+|LTA-synthase-family-protein
MPKFIKNTVGKVNTTLGFYLLTVVLFWLKTYIAYKSEFTLGVKGPVQEFILFLNPFPTAIVLLGIALYFRGRLKYWIMMIIDAIQTTWLFANILYYREFSDFMSAGVIKSSGAASNNLGKSLGQIIHGTDFLVYADVVLLILLLAFKVIRIDPRPFKIRYAATLTMIGVALFAVDLGMSEHDRSDLLTRTFDNNYIVKYLGLNTYAGYSFYQTEKESATRAQASSSDMKSVLAYLKKNQAGENVKYFGKAKGKNVFVIHLESFQQFLIDYKVDGKEVTPNLNKFYHDKSTLSFDNFYHQVAQGKTSDAEMMMENSLFGLPTGSAMTQYGTSNTFQAAPAILAQKGYTTAAFHGDVASFWNRDNAYKSWGYDYFFYSSYYKEKADYNIGYGLKDKIFFKDSVKYLEQLPQPFYAKLITLTNHYPYELDKKNQSIDKTKTGDSTVDGYVQTAHYLDQAFAEFISYLKKAGLYKNSMIVLYGDHYGISNNHKAAIAQLLGKKSVTSFDLAQFQKVPFMIHSEGIKGGVNHTYGGEIDALPTIFDLLGIKNKGYIQFGTDLLSKQHNQTVAFRNGDFVSPTYTKISGTVYDSKTGKKLTNMTTKQKDTVKQMQNHVTTELSLSDRVIQGDLLRFYTPKGFKKVDKSKYSYKITKTLKSLKEIQAEKNTSLLSKRKGKSSESLYKTDAPELSSSSDSSSSSSSSSD
>CP032757.1|AYJ41499.1|1298505_1298742_+|DUF1797-family-protein
MDKSELSAILKRLEAMRTTDATEVQSRRFEKEGVQRGQVAYDPATSTYTLQEFNPDQTFEFDNIDLVAIELYDLLTDN
>CP032757.1|AYJ41498.1|1297125_1298313_-|pyridoxal-phosphate-dependent-aminotransferase
MTLFRDDLNETISQIQVSTIRQFDEEVSAIPDMVKLTLGEPDFNTPEHVKAAAKKAIDDNFSHYTGMAGLLELRQAAANFQATKYGVHYDAEDQVLVTVGATEAIATALTTICNPGDAIIVPSPIFPAYIPIIQEAHARPLFMDTGVNDFIITPKMVDDFIAAHPDEHFKGIILNYPNNPTGVTYVADEVKALAECFQRHNLWVVSDEIYSELTYGSDHVSIAKYIPDEVILINGLSKSHAMTGWRIGFLFASKEMTAQLKKVHQYYVTAATTIAQKAGVEALTNGIDDALPMRKEYQARRDFVYQTMSKLGFKIARPTGAFYIFAKIPAGFEQDSMAFCKDLARKNQLAIIPGTGFGAEGEGYVRLSYAASMEKLQLAMDRLTAYMQTPANRVD
>CP032757.1|AYJ41497.1|1295763_1297005_+|D-alanyl-D-alanine-carboxypeptidase
MLKLIKHRLATGLVLAAGMVGLLMGMPAVHAANKADEVKAAYIMDAQSGQVVYAQNADQKLPIASLSKLMTLYLVESAIQRGQIKWTDTVPIDKNVRKMATSATLSVMPMPAKEHFTVKELFAATLVGSSNSGAIALGEYVAGSNAKFIKLMNQQAAKWQLDAHFISASGLDNTDLTNYDLKIAGTGEQGQNMVSARAVTTIARHLINDYPDVIKVADQRSVKIHKYTVPTSVQILKGEKYYDYRVPVDGLKTGYTNQAGACLVATFRQNGRRMIATTLGGAWKFTANNNLRLMLKQTERYQQVAPKTIQYQIPGTTTKLQLETDGQTTMWQNTDHPMTQTKIELWPLHRTKPNYLAAGTAVLKLRLTDPLSGTVHNVIYRTPKALTMLGPVQWATQVKKSTTVSAAAFAMAK
>CP032757.1|AYJ41496.1|1294643_1295693_+|UPF0104-family-protein
MTRKNIWSLLIMVALGVGISWYSLRNVKLSNLMDDIVTLNWWWLLVALGCVGLYFGLEAVVVQKFVRHRYRHYTFRNALRVPLAEQLFNGITPFSSGGQPAQIFVMAQSGIDAGRASSVALMKFVVFQAMVVLNFLFSMLIGFHYLAEKLSYLSLYVLLGFLIHFGVIVGLLLVMYWYNFTKRAVKIVLIPVGWFMKAERFAKFEQNISDKIDSFYEESLRMTKDWRMLLEVSIVTFLQLFFYYLIPYFIMRAMGVDDVNLIMVTSLNVLIFLVTSLFPIPGGAGGAEFGFTALFAKFIPTHSKLILAMLIWRILTYYLGLFLGMIAMAMHPEKAEEIPMTEDSQETEL
>CP032757.1|AYJ41495.1|1293617_1294640_+|glycosyltransferase
MLDITMFSKADSVKGQGVGSAYLELMRLLQTHWQDEFNIKVNRYGRSAISHYHTVNPMFYLSTFMPNRGRKIGYVHFLPETLEGSLKLPRPFQVIFNRYLISFYKRMDHIVVVNPTFIPKLEAYHIKRADVTYIPNFVSKREFYEMTKSKQLRLRQQYGYDQHKFMIIGTGQIQDRKGVPDFITLAKRNPDIQFVWAGGFSFGRITDGYQDLKQVVDNPPANLSFPGIVAREKLVDYYNMADLFLLPSYNELFPMSVLEAFSCGTPVLLRDLDLYRAIIDGYYQAATDVDDMQKQIDHLRNNPAGMQFLHDKAVLAAQDYSEERLASVWHDFYLQQAKEG
>CP032757.1|AYJ41494.1|1292386_1293565_+|glycosyltransferase-family-4-protein
MNIGIFTDTYYPQVSGVATSIKVLRNQLERAGHQVYIFTTTDPHVDKNIYERNIFRFTSIPFVSFTDRRIAVRGLFKAYQVAKDLGLDIVHTQTEFSMGMIGKFVAKQLKVPCIHTYHTMYEDYLHYIANGKLLKPYHVKEATRAYCYHLNGIVAPSDRVAKTLTGYGVKAPIRIIPTGIDINQYEQQSTADYRKQLGYQPDTPVLLSLSRLAYEKNIHEVIAALPAILDQVPAAQLLIVGDGPARETLENQVEAAGLSDHVQFTGEIDNDAVYNYYQMADLFVSASNSESQGLTYIEAMAAGLKTVVASSPYTDQLLDDPSLGTTFTSEAGLVKDVVRYLQHPTTFDDPKPRQKKLYQISAEYFGKQVINYYQDVQLAYSESTDKSANISN
>CP032757.1|AYJ41493.1|1289114_1290845_+|phosphoenolpyruvate--protein-phosphotransferase
MAEKVLKGIAASDGIAIAKAYMLVDPDLSFEKTTVSDTDAEVARLHDAFDASKAELKVIKDKAVENLGEEEAEVFEAHITILSDPEMLGQIEGKIKDDKVNAEEALKEVTDTFISMFEAMTDNAYMQERAGDIRDVTKRVLSHLLGVTLPSPALIDSEVIVVAHDLTPSDTAQLDRKYVKGFITDIGGRTSHSAIMSRTLEIPAVVGSESATADIKAGDTVVLDGINGDALVEPTDAEVTDYEQKAKDFVAQKAEWAKLKNEATVSKDGKHFELASNIGTPDDMDGVLDAGSEAIGLFRSEFLYMNSSELPDEETQFQAYKKVVEGMNGKPVIVRTMDIGGDKELPYLPLPDEMNPFLGYRAIRISLDRDDIFRTQLRALLRASHYGQLRIMFPMIATLDEFRKAKAIFEEEKAKLVAAGTPVADDIKLGIMIEIPAAAILADQFAKEVDFFSIGTNDLIQYSFAADRGNEQVSYLYQPYNPSLLRLIKHVIDAAHANGRFTGMCGEVAGDQIAVPLLMGLGLDEFSMSSTSVLKTRSLMKKLDTKEMAKLADKALNECVTNEEVKELVEKNVFDK
>CP032757.1|AYJ41492.1|1288848_1289115_+|phosphocarrier-protein-HPr
MEKKEFHVIADTGIHARPATLLVQSASKFNSEITLQYQDKSVNLKSIMGVMSLGVGKDADVTISAEGADEADAIAALTETMKKEGLSE
>CP032757.1|AYJ41491.1|1288501_1288699_+|hypothetical-protein
MATDYTQLMEALRTGEQETFTVMPEEFMAFHDAYMKYEYRKRVIGTADLDGRIVYHFEKDGTATN
>CP032757.1|AYJ41501.1|1309010_1309568_-|adenine-phosphoribosyltransferase
MQQYQLRLGPLTRNLPLIQIAPNTRIASFVLLGDAELTQYAAQQLAQRLTHTPFDYLVTMESKGIPLAQALSQLTHHPRFIVLRKSVKPYMTHPHTIAVTAITTHTPQQLVLDDADATLLRGKRVVIVDDVISTGGSLEAANRLLQQVGAQVVAQTAILAEGAAGTRTDIEFLAKLPLFDGNSSE
>CP032757.1|AYJ41502.1|1309894_1310416_+|hypothetical-protein
MSTVADFYLHDRPTLLFSLHPEPTQAIIDGSKLLEYRRRFFSEPFQAFVYTSGPNGGIRLYLRCDKGLQLSPDQLALVGALIQHDSPDVTAAYFKDAAQGVALPITAFTTLPNIPLAQLQQQFTNFVAPRSYVFLDRPARQAQLDWLLQQPCQPLQLIDWTRRYAALATLLAR
>CP032757.1|AYJ41503.1|1310614_1311133_-|GNAT-family-N-acetyltransferase
MYFKRATLDDLDQIIDILSDGRNQLAEAGVNQWQGDYPSRKQITADIMQGSAYLFNADDNATVGAVAVVPSPDETYDTANANWLNTTDPYVVIHRVAIHSSHAGHGYATQLFEKIIAHIAAEHPEIKSIRIDTHADNLAMQHLIAKMNFERVGDMVGVYHVDDVCYVYEKLL
>CP032757.1|AYJ41504.1|1311247_1312084_-|metallophosphoesterase
MVKIAVLSDVHGNATALEAVLADARAQQVDEYWTVGDMTVRGPESERVLSLLDTVAPTAYVLGNHEENYQKVLTANPNTFTKPKQVMATVLTAFDRRQLSPEHFERCLNLPMTVTKQVGPLTIRLQHVLPTVASGHALAPTASQANFDEATTGDVDIVIYAHTHTPIMRYGTGGKLILNAGTVGLPTALNPNLRQPRANYLVLTIDASGLQQIDYRSVDFDWKQAITIAHQAHLPYVEFYEQTLRTNAYQYAPSAVAAYNTQHDMAQEARKILLENRR
>CP032757.1|AYJ41505.1|1312476_1313349_+|AraC-family-transcriptional-regulator
MATSFQHEIVTRTQPLSAWIHYHDQHAPSEIAAHLHQGIELSYTISGHIDDFTINGQHFRTSAGQLLVVNSQLIHSIHTHNTPESRALSVIYPYDYVRRLYPKIETEIIAVNDPHQFTSAQQAMYLNLQGHFDQLYLALQRPSAVTNLRLEAETAQILSELLTYFTSAKASTGVMYGKDALAVERIQKISTYVAQHYTEPISLTDVAQQINVTKEYLTRFFKKQMAMTVGQYVNLVRAQHAYEDLLGERGNLTTIASMNGFASTRALNRAFQTVYHQSAAEIYKTKHTWD
>CP032757.1|AYJ41506.1|1313629_1314520_+|alpha/beta-hydrolase
MTEKDLKQAIIELRTAFKTNDDARDAGLPREVAGVERLDDLSYGPDPKWHLLDLYRPTDAPRPLPVIINIHGGGWCYGTKETYQFYGLNWAQRGFAFVNPNYRLAPDAVFPDELDDVDRYIHWVADHADEYGLDRNNVFLLGDSAGGQMAEQYAAILTNPDYRDLFGYQLTDLHFRAVVLNSAAAFPLDEGMVTGAVAAYFTPEAIQKQRNQIEAERYIQANYLPTFICTATEDFIRNNSAKLDGFLTAKGIEHVFKMYGDEKHPRGHVFLVSQKDDIAKQATDDEMAFLNAHLSK
>CP032757.1|AYJ41507.1|1315739_1316642_+|ROK-family-protein
MTNQYLCFDIGGTNLKAGLLDANGGQIQPATSIPMAQDLAAFWQQLFDIADQYVGQIAGIAVSVPGQVDPQTGIVYHGGALPFLDQCPLQQTLAMRYQLPVAAENDGKAAALAENWRGSLQGCQNGLVLVLGTGVGGGLIIHNQLYRGSHFQAGELSMMLAASTAAPIKITGQTGSAVGMISAIAHELQLPDEHDGRQVFAALAADDPKALEMFNAYGHQVAQIILNVQAVMDLNVVAIGGGISAQPSVVPMIQRQYAELLEQLPMIRDTLSQPQIVAAKFHNQANLIGALAALLGMATV
>CP032757.1|AYJ41508.1|1316984_1318310_-|divalent-metal-cation-transporter-MntH
MQPRSHQSLEEINQSVAVPDVHQTAFWRKFLAYSGPGALVAVGYMDPGNWLTSLAGGGQYQYRLLTVLALAIIVAMFMQALAIKLGVVARQDLAQAIAAKLPRPIRYALWILNEVAMMATDMTGVIGTAIALKLLFGLPLLAGILLTIADVLVVLLFLRFGIRRVEFLVLAAIISVGIIFGLEVGRAHVQVGQVMLGLVPNSLIIKNHTALVLSLGILGATIMPHNLYLHSSLAQSRRYDYHDPLQVNEALRFANWDSTVHLIAAFLINALLLVLGGTLFFGHTTALASLQAVFNGLKNPAIVGALASPFMSWLFALALLITGLISSITSTLAGQIVMEGYLHIRLPLWQRRLLTRAVTLIPILIIGFMVGFSDAAFENLIIYAQVALSVALPFTLLPLVALTNNRQLMGSHVNRPAVTWLGYGLAGIITILNVYLVYSLF
>CP032757.1|AYJ41509.1|1318296_1319256_-|ferrochelatase
MHPGLLLVNLGSPASPTTQDVKTYLQEFLSDPSVIEMPAALWQPLLRGIILPTRSWRSATFYQDSWLPAGSPLIVYSEKICEQVQADLPDWDVRLAMTYGQPDIGETLQAMVADGCEQPIVLPLFPQYTQSTHGGIHRQVEATGLPHTFIDHFYDNATYIQLLAAKVWESYQQHDFDAVIFSYHSIPTAMVRHGDPYQKECEATTAAVLAQLPELPADKVVTAYQSKFGPMPWLKPYLRNELMQLVELGKRNVLIATPSFVVDCLETLEEDYVQNYQTFKSSGGDRFELVPPMNTDPQFSQLLADLAVQKWEVRAHATT
>CP032757.1|AYJ41510.1|1319813_1321205_-|amino-acid-permease
MSKQTHLSRQMESRHVLMISLGGVIGTGLFLSSGYTIHQAGPIGTLIAYTIGAVLVYLVMLCLGELSVAMPYTGAFHVYAKKYIGPGTGFTVAILYWLTWTIALGSEFTAAGLIMQTWFPHIATWIWSLVFMVVIFTVNALSVRWFAEAEFWFASIKVVAIVVFIVLGALAMIGLLPLHGHASAPLLTNYTRNGWFPNGFGGVFTTMLTVNFAFSGTELIGITADETKDPAHTIPTAIKTTLWRLIIFFVGSMFVMAALIPYKQAGVTQSPFVLVFKEIGIPYAADLMNFVVLTAIMSAANSGLYASTRMLWSLANEGTIPQVFKKTTKRDVPLVALITSMLGGILALLSSVYAAGSVYLVLVSISGLAVVIVWMAIALSEINFRKAYLKSGQSLDKLAYKTPGYPVVPWLAFILSGLSCLLIWFDPNQRIALYYTVPFVAICYLGYYLSRKFKRHPATDTEK

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Crispr_ID: CP032757_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032757_4

1597587-1597676

TypeI-E

I-C,I-E,II-B

Consensus_repeat	Method
GGATCACCCCCGCATACGCGGGGAACAG	CRISPRCasFinder

1 spacers

cas1,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e

The CRISPR arrays of CP032757_4

>merge|CP032757|4|1597587-1597676|CRISPRCasFinder
GAATCACCCTCGTATGCACGGGGAATAGATGAAGCGGAGCAAGTTCAACTCATGGATTTGAGGATCACCCCCGTATGCACGGGGAATAGT

>CP032757|4|4|1597587-1597676|CRISPRCasFinder
GAATCACCCTCGTATGCACGGGGAATAG	ATGAAGCGGAGCAAGTTCAACTCATGGATTTGA
GGATCACCCCCGTATGCACGGGGAATAGT

Protein	Signature genes	Signature genes Name	Protein_function
CP032757.1\|AYJ41731.1\|1594105_1596070_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
CP032757.1\|AYJ41733.1\|1596834_1597029_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
CP032757.1\|AYJ43467.1\|1590227_1590821_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
CP032757.1\|AYJ41738.1\|1603150_1605898_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
CP032757.1\|AYJ41734.1\|1597065_1597422_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
CP032757.1\|AYJ41736.1\|1599982_1600936_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP032757.1\|AYJ41729.1\|1591397_1592834_+\|helicase-DnaB	unknown	unknown	gnl\|CDD\|226138
CP032757.1\|AYJ41737.1\|1600932_1601832_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
CP032757.1\|AYJ41726.1\|1586733_1589382_+\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
CP032757.1\|AYJ41744.1\|1610862_1612176_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|236882
CP032757.1\|AYJ41741.1\|1608254_1609334_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP032757.1\|AYJ41732.1\|1596291_1596813_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
CP032757.1\|AYJ41735.1\|1597814_1598228_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239217
CP032757.1\|AYJ41730.1\|1592837_1593773_+\|primosomal-protein-DnaI	unknown	unknown	gnl\|CDD\|236353
CP032757.1\|AYJ41743.1\|1610039_1610708_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|378050
CP032757.1\|AYJ41742.1\|1609314_1610040_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187886
CP032757.1\|AYJ41739.1\|1605902_1607654_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
CP032757.1\|AYJ41728.1\|1590860_1591376_+\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|234774
CP032757.1\|AYJ41727.1\|1589393_1590218_+\|DNA-formamidopyrimidine-glycosylase	unknown	unknown	gnl\|CDD\|234899
CP032757.1\|AYJ41740.1\|1607643_1608255_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191

Protein	Function_ID	Function_description	E-value
CP032757.1\|AYJ41731.1\|1594105_1596070_+\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
CP032757.1\|AYJ41733.1\|1596834_1597029_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	1.32915e-16
CP032757.1\|AYJ43467.1\|1590227_1590821_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	1.0591e-80
CP032757.1\|AYJ41738.1\|1603150_1605898_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.83277e-81
CP032757.1\|AYJ41734.1\|1597065_1597422_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	2.65787e-62
CP032757.1\|AYJ41736.1\|1599982_1600936_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	7.99032e-132
CP032757.1\|AYJ41729.1\|1591397_1592834_+\|helicase-DnaB	gnl\|CDD\|226138	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair].	2.47978e-40
CP032757.1\|AYJ41737.1\|1600932_1601832_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	1.07532e-40
CP032757.1\|AYJ41726.1\|1586733_1589382_+\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
CP032757.1\|AYJ41744.1\|1610862_1612176_-\|glycosyltransferase	gnl\|CDD\|236882	PRK11204, PRK11204, N-glycosyltransferase; Provisional.	8.07995e-103
CP032757.1\|AYJ41741.1\|1608254_1609334_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	6.39874e-153
CP032757.1\|AYJ41732.1\|1596291_1596813_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	8.45395e-91
CP032757.1\|AYJ41735.1\|1597814_1598228_-\|NUDIX-hydrolase	gnl\|CDD\|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	2.71926e-17
CP032757.1\|AYJ41730.1\|1592837_1593773_+\|primosomal-protein-DnaI	gnl\|CDD\|236353	PRK08939, PRK08939, primosomal protein DnaI; Reviewed.	3.11957e-169
CP032757.1\|AYJ41743.1\|1610039_1610708_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	8.48715e-72
CP032757.1\|AYJ41742.1\|1609314_1610040_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.77186e-44
CP032757.1\|AYJ41739.1\|1605902_1607654_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.31974e-85
CP032757.1\|AYJ41728.1\|1590860_1591376_+\|transcriptional-repressor-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	9.6044e-88
CP032757.1\|AYJ41727.1\|1589393_1590218_+\|DNA-formamidopyrimidine-glycosylase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	2.06822e-155
CP032757.1\|AYJ41740.1\|1607643_1608255_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.33977e-25

>CP032757.1|AYJ41734.1|1597065_1597422_+|50S-ribosomal-protein-L20
MARVKGGTVTRKRRKRILKLAKGYRGAKHIQFKVAKDQVMKSYQYAFRDRRRRKSDFRRLWIARINAAARINDISYSQLMHGLKVANVDVNRKMLADLAVNDADAFKALVDTAKKALA
>CP032757.1|AYJ41733.1|1596834_1597029_+|50S-ribosomal-protein-L35
MPKQKTNRAAAKRFKVTAKGKIKSANAFTSHRFHGKTKKQRRQLRGTAIIEKPMVKTYHKLLQK
>CP032757.1|AYJ41732.1|1596291_1596813_+|translation-initiation-factor-IF-3
MTIAKDSMVNDGIRAREVRLIASDGEQLGVKSRQEAMQIAEDASLDLVLVAPKAKPPVARIMDYGKYRFEQQKKEREARKKQKVVSIKEVRLSPAIDTNDFNTKLKHAEKFLSKGDKVRVSIRFKGRAITHKDIGRQVLNRMIEATKEFSTVEAYPKMDGRSMFLVLAPKTDK
>CP032757.1|AYJ41731.1|1594105_1596070_+|threonine--tRNA-ligase
MASINVKFPDGAVKQFDAGVTTEAIAKSISPSLAKRSVAGKFNDQIVDYRQPLTTDGSIEIIAADSEDGLNVLRQTAAQVLANAVKQLFPSIHFGSGEGNANGFFFDTDNPDEDGKQVSEDDLEAISDKMAAIIKQDLPIEREVLSKADALALVGDNPYQQDLVNERAAENDGQVVVYKQGDFVDLSDGAQLASTGKVKVFKLLSVAGAYWQGKSSNPMLQRIYGTAFLKQKDLDADLKRRQEARERDHRVIGNELDLFFVDPKVGNGLPYWMPNGATIRRQIERYIIDKEVANGYQHVYTPVLANLDVYKQSGHWDHYREDMFPPMDMGDGEQLELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVALDQIEEEFKKILSLMVEVYEDFDISDYRFRLSYRDPENTEKYFDDDAMWERSQKMLKSAMDDMGLDYFEAEGEAAFYGPKLDVQTKTALGGEETLSTIQLDFLLPERFDLKYVGADGEEHRPVMIHRGLVSTMERFVAYLTEMYKGAFPTWLAPKQVTIIPVNNGAHGAYAETVRRRLAAEGVRVSIDDRNEKMGYKIRESQTKKVPYLLVVGDQEVANGSVSVRKYGEERTESEAVDMFIGAITQEIKRYSRGASK
>CP032757.1|AYJ41730.1|1592837_1593773_+|primosomal-protein-DnaI
MENISETLRTLMNRKNLNHRYEALMTTVYHDPDVRQFLAAHQDELSADALERSGAKLYEFCEEKRKLARHEPTQAPGYQPTLVMSNHLIDIAYQPTPQLQEQQAARALQQRVRSISMPKSIQTADLKSYDQDGDRATALVAALDFIDAYTQAPKRFHRGLYLYGSFGVGKTYLLGGMANELAARGFNTTLIHFPSFAVEMKRSISNNTSADKVDAIKRAPILMIDDIGADASSTWIRDDVLGVILEYRMQEELPTCFSSNFSMQELQDGYLTISQKGDEEPVKAQRIMQRVRYLSSEIEMVGRNRRLNPDG
>CP032757.1|AYJ41729.1|1591397_1592834_+|helicase-DnaB
MPNEEPLTPKSGLVVPQAPALSAAQQAVLAELYLPLIGPLAYSLYAALRSLQSSENELSNRRSHAELLGILNADLPTVLAARRKLEATGLLRSYYQQDELGTLYIYRLQAPQLALQFFADDLLSVLLLDTVGELRYQQLASDFATQPVDLTAAKDVTANILEVFHIDGHKVTTTPRPVQQVRAQLAANEPAEDQSPVLSDDDFDWQLLGQILKQNYVDLKQVASSRQLIVTESRVYGISEIEMAKLISEVASLTTGQFDENQLKLLIARRYERPTTPTRTTTNEATTDQSTKPTTTAANSSKATRQPASTAQLSKAEQQLVDVAKQAAPYDFLAAVKAEKHGFVTSGENRLVHDLISRGVLPNSVINIVIYYLLQNRELAALNRSLIETVANDWQQHGVNTPEAALAYLKQRQRPKTSAPRRKSNARPTRKEVMPKWAQKQQAGEAQPDKPNKQLSEEQRQQLAARLAKLETNSEKED
>CP032757.1|AYJ41728.1|1590860_1591376_+|transcriptional-repressor-NrdR
MQCPHCHHNGSRVVDSRPTDDGRVIRRRRECENCGFRFTTFERVEATPLLVIKKNGAREEFNREKVLRGIIRSAEKRPVSMETMTGVVDDVENKVRSLGENEISSQVIGEYVMEQLADIDEISYIRFASVYRQFKDMHVFLNELQDMMERDKVKLAKPSAKTEHAPKRKKD
>CP032757.1|AYJ43467.1|1590227_1590821_+|dephospho-CoA-kinase
MTKLIGLTGGIATGKSTVSKLLAQYLPIVDADKIAWAVEGPGQPTTQKIAAKFGPDALLADGSLNRPWLGQLVFNDSAALQDLTAITSLPIQYAMFEAIVAAGQSNPTAIILDVPLLYESGWQNICDQVVVVTAPPAIVLKRLMARNQLSKQAAQARIASQLPLAQKAAWADVVIDNGSTVDKTEAAVLKWLETMTV
>CP032757.1|AYJ41727.1|1589393_1590218_+|DNA-formamidopyrimidine-glycosylase
MPELPEVETVRRGLNRLVKGATIADIDVYWPKIINNDVALFKQRLINQTIQTIDRRGKYLLFRFSNGLTMVSHLRMEGKYNVVPRGEARDKHTHVVFHLTDDRDLLYNDTRKFGRMTLVPTGEELSVAGLRTIGPEPVADQLTLAYLTATLEHSKKMIKPLLLDQSKIAGIGNIYADETLWMSKIHPMRPANSLTADEIATLRDNIITEMALAIKGHGTTVHSFSTAFGEAGQFQNHLHVYGREGEPCERCGTMIEKIKVAQRGTHFCPLEQRL
>CP032757.1|AYJ41726.1|1586733_1589382_+|DNA-polymerase-I
MAKKLLLIDGNSVAFRAFFALHNQLERFVNPDGLHTNAIYGFNTMLDHMIKAVDPTDMLVAFDAGKTTFRTAMYDNYKGGRAKTPSEFSEQMPYIKQLLDAYGIKHYELKDYEADDIIGTLAGQADQAGYTTTIVTGDRDLTQLTTERTTVAVTVKGVSEVERYTPEHVTEKLGITPAQIIDMKGLTGDTSDNYPGVTKVGEKTALKLLKQYGSMEGIYENIDAMKASKMKEHLIEDREQAAQAKVLATIKRDAPIEVQLSDLTYNGPDLDQLAAFYQTMDFQSFLKKLHLQSDEPATPIEYTVLTKDNLDELQQFTTNVDFYLEMPTPNYHTSAFAGFAIGADGHWYISRDVELLMQPAVSALLTSDTLTKDVFDMKRTMVGLNRLDIQLGKVDFDLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGKGVKRAIPEDDDVFFSHLARKLAAIADLKPRLLKELADNEQAQLYDDIEKPMATVLAQMEIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEAGEEFNINSPKQLGHILFEEMKLPVIKKTKTGYSTAVDVLEKLAPEAPIVANILQYRQISKIQSTYVVGLLDAIHSTDQKVHTRYLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHDGWQIFSSDYSQIELRVLAHITGDENMQAAFKEGDDIHAATAMRIFNLKSAEDVTPNIRRQAKAVNFGIVYGISDYGLSQNIGISRKQARSFIDAYFKEYPGVKQYMDDIVKSAKEQGYVETISHRRRYLPDINSKSFNQRSFAERTAMNTPIQGSAADIIKIAMIKMQAELKKAGLKATMLLQVHDELIFEAPKEEIPVLEKLVPSVMDSAVKLAVPLKVESHYGDTWYDAK
>CP032757.1|AYJ41735.1|1597814_1598228_-|NUDIX-hydrolase
MVEIIAHVLIPTNRGFLILQRTRKEYGNKNVYPGYWDIPGGLAINNEIPRETAIRECMEETGLKVKISRIIWENSVFDTAKMRVFTTLVYLAHEISADQKIYLNREEHSEFIFVNSRQTLNKVKVVPYLEKVLLQFL
>CP032757.1|AYJ41736.1|1599982_1600936_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MEKQSGAKKPELSELGRVQDRLTFLYLEHVKLDRQDSAIRVSDARGIVFVPAAIISVLMLGPGVDVTHRAMELMGDAGMAVVWVGERGVRQYAHGRALNHSSLLLEAQAKLFSNQRSRLAVARKMYQMRFPNDDVSGLSMQALRGKEGARVRQVYRLQSERTGVKWTRRDYNPDDFEASSPINQALTAAHQALYGLSYSVIMAMGASAGLGFVHTGHDLSFVYDFADLYKAEFSIPVAFNTVAALTEDDNISRNTRLAMRDAFVDGKLLGRMVSDLKAILGVSDDQTEINNLSLWDDRLGLQEFGVQYHEIKVGETQ
>CP032757.1|AYJ41737.1|1600932_1601832_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MIVITLTKVPNALRGDLTKWYQEIQTGVYVGSVSARIRDSLWLRIVKNIGRGEATMVYNANNELGYQFKTTRRDHQVVDYDGIPLMMHLNAAPQAEEHGYSDAAKFHKARVMSQKAQQKRSQRSRKNNKPMVAVDIETTGLDPSKDVIISIGAVKATTDGQVAEFSRLISVTESIPEKISTLTGLTNDILAKQGVPIVEALSGLNAFIGDCAIVGYNFHFDEAFLKQAFISNNLEALRSQPIDLMPIVKRTNAFLDNYRLATVLSAYEIENLKPHHALEDARATLALAQALSKVEKLKI
>CP032757.1|AYJ41738.1|1603150_1605898_+|CRISPR-associated-helicase/endonuclease-Cas3
MAEFSRLAQSLWAKKRSSDGQRLWLPLIVHLKDCENTINWLFNHWLSDGQRQQLAAATSEEDVQKLVKFLGFIHDCGKATPAFQMKPAYNGDNQLDQILIEQLMRSGFKDLDVLNLSSAQRSPHALAGEAILTAYGVDPTIGAIIGGHHGKPESEPPVHQIRDYTANYFQSDNRPELQVEWQQVQRELVEYGLHSAGYQRAAEIPAINQPEAVILTGLLIMADWLASSECFDGDASKPLFPLVNTAQSVENIDVQTRFQRAIMTWRLDDEWVPAPLSQDQDPYQLRWGFHARPVQAAITRALGATTDPGMAIIEAPMGLGKTEIALIAVEQLARMTGRDGVYMGLPTQATTNAMFARVNDWLASVADEQEAHLSIKLMHGKSQFNRTYTALPNASNVNSTDEHHGAVTLNSWFSGKKSILTKFTVGTIDNLLLMGLKQKHLFLRHLGFSGKVVVIDEVHAYDAYMNAYLLRAIEWLGAYHVPIVILSATLPKIKRNQLLKAYLKGKYGRKFHQLLKLAPAGWEDTQAYPLLSVLDGPEIKQVTHFEGQSDQAPLTLAVERTNQDDQDLVATLLAQLDAGGVAGIIVNTVKRAQVLAALIPADVPLMVLHSAFLAPDRAQQEEKLQAAIGKHGQRPAKLVVIGTQVLEQSLDIDFDVLYTDIAPIDLILQRAGRLHRHQTITRPKQFRQPQLKVMGIKDFGDYGDGNEAVYGKYLLMKTDHFLPDKIQLPGDISTLVQRVYDAATDAEVPEIEPAAEKFETNLKAEQQKAGVFQVKAPQLKQGKTLHGWLDRDHTDVVNNQQASAAVRDIQETLEVILVQHTTDGDFLLDGRKLAEVASAEIAQQTLRIPAAITPNITAAITELEDLTRPYHLRWQDDVWLNGALVLPLDQNLTATFNGWQVSYSPQLGLSYSKEE
>CP032757.1|AYJ41739.1|1605902_1607654_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MEKTFNLTTEPWIEVIDAQTNQQVSVSLIELFQNAQNYRQLAGDMRTQDLAVLRLLLAILTTVYTRYDADNQGYEWLTIADDFKVVSVDEDYDSDEIHDDLKKTWQDLYEGGQFTTIVTDYLKQYANRFDLFGDQPFYQVTASEYDAVVPENKSVAHGQKTGKPTGLVAIRQMNRRISESGNSVALFAPKVNETKNDLTHAELARWLIMYQNYTGVTDKTKIKSDETFSNGAGWLYQLNPVYANGRSLFEILMLNLLLVPMDEDVRYPVQRPVWEYTGLADYLKERRRKLVPDNLAALYTTWSRLLHIEWDDQQRPLIFTAGIPMFDNVGALIEPMTLWRQDKKTSQFKPAVASIKYTGKAMWRNFGQYVNVNRRDDIHEAGIVTWLHYLKAQGLVPDDQQLWLASTALLSDGNMSSQMPATEVYDDMQIQADVLFDESSADYWPVRIEDAINITQKIGDGYYHFAATIGQIRNIDAKQFGQRHSAQFYAELNRPFKAWLASLTGNDDREAKINEWKQTLQTITLQAANTMMATSSSRDVRGIVDHDKNNVPRQINVFTANNQLRRLVFTQLKGKQVKVADEK
>CP032757.1|AYJ41740.1|1607643_1608255_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MKNKIQKVTASIIRQLYNHGNLNKGVLASVRHATVLNSPQAQALWPIMMAELDDEMLSRDGRPTAAEVAVYTAVRFYAIQQQGSEVLVYGPANSQTDDTEKGIPLFQALAKLRRNEETRVALDRRMQPLLATTNVASAINALTHLVSMLKAANQQQKIDYARLAQDLYWLQQSYERASQVRLQWGQQYYRPQDATEKPEGKKN
>CP032757.1|AYJ41741.1|1608254_1609334_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTNNLYLDIHVIQTVPSSNINRDDTGAPKTALYGGVSRSRVSSQSWKRAVRQSFQDDTVTVGYRTKKAAQLLKDALQKLTPDLSDDDAWEQVNAVFKAASVKLDKNEETSALFMVSPGQIDQLAQYVKDNADGELDKKAIKAVLKGNQSIDLALFGRMVADNPELNVEAAAQVAHAISTHEVVPEFDYFTALDDLQPDDTTGAAMLGTLEFNSATLYRYANINMNDLIENLGEAAAVDGAREFVKAFALSMPTGKQNTFANKTLPSYVMLTLRTDTPVNLVSGFEDPVTSKQGYVKQSIEKLNAAYKQTLQFVEKPLLNVALGADASAIAVPAENLTALLGQVTTELTKVVKDENGND
>CP032757.1|AYJ41742.1|1609314_1610040_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTVTIRLTAPLQSYGDEANFDRRTSYDYPSKSAIVGLIAAALGYRRTDSRIQTLNQLDYAVRIDQPAEPLTDFQIVEWKRGKRKLTYRDYLQDAVFLAAVGSEDDALIDRIYWALHHPRFQLSLGRRANVPAGPIMTEIALGSNPAQVLQFLSWHASRFYMKKTKSATFVAELIADAALLPNHRSSMVKDNVITFDQRERQYGFRAVAFDRVPLENPYHPDRTAETDHDMMTFLWKEDQR
>CP032757.1|AYJ41743.1|1610039_1610708_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRVEIDRDNRYKTRDLTHLGAYHNWVEQSFPEEIENNQRGRHLWRIDRLNGKDYLLVLSADRPKLEQLEQYGVEGTALTKSYDTWLDHIEAGMVLRFRLTANPTHSIIEPNHPKGRVVPHVTIEQQKQWLADRALRAGFALVARADTPADETEKLAFDVVSHDWPTLHRRKGRSVRLSRVTFEGVLRVQDADTFKQTLTKGLGREKAFGMGLMTVIPTE
>CP032757.1|AYJ41744.1|1610862_1612176_-|glycosyltransferase
MEIMQTLKPFESIWNFVLLLLVSYPILGAFAWFIGVLCYQLVYRHRHKDDVEFKELAPAEQPFITIMIPAHNEEVMIEHTINYLMNNLNYQNYEVLVTDDGSTDETPAILERLQTVYDNLRVITIKKNQGKAHAFNVGVSFARGEFILSNDADSIPEPDALWKYMSYFMGEEHANTAAVTANMDVQNRSTIIAKSQTVEFSSIVGVIKRSQVSALGNMYAYSGANTMYRRDALIDVGLFRQDRATEDISIAWDHQLNGWTTVFSPDILFYMNVPENLDALYHQRKRWAKGGTEVLLTNFKRVASHPGKYLKQWAFITDQTLSIIWSLFFFVSTLIFLISLVTFFFTGNYERVYHMFCMAFIFVTFEMFAGVLQLLSALIVDDRGRKFKYLIFMPLYMLIYWQVNALALVTTLIPAVKTILGYGSGTWVSPVRKHHTE

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Crispr_ID: CP032757_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032757_5

1598257-1598530

TypeI-E

NA:I-C,I-E,II-B

Consensus_repeat	Method
GGATCACCCCCGCATACGCGGGGAACAG	CRISPRCasFinder
GGGATCACCCCCGTATGCACGGGGAATAG	PILER-CR

4 spacers

cas1,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e

The CRISPR arrays of CP032757_5

>merge|CP032757|5|1598257-1598530|CRISPRCasFinder,PILER-CR
AAATCACCCCCGCATACACGGGGAATAGTATGAGTGGCTGATTGTAAACAATGAATTAGAGGGGATCACCCCCGTATGCACGGGGAATAGCCTGTCGTCATTGATGTAACGGATGGTACCGAGGGATCACCCCCGTATGCACGGGGAATAGCGAACCGGGTACTTGTGTTATTAGGGCTTGTTGGGATCACCCCCGTATGCACGGGGAATAGCGAACCGGGTACTTGTGTTATTAGGGCTTGTTGGGATCACCCCCGTATGCACGGGGAATAGA

>CP032757|5|5|1598257-1598530|CRISPRCasFinder
AAATCACCCCCGCATACACGGGGAATAG	TATGAGTGGCTGATTGTAAACAATGAATTAGAGG
GGATCACCCCCGTATGCACGGGGAATAG	CCTGTCGTCATTGATGTAACGGATGGTACCGAG
GGATCACCCCCGTATGCACGGGGAATAG	CGAACCGGGTACTTGTGTTATTAGGGCTTGTTG
GGATCACCCCCGTATGCACGGGGAATAG	CGAACCGGGTACTTGTGTTATTAGGGCTTGTTG
GGATCACCCCCGTATGCACGGGGAATAGA

>CP032757|5|3|1598318-1598529|PILER-CR
GGGATCACCCCCGTATGCACGGGGAATAG	CCTGTCGTCATTGATGTAACGGATGGTACCGA
GGGATCACCCCCGTATGCACGGGGAATAG	CGAACCGGGTACTTGTGTTATTAGGGCTTGTT
GGGATCACCCCCGTATGCACGGGGAATAG	CGAACCGGGTACTTGTGTTATTAGGGCTTGTT
GGGATCACCCCCGTATGCACGGGGAATAG

Protein	Signature genes	Signature genes Name	Protein_function
CP032757.1\|AYJ41731.1\|1594105_1596070_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
CP032757.1\|AYJ41733.1\|1596834_1597029_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
CP032757.1\|AYJ43467.1\|1590227_1590821_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
CP032757.1\|AYJ41738.1\|1603150_1605898_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
CP032757.1\|AYJ41734.1\|1597065_1597422_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
CP032757.1\|AYJ41736.1\|1599982_1600936_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP032757.1\|AYJ41729.1\|1591397_1592834_+\|helicase-DnaB	unknown	unknown	gnl\|CDD\|226138
CP032757.1\|AYJ41737.1\|1600932_1601832_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
CP032757.1\|AYJ41730.1\|1592837_1593773_+\|primosomal-protein-DnaI	unknown	unknown	gnl\|CDD\|236353
CP032757.1\|AYJ41744.1\|1610862_1612176_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|236882
CP032757.1\|AYJ41745.1\|1612179_1612662_-\|hypothetical-protein	unknown	unknown	unknown
CP032757.1\|AYJ41741.1\|1608254_1609334_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP032757.1\|AYJ41732.1\|1596291_1596813_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
CP032757.1\|AYJ41735.1\|1597814_1598228_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239217
CP032757.1\|AYJ41742.1\|1609314_1610040_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187886
CP032757.1\|AYJ41743.1\|1610039_1610708_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|378050
CP032757.1\|AYJ41739.1\|1605902_1607654_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
CP032757.1\|AYJ41728.1\|1590860_1591376_+\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|234774
CP032757.1\|AYJ41727.1\|1589393_1590218_+\|DNA-formamidopyrimidine-glycosylase	unknown	unknown	gnl\|CDD\|234899
CP032757.1\|AYJ41740.1\|1607643_1608255_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191

Protein	Function_ID	Function_description	E-value
CP032757.1\|AYJ41731.1\|1594105_1596070_+\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
CP032757.1\|AYJ41733.1\|1596834_1597029_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	1.32915e-16
CP032757.1\|AYJ43467.1\|1590227_1590821_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	1.0591e-80
CP032757.1\|AYJ41738.1\|1603150_1605898_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.83277e-81
CP032757.1\|AYJ41734.1\|1597065_1597422_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	2.65787e-62
CP032757.1\|AYJ41736.1\|1599982_1600936_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	7.99032e-132
CP032757.1\|AYJ41729.1\|1591397_1592834_+\|helicase-DnaB	gnl\|CDD\|226138	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair].	2.47978e-40
CP032757.1\|AYJ41737.1\|1600932_1601832_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	1.07532e-40
CP032757.1\|AYJ41730.1\|1592837_1593773_+\|primosomal-protein-DnaI	gnl\|CDD\|236353	PRK08939, PRK08939, primosomal protein DnaI; Reviewed.	3.11957e-169
CP032757.1\|AYJ41744.1\|1610862_1612176_-\|glycosyltransferase	gnl\|CDD\|236882	PRK11204, PRK11204, N-glycosyltransferase; Provisional.	8.07995e-103
CP032757.1\|AYJ41741.1\|1608254_1609334_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	6.39874e-153
CP032757.1\|AYJ41732.1\|1596291_1596813_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	8.45395e-91
CP032757.1\|AYJ41735.1\|1597814_1598228_-\|NUDIX-hydrolase	gnl\|CDD\|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	2.71926e-17
CP032757.1\|AYJ41742.1\|1609314_1610040_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.77186e-44
CP032757.1\|AYJ41743.1\|1610039_1610708_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	8.48715e-72
CP032757.1\|AYJ41739.1\|1605902_1607654_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.31974e-85
CP032757.1\|AYJ41728.1\|1590860_1591376_+\|transcriptional-repressor-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	9.6044e-88
CP032757.1\|AYJ41727.1\|1589393_1590218_+\|DNA-formamidopyrimidine-glycosylase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	2.06822e-155
CP032757.1\|AYJ41740.1\|1607643_1608255_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.33977e-25

>CP032757.1|AYJ41735.1|1597814_1598228_-|NUDIX-hydrolase
MVEIIAHVLIPTNRGFLILQRTRKEYGNKNVYPGYWDIPGGLAINNEIPRETAIRECMEETGLKVKISRIIWENSVFDTAKMRVFTTLVYLAHEISADQKIYLNREEHSEFIFVNSRQTLNKVKVVPYLEKVLLQFL
>CP032757.1|AYJ41734.1|1597065_1597422_+|50S-ribosomal-protein-L20
MARVKGGTVTRKRRKRILKLAKGYRGAKHIQFKVAKDQVMKSYQYAFRDRRRRKSDFRRLWIARINAAARINDISYSQLMHGLKVANVDVNRKMLADLAVNDADAFKALVDTAKKALA
>CP032757.1|AYJ41733.1|1596834_1597029_+|50S-ribosomal-protein-L35
MPKQKTNRAAAKRFKVTAKGKIKSANAFTSHRFHGKTKKQRRQLRGTAIIEKPMVKTYHKLLQK
>CP032757.1|AYJ41732.1|1596291_1596813_+|translation-initiation-factor-IF-3
MTIAKDSMVNDGIRAREVRLIASDGEQLGVKSRQEAMQIAEDASLDLVLVAPKAKPPVARIMDYGKYRFEQQKKEREARKKQKVVSIKEVRLSPAIDTNDFNTKLKHAEKFLSKGDKVRVSIRFKGRAITHKDIGRQVLNRMIEATKEFSTVEAYPKMDGRSMFLVLAPKTDK
>CP032757.1|AYJ41731.1|1594105_1596070_+|threonine--tRNA-ligase
MASINVKFPDGAVKQFDAGVTTEAIAKSISPSLAKRSVAGKFNDQIVDYRQPLTTDGSIEIIAADSEDGLNVLRQTAAQVLANAVKQLFPSIHFGSGEGNANGFFFDTDNPDEDGKQVSEDDLEAISDKMAAIIKQDLPIEREVLSKADALALVGDNPYQQDLVNERAAENDGQVVVYKQGDFVDLSDGAQLASTGKVKVFKLLSVAGAYWQGKSSNPMLQRIYGTAFLKQKDLDADLKRRQEARERDHRVIGNELDLFFVDPKVGNGLPYWMPNGATIRRQIERYIIDKEVANGYQHVYTPVLANLDVYKQSGHWDHYREDMFPPMDMGDGEQLELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVALDQIEEEFKKILSLMVEVYEDFDISDYRFRLSYRDPENTEKYFDDDAMWERSQKMLKSAMDDMGLDYFEAEGEAAFYGPKLDVQTKTALGGEETLSTIQLDFLLPERFDLKYVGADGEEHRPVMIHRGLVSTMERFVAYLTEMYKGAFPTWLAPKQVTIIPVNNGAHGAYAETVRRRLAAEGVRVSIDDRNEKMGYKIRESQTKKVPYLLVVGDQEVANGSVSVRKYGEERTESEAVDMFIGAITQEIKRYSRGASK
>CP032757.1|AYJ41730.1|1592837_1593773_+|primosomal-protein-DnaI
MENISETLRTLMNRKNLNHRYEALMTTVYHDPDVRQFLAAHQDELSADALERSGAKLYEFCEEKRKLARHEPTQAPGYQPTLVMSNHLIDIAYQPTPQLQEQQAARALQQRVRSISMPKSIQTADLKSYDQDGDRATALVAALDFIDAYTQAPKRFHRGLYLYGSFGVGKTYLLGGMANELAARGFNTTLIHFPSFAVEMKRSISNNTSADKVDAIKRAPILMIDDIGADASSTWIRDDVLGVILEYRMQEELPTCFSSNFSMQELQDGYLTISQKGDEEPVKAQRIMQRVRYLSSEIEMVGRNRRLNPDG
>CP032757.1|AYJ41729.1|1591397_1592834_+|helicase-DnaB
MPNEEPLTPKSGLVVPQAPALSAAQQAVLAELYLPLIGPLAYSLYAALRSLQSSENELSNRRSHAELLGILNADLPTVLAARRKLEATGLLRSYYQQDELGTLYIYRLQAPQLALQFFADDLLSVLLLDTVGELRYQQLASDFATQPVDLTAAKDVTANILEVFHIDGHKVTTTPRPVQQVRAQLAANEPAEDQSPVLSDDDFDWQLLGQILKQNYVDLKQVASSRQLIVTESRVYGISEIEMAKLISEVASLTTGQFDENQLKLLIARRYERPTTPTRTTTNEATTDQSTKPTTTAANSSKATRQPASTAQLSKAEQQLVDVAKQAAPYDFLAAVKAEKHGFVTSGENRLVHDLISRGVLPNSVINIVIYYLLQNRELAALNRSLIETVANDWQQHGVNTPEAALAYLKQRQRPKTSAPRRKSNARPTRKEVMPKWAQKQQAGEAQPDKPNKQLSEEQRQQLAARLAKLETNSEKED
>CP032757.1|AYJ41728.1|1590860_1591376_+|transcriptional-repressor-NrdR
MQCPHCHHNGSRVVDSRPTDDGRVIRRRRECENCGFRFTTFERVEATPLLVIKKNGAREEFNREKVLRGIIRSAEKRPVSMETMTGVVDDVENKVRSLGENEISSQVIGEYVMEQLADIDEISYIRFASVYRQFKDMHVFLNELQDMMERDKVKLAKPSAKTEHAPKRKKD
>CP032757.1|AYJ43467.1|1590227_1590821_+|dephospho-CoA-kinase
MTKLIGLTGGIATGKSTVSKLLAQYLPIVDADKIAWAVEGPGQPTTQKIAAKFGPDALLADGSLNRPWLGQLVFNDSAALQDLTAITSLPIQYAMFEAIVAAGQSNPTAIILDVPLLYESGWQNICDQVVVVTAPPAIVLKRLMARNQLSKQAAQARIASQLPLAQKAAWADVVIDNGSTVDKTEAAVLKWLETMTV
>CP032757.1|AYJ41727.1|1589393_1590218_+|DNA-formamidopyrimidine-glycosylase
MPELPEVETVRRGLNRLVKGATIADIDVYWPKIINNDVALFKQRLINQTIQTIDRRGKYLLFRFSNGLTMVSHLRMEGKYNVVPRGEARDKHTHVVFHLTDDRDLLYNDTRKFGRMTLVPTGEELSVAGLRTIGPEPVADQLTLAYLTATLEHSKKMIKPLLLDQSKIAGIGNIYADETLWMSKIHPMRPANSLTADEIATLRDNIITEMALAIKGHGTTVHSFSTAFGEAGQFQNHLHVYGREGEPCERCGTMIEKIKVAQRGTHFCPLEQRL
>CP032757.1|AYJ41736.1|1599982_1600936_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MEKQSGAKKPELSELGRVQDRLTFLYLEHVKLDRQDSAIRVSDARGIVFVPAAIISVLMLGPGVDVTHRAMELMGDAGMAVVWVGERGVRQYAHGRALNHSSLLLEAQAKLFSNQRSRLAVARKMYQMRFPNDDVSGLSMQALRGKEGARVRQVYRLQSERTGVKWTRRDYNPDDFEASSPINQALTAAHQALYGLSYSVIMAMGASAGLGFVHTGHDLSFVYDFADLYKAEFSIPVAFNTVAALTEDDNISRNTRLAMRDAFVDGKLLGRMVSDLKAILGVSDDQTEINNLSLWDDRLGLQEFGVQYHEIKVGETQ
>CP032757.1|AYJ41737.1|1600932_1601832_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MIVITLTKVPNALRGDLTKWYQEIQTGVYVGSVSARIRDSLWLRIVKNIGRGEATMVYNANNELGYQFKTTRRDHQVVDYDGIPLMMHLNAAPQAEEHGYSDAAKFHKARVMSQKAQQKRSQRSRKNNKPMVAVDIETTGLDPSKDVIISIGAVKATTDGQVAEFSRLISVTESIPEKISTLTGLTNDILAKQGVPIVEALSGLNAFIGDCAIVGYNFHFDEAFLKQAFISNNLEALRSQPIDLMPIVKRTNAFLDNYRLATVLSAYEIENLKPHHALEDARATLALAQALSKVEKLKI
>CP032757.1|AYJ41738.1|1603150_1605898_+|CRISPR-associated-helicase/endonuclease-Cas3
MAEFSRLAQSLWAKKRSSDGQRLWLPLIVHLKDCENTINWLFNHWLSDGQRQQLAAATSEEDVQKLVKFLGFIHDCGKATPAFQMKPAYNGDNQLDQILIEQLMRSGFKDLDVLNLSSAQRSPHALAGEAILTAYGVDPTIGAIIGGHHGKPESEPPVHQIRDYTANYFQSDNRPELQVEWQQVQRELVEYGLHSAGYQRAAEIPAINQPEAVILTGLLIMADWLASSECFDGDASKPLFPLVNTAQSVENIDVQTRFQRAIMTWRLDDEWVPAPLSQDQDPYQLRWGFHARPVQAAITRALGATTDPGMAIIEAPMGLGKTEIALIAVEQLARMTGRDGVYMGLPTQATTNAMFARVNDWLASVADEQEAHLSIKLMHGKSQFNRTYTALPNASNVNSTDEHHGAVTLNSWFSGKKSILTKFTVGTIDNLLLMGLKQKHLFLRHLGFSGKVVVIDEVHAYDAYMNAYLLRAIEWLGAYHVPIVILSATLPKIKRNQLLKAYLKGKYGRKFHQLLKLAPAGWEDTQAYPLLSVLDGPEIKQVTHFEGQSDQAPLTLAVERTNQDDQDLVATLLAQLDAGGVAGIIVNTVKRAQVLAALIPADVPLMVLHSAFLAPDRAQQEEKLQAAIGKHGQRPAKLVVIGTQVLEQSLDIDFDVLYTDIAPIDLILQRAGRLHRHQTITRPKQFRQPQLKVMGIKDFGDYGDGNEAVYGKYLLMKTDHFLPDKIQLPGDISTLVQRVYDAATDAEVPEIEPAAEKFETNLKAEQQKAGVFQVKAPQLKQGKTLHGWLDRDHTDVVNNQQASAAVRDIQETLEVILVQHTTDGDFLLDGRKLAEVASAEIAQQTLRIPAAITPNITAAITELEDLTRPYHLRWQDDVWLNGALVLPLDQNLTATFNGWQVSYSPQLGLSYSKEE
>CP032757.1|AYJ41739.1|1605902_1607654_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MEKTFNLTTEPWIEVIDAQTNQQVSVSLIELFQNAQNYRQLAGDMRTQDLAVLRLLLAILTTVYTRYDADNQGYEWLTIADDFKVVSVDEDYDSDEIHDDLKKTWQDLYEGGQFTTIVTDYLKQYANRFDLFGDQPFYQVTASEYDAVVPENKSVAHGQKTGKPTGLVAIRQMNRRISESGNSVALFAPKVNETKNDLTHAELARWLIMYQNYTGVTDKTKIKSDETFSNGAGWLYQLNPVYANGRSLFEILMLNLLLVPMDEDVRYPVQRPVWEYTGLADYLKERRRKLVPDNLAALYTTWSRLLHIEWDDQQRPLIFTAGIPMFDNVGALIEPMTLWRQDKKTSQFKPAVASIKYTGKAMWRNFGQYVNVNRRDDIHEAGIVTWLHYLKAQGLVPDDQQLWLASTALLSDGNMSSQMPATEVYDDMQIQADVLFDESSADYWPVRIEDAINITQKIGDGYYHFAATIGQIRNIDAKQFGQRHSAQFYAELNRPFKAWLASLTGNDDREAKINEWKQTLQTITLQAANTMMATSSSRDVRGIVDHDKNNVPRQINVFTANNQLRRLVFTQLKGKQVKVADEK
>CP032757.1|AYJ41740.1|1607643_1608255_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MKNKIQKVTASIIRQLYNHGNLNKGVLASVRHATVLNSPQAQALWPIMMAELDDEMLSRDGRPTAAEVAVYTAVRFYAIQQQGSEVLVYGPANSQTDDTEKGIPLFQALAKLRRNEETRVALDRRMQPLLATTNVASAINALTHLVSMLKAANQQQKIDYARLAQDLYWLQQSYERASQVRLQWGQQYYRPQDATEKPEGKKN
>CP032757.1|AYJ41741.1|1608254_1609334_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTNNLYLDIHVIQTVPSSNINRDDTGAPKTALYGGVSRSRVSSQSWKRAVRQSFQDDTVTVGYRTKKAAQLLKDALQKLTPDLSDDDAWEQVNAVFKAASVKLDKNEETSALFMVSPGQIDQLAQYVKDNADGELDKKAIKAVLKGNQSIDLALFGRMVADNPELNVEAAAQVAHAISTHEVVPEFDYFTALDDLQPDDTTGAAMLGTLEFNSATLYRYANINMNDLIENLGEAAAVDGAREFVKAFALSMPTGKQNTFANKTLPSYVMLTLRTDTPVNLVSGFEDPVTSKQGYVKQSIEKLNAAYKQTLQFVEKPLLNVALGADASAIAVPAENLTALLGQVTTELTKVVKDENGND
>CP032757.1|AYJ41742.1|1609314_1610040_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTVTIRLTAPLQSYGDEANFDRRTSYDYPSKSAIVGLIAAALGYRRTDSRIQTLNQLDYAVRIDQPAEPLTDFQIVEWKRGKRKLTYRDYLQDAVFLAAVGSEDDALIDRIYWALHHPRFQLSLGRRANVPAGPIMTEIALGSNPAQVLQFLSWHASRFYMKKTKSATFVAELIADAALLPNHRSSMVKDNVITFDQRERQYGFRAVAFDRVPLENPYHPDRTAETDHDMMTFLWKEDQR
>CP032757.1|AYJ41743.1|1610039_1610708_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRVEIDRDNRYKTRDLTHLGAYHNWVEQSFPEEIENNQRGRHLWRIDRLNGKDYLLVLSADRPKLEQLEQYGVEGTALTKSYDTWLDHIEAGMVLRFRLTANPTHSIIEPNHPKGRVVPHVTIEQQKQWLADRALRAGFALVARADTPADETEKLAFDVVSHDWPTLHRRKGRSVRLSRVTFEGVLRVQDADTFKQTLTKGLGREKAFGMGLMTVIPTE
>CP032757.1|AYJ41744.1|1610862_1612176_-|glycosyltransferase
MEIMQTLKPFESIWNFVLLLLVSYPILGAFAWFIGVLCYQLVYRHRHKDDVEFKELAPAEQPFITIMIPAHNEEVMIEHTINYLMNNLNYQNYEVLVTDDGSTDETPAILERLQTVYDNLRVITIKKNQGKAHAFNVGVSFARGEFILSNDADSIPEPDALWKYMSYFMGEEHANTAAVTANMDVQNRSTIIAKSQTVEFSSIVGVIKRSQVSALGNMYAYSGANTMYRRDALIDVGLFRQDRATEDISIAWDHQLNGWTTVFSPDILFYMNVPENLDALYHQRKRWAKGGTEVLLTNFKRVASHPGKYLKQWAFITDQTLSIIWSLFFFVSTLIFLISLVTFFFTGNYERVYHMFCMAFIFVTFEMFAGVLQLLSALIVDDRGRKFKYLIFMPLYMLIYWQVNALALVTTLIPAVKTILGYGSGTWVSPVRKHHTE
>CP032757.1|AYJ41745.1|1612179_1612662_-|hypothetical-protein
MEKKDVMKQYVTDKYFSKGHWWTKIWQTIVAIVAWICVAVPVYWTISSTLLANNPRFIHAWKYEEGKTLFYFFDRFFIFAFILIAIIVIISTIHNNHRVKQHISKERQYDEERLDVRKRRLNNFYTQRFGQATFRQHVKHYTVDPEQNLDVNEIHKLYED

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Crispr_ID: CP032757_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032757_6

1598666-1599426

TypeI-E

I-C,I-E,II-B

Consensus_repeat	Method
GGATCACCCCCGCATACGCGGGGAACAG	CRISPRCasFinder
GGATCACCCCCGCATACGCGGGGAACAGN	CRT
GGATCACCCCCGCATACGCGGGGAACAG	PILER-CR

12 spacers

cas1,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e

The CRISPR arrays of CP032757_6

>merge|CP032757|6|1598666-1599426|CRISPRCasFinder,CRT,PILER-CR
AGGATCACCCCGCATACGCGGGGAATAGGTAAAAAACTTTATCCACTCCATGCGCTCCTTGGGATCACCCCCGCATACGCGGGGAACAGGATTGAGAATCTGCAAAACCCGTTAAGCCCTTAGGATCACCCCCGCATACGCGGGGAACAGCCTAATCCAGTCAAACTCATGCCGTTTCGAACAGGATCACCCCCGCATACGCGGGGAACAGAAATACTTATCTTTTGAGACAGCCAACCACATGGGATCACCCCCGCATACGCGGGGAACAGCATTGATATGGTGGGTTTTTGTTTTGCCAAAAAGGGATCACCCCCGCATACGCGGGGAACAGTCCTCAGGGTCATACTGCGGCTGGTTGTTCGTGGGATCACCCCCGCATACGCGGGGAACAGCGTTGGCACTTAACGCCGCTATTGGCCTGATGAGGATCACCCCCGCATACGCGGGGAACAGTGTAATGCCTGAATTTAATAATCATTGAGCCAGGGATCACCCCCGCATACGCGGGGAACAGGTCAAGCGTTCAGCTTTGTCGACACCGACGTTAGGATCACCCCCGCATACGCGGGGAACAGAAGCAGTTCCTAACGGTTATTTGTTTAAGAATGGGATCACCCCCGCATACGCGGGGAACAGTATCGTAGTTAGTCAAATGCATGACGCGATTCGGGATCACCCCCGCATACGCGGGGAACAGGCCGTTAATTTCGTAATAAAATCATCGTAACCAGGATCACCCCCGCATACGCGGGGAACAG

>CP032757|6|6|1598666-1599426|CRISPRCasFinder
AGGATCACCCCGCATACGCGGGGAATAG	GTAAAAAACTTTATCCACTCCATGCGCTCCTTG
GGATCACCCCCGCATACGCGGGGAACAG	GATTGAGAATCTGCAAAACCCGTTAAGCCCTTA
GGATCACCCCCGCATACGCGGGGAACAG	CCTAATCCAGTCAAACTCATGCCGTTTCGAACA
GGATCACCCCCGCATACGCGGGGAACAG	AAATACTTATCTTTTGAGACAGCCAACCACATG
GGATCACCCCCGCATACGCGGGGAACAG	CATTGATATGGTGGGTTTTTGTTTTGCCAAAAAG
GGATCACCCCCGCATACGCGGGGAACAG	TCCTCAGGGTCATACTGCGGCTGGTTGTTCGTG
GGATCACCCCCGCATACGCGGGGAACAG	CGTTGGCACTTAACGCCGCTATTGGCCTGATGA
GGATCACCCCCGCATACGCGGGGAACAG	TGTAATGCCTGAATTTAATAATCATTGAGCCAG
GGATCACCCCCGCATACGCGGGGAACAG	GTCAAGCGTTCAGCTTTGTCGACACCGACGTTA
GGATCACCCCCGCATACGCGGGGAACAG	AAGCAGTTCCTAACGGTTATTTGTTTAAGAATG
GGATCACCCCCGCATACGCGGGGAACAG	TATCGTAGTTAGTCAAATGCATGACGCGATTCG
GGATCACCCCCGCATACGCGGGGAACAG	GCCGTTAATTTCGTAATAAAATCATCGTAACCA
GGATCACCCCCGCATACGCGGGGAACAG

>CP032757|6|3|1598667-1599426|CRT
GGATCACCCCGCATACGCGGGGAATAGG	TAAAAAACTTTATCCACTCCATGCGCTCCTTG
GGATCACCCCCGCATACGCGGGGAACAG	GATTGAGAATCTGCAAAACCCGTTAAGCCCTTA
GGATCACCCCCGCATACGCGGGGAACAG	CCTAATCCAGTCAAACTCATGCCGTTTCGAACA
GGATCACCCCCGCATACGCGGGGAACAG	AAATACTTATCTTTTGAGACAGCCAACCACATG
GGATCACCCCCGCATACGCGGGGAACAG	CATTGATATGGTGGGTTTTTGTTTTGCCAAAAAG
GGATCACCCCCGCATACGCGGGGAACAG	TCCTCAGGGTCATACTGCGGCTGGTTGTTCGTG
GGATCACCCCCGCATACGCGGGGAACAG	CGTTGGCACTTAACGCCGCTATTGGCCTGATGA
GGATCACCCCCGCATACGCGGGGAACAG	TGTAATGCCTGAATTTAATAATCATTGAGCCAG
GGATCACCCCCGCATACGCGGGGAACAG	GTCAAGCGTTCAGCTTTGTCGACACCGACGTTA
GGATCACCCCCGCATACGCGGGGAACAG	AAGCAGTTCCTAACGGTTATTTGTTTAAGAATG
GGATCACCCCCGCATACGCGGGGAACAG	TATCGTAGTTAGTCAAATGCATGACGCGATTCG
GGATCACCCCCGCATACGCGGGGAACAG	GCCGTTAATTTCGTAATAAAATCATCGTAACCA
GGATCACCCCCGCATACGCGGGGAACAG

>CP032757|6|4|1598727-1599426|PILER-CR
GGATCACCCCCGCATACGCGGGGAACAG	GATTGAGAATCTGCAAAACCCGTTAAGCCCTTA
GGATCACCCCCGCATACGCGGGGAACAG	CCTAATCCAGTCAAACTCATGCCGTTTCGAACA
GGATCACCCCCGCATACGCGGGGAACAG	AAATACTTATCTTTTGAGACAGCCAACCACATG
GGATCACCCCCGCATACGCGGGGAACAG	CATTGATATGGTGGGTTTTTGTTTTGCCAAAAAG
GGATCACCCCCGCATACGCGGGGAACAG	TCCTCAGGGTCATACTGCGGCTGGTTGTTCGTG
GGATCACCCCCGCATACGCGGGGAACAG	CGTTGGCACTTAACGCCGCTATTGGCCTGATGA
GGATCACCCCCGCATACGCGGGGAACAG	TGTAATGCCTGAATTTAATAATCATTGAGCCAG
GGATCACCCCCGCATACGCGGGGAACAG	GTCAAGCGTTCAGCTTTGTCGACACCGACGTTA
GGATCACCCCCGCATACGCGGGGAACAG	AAGCAGTTCCTAACGGTTATTTGTTTAAGAATG
GGATCACCCCCGCATACGCGGGGAACAG	TATCGTAGTTAGTCAAATGCATGACGCGATTCG
GGATCACCCCCGCATACGCGGGGAACAG	GCCGTTAATTTCGTAATAAAATCATCGTAACCA
GGATCACCCCCGCATACGCGGGGAACAG

Protein	Signature genes	Signature genes Name	Protein_function
CP032757.1\|AYJ41731.1\|1594105_1596070_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
CP032757.1\|AYJ41733.1\|1596834_1597029_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
CP032757.1\|AYJ43467.1\|1590227_1590821_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
CP032757.1\|AYJ41738.1\|1603150_1605898_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
CP032757.1\|AYJ41734.1\|1597065_1597422_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
CP032757.1\|AYJ41736.1\|1599982_1600936_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP032757.1\|AYJ41729.1\|1591397_1592834_+\|helicase-DnaB	unknown	unknown	gnl\|CDD\|226138
CP032757.1\|AYJ41737.1\|1600932_1601832_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
CP032757.1\|AYJ41730.1\|1592837_1593773_+\|primosomal-protein-DnaI	unknown	unknown	gnl\|CDD\|236353
CP032757.1\|AYJ41744.1\|1610862_1612176_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|236882
CP032757.1\|AYJ41745.1\|1612179_1612662_-\|hypothetical-protein	unknown	unknown	unknown
CP032757.1\|AYJ41741.1\|1608254_1609334_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP032757.1\|AYJ41732.1\|1596291_1596813_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
CP032757.1\|AYJ41735.1\|1597814_1598228_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239217
CP032757.1\|AYJ41742.1\|1609314_1610040_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187886
CP032757.1\|AYJ41743.1\|1610039_1610708_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|378050
CP032757.1\|AYJ41739.1\|1605902_1607654_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
CP032757.1\|AYJ41728.1\|1590860_1591376_+\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|234774
CP032757.1\|AYJ41727.1\|1589393_1590218_+\|DNA-formamidopyrimidine-glycosylase	unknown	unknown	gnl\|CDD\|234899
CP032757.1\|AYJ41740.1\|1607643_1608255_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191

Protein	Function_ID	Function_description	E-value
CP032757.1\|AYJ41731.1\|1594105_1596070_+\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
CP032757.1\|AYJ41733.1\|1596834_1597029_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	1.32915e-16
CP032757.1\|AYJ43467.1\|1590227_1590821_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	1.0591e-80
CP032757.1\|AYJ41738.1\|1603150_1605898_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.83277e-81
CP032757.1\|AYJ41734.1\|1597065_1597422_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	2.65787e-62
CP032757.1\|AYJ41736.1\|1599982_1600936_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	7.99032e-132
CP032757.1\|AYJ41729.1\|1591397_1592834_+\|helicase-DnaB	gnl\|CDD\|226138	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair].	2.47978e-40
CP032757.1\|AYJ41737.1\|1600932_1601832_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	1.07532e-40
CP032757.1\|AYJ41730.1\|1592837_1593773_+\|primosomal-protein-DnaI	gnl\|CDD\|236353	PRK08939, PRK08939, primosomal protein DnaI; Reviewed.	3.11957e-169
CP032757.1\|AYJ41744.1\|1610862_1612176_-\|glycosyltransferase	gnl\|CDD\|236882	PRK11204, PRK11204, N-glycosyltransferase; Provisional.	8.07995e-103
CP032757.1\|AYJ41741.1\|1608254_1609334_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	6.39874e-153
CP032757.1\|AYJ41732.1\|1596291_1596813_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	8.45395e-91
CP032757.1\|AYJ41735.1\|1597814_1598228_-\|NUDIX-hydrolase	gnl\|CDD\|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	2.71926e-17
CP032757.1\|AYJ41742.1\|1609314_1610040_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.77186e-44
CP032757.1\|AYJ41743.1\|1610039_1610708_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	8.48715e-72
CP032757.1\|AYJ41739.1\|1605902_1607654_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.31974e-85
CP032757.1\|AYJ41728.1\|1590860_1591376_+\|transcriptional-repressor-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	9.6044e-88
CP032757.1\|AYJ41727.1\|1589393_1590218_+\|DNA-formamidopyrimidine-glycosylase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	2.06822e-155
CP032757.1\|AYJ41740.1\|1607643_1608255_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.33977e-25

>CP032757.1|AYJ41735.1|1597814_1598228_-|NUDIX-hydrolase
MVEIIAHVLIPTNRGFLILQRTRKEYGNKNVYPGYWDIPGGLAINNEIPRETAIRECMEETGLKVKISRIIWENSVFDTAKMRVFTTLVYLAHEISADQKIYLNREEHSEFIFVNSRQTLNKVKVVPYLEKVLLQFL
>CP032757.1|AYJ41734.1|1597065_1597422_+|50S-ribosomal-protein-L20
MARVKGGTVTRKRRKRILKLAKGYRGAKHIQFKVAKDQVMKSYQYAFRDRRRRKSDFRRLWIARINAAARINDISYSQLMHGLKVANVDVNRKMLADLAVNDADAFKALVDTAKKALA
>CP032757.1|AYJ41733.1|1596834_1597029_+|50S-ribosomal-protein-L35
MPKQKTNRAAAKRFKVTAKGKIKSANAFTSHRFHGKTKKQRRQLRGTAIIEKPMVKTYHKLLQK
>CP032757.1|AYJ41732.1|1596291_1596813_+|translation-initiation-factor-IF-3
MTIAKDSMVNDGIRAREVRLIASDGEQLGVKSRQEAMQIAEDASLDLVLVAPKAKPPVARIMDYGKYRFEQQKKEREARKKQKVVSIKEVRLSPAIDTNDFNTKLKHAEKFLSKGDKVRVSIRFKGRAITHKDIGRQVLNRMIEATKEFSTVEAYPKMDGRSMFLVLAPKTDK
>CP032757.1|AYJ41731.1|1594105_1596070_+|threonine--tRNA-ligase
MASINVKFPDGAVKQFDAGVTTEAIAKSISPSLAKRSVAGKFNDQIVDYRQPLTTDGSIEIIAADSEDGLNVLRQTAAQVLANAVKQLFPSIHFGSGEGNANGFFFDTDNPDEDGKQVSEDDLEAISDKMAAIIKQDLPIEREVLSKADALALVGDNPYQQDLVNERAAENDGQVVVYKQGDFVDLSDGAQLASTGKVKVFKLLSVAGAYWQGKSSNPMLQRIYGTAFLKQKDLDADLKRRQEARERDHRVIGNELDLFFVDPKVGNGLPYWMPNGATIRRQIERYIIDKEVANGYQHVYTPVLANLDVYKQSGHWDHYREDMFPPMDMGDGEQLELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVALDQIEEEFKKILSLMVEVYEDFDISDYRFRLSYRDPENTEKYFDDDAMWERSQKMLKSAMDDMGLDYFEAEGEAAFYGPKLDVQTKTALGGEETLSTIQLDFLLPERFDLKYVGADGEEHRPVMIHRGLVSTMERFVAYLTEMYKGAFPTWLAPKQVTIIPVNNGAHGAYAETVRRRLAAEGVRVSIDDRNEKMGYKIRESQTKKVPYLLVVGDQEVANGSVSVRKYGEERTESEAVDMFIGAITQEIKRYSRGASK
>CP032757.1|AYJ41730.1|1592837_1593773_+|primosomal-protein-DnaI
MENISETLRTLMNRKNLNHRYEALMTTVYHDPDVRQFLAAHQDELSADALERSGAKLYEFCEEKRKLARHEPTQAPGYQPTLVMSNHLIDIAYQPTPQLQEQQAARALQQRVRSISMPKSIQTADLKSYDQDGDRATALVAALDFIDAYTQAPKRFHRGLYLYGSFGVGKTYLLGGMANELAARGFNTTLIHFPSFAVEMKRSISNNTSADKVDAIKRAPILMIDDIGADASSTWIRDDVLGVILEYRMQEELPTCFSSNFSMQELQDGYLTISQKGDEEPVKAQRIMQRVRYLSSEIEMVGRNRRLNPDG
>CP032757.1|AYJ41729.1|1591397_1592834_+|helicase-DnaB
MPNEEPLTPKSGLVVPQAPALSAAQQAVLAELYLPLIGPLAYSLYAALRSLQSSENELSNRRSHAELLGILNADLPTVLAARRKLEATGLLRSYYQQDELGTLYIYRLQAPQLALQFFADDLLSVLLLDTVGELRYQQLASDFATQPVDLTAAKDVTANILEVFHIDGHKVTTTPRPVQQVRAQLAANEPAEDQSPVLSDDDFDWQLLGQILKQNYVDLKQVASSRQLIVTESRVYGISEIEMAKLISEVASLTTGQFDENQLKLLIARRYERPTTPTRTTTNEATTDQSTKPTTTAANSSKATRQPASTAQLSKAEQQLVDVAKQAAPYDFLAAVKAEKHGFVTSGENRLVHDLISRGVLPNSVINIVIYYLLQNRELAALNRSLIETVANDWQQHGVNTPEAALAYLKQRQRPKTSAPRRKSNARPTRKEVMPKWAQKQQAGEAQPDKPNKQLSEEQRQQLAARLAKLETNSEKED
>CP032757.1|AYJ41728.1|1590860_1591376_+|transcriptional-repressor-NrdR
MQCPHCHHNGSRVVDSRPTDDGRVIRRRRECENCGFRFTTFERVEATPLLVIKKNGAREEFNREKVLRGIIRSAEKRPVSMETMTGVVDDVENKVRSLGENEISSQVIGEYVMEQLADIDEISYIRFASVYRQFKDMHVFLNELQDMMERDKVKLAKPSAKTEHAPKRKKD
>CP032757.1|AYJ43467.1|1590227_1590821_+|dephospho-CoA-kinase
MTKLIGLTGGIATGKSTVSKLLAQYLPIVDADKIAWAVEGPGQPTTQKIAAKFGPDALLADGSLNRPWLGQLVFNDSAALQDLTAITSLPIQYAMFEAIVAAGQSNPTAIILDVPLLYESGWQNICDQVVVVTAPPAIVLKRLMARNQLSKQAAQARIASQLPLAQKAAWADVVIDNGSTVDKTEAAVLKWLETMTV
>CP032757.1|AYJ41727.1|1589393_1590218_+|DNA-formamidopyrimidine-glycosylase
MPELPEVETVRRGLNRLVKGATIADIDVYWPKIINNDVALFKQRLINQTIQTIDRRGKYLLFRFSNGLTMVSHLRMEGKYNVVPRGEARDKHTHVVFHLTDDRDLLYNDTRKFGRMTLVPTGEELSVAGLRTIGPEPVADQLTLAYLTATLEHSKKMIKPLLLDQSKIAGIGNIYADETLWMSKIHPMRPANSLTADEIATLRDNIITEMALAIKGHGTTVHSFSTAFGEAGQFQNHLHVYGREGEPCERCGTMIEKIKVAQRGTHFCPLEQRL
>CP032757.1|AYJ41736.1|1599982_1600936_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MEKQSGAKKPELSELGRVQDRLTFLYLEHVKLDRQDSAIRVSDARGIVFVPAAIISVLMLGPGVDVTHRAMELMGDAGMAVVWVGERGVRQYAHGRALNHSSLLLEAQAKLFSNQRSRLAVARKMYQMRFPNDDVSGLSMQALRGKEGARVRQVYRLQSERTGVKWTRRDYNPDDFEASSPINQALTAAHQALYGLSYSVIMAMGASAGLGFVHTGHDLSFVYDFADLYKAEFSIPVAFNTVAALTEDDNISRNTRLAMRDAFVDGKLLGRMVSDLKAILGVSDDQTEINNLSLWDDRLGLQEFGVQYHEIKVGETQ
>CP032757.1|AYJ41737.1|1600932_1601832_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MIVITLTKVPNALRGDLTKWYQEIQTGVYVGSVSARIRDSLWLRIVKNIGRGEATMVYNANNELGYQFKTTRRDHQVVDYDGIPLMMHLNAAPQAEEHGYSDAAKFHKARVMSQKAQQKRSQRSRKNNKPMVAVDIETTGLDPSKDVIISIGAVKATTDGQVAEFSRLISVTESIPEKISTLTGLTNDILAKQGVPIVEALSGLNAFIGDCAIVGYNFHFDEAFLKQAFISNNLEALRSQPIDLMPIVKRTNAFLDNYRLATVLSAYEIENLKPHHALEDARATLALAQALSKVEKLKI
>CP032757.1|AYJ41738.1|1603150_1605898_+|CRISPR-associated-helicase/endonuclease-Cas3
MAEFSRLAQSLWAKKRSSDGQRLWLPLIVHLKDCENTINWLFNHWLSDGQRQQLAAATSEEDVQKLVKFLGFIHDCGKATPAFQMKPAYNGDNQLDQILIEQLMRSGFKDLDVLNLSSAQRSPHALAGEAILTAYGVDPTIGAIIGGHHGKPESEPPVHQIRDYTANYFQSDNRPELQVEWQQVQRELVEYGLHSAGYQRAAEIPAINQPEAVILTGLLIMADWLASSECFDGDASKPLFPLVNTAQSVENIDVQTRFQRAIMTWRLDDEWVPAPLSQDQDPYQLRWGFHARPVQAAITRALGATTDPGMAIIEAPMGLGKTEIALIAVEQLARMTGRDGVYMGLPTQATTNAMFARVNDWLASVADEQEAHLSIKLMHGKSQFNRTYTALPNASNVNSTDEHHGAVTLNSWFSGKKSILTKFTVGTIDNLLLMGLKQKHLFLRHLGFSGKVVVIDEVHAYDAYMNAYLLRAIEWLGAYHVPIVILSATLPKIKRNQLLKAYLKGKYGRKFHQLLKLAPAGWEDTQAYPLLSVLDGPEIKQVTHFEGQSDQAPLTLAVERTNQDDQDLVATLLAQLDAGGVAGIIVNTVKRAQVLAALIPADVPLMVLHSAFLAPDRAQQEEKLQAAIGKHGQRPAKLVVIGTQVLEQSLDIDFDVLYTDIAPIDLILQRAGRLHRHQTITRPKQFRQPQLKVMGIKDFGDYGDGNEAVYGKYLLMKTDHFLPDKIQLPGDISTLVQRVYDAATDAEVPEIEPAAEKFETNLKAEQQKAGVFQVKAPQLKQGKTLHGWLDRDHTDVVNNQQASAAVRDIQETLEVILVQHTTDGDFLLDGRKLAEVASAEIAQQTLRIPAAITPNITAAITELEDLTRPYHLRWQDDVWLNGALVLPLDQNLTATFNGWQVSYSPQLGLSYSKEE
>CP032757.1|AYJ41739.1|1605902_1607654_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MEKTFNLTTEPWIEVIDAQTNQQVSVSLIELFQNAQNYRQLAGDMRTQDLAVLRLLLAILTTVYTRYDADNQGYEWLTIADDFKVVSVDEDYDSDEIHDDLKKTWQDLYEGGQFTTIVTDYLKQYANRFDLFGDQPFYQVTASEYDAVVPENKSVAHGQKTGKPTGLVAIRQMNRRISESGNSVALFAPKVNETKNDLTHAELARWLIMYQNYTGVTDKTKIKSDETFSNGAGWLYQLNPVYANGRSLFEILMLNLLLVPMDEDVRYPVQRPVWEYTGLADYLKERRRKLVPDNLAALYTTWSRLLHIEWDDQQRPLIFTAGIPMFDNVGALIEPMTLWRQDKKTSQFKPAVASIKYTGKAMWRNFGQYVNVNRRDDIHEAGIVTWLHYLKAQGLVPDDQQLWLASTALLSDGNMSSQMPATEVYDDMQIQADVLFDESSADYWPVRIEDAINITQKIGDGYYHFAATIGQIRNIDAKQFGQRHSAQFYAELNRPFKAWLASLTGNDDREAKINEWKQTLQTITLQAANTMMATSSSRDVRGIVDHDKNNVPRQINVFTANNQLRRLVFTQLKGKQVKVADEK
>CP032757.1|AYJ41740.1|1607643_1608255_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MKNKIQKVTASIIRQLYNHGNLNKGVLASVRHATVLNSPQAQALWPIMMAELDDEMLSRDGRPTAAEVAVYTAVRFYAIQQQGSEVLVYGPANSQTDDTEKGIPLFQALAKLRRNEETRVALDRRMQPLLATTNVASAINALTHLVSMLKAANQQQKIDYARLAQDLYWLQQSYERASQVRLQWGQQYYRPQDATEKPEGKKN
>CP032757.1|AYJ41741.1|1608254_1609334_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTNNLYLDIHVIQTVPSSNINRDDTGAPKTALYGGVSRSRVSSQSWKRAVRQSFQDDTVTVGYRTKKAAQLLKDALQKLTPDLSDDDAWEQVNAVFKAASVKLDKNEETSALFMVSPGQIDQLAQYVKDNADGELDKKAIKAVLKGNQSIDLALFGRMVADNPELNVEAAAQVAHAISTHEVVPEFDYFTALDDLQPDDTTGAAMLGTLEFNSATLYRYANINMNDLIENLGEAAAVDGAREFVKAFALSMPTGKQNTFANKTLPSYVMLTLRTDTPVNLVSGFEDPVTSKQGYVKQSIEKLNAAYKQTLQFVEKPLLNVALGADASAIAVPAENLTALLGQVTTELTKVVKDENGND
>CP032757.1|AYJ41742.1|1609314_1610040_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTVTIRLTAPLQSYGDEANFDRRTSYDYPSKSAIVGLIAAALGYRRTDSRIQTLNQLDYAVRIDQPAEPLTDFQIVEWKRGKRKLTYRDYLQDAVFLAAVGSEDDALIDRIYWALHHPRFQLSLGRRANVPAGPIMTEIALGSNPAQVLQFLSWHASRFYMKKTKSATFVAELIADAALLPNHRSSMVKDNVITFDQRERQYGFRAVAFDRVPLENPYHPDRTAETDHDMMTFLWKEDQR
>CP032757.1|AYJ41743.1|1610039_1610708_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRVEIDRDNRYKTRDLTHLGAYHNWVEQSFPEEIENNQRGRHLWRIDRLNGKDYLLVLSADRPKLEQLEQYGVEGTALTKSYDTWLDHIEAGMVLRFRLTANPTHSIIEPNHPKGRVVPHVTIEQQKQWLADRALRAGFALVARADTPADETEKLAFDVVSHDWPTLHRRKGRSVRLSRVTFEGVLRVQDADTFKQTLTKGLGREKAFGMGLMTVIPTE
>CP032757.1|AYJ41744.1|1610862_1612176_-|glycosyltransferase
MEIMQTLKPFESIWNFVLLLLVSYPILGAFAWFIGVLCYQLVYRHRHKDDVEFKELAPAEQPFITIMIPAHNEEVMIEHTINYLMNNLNYQNYEVLVTDDGSTDETPAILERLQTVYDNLRVITIKKNQGKAHAFNVGVSFARGEFILSNDADSIPEPDALWKYMSYFMGEEHANTAAVTANMDVQNRSTIIAKSQTVEFSSIVGVIKRSQVSALGNMYAYSGANTMYRRDALIDVGLFRQDRATEDISIAWDHQLNGWTTVFSPDILFYMNVPENLDALYHQRKRWAKGGTEVLLTNFKRVASHPGKYLKQWAFITDQTLSIIWSLFFFVSTLIFLISLVTFFFTGNYERVYHMFCMAFIFVTFEMFAGVLQLLSALIVDDRGRKFKYLIFMPLYMLIYWQVNALALVTTLIPAVKTILGYGSGTWVSPVRKHHTE
>CP032757.1|AYJ41745.1|1612179_1612662_-|hypothetical-protein
MEKKDVMKQYVTDKYFSKGHWWTKIWQTIVAIVAWICVAVPVYWTISSTLLANNPRFIHAWKYEEGKTLFYFFDRFFIFAFILIAIIVIISTIHNNHRVKQHISKERQYDEERLDVRKRRLNNFYTQRFGQATFRQHVKHYTVDPEQNLDVNEIHKLYED

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Crispr_ID: CP032757_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032757_7

1602044-1602621

TypeI-E

Consensus_repeat	Method
AGGATCACCCCCGCATACACGGGGAACAG	CRISPRCasFinder
GGATCACCCCCGCATACACGGGGAA	CRT
GGATCACCCCCGCATACACGGGGAACAG	PILER-CR

9 spacers

DEDDh,cas1,cas3,cas8e,cse2gr11,cas7,cas5,cas6e

The CRISPR arrays of CP032757_7

>merge|CP032757|7|1602044-1602621|CRISPRCasFinder,CRT,PILER-CR
AAGACTGCCCCCGTATACACGGGGAATAGGTTCCAAATATAGGAATGTCAATCGGTCACTAAGGATCACCCTCACATACACAGGGAACAGGAATGTGAAGCTGCCCGTATATCGCATCATTAAGGATCACCCCCGTATACACGGGGAATAGCGATGTTCTTGTAATACCAAGCTTGTTCTCCCGGGATCACCCCCGCATACACGGGGAACAGAGTGCTTTGGTATCATACCGATCAGCGACTTTGGGATCACCCCTGCATACACGGGGAACAGTGTGAACGCGCAAACGTCTGAATACAGCAAGTAGGATCACCCCCGCATACACGGGGAATAGGAGTATTTCCCGCCCGTGGCTGAGGCATTTTGAGGATCACCCCCGCATACACGGGGAACAGAATAGTGCAAACTTCACCAAAATGGCAACGCAGGAATCACCCCCGCATACACGGGGAACAGTTAGACCTACTAATTAATTGCGTGCTAGCACAAGGATCACCCCCGCATACACGGGGAACAGTCGCCGCTAGTACCAGTAGCAATCCAATATCCAGGATCACCCCCGCATACACGGGGAACAG

>CP032757|7|7|1602044-1602621|CRISPRCasFinder
AAGACTGCCCCCGTATACACGGGGAATAG	GTTCCAAATATAGGAATGTCAATCGGTCACTA
AGGATCACCCTCACATACACAGGGAACAG	GAATGTGAAGCTGCCCGTATATCGCATCATTA
AGGATCACCCCCGTATACACGGGGAATAG	CGATGTTCTTGTAATACCAAGCTTGTTCTCCC
GGGATCACCCCCGCATACACGGGGAACAG	AGTGCTTTGGTATCATACCGATCAGCGACTTT
GGGATCACCCCTGCATACACGGGGAACAG	TGTGAACGCGCAAACGTCTGAATACAGCAAGT
AGGATCACCCCCGCATACACGGGGAATAG	GAGTATTTCCCGCCCGTGGCTGAGGCATTTTG
AGGATCACCCCCGCATACACGGGGAACAG	AATAGTGCAAACTTCACCAAAATGGCAACGCA
GGAATCACCCCCGCATACACGGGGAACAG	TTAGACCTACTAATTAATTGCGTGCTAGCACA
AGGATCACCCCCGCATACACGGGGAACAG	TCGCCGCTAGTACCAGTAGCAATCCAATATCC
AGGATCACCCCCGCATACACGGGGAACAG

>CP032757|7|4|1602106-1602618|CRT
GGATCACCCTCACATACACAGGGAA	CAGGAATGTGAAGCTGCCCGTATATCGCATCATTAA
GGATCACCCCCGTATACACGGGGAA	TAGCGATGTTCTTGTAATACCAAGCTTGTTCTCCCG
GGATCACCCCCGCATACACGGGGAA	CAGAGTGCTTTGGTATCATACCGATCAGCGACTTTG
GGATCACCCCTGCATACACGGGGAA	CAGTGTGAACGCGCAAACGTCTGAATACAGCAAGTA
GGATCACCCCCGCATACACGGGGAA	TAGGAGTATTTCCCGCCCGTGGCTGAGGCATTTTGA
GGATCACCCCCGCATACACGGGGAA	CAGAATAGTGCAAACTTCACCAAAATGGCAACGCAG
GAATCACCCCCGCATACACGGGGAA	CAGTTAGACCTACTAATTAATTGCGTGCTAGCACAA
GGATCACCCCCGCATACACGGGGAA	CAGTCGCCGCTAGTACCAGTAGCAATCCAATATCCA
GGATCACCCCCGCATACACGGGGAA

>CP032757|7|5|1602228-1602621|PILER-CR
GGATCACCCCCGCATACACGGGGAACAG	AGTGCTTTGGTATCATACCGATCAGCGACTTTG
GGATCACCCCTGCATACACGGGGAACAG	TGTGAACGCGCAAACGTCTGAATACAGCAAGTA
GGATCACCCCCGCATACACGGGGAATAG	GAGTATTTCCCGCCCGTGGCTGAGGCATTTTGAGGA
TCACCCCCGCATACACGGGGAACAGAAT	AGTGCAAACTTCACCAAAATGGCAACGCAGGAA
TCACCCCCGCATACACGGGGAACAGTTA	GACCTACTAATTAATTGCGTGCTAGCACAAGGA
TCACCCCCGCATACACGGGGAACAGTCG	CCGCTAGTACCAGTAGCAATCCAATATCCAGGA
TCACCCCCGCATACACGGGGAACAG

Protein	Signature genes	Signature genes Name	Protein_function
CP032757.1\|AYJ41731.1\|1594105_1596070_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
CP032757.1\|AYJ41733.1\|1596834_1597029_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
CP032757.1\|AYJ41738.1\|1603150_1605898_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
CP032757.1\|AYJ41734.1\|1597065_1597422_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
CP032757.1\|AYJ41736.1\|1599982_1600936_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP032757.1\|AYJ41729.1\|1591397_1592834_+\|helicase-DnaB	unknown	unknown	gnl\|CDD\|226138
CP032757.1\|AYJ41737.1\|1600932_1601832_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
CP032757.1\|AYJ41730.1\|1592837_1593773_+\|primosomal-protein-DnaI	unknown	unknown	gnl\|CDD\|236353
CP032757.1\|AYJ41744.1\|1610862_1612176_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|236882
CP032757.1\|AYJ41745.1\|1612179_1612662_-\|hypothetical-protein	unknown	unknown	unknown
CP032757.1\|AYJ41747.1\|1613490_1614021_+\|YqeG-family-HAD-IIIA-type-phosphatase	unknown	unknown	gnl\|CDD\|225090
CP032757.1\|AYJ41741.1\|1608254_1609334_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP032757.1\|AYJ41732.1\|1596291_1596813_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
CP032757.1\|AYJ41735.1\|1597814_1598228_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239217
CP032757.1\|AYJ41742.1\|1609314_1610040_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187886
CP032757.1\|AYJ41739.1\|1605902_1607654_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
CP032757.1\|AYJ41728.1\|1590860_1591376_+\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|234774
CP032757.1\|AYJ41743.1\|1610039_1610708_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|378050
CP032757.1\|AYJ41740.1\|1607643_1608255_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
CP032757.1\|AYJ41746.1\|1612946_1613192_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP032757.1\|AYJ41731.1\|1594105_1596070_+\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
CP032757.1\|AYJ41733.1\|1596834_1597029_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	1.32915e-16
CP032757.1\|AYJ41738.1\|1603150_1605898_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.83277e-81
CP032757.1\|AYJ41734.1\|1597065_1597422_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	2.65787e-62
CP032757.1\|AYJ41736.1\|1599982_1600936_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	7.99032e-132
CP032757.1\|AYJ41729.1\|1591397_1592834_+\|helicase-DnaB	gnl\|CDD\|226138	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair].	2.47978e-40
CP032757.1\|AYJ41737.1\|1600932_1601832_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	1.07532e-40
CP032757.1\|AYJ41730.1\|1592837_1593773_+\|primosomal-protein-DnaI	gnl\|CDD\|236353	PRK08939, PRK08939, primosomal protein DnaI; Reviewed.	3.11957e-169
CP032757.1\|AYJ41744.1\|1610862_1612176_-\|glycosyltransferase	gnl\|CDD\|236882	PRK11204, PRK11204, N-glycosyltransferase; Provisional.	8.07995e-103
CP032757.1\|AYJ41747.1\|1613490_1614021_+\|YqeG-family-HAD-IIIA-type-phosphatase	gnl\|CDD\|225090	COG2179, COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only].	2.45587e-66
CP032757.1\|AYJ41741.1\|1608254_1609334_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	6.39874e-153
CP032757.1\|AYJ41732.1\|1596291_1596813_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	8.45395e-91
CP032757.1\|AYJ41735.1\|1597814_1598228_-\|NUDIX-hydrolase	gnl\|CDD\|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	2.71926e-17
CP032757.1\|AYJ41742.1\|1609314_1610040_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.77186e-44
CP032757.1\|AYJ41739.1\|1605902_1607654_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.31974e-85
CP032757.1\|AYJ41728.1\|1590860_1591376_+\|transcriptional-repressor-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	9.6044e-88
CP032757.1\|AYJ41743.1\|1610039_1610708_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	8.48715e-72
CP032757.1\|AYJ41740.1\|1607643_1608255_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.33977e-25

>CP032757.1|AYJ41737.1|1600932_1601832_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MIVITLTKVPNALRGDLTKWYQEIQTGVYVGSVSARIRDSLWLRIVKNIGRGEATMVYNANNELGYQFKTTRRDHQVVDYDGIPLMMHLNAAPQAEEHGYSDAAKFHKARVMSQKAQQKRSQRSRKNNKPMVAVDIETTGLDPSKDVIISIGAVKATTDGQVAEFSRLISVTESIPEKISTLTGLTNDILAKQGVPIVEALSGLNAFIGDCAIVGYNFHFDEAFLKQAFISNNLEALRSQPIDLMPIVKRTNAFLDNYRLATVLSAYEIENLKPHHALEDARATLALAQALSKVEKLKI
>CP032757.1|AYJ41736.1|1599982_1600936_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MEKQSGAKKPELSELGRVQDRLTFLYLEHVKLDRQDSAIRVSDARGIVFVPAAIISVLMLGPGVDVTHRAMELMGDAGMAVVWVGERGVRQYAHGRALNHSSLLLEAQAKLFSNQRSRLAVARKMYQMRFPNDDVSGLSMQALRGKEGARVRQVYRLQSERTGVKWTRRDYNPDDFEASSPINQALTAAHQALYGLSYSVIMAMGASAGLGFVHTGHDLSFVYDFADLYKAEFSIPVAFNTVAALTEDDNISRNTRLAMRDAFVDGKLLGRMVSDLKAILGVSDDQTEINNLSLWDDRLGLQEFGVQYHEIKVGETQ
>CP032757.1|AYJ41735.1|1597814_1598228_-|NUDIX-hydrolase
MVEIIAHVLIPTNRGFLILQRTRKEYGNKNVYPGYWDIPGGLAINNEIPRETAIRECMEETGLKVKISRIIWENSVFDTAKMRVFTTLVYLAHEISADQKIYLNREEHSEFIFVNSRQTLNKVKVVPYLEKVLLQFL
>CP032757.1|AYJ41734.1|1597065_1597422_+|50S-ribosomal-protein-L20
MARVKGGTVTRKRRKRILKLAKGYRGAKHIQFKVAKDQVMKSYQYAFRDRRRRKSDFRRLWIARINAAARINDISYSQLMHGLKVANVDVNRKMLADLAVNDADAFKALVDTAKKALA
>CP032757.1|AYJ41733.1|1596834_1597029_+|50S-ribosomal-protein-L35
MPKQKTNRAAAKRFKVTAKGKIKSANAFTSHRFHGKTKKQRRQLRGTAIIEKPMVKTYHKLLQK
>CP032757.1|AYJ41732.1|1596291_1596813_+|translation-initiation-factor-IF-3
MTIAKDSMVNDGIRAREVRLIASDGEQLGVKSRQEAMQIAEDASLDLVLVAPKAKPPVARIMDYGKYRFEQQKKEREARKKQKVVSIKEVRLSPAIDTNDFNTKLKHAEKFLSKGDKVRVSIRFKGRAITHKDIGRQVLNRMIEATKEFSTVEAYPKMDGRSMFLVLAPKTDK
>CP032757.1|AYJ41731.1|1594105_1596070_+|threonine--tRNA-ligase
MASINVKFPDGAVKQFDAGVTTEAIAKSISPSLAKRSVAGKFNDQIVDYRQPLTTDGSIEIIAADSEDGLNVLRQTAAQVLANAVKQLFPSIHFGSGEGNANGFFFDTDNPDEDGKQVSEDDLEAISDKMAAIIKQDLPIEREVLSKADALALVGDNPYQQDLVNERAAENDGQVVVYKQGDFVDLSDGAQLASTGKVKVFKLLSVAGAYWQGKSSNPMLQRIYGTAFLKQKDLDADLKRRQEARERDHRVIGNELDLFFVDPKVGNGLPYWMPNGATIRRQIERYIIDKEVANGYQHVYTPVLANLDVYKQSGHWDHYREDMFPPMDMGDGEQLELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVALDQIEEEFKKILSLMVEVYEDFDISDYRFRLSYRDPENTEKYFDDDAMWERSQKMLKSAMDDMGLDYFEAEGEAAFYGPKLDVQTKTALGGEETLSTIQLDFLLPERFDLKYVGADGEEHRPVMIHRGLVSTMERFVAYLTEMYKGAFPTWLAPKQVTIIPVNNGAHGAYAETVRRRLAAEGVRVSIDDRNEKMGYKIRESQTKKVPYLLVVGDQEVANGSVSVRKYGEERTESEAVDMFIGAITQEIKRYSRGASK
>CP032757.1|AYJ41730.1|1592837_1593773_+|primosomal-protein-DnaI
MENISETLRTLMNRKNLNHRYEALMTTVYHDPDVRQFLAAHQDELSADALERSGAKLYEFCEEKRKLARHEPTQAPGYQPTLVMSNHLIDIAYQPTPQLQEQQAARALQQRVRSISMPKSIQTADLKSYDQDGDRATALVAALDFIDAYTQAPKRFHRGLYLYGSFGVGKTYLLGGMANELAARGFNTTLIHFPSFAVEMKRSISNNTSADKVDAIKRAPILMIDDIGADASSTWIRDDVLGVILEYRMQEELPTCFSSNFSMQELQDGYLTISQKGDEEPVKAQRIMQRVRYLSSEIEMVGRNRRLNPDG
>CP032757.1|AYJ41729.1|1591397_1592834_+|helicase-DnaB
MPNEEPLTPKSGLVVPQAPALSAAQQAVLAELYLPLIGPLAYSLYAALRSLQSSENELSNRRSHAELLGILNADLPTVLAARRKLEATGLLRSYYQQDELGTLYIYRLQAPQLALQFFADDLLSVLLLDTVGELRYQQLASDFATQPVDLTAAKDVTANILEVFHIDGHKVTTTPRPVQQVRAQLAANEPAEDQSPVLSDDDFDWQLLGQILKQNYVDLKQVASSRQLIVTESRVYGISEIEMAKLISEVASLTTGQFDENQLKLLIARRYERPTTPTRTTTNEATTDQSTKPTTTAANSSKATRQPASTAQLSKAEQQLVDVAKQAAPYDFLAAVKAEKHGFVTSGENRLVHDLISRGVLPNSVINIVIYYLLQNRELAALNRSLIETVANDWQQHGVNTPEAALAYLKQRQRPKTSAPRRKSNARPTRKEVMPKWAQKQQAGEAQPDKPNKQLSEEQRQQLAARLAKLETNSEKED
>CP032757.1|AYJ41728.1|1590860_1591376_+|transcriptional-repressor-NrdR
MQCPHCHHNGSRVVDSRPTDDGRVIRRRRECENCGFRFTTFERVEATPLLVIKKNGAREEFNREKVLRGIIRSAEKRPVSMETMTGVVDDVENKVRSLGENEISSQVIGEYVMEQLADIDEISYIRFASVYRQFKDMHVFLNELQDMMERDKVKLAKPSAKTEHAPKRKKD
>CP032757.1|AYJ41738.1|1603150_1605898_+|CRISPR-associated-helicase/endonuclease-Cas3
MAEFSRLAQSLWAKKRSSDGQRLWLPLIVHLKDCENTINWLFNHWLSDGQRQQLAAATSEEDVQKLVKFLGFIHDCGKATPAFQMKPAYNGDNQLDQILIEQLMRSGFKDLDVLNLSSAQRSPHALAGEAILTAYGVDPTIGAIIGGHHGKPESEPPVHQIRDYTANYFQSDNRPELQVEWQQVQRELVEYGLHSAGYQRAAEIPAINQPEAVILTGLLIMADWLASSECFDGDASKPLFPLVNTAQSVENIDVQTRFQRAIMTWRLDDEWVPAPLSQDQDPYQLRWGFHARPVQAAITRALGATTDPGMAIIEAPMGLGKTEIALIAVEQLARMTGRDGVYMGLPTQATTNAMFARVNDWLASVADEQEAHLSIKLMHGKSQFNRTYTALPNASNVNSTDEHHGAVTLNSWFSGKKSILTKFTVGTIDNLLLMGLKQKHLFLRHLGFSGKVVVIDEVHAYDAYMNAYLLRAIEWLGAYHVPIVILSATLPKIKRNQLLKAYLKGKYGRKFHQLLKLAPAGWEDTQAYPLLSVLDGPEIKQVTHFEGQSDQAPLTLAVERTNQDDQDLVATLLAQLDAGGVAGIIVNTVKRAQVLAALIPADVPLMVLHSAFLAPDRAQQEEKLQAAIGKHGQRPAKLVVIGTQVLEQSLDIDFDVLYTDIAPIDLILQRAGRLHRHQTITRPKQFRQPQLKVMGIKDFGDYGDGNEAVYGKYLLMKTDHFLPDKIQLPGDISTLVQRVYDAATDAEVPEIEPAAEKFETNLKAEQQKAGVFQVKAPQLKQGKTLHGWLDRDHTDVVNNQQASAAVRDIQETLEVILVQHTTDGDFLLDGRKLAEVASAEIAQQTLRIPAAITPNITAAITELEDLTRPYHLRWQDDVWLNGALVLPLDQNLTATFNGWQVSYSPQLGLSYSKEE
>CP032757.1|AYJ41739.1|1605902_1607654_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MEKTFNLTTEPWIEVIDAQTNQQVSVSLIELFQNAQNYRQLAGDMRTQDLAVLRLLLAILTTVYTRYDADNQGYEWLTIADDFKVVSVDEDYDSDEIHDDLKKTWQDLYEGGQFTTIVTDYLKQYANRFDLFGDQPFYQVTASEYDAVVPENKSVAHGQKTGKPTGLVAIRQMNRRISESGNSVALFAPKVNETKNDLTHAELARWLIMYQNYTGVTDKTKIKSDETFSNGAGWLYQLNPVYANGRSLFEILMLNLLLVPMDEDVRYPVQRPVWEYTGLADYLKERRRKLVPDNLAALYTTWSRLLHIEWDDQQRPLIFTAGIPMFDNVGALIEPMTLWRQDKKTSQFKPAVASIKYTGKAMWRNFGQYVNVNRRDDIHEAGIVTWLHYLKAQGLVPDDQQLWLASTALLSDGNMSSQMPATEVYDDMQIQADVLFDESSADYWPVRIEDAINITQKIGDGYYHFAATIGQIRNIDAKQFGQRHSAQFYAELNRPFKAWLASLTGNDDREAKINEWKQTLQTITLQAANTMMATSSSRDVRGIVDHDKNNVPRQINVFTANNQLRRLVFTQLKGKQVKVADEK
>CP032757.1|AYJ41740.1|1607643_1608255_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MKNKIQKVTASIIRQLYNHGNLNKGVLASVRHATVLNSPQAQALWPIMMAELDDEMLSRDGRPTAAEVAVYTAVRFYAIQQQGSEVLVYGPANSQTDDTEKGIPLFQALAKLRRNEETRVALDRRMQPLLATTNVASAINALTHLVSMLKAANQQQKIDYARLAQDLYWLQQSYERASQVRLQWGQQYYRPQDATEKPEGKKN
>CP032757.1|AYJ41741.1|1608254_1609334_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTNNLYLDIHVIQTVPSSNINRDDTGAPKTALYGGVSRSRVSSQSWKRAVRQSFQDDTVTVGYRTKKAAQLLKDALQKLTPDLSDDDAWEQVNAVFKAASVKLDKNEETSALFMVSPGQIDQLAQYVKDNADGELDKKAIKAVLKGNQSIDLALFGRMVADNPELNVEAAAQVAHAISTHEVVPEFDYFTALDDLQPDDTTGAAMLGTLEFNSATLYRYANINMNDLIENLGEAAAVDGAREFVKAFALSMPTGKQNTFANKTLPSYVMLTLRTDTPVNLVSGFEDPVTSKQGYVKQSIEKLNAAYKQTLQFVEKPLLNVALGADASAIAVPAENLTALLGQVTTELTKVVKDENGND
>CP032757.1|AYJ41742.1|1609314_1610040_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTVTIRLTAPLQSYGDEANFDRRTSYDYPSKSAIVGLIAAALGYRRTDSRIQTLNQLDYAVRIDQPAEPLTDFQIVEWKRGKRKLTYRDYLQDAVFLAAVGSEDDALIDRIYWALHHPRFQLSLGRRANVPAGPIMTEIALGSNPAQVLQFLSWHASRFYMKKTKSATFVAELIADAALLPNHRSSMVKDNVITFDQRERQYGFRAVAFDRVPLENPYHPDRTAETDHDMMTFLWKEDQR
>CP032757.1|AYJ41743.1|1610039_1610708_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRVEIDRDNRYKTRDLTHLGAYHNWVEQSFPEEIENNQRGRHLWRIDRLNGKDYLLVLSADRPKLEQLEQYGVEGTALTKSYDTWLDHIEAGMVLRFRLTANPTHSIIEPNHPKGRVVPHVTIEQQKQWLADRALRAGFALVARADTPADETEKLAFDVVSHDWPTLHRRKGRSVRLSRVTFEGVLRVQDADTFKQTLTKGLGREKAFGMGLMTVIPTE
>CP032757.1|AYJ41744.1|1610862_1612176_-|glycosyltransferase
MEIMQTLKPFESIWNFVLLLLVSYPILGAFAWFIGVLCYQLVYRHRHKDDVEFKELAPAEQPFITIMIPAHNEEVMIEHTINYLMNNLNYQNYEVLVTDDGSTDETPAILERLQTVYDNLRVITIKKNQGKAHAFNVGVSFARGEFILSNDADSIPEPDALWKYMSYFMGEEHANTAAVTANMDVQNRSTIIAKSQTVEFSSIVGVIKRSQVSALGNMYAYSGANTMYRRDALIDVGLFRQDRATEDISIAWDHQLNGWTTVFSPDILFYMNVPENLDALYHQRKRWAKGGTEVLLTNFKRVASHPGKYLKQWAFITDQTLSIIWSLFFFVSTLIFLISLVTFFFTGNYERVYHMFCMAFIFVTFEMFAGVLQLLSALIVDDRGRKFKYLIFMPLYMLIYWQVNALALVTTLIPAVKTILGYGSGTWVSPVRKHHTE
>CP032757.1|AYJ41745.1|1612179_1612662_-|hypothetical-protein
MEKKDVMKQYVTDKYFSKGHWWTKIWQTIVAIVAWICVAVPVYWTISSTLLANNPRFIHAWKYEEGKTLFYFFDRFFIFAFILIAIIVIISTIHNNHRVKQHISKERQYDEERLDVRKRRLNNFYTQRFGQATFRQHVKHYTVDPEQNLDVNEIHKLYED
>CP032757.1|AYJ41746.1|1612946_1613192_+|hypothetical-protein
MTHLADSHLDADSNIKQHDSFSGGIMGLILGLITAPLSPLTELMSEFLSRLTFQVMFTGVDNECELMPTHANEFPPAIQLI
>CP032757.1|AYJ41747.1|1613490_1614021_+|YqeG-family-HAD-IIIA-type-phosphatase
MINQFKPTWMIPAIYNVTPAQLRAQGIKAVFTDLDNTLIAWDNPDGTPELKKWLHALQDAGIPLVVVSNNSEARIAKALEQLDLPFVSRSLKPLPIGLNKARHDLGLHKNEVVMVGDQYITDMWSAHLAGVPSILVKPIVTTDAWNTRINRFFERFIKLRLAHVYPEMHFQEDLNK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP032757_9	9.1\|3070400\|25\|CP032757\|CRISPRCasFinder	3070400-3070424	25	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	324477-324501	4	0.84
CP032757_9	9.1\|3070400\|25\|CP032757\|CRISPRCasFinder	3070400-3070424	25	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	392015-392039	4	0.84
CP032757_9	9.1\|3070400\|25\|CP032757\|CRISPRCasFinder	3070400-3070424	25	CP021182	Sphingomonas wittichii DC-6 plasmid pDC01, complete sequence	110411-110435	4	0.84
CP032757_9	9.1\|3070400\|25\|CP032757\|CRISPRCasFinder	3070400-3070424	25	NZ_CP053224	Sphingobium sp. RSMS plasmid pRSMS1, complete sequence	98255-98279	4	0.84
CP032757_9	9.1\|3070400\|25\|CP032757\|CRISPRCasFinder	3070400-3070424	25	NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	221066-221090	4	0.84
CP032757_9	9.1\|3070400\|25\|CP032757\|CRISPRCasFinder	3070400-3070424	25	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	324478-324502	4	0.84
CP032757_9	9.1\|3070400\|25\|CP032757\|CRISPRCasFinder	3070400-3070424	25	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	614173-614197	4	0.84
CP032757_1	1.7\|159769\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159769-159798	30	NZ_CP017207	Borreliella burgdorferi strain B331 plasmid B331_cp32_5, complete sequence	15351-15380	6	0.8
CP032757_1	1.7\|159769\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159769-159798	30	KT070867	Bacillus phage PBC2, complete genome	93724-93753	6	0.8
CP032757_3	3.11\|1308462\|31\|CP032757\|PILER-CR	1308462-1308492	31	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1145474-1145504	6	0.806
CP032757_1	1.1\|159374\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159374-159403	30	NZ_CP014527	Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence	262506-262535	7	0.767
CP032757_1	1.1\|159374\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159374-159403	30	NC_013328	Staphylococcus aureus plasmid pWBG753, complete sequence	27266-27295	7	0.767
CP032757_1	1.1\|159374\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159374-159403	30	NZ_LN831038	Staphylococcus aureus strain NCTC13435 plasmid 3, complete sequence	4945-4974	7	0.767
CP032757_1	1.1\|159374\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159374-159403	30	NZ_MH587574	Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence	30181-30210	7	0.767
CP032757_1	1.1\|159374\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159374-159403	30	NZ_CP010403	Staphylococcus aureus subsp. aureus strain GR2 plasmid pGR2A, complete sequence	21414-21443	7	0.767
CP032757_1	1.1\|159374\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159374-159403	30	NC_017350	Staphylococcus aureus subsp. aureus 11819-97 plasmid p11819-97, complete sequence	20682-20711	7	0.767
CP032757_1	1.3\|159506\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159506-159535	30	NZ_CP022516	Arenibacter algicola strain SMS7 plasmid pSMS7, complete sequence	16948-16977	7	0.767
CP032757_1	1.7\|159769\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159769-159798	30	NZ_CP017256	Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence	119290-119319	7	0.767
CP032757_1	1.7\|159769\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159769-159798	30	AP014284	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S23-C63, * SEQUENCING IN PROGRESS *	14289-14318	7	0.767
CP032757_3	3.11\|1308462\|31\|CP032757\|PILER-CR	1308462-1308492	31	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	1343004-1343034	7	0.774
CP032757_7	7.7\|1602439\|32\|CP032757\|CRISPRCasFinder	1602439-1602470	32	NZ_CP019309	Phaeobacter inhibens strain DOK1-1 plasmid pDOK1-1-2, complete sequence	108687-108718	7	0.781
CP032757_1	1.4\|159572\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159572-159601	30	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	414236-414265	8	0.733
CP032757_3	3.2\|1308400\|32\|CP032757\|CRISPRCasFinder	1308400-1308431	32	LC105987	Pseudomonas phage KPP22 DNA, complete genome	62774-62805	8	0.75
CP032757_3	3.2\|1308400\|32\|CP032757\|CRISPRCasFinder	1308400-1308431	32	MN615701	Pseudomonas phage vB_PaeM_SMS21, complete genome	11778-11809	8	0.75
CP032757_3	3.2\|1308400\|32\|CP032757\|CRISPRCasFinder	1308400-1308431	32	MN131142	Pseudomonas virus PA8P1, complete genome	18137-18168	8	0.75
CP032757_3	3.2\|1308400\|32\|CP032757\|CRISPRCasFinder	1308400-1308431	32	MT118290	Pseudomonas phage Epa10, complete genome	42107-42138	8	0.75
CP032757_3	3.2\|1308400\|32\|CP032757\|CRISPRCasFinder	1308400-1308431	32	MN615700	Pseudomonas phage vB_PaeM_SMS12, complete genome	11603-11634	8	0.75
CP032757_3	3.2\|1308400\|32\|CP032757\|CRISPRCasFinder	1308400-1308431	32	NC_019935	Pseudomonas phage KPP12 DNA, complete genome	10204-10235	8	0.75
CP032757_3	3.2\|1308400\|32\|CP032757\|CRISPRCasFinder	1308400-1308431	32	KR054033	Pseudomonas phage DL68, complete genome	63817-63848	8	0.75
CP032757_3	3.2\|1308400\|32\|CP032757\|CRISPRCasFinder	1308400-1308431	32	LC105988	Pseudomonas phage KPP22M1 DNA, complete genome	62774-62805	8	0.75
CP032757_3	3.2\|1308400\|32\|CP032757\|CRISPRCasFinder	1308400-1308431	32	LC105990	Pseudomonas phage KPP22M3 DNA, complete genome	62774-62805	8	0.75
CP032757_3	3.2\|1308400\|32\|CP032757\|CRISPRCasFinder	1308400-1308431	32	LC105989	Pseudomonas phage KPP22M2 DNA, complete genome	62774-62805	8	0.75
CP032757_3	3.2\|1308400\|32\|CP032757\|CRISPRCasFinder	1308400-1308431	32	MN615702	Pseudomonas phage vB_PaeM_SMS29, complete genome	11603-11634	8	0.75
CP032757_3	3.3\|1308461\|32\|CP032757\|CRISPRCasFinder	1308461-1308492	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	1343004-1343035	8	0.75
CP032757_3	3.3\|1308461\|32\|CP032757\|CRISPRCasFinder	1308461-1308492	32	NZ_CP022419	Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-4, complete sequence	70319-70350	8	0.75
CP032757_3	3.3\|1308461\|32\|CP032757\|CRISPRCasFinder	1308461-1308492	32	NZ_CP040754	Sulfitobacter sp. BSw21498 plasmid unnamed, complete sequence	54729-54760	8	0.75
CP032757_3	3.3\|1308461\|32\|CP032757\|CRISPRCasFinder	1308461-1308492	32	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1145474-1145505	8	0.75
CP032757_3	3.11\|1308462\|31\|CP032757\|PILER-CR	1308462-1308492	31	NZ_CP022419	Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-4, complete sequence	70320-70350	8	0.742
CP032757_3	3.11\|1308462\|31\|CP032757\|PILER-CR	1308462-1308492	31	NZ_CP040754	Sulfitobacter sp. BSw21498 plasmid unnamed, complete sequence	54730-54760	8	0.742
CP032757_6	6.8\|1599122\|33\|CP032757\|CRISPRCasFinder,CRT,PILER-CR	1599122-1599154	33	NC_028782	Bacillus phage Pavlov, complete genome	31620-31652	8	0.758
CP032757_6	6.8\|1599122\|33\|CP032757\|CRISPRCasFinder,CRT,PILER-CR	1599122-1599154	33	KM236248	Bacillus phage Pookie, complete genome	31710-31742	8	0.758
CP032757_1	1.1\|159374\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159374-159403	30	NZ_CP051645	Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence	27826-27855	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	MF679144	Escherichia coli plasmid pBJ114-78, complete sequence	38291-38320	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_KU043116	Escherichia coli strain Y5 plasmid pECY56, complete sequence	25553-25582	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_KU130396	Escherichia coli strain S68 plasmid pS68, complete sequence	92140-92169	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_KR653209	Escherichia coli strain GDZ13 plasmid pGD0503Z13, complete sequence	100226-100255	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_CP010130	Escherichia coli strain C9 plasmid A, complete genome	6899-6928	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_CP033963	Klebsiella pneumoniae strain L482 plasmid p4_L382, complete sequence	7658-7687	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_CP020547	Escherichia coli strain ZJ3920 plasmid pZJ3920-2, complete sequence	24222-24251	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	MN915010	Escherichia coli strain TJ-33 plasmid pNDM-TJ33, complete sequence	204238-204267	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	MN915012	Escherichia coli strain GD-33 plasmid pNDM33-2, complete sequence	94082-94111	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	MN915013	Escherichia coli strain TD-33 plasmid pNDM-TD33, complete sequence	131356-131385	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_CP045189	Escherichia coli strain NT1F31 plasmid pNT1F31-96kb, complete sequence	35070-35099	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_CP036244	Escherichia coli strain S65EC plasmid pS65EC, complete sequence	5858-5887	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	CP034251	Salmonella enterica subsp. enterica serovar Derby strain Sa64 plasmid pSa64T-188, complete sequence	127016-127045	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	CP034252	Salmonella enterica subsp. enterica serovar Derby strain Sa64 plasmid pSa64-96, complete sequence	19043-19072	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_CP019018	Escherichia coli strain Ecol_244 plasmid pEC244_2, complete sequence	152039-152068	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_CP040548	Klebsiella pneumoniae strain CR-HvKP5 plasmid pCR-HvKP5-p3, complete sequence	6881-6910	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_CP031615	Klebsiella pneumoniae strain ZYST1 plasmid pZYST1C2, complete sequence	79100-79129	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	MG516908	Escherichia coli plasmid pEc42, complete sequence	32269-32298	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NC_025147	Escherichia coli plasmid pV404, complete sequence	7288-7317	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_CP030921	Escherichia coli strain KL53 plasmid pKL53-M, complete sequence	22747-22776	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	KX246267	Escherichia coli plasmid pHNHN21, complete sequence	7463-7492	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	CP051282	Salmonella enterica subsp. enterica serovar Typhimurium strain OLF-FSR1_WB_Junco_ST-35 plasmid pST35-95663.1B, complete sequence	92186-92215	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NC_019097	Escherichia coli plasmid Plm, complete sequence	7289-7318	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_CP040542	Klebsiella pneumoniae strain CR-HvKP4 plasmid pCR-HvKP4-p3, complete sequence	6881-6910	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_CP039604	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014868 plasmid p12-6919.1, complete sequence	38664-38693	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_CP019890	Enterobacter hormaechei strain FRM plasmid unnamed1, complete sequence	112378-112407	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NC_019111	Salmonella enterica subsp. enterica serovar Typhimurium plasmid pSal8934a, complete sequence	85537-85566	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_CP032888	Escherichia coli strain SCEC020022 plasmid pCTXM14_020022, complete sequence	6881-6910	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NC_021155	Salmonella enterica subsp. enterica serovar Typhimurium str. U288 plasmid pSTU288-1, complete sequence	115264-115293	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_CP036203	Escherichia coli strain L725 plasmid punnamed1, complete sequence	64176-64205	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_CP041441	Escherichia coli strain YPE12 plasmid pYPE12-122k, complete sequence	6881-6910	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_MH674341	Escherichia coli strain EC07 plasmid pUR-EC07, complete sequence	6879-6908	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_MN241905	Salmonella enterica subsp. enterica serovar Typhimurium strain STM3224 plasmid pUY_STM96, complete sequence	90742-90771	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	MN262643	Escherichia coli strain EC009 plasmid pEC009.2, complete sequence	33278-33307	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_MH626559	Salmonella enterica subsp. enterica serovar Typhimurium strain ST1007 plasmid pST1007-1C, complete sequence	64343-64372	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_MH626558	Salmonella enterica subsp. enterica serovar Typhimurium strain ST1007 plasmid pST1007-1B, complete sequence	64343-64372	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_KY748189	Escherichia coli strain EC007 plasmid pEC007, complete sequence	25573-25602	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_KY865323	Escherichia coli strain SY286M plasmid pECM13, complete sequence	30219-30248	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_KY748188	Escherichia coli strain EC006 plasmid pEC006, complete sequence	25573-25602	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_KY748190	Escherichia coli strain EC008 plasmid pEC008, complete sequence	42809-42838	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_MF344576	Escherichia coli strain 15061806 plasmid p61806-CTXM, complete sequence	6835-6864	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_MH257753	Salmonella enterica subsp. enterica serovar Typhimurium strain 1007 plasmid pST1007-1A, complete sequence	64343-64372	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_MH648141	Salmonella enterica subsp. enterica serovar Typhimurium strain ST1007 plasmid pST1007-1D, complete sequence	64343-64372	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_MG878866	Escherichia coli strain Ec19397 plasmid pEc19397-131, complete sequence	60899-60928	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	MN548042	Klebsiella pneumoniae strain QD23 plasmid pQD23-1, complete sequence	6881-6910	9	0.7
CP032757_1	1.8\|159835\|30\|CP032757\|PILER-CR,CRISPRCasFinder,CRT	159835-159864	30	NZ_CP040536	Klebsiella pneumoniae strain CR-HvKP1 plasmid pCR-HvKP1-p3, complete sequence	6881-6910	9	0.7
CP032757_3	3.12\|1308523\|31\|CP032757\|PILER-CR	1308523-1308553	31	NZ_CP040502	Lactobacillus paragasseri JV-V03 plasmid unnamed2, complete sequence	9614-9644	9	0.71
CP032757_3	3.13\|1308584\|31\|CP032757\|PILER-CR	1308584-1308614	31	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	1273856-1273886	9	0.71
CP032757_6	6.10\|1599244\|33\|CP032757\|CRISPRCasFinder,CRT,PILER-CR	1599244-1599276	33	NC_007603	Enterobacteria phage RTP, complete genome	39425-39457	9	0.727
CP032757_6	6.10\|1599244\|33\|CP032757\|CRISPRCasFinder,CRT,PILER-CR	1599244-1599276	33	AM156909	Bacteriophage RTP, complete genome	39425-39457	9	0.727
CP032757_3	3.4\|1308522\|32\|CP032757\|CRISPRCasFinder	1308522-1308553	32	NZ_CP040502	Lactobacillus paragasseri JV-V03 plasmid unnamed2, complete sequence	9614-9645	10	0.688
CP032757_3	3.5\|1308583\|32\|CP032757\|CRISPRCasFinder	1308583-1308614	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	1273856-1273887	10	0.688
CP032757_7	7.3\|1602195\|32\|CP032757\|CRISPRCasFinder	1602195-1602226	32	NC_018516	Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence	718-749	10	0.688
CP032757_7	7.3\|1602195\|32\|CP032757\|CRISPRCasFinder	1602195-1602226	32	NZ_CP053970	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence	80130-80161	10	0.688
CP032757_7	7.3\|1602195\|32\|CP032757\|CRISPRCasFinder	1602195-1602226	32	NZ_CP053979	Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence	337943-337974	10	0.688
CP032757_7	7.3\|1602195\|32\|CP032757\|CRISPRCasFinder	1602195-1602226	32	NZ_CP013277	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence	206664-206695	10	0.688
CP032757_7	7.3\|1602195\|32\|CP032757\|CRISPRCasFinder	1602195-1602226	32	NZ_CP039723	Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence	323667-323698	10	0.688
CP032757_7	7.3\|1602195\|32\|CP032757\|CRISPRCasFinder	1602195-1602226	32	NZ_CP009348	Bacillus thuringiensis HD1002 plasmid 2, complete sequence	206665-206696	10	0.688
CP032757_7	7.3\|1602195\|32\|CP032757\|CRISPRCasFinder	1602195-1602226	32	NZ_CP009334	Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence	284513-284544	10	0.688
CP032757_7	7.3\|1602195\|32\|CP032757\|CRISPRCasFinder	1602195-1602226	32	NZ_CP045024	Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence	206174-206205	10	0.688

1. spacer 9.1|3070400|25|CP032757|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 4, identity: 0.84

ggttgcagcggtgctcgttgcttga	CRISPR spacer
cgttgcagcggtgctcgtcggttgc	Protospacer
 *****************.* ***

2. spacer 9.1|3070400|25|CP032757|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 4, identity: 0.84

ggttgcagcggtgctcgttgcttga	CRISPR spacer
cgttgcagcggtgctcgtcggttgc	Protospacer
 *****************.* ***

3. spacer 9.1|3070400|25|CP032757|CRISPRCasFinder matches to CP021182 (Sphingomonas wittichii DC-6 plasmid pDC01, complete sequence) position: , mismatch: 4, identity: 0.84

ggttgcagcggtgctcgttgcttga	CRISPR spacer
cgttgcagcggcgctcgttccttgc	Protospacer
 **********.******* ****

4. spacer 9.1|3070400|25|CP032757|CRISPRCasFinder matches to NZ_CP053224 (Sphingobium sp. RSMS plasmid pRSMS1, complete sequence) position: , mismatch: 4, identity: 0.84

ggttgcagcggtgctcgttgcttga	CRISPR spacer
cgttgcagcggcgctcgttccttgc	Protospacer
 **********.******* ****

5. spacer 9.1|3070400|25|CP032757|CRISPRCasFinder matches to NC_020542 (Sphingomonas sp. MM-1 plasmid pISP0, complete sequence) position: , mismatch: 4, identity: 0.84

ggttgcagcggtgctcgttgcttga	CRISPR spacer
cgttgcagcggcgctcgttccttgc	Protospacer
 **********.******* ****

6. spacer 9.1|3070400|25|CP032757|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 4, identity: 0.84

ggttgcagcggtgctcgttgcttga	CRISPR spacer
cgttgcagcggtgctcgtcggttgc	Protospacer
 *****************.* ***

7. spacer 9.1|3070400|25|CP032757|CRISPRCasFinder matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 4, identity: 0.84

ggttgcagcggtgctcgttgcttga	CRISPR spacer
cgttgcagcggcgctcgttccttgc	Protospacer
 **********.******* ****

8. spacer 1.7|159769|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017207 (Borreliella burgdorferi strain B331 plasmid B331_cp32_5, complete sequence) position: , mismatch: 6, identity: 0.8

tttaaattctcctttatctcttatcgtttt	CRISPR spacer
tttaaattcttctttatcttttagtttttc	Protospacer
**********.********.*** . ***.

9. spacer 1.7|159769|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to KT070867 (Bacillus phage PBC2, complete genome) position: , mismatch: 6, identity: 0.8

tttaaattctcctttatctcttatcgtttt	CRISPR spacer
ttttagttctcctttatctcttagaatttc	Protospacer
*** *.*****************  .***.

10. spacer 3.11|1308462|31|CP032757|PILER-CR matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 6, identity: 0.806

-tgcacgaatcggcggaacatccgccgacaac	CRISPR spacer
gagca-ggttcagcggaccatccgccgacaac	Protospacer
  *** *. **.***** **************

11. spacer 1.1|159374|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014527 (Haematospirillum jordaniae strain H5569 plasmid unnamed 2, complete sequence) position: , mismatch: 7, identity: 0.767

aaaatcatttgtaaagttcaatggcttgtt	CRISPR spacer
gaagaggcttgtacagttcaatggcttgtt	Protospacer
.**.  ..***** ****************

12. spacer 1.1|159374|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NC_013328 (Staphylococcus aureus plasmid pWBG753, complete sequence) position: , mismatch: 7, identity: 0.767

aaaatcatttgtaaagttcaatggcttgtt	CRISPR spacer
taaatcttttgtaaagttcaattttctgtc	Protospacer
 ***** ***************  ..***.

13. spacer 1.1|159374|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN831038 (Staphylococcus aureus strain NCTC13435 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.767

aaaatcatttgtaaagttcaatggcttgtt	CRISPR spacer
taaatcttttgtaaagttcaattttctgtc	Protospacer
 ***** ***************  ..***.

14. spacer 1.1|159374|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH587574 (Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence) position: , mismatch: 7, identity: 0.767

aaaatcatttgtaaagttcaatggcttgtt	CRISPR spacer
taaatcttttgtaaagttcaattttctgtc	Protospacer
 ***** ***************  ..***.

15. spacer 1.1|159374|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010403 (Staphylococcus aureus subsp. aureus strain GR2 plasmid pGR2A, complete sequence) position: , mismatch: 7, identity: 0.767

aaaatcatttgtaaagttcaatggcttgtt	CRISPR spacer
taaatcttttgtaaagttcaattttctgtc	Protospacer
 ***** ***************  ..***.

16. spacer 1.1|159374|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NC_017350 (Staphylococcus aureus subsp. aureus 11819-97 plasmid p11819-97, complete sequence) position: , mismatch: 7, identity: 0.767

aaaatcatttgtaaagttcaatggcttgtt	CRISPR spacer
taaatcttttgtaaagttcaattttctgtc	Protospacer
 ***** ***************  ..***.

17. spacer 1.3|159506|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022516 (Arenibacter algicola strain SMS7 plasmid pSMS7, complete sequence) position: , mismatch: 7, identity: 0.767

ttacccgcttgcatggtacaataggaacat	CRISPR spacer
gcctccgcttgaatcgtacaataggaacac	Protospacer
 . .******* ** **************.

18. spacer 1.7|159769|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017256 (Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence) position: , mismatch: 7, identity: 0.767

tttaaattctcctttatctcttatcgtttt	CRISPR spacer
tttaaattctcctttatctgtttttaagat	Protospacer
******************* ** *..   *

19. spacer 1.7|159769|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to AP014284 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S23-C63, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

tttaaattctcctttatctcttatcgtttt	CRISPR spacer
agcaacatctcttttatctcttattgtttt	Protospacer
  .**  ****.************.*****

20. spacer 3.11|1308462|31|CP032757|PILER-CR matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 7, identity: 0.774

tgcacgaatcggcggaacatccgccgacaac	CRISPR spacer
cgagcgcttcggcggaagatccgccgtcaac	Protospacer
.* .**  ********* ******** ****

21. spacer 7.7|1602439|32|CP032757|CRISPRCasFinder matches to NZ_CP019309 (Phaeobacter inhibens strain DOK1-1 plasmid pDOK1-1-2, complete sequence) position: , mismatch: 7, identity: 0.781

aatagtgcaaacttcaccaaaatggcaacgca	CRISPR spacer
agaagatcaaccttcaccaacatggcaacgaa	Protospacer
*. **  *** ********* ********* *

22. spacer 1.4|159572|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.733

ggcagcggacggatggtctgcacctgcgct	CRISPR spacer
ggcagcagatggatggtctgcacgaattcg	Protospacer
******.**.*************  .. *

23. spacer 3.2|1308400|32|CP032757|CRISPRCasFinder matches to LC105987 (Pseudomonas phage KPP22 DNA, complete genome) position: , mismatch: 8, identity: 0.75

atgacaagaccaacgatgcgaagtcc-aatgta	CRISPR spacer
tcaacaacatcaacgatgcgaagtccggatat-	Protospacer
 ..**** *.**************** .**.*

24. spacer 3.2|1308400|32|CP032757|CRISPRCasFinder matches to MN615701 (Pseudomonas phage vB_PaeM_SMS21, complete genome) position: , mismatch: 8, identity: 0.75

atgacaagaccaacgatgcgaagtcc-aatgta	CRISPR spacer
tcaacaacatcaacgatgcgaagtccggatat-	Protospacer
 ..**** *.**************** .**.*

25. spacer 3.2|1308400|32|CP032757|CRISPRCasFinder matches to MN131142 (Pseudomonas virus PA8P1, complete genome) position: , mismatch: 8, identity: 0.75

atgacaagaccaacgatgcgaagtcc-aatgta	CRISPR spacer
tcaacaacatcaacgatgcgaagtccggatat-	Protospacer
 ..**** *.**************** .**.*

26. spacer 3.2|1308400|32|CP032757|CRISPRCasFinder matches to MT118290 (Pseudomonas phage Epa10, complete genome) position: , mismatch: 8, identity: 0.75

atgacaagaccaacgatgcgaagtcc-aatgta	CRISPR spacer
tcaacaacatcaacgatgcgaagtccggatat-	Protospacer
 ..**** *.**************** .**.*

27. spacer 3.2|1308400|32|CP032757|CRISPRCasFinder matches to MN615700 (Pseudomonas phage vB_PaeM_SMS12, complete genome) position: , mismatch: 8, identity: 0.75

atgacaagaccaacgatgcgaagtcc-aatgta	CRISPR spacer
tcaacaacatcaacgatgcgaagtccggatat-	Protospacer
 ..**** *.**************** .**.*

28. spacer 3.2|1308400|32|CP032757|CRISPRCasFinder matches to NC_019935 (Pseudomonas phage KPP12 DNA, complete genome) position: , mismatch: 8, identity: 0.75

atgacaagaccaacgatgcgaagtcc-aatgta	CRISPR spacer
tcaacaacatcaacgatgcgaagtccggatat-	Protospacer
 ..**** *.**************** .**.*

29. spacer 3.2|1308400|32|CP032757|CRISPRCasFinder matches to KR054033 (Pseudomonas phage DL68, complete genome) position: , mismatch: 8, identity: 0.75

atgacaagaccaacgatgcgaagtcc-aatgta	CRISPR spacer
tcaacaacatcaacgatgcgaagtccggatat-	Protospacer
 ..**** *.**************** .**.*

30. spacer 3.2|1308400|32|CP032757|CRISPRCasFinder matches to LC105988 (Pseudomonas phage KPP22M1 DNA, complete genome) position: , mismatch: 8, identity: 0.75

atgacaagaccaacgatgcgaagtcc-aatgta	CRISPR spacer
tcaacaacatcaacgatgcgaagtccggatat-	Protospacer
 ..**** *.**************** .**.*

31. spacer 3.2|1308400|32|CP032757|CRISPRCasFinder matches to LC105990 (Pseudomonas phage KPP22M3 DNA, complete genome) position: , mismatch: 8, identity: 0.75

atgacaagaccaacgatgcgaagtcc-aatgta	CRISPR spacer
tcaacaacatcaacgatgcgaagtccggatat-	Protospacer
 ..**** *.**************** .**.*

32. spacer 3.2|1308400|32|CP032757|CRISPRCasFinder matches to LC105989 (Pseudomonas phage KPP22M2 DNA, complete genome) position: , mismatch: 8, identity: 0.75

atgacaagaccaacgatgcgaagtcc-aatgta	CRISPR spacer
tcaacaacatcaacgatgcgaagtccggatat-	Protospacer
 ..**** *.**************** .**.*

33. spacer 3.2|1308400|32|CP032757|CRISPRCasFinder matches to MN615702 (Pseudomonas phage vB_PaeM_SMS29, complete genome) position: , mismatch: 8, identity: 0.75

atgacaagaccaacgatgcgaagtcc-aatgta	CRISPR spacer
tcaacaacatcaacgatgcgaagtccggatat-	Protospacer
 ..**** *.**************** .**.*

34. spacer 3.3|1308461|32|CP032757|CRISPRCasFinder matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 8, identity: 0.75

atgcacgaatcggcggaacatccgccgacaac	CRISPR spacer
gcgagcgcttcggcggaagatccgccgtcaac	Protospacer
..* .**  ********* ******** ****

35. spacer 3.3|1308461|32|CP032757|CRISPRCasFinder matches to NZ_CP022419 (Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-4, complete sequence) position: , mismatch: 8, identity: 0.75

atgca-cgaatcggcggaacatccgccgacaac	CRISPR spacer
-tgcgccgattcgggggaacatccgccgatccg	Protospacer
 ***. *** **** **************.

36. spacer 3.3|1308461|32|CP032757|CRISPRCasFinder matches to NZ_CP040754 (Sulfitobacter sp. BSw21498 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atgca-cgaatcggcggaacatccgccgacaac	CRISPR spacer
-tgcgccgattcgggggaacatccgccgatccg	Protospacer
 ***. *** **** **************.

37. spacer 3.3|1308461|32|CP032757|CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 8, identity: 0.75

atgcacgaa-tcggcggaacatccgccgacaac	CRISPR spacer
-tgagcaggttcagcggaccatccgccgacaac	Protospacer
 ** .*... **.***** **************

38. spacer 3.11|1308462|31|CP032757|PILER-CR matches to NZ_CP022419 (Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-4, complete sequence) position: , mismatch: 8, identity: 0.742

tgca-cgaatcggcggaacatccgccgacaac	CRISPR spacer
-gcgccgattcgggggaacatccgccgatccg	Protospacer
 **. *** **** **************.

39. spacer 3.11|1308462|31|CP032757|PILER-CR matches to NZ_CP040754 (Sulfitobacter sp. BSw21498 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

tgca-cgaatcggcggaacatccgccgacaac	CRISPR spacer
-gcgccgattcgggggaacatccgccgatccg	Protospacer
 **. *** **** **************.

40. spacer 6.8|1599122|33|CP032757|CRISPRCasFinder,CRT,PILER-CR matches to NC_028782 (Bacillus phage Pavlov, complete genome) position: , mismatch: 8, identity: 0.758

tgtaatgcctgaatttaataatcattgagccag	CRISPR spacer
tgtaatggctgaatttaaaaatcaaattgacgg	Protospacer
******* ********** *****    * *.*

41. spacer 6.8|1599122|33|CP032757|CRISPRCasFinder,CRT,PILER-CR matches to KM236248 (Bacillus phage Pookie, complete genome) position: , mismatch: 8, identity: 0.758

tgtaatgcctgaatttaataatcattgagccag	CRISPR spacer
tgtaatggctgaatttaaaaatcaaattgacgg	Protospacer
******* ********** *****    * *.*

42. spacer 1.1|159374|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051645 (Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence) position: , mismatch: 9, identity: 0.7

aaaatcatttgtaaagttcaatggcttgtt	CRISPR spacer
taaatcttttgtaaagttcaattctccgcc	Protospacer
 ***** ***************  ...*..

43. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to MF679144 (Escherichia coli plasmid pBJ114-78, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

44. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU043116 (Escherichia coli strain Y5 plasmid pECY56, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

45. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU130396 (Escherichia coli strain S68 plasmid pS68, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

46. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KR653209 (Escherichia coli strain GDZ13 plasmid pGD0503Z13, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

47. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010130 (Escherichia coli strain C9 plasmid A, complete genome) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

48. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033963 (Klebsiella pneumoniae strain L482 plasmid p4_L382, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

49. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020547 (Escherichia coli strain ZJ3920 plasmid pZJ3920-2, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

50. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to MN915010 (Escherichia coli strain TJ-33 plasmid pNDM-TJ33, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

51. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to MN915012 (Escherichia coli strain GD-33 plasmid pNDM33-2, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

52. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to MN915013 (Escherichia coli strain TD-33 plasmid pNDM-TD33, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

53. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045189 (Escherichia coli strain NT1F31 plasmid pNT1F31-96kb, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

54. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036244 (Escherichia coli strain S65EC plasmid pS65EC, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

55. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to CP034251 (Salmonella enterica subsp. enterica serovar Derby strain Sa64 plasmid pSa64T-188, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

56. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to CP034252 (Salmonella enterica subsp. enterica serovar Derby strain Sa64 plasmid pSa64-96, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

57. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019018 (Escherichia coli strain Ecol_244 plasmid pEC244_2, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

58. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040548 (Klebsiella pneumoniae strain CR-HvKP5 plasmid pCR-HvKP5-p3, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

59. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031615 (Klebsiella pneumoniae strain ZYST1 plasmid pZYST1C2, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

60. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to MG516908 (Escherichia coli plasmid pEc42, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

61. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NC_025147 (Escherichia coli plasmid pV404, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

62. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030921 (Escherichia coli strain KL53 plasmid pKL53-M, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

63. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to KX246267 (Escherichia coli plasmid pHNHN21, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

64. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to CP051282 (Salmonella enterica subsp. enterica serovar Typhimurium strain OLF-FSR1_WB_Junco_ST-35 plasmid pST35-95663.1B, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

65. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NC_019097 (Escherichia coli plasmid Plm, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

66. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040542 (Klebsiella pneumoniae strain CR-HvKP4 plasmid pCR-HvKP4-p3, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

67. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039604 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014868 plasmid p12-6919.1, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

68. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019890 (Enterobacter hormaechei strain FRM plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

69. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NC_019111 (Salmonella enterica subsp. enterica serovar Typhimurium plasmid pSal8934a, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

70. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032888 (Escherichia coli strain SCEC020022 plasmid pCTXM14_020022, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

71. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NC_021155 (Salmonella enterica subsp. enterica serovar Typhimurium str. U288 plasmid pSTU288-1, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

72. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036203 (Escherichia coli strain L725 plasmid punnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

73. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041441 (Escherichia coli strain YPE12 plasmid pYPE12-122k, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

74. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH674341 (Escherichia coli strain EC07 plasmid pUR-EC07, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

75. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MN241905 (Salmonella enterica subsp. enterica serovar Typhimurium strain STM3224 plasmid pUY_STM96, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

76. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to MN262643 (Escherichia coli strain EC009 plasmid pEC009.2, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

77. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH626559 (Salmonella enterica subsp. enterica serovar Typhimurium strain ST1007 plasmid pST1007-1C, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

78. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH626558 (Salmonella enterica subsp. enterica serovar Typhimurium strain ST1007 plasmid pST1007-1B, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

79. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY748189 (Escherichia coli strain EC007 plasmid pEC007, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

80. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY865323 (Escherichia coli strain SY286M plasmid pECM13, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

81. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY748188 (Escherichia coli strain EC006 plasmid pEC006, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

82. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY748190 (Escherichia coli strain EC008 plasmid pEC008, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

83. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF344576 (Escherichia coli strain 15061806 plasmid p61806-CTXM, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

84. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH257753 (Salmonella enterica subsp. enterica serovar Typhimurium strain 1007 plasmid pST1007-1A, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

85. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH648141 (Salmonella enterica subsp. enterica serovar Typhimurium strain ST1007 plasmid pST1007-1D, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

86. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG878866 (Escherichia coli strain Ec19397 plasmid pEc19397-131, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

87. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to MN548042 (Klebsiella pneumoniae strain QD23 plasmid pQD23-1, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

88. spacer 1.8|159835|30|CP032757|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040536 (Klebsiella pneumoniae strain CR-HvKP1 plasmid pCR-HvKP1-p3, complete sequence) position: , mismatch: 9, identity: 0.7

ttgctgttaagctaactggcgacatgagca	CRISPR spacer
cccttgttaagctaaatggcgacaggactg	Protospacer
.. .*********** ******** ** ..

89. spacer 3.12|1308523|31|CP032757|PILER-CR matches to NZ_CP040502 (Lactobacillus paragasseri JV-V03 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.71

aaatatgttgaccggtatcgggcgggtaaca	CRISPR spacer
caatattttgaccggtatcggtcgtgccttc	Protospacer
 ***** ************** ** *.  .

90. spacer 3.13|1308584|31|CP032757|PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.71

agcgttcctttttggcgcgggattgttattc	CRISPR spacer
ggcgttcatttttcgcgcgggattctcgacg	Protospacer
.****** ***** ********** *.. .

91. spacer 6.10|1599244|33|CP032757|CRISPRCasFinder,CRT,PILER-CR matches to NC_007603 (Enterobacteria phage RTP, complete genome) position: , mismatch: 9, identity: 0.727

aagcagttcctaacggttatttgtttaagaatg	CRISPR spacer
agttagttcctgacggttatttggttaagggaa	Protospacer
*. .*******.*********** *****.. .

92. spacer 6.10|1599244|33|CP032757|CRISPRCasFinder,CRT,PILER-CR matches to AM156909 (Bacteriophage RTP, complete genome) position: , mismatch: 9, identity: 0.727

aagcagttcctaacggttatttgtttaagaatg	CRISPR spacer
agttagttcctgacggttatttggttaagggaa	Protospacer
*. .*******.*********** *****.. .

93. spacer 3.4|1308522|32|CP032757|CRISPRCasFinder matches to NZ_CP040502 (Lactobacillus paragasseri JV-V03 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

aaaatatgttgaccggtatcgggcgggtaaca	CRISPR spacer
ccaatattttgaccggtatcggtcgtgccttc	Protospacer
  ***** ************** ** *.  .

94. spacer 3.5|1308583|32|CP032757|CRISPRCasFinder matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

gagcgttcctttttggcgcgggattgttattc	CRISPR spacer
cggcgttcatttttcgcgcgggattctcgacg	Protospacer
 .****** ***** ********** *.. .

95. spacer 7.3|1602195|32|CP032757|CRISPRCasFinder matches to NC_018516 (Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence) position: , mismatch: 10, identity: 0.688

cgatgttcttgtaataccaagcttgttctccc	CRISPR spacer
cttggttcttgtaatactaagcctgtttcggt	Protospacer
*   *************.****.****..  .

96. spacer 7.3|1602195|32|CP032757|CRISPRCasFinder matches to NZ_CP053970 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

cgatgttcttgtaataccaagcttgttctccc	CRISPR spacer
cttggttcttgtaatactaagcctgtttcggt	Protospacer
*   *************.****.****..  .

97. spacer 7.3|1602195|32|CP032757|CRISPRCasFinder matches to NZ_CP053979 (Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

cgatgttcttgtaataccaagcttgttctccc	CRISPR spacer
cttggttcttgtaatactaagcctgtttcggt	Protospacer
*   *************.****.****..  .

98. spacer 7.3|1602195|32|CP032757|CRISPRCasFinder matches to NZ_CP013277 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence) position: , mismatch: 10, identity: 0.688

cgatgttcttgtaataccaagcttgttctccc	CRISPR spacer
cttggttcttgtaatactaagcctgtttcggt	Protospacer
*   *************.****.****..  .

99. spacer 7.3|1602195|32|CP032757|CRISPRCasFinder matches to NZ_CP039723 (Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.688

cgatgttcttgtaataccaagcttgttctccc	CRISPR spacer
cttggttcttgtaatactaagcctgtttcggt	Protospacer
*   *************.****.****..  .

100. spacer 7.3|1602195|32|CP032757|CRISPRCasFinder matches to NZ_CP009348 (Bacillus thuringiensis HD1002 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.688

cgatgttcttgtaataccaagcttgttctccc	CRISPR spacer
cttggttcttgtaatactaagcctgtttcggt	Protospacer
*   *************.****.****..  .

101. spacer 7.3|1602195|32|CP032757|CRISPRCasFinder matches to NZ_CP009334 (Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.688

cgatgttcttgtaataccaagcttgttctccc	CRISPR spacer
cttggttcttgtaatactaagcctgtttcggt	Protospacer
*   *************.****.****..  .

102. spacer 7.3|1602195|32|CP032757|CRISPRCasFinder matches to NZ_CP045024 (Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.688

cgatgttcttgtaataccaagcttgttctccc	CRISPR spacer
cttggttcttgtaatactaagcctgtttcggt	Protospacer
*   *************.****.****..  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

40493 : 53200

Lactobacillus_phage(37.5%)

capsid,head,terminase,portal,integrase,tail

attL 40403:40418|attR 45481:45496

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
40403:40418	attL	NA	NA	NA	NA
AYJ40431.1\|40493_41648_-\|integrase	site-specific integrase	A0A172LN96	Lactococcus_phage	8.0e-60	36.7
AYJ40432.1\|41705_42392_-	XRE family transcriptional regulator	Q20DG0	Lactobacillus_phage	4.5e-10	56.5
AYJ40433.1\|42523_42706_+	DNA-binding protein	NA	NA	NA	NA
AYJ40434.1\|42748_42856_+	hypothetical protein	NA	NA	NA	NA
AYJ40435.1\|42974_43205_+	hypothetical protein	NA	NA	NA	NA
AYJ40436.1\|43218_44019_+	DNA replication protein	NA	NA	NA	NA
AYJ40437.1\|44018_45413_+	virulence protein	Q4ZD27	Staphylococcus_phage	1.5e-68	36.0
AYJ40438.1\|45559_45979_+	hypothetical protein	NA	NA	NA	NA
45481:45496	attR	NA	NA	NA	NA
AYJ40439.1\|46002_46305_+	hypothetical protein	NA	NA	NA	NA
AYJ40440.1\|46304_46643_+\|head,tail	head-tail adaptor protein	A0A2P0ZLF0	Lactobacillus_phage	1.9e-09	36.0
AYJ40441.1\|46635_47034_+	HNH endonuclease	A0A1J0MFT4	Staphylococcus_phage	9.0e-19	44.7
AYJ40442.1\|47862_48336_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
AYJ40443.1\|48332_50036_+\|terminase	terminase large subunit	A0A2H4JBN3	uncultured_Caudovirales_phage	3.7e-122	40.7
AYJ40444.1\|49989_50190_+	hypothetical protein	NA	NA	NA	NA
AYJ40445.1\|50190_51291_+\|portal	phage portal protein	A0A2H4J9Q5	uncultured_Caudovirales_phage	6.1e-49	34.3
AYJ40446.1\|51287_52817_+\|capsid	phage major capsid protein	B8R651	Lactobacillus_phage	4.8e-44	25.5
AYJ40447.1\|52930_53200_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA

DBSCAN-SWA_2

606171 : 711428

102

Lactobacillus_phage(72.09%)

protease,holin,tail,tRNA,transposase,capsid,terminase,portal,integrase,head

attL 608983:608998|attR 652467:652482

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYJ40903.1\|606171_607095_-\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	6.7e-33	31.9
AYJ40904.1\|607112_607292_+	hypothetical protein	NA	NA	NA	NA
AYJ40905.1\|607302_608901_-	APC family permease	NA	NA	NA	NA
608983:608998	attL	NA	NA	NA	NA
AYJ40906.1\|609268_610312_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	7.5e-33	34.3
AYJ40907.1\|610396_610933_-	hypothetical protein	NA	NA	NA	NA
AYJ40908.1\|611244_611451_-	hypothetical protein	NA	NA	NA	NA
AYJ40909.1\|612563_612881_+	cupin domain-containing protein	NA	NA	NA	NA
AYJ40910.1\|612925_613261_+	cupin domain-containing protein	NA	NA	NA	NA
AYJ40911.1\|613293_614121_+	serine/threonine protein phosphatase	NA	NA	NA	NA
AYJ40912.1\|614254_615355_-	anion permease	NA	NA	NA	NA
AYJ40913.1\|615634_616447_-	ribosyl nicotinamide transporter	A0A291I9M7	Lactobacillus_phage	4.5e-49	41.5
AYJ40914.1\|616811_617600_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	1.1e-28	34.7
AYJ40915.1\|617680_618817_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
AYJ40916.1\|618840_619542_+	GntR family transcriptional regulator	NA	NA	NA	NA
AYJ40917.1\|619680_620418_-	glycosyltransferase	NA	NA	NA	NA
AYJ40918.1\|620575_622054_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	6.6e-107	44.1
AYJ40919.1\|622053_622881_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	1.2e-73	55.4
AYJ43455.1\|624444_627099_+	cation-translocating P-type ATPase	M1I547	Acanthocystis_turfacea_Chlorella_virus	2.7e-71	30.2
AYJ40920.1\|627154_627589_+	hypothetical protein	NA	NA	NA	NA
AYJ40921.1\|628009_630190_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
AYJ40922.1\|630182_630641_+	SprT family protein	NA	NA	NA	NA
AYJ40923.1\|630693_631980_+	homoserine dehydrogenase	NA	NA	NA	NA
AYJ40924.1\|631988_632864_+	homoserine kinase	NA	NA	NA	NA
AYJ40925.1\|633166_634324_-\|integrase	site-specific integrase	A0A2P0ZL94	Lactobacillus_phage	1.8e-213	96.1
AYJ40926.1\|634494_634857_-	hypothetical protein	E9LUS2	Lactobacillus_phage	1.1e-58	95.8
AYJ40927.1\|635014_635203_-	hypothetical protein	E9LUS5	Lactobacillus_phage	2.1e-26	100.0
AYJ40928.1\|635780_635963_-	hypothetical protein	A0A2P0ZL93	Lactobacillus_phage	6.7e-14	65.5
AYJ40929.1\|636449_636656_-	hypothetical protein	E9LUS6	Lactobacillus_phage	5.1e-26	100.0
AYJ43456.1\|636705_637098_-	ImmA/IrrE family metallo-endopeptidase	D6PSS8	Lactobacillus_phage	1.8e-35	55.6
AYJ40930.1\|637128_637455_-	XRE family transcriptional regulator	E3W8B9	Leuconostoc_phage	2.1e-18	46.1
AYJ40931.1\|637713_637935_+	hypothetical protein	NA	NA	NA	NA
AYJ40932.1\|637931_638648_+	phage regulatory protein	D2IYT0	Enterococcus_phage	2.0e-69	61.7
AYJ40933.1\|638659_638869_+	hypothetical protein	NA	NA	NA	NA
AYJ40934.1\|638984_639311_-	RNA polymerase III	E9LUT2	Lactobacillus_phage	4.1e-54	99.1
AYJ40935.1\|639378_639657_+	hypothetical protein	A0A2P0ZLA9	Lactobacillus_phage	1.7e-32	78.2
AYJ40936.1\|639791_640031_+	tagatose-bisphosphate aldolase	E9LUT6	Lactobacillus_phage	2.2e-33	82.4
AYJ40937.1\|640042_640243_+	hypothetical protein	E9LUT7	Lactobacillus_phage	5.8e-27	90.9
AYJ40938.1\|640254_640485_+	hypothetical protein	E9LUT8	Lactobacillus_phage	1.6e-28	86.3
AYJ40939.1\|640698_641004_+	hypothetical protein	NA	NA	NA	NA
AYJ40940.1\|641023_641716_+	hypothetical protein	E9LUU3	Lactobacillus_phage	2.5e-117	88.7
AYJ40941.1\|641765_642569_+	replisome organizer	E9LUM6	Lactobacillus_phage	6.4e-40	56.9
AYJ40942.1\|642562_643438_+	ATP-binding protein	A0A0P0I3L9	Lactobacillus_phage	6.3e-49	41.2
AYJ40943.1\|643594_643903_+	hypothetical protein	E9LUN7	Lactobacillus_phage	4.8e-44	86.3
AYJ40944.1\|643895_644063_+	hypothetical protein	A0A2P0ZLB5	Lactobacillus_phage	1.1e-15	83.6
AYJ40945.1\|644586_644820_+	hypothetical protein	NA	NA	NA	NA
AYJ40946.1\|645065_645494_+	transcriptional regulator	E9LUP5	Lactobacillus_phage	8.3e-55	73.8
AYJ40947.1\|646995_647190_+	hypothetical protein	NA	NA	NA	NA
AYJ40948.1\|647186_647432_+	hypothetical protein	NA	NA	NA	NA
AYJ40949.1\|647431_647788_+	hypothetical protein	NA	NA	NA	NA
AYJ40950.1\|647792_648299_+	HNH endonuclease	A8YQN7	Lactobacillus_phage	3.9e-43	53.3
AYJ40951.1\|648371_648902_+\|terminase	phage terminase small subunit P27 family	Q6J1Y7	Lactobacillus_phage	6.8e-22	40.3
AYJ40952.1\|648894_650772_+\|terminase	terminase large subunit	A8YQI8	Lactobacillus_phage	9.8e-225	61.4
AYJ40953.1\|650961_652134_+\|portal	phage portal protein	Q6J1Y4	Lactobacillus_phage	2.2e-121	56.8
AYJ40954.1\|652130_652808_+\|protease	Clp protease ClpP	A8YQJ1	Lactobacillus_phage	9.5e-53	50.0
652467:652482	attR	NA	NA	NA	NA
AYJ40955.1\|652808_654002_+\|capsid	phage major capsid protein	Q6J1Y2	Lactobacillus_phage	1.1e-109	57.2
AYJ40956.1\|654027_654399_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
AYJ40957.1\|654382_654730_+	hypothetical protein	A0A0M7RFE1	Lactobacillus_phage	1.1e-07	32.7
AYJ40958.1\|654722_655160_+\|tail	phage tail protein	NA	NA	NA	NA
AYJ40959.1\|655156_655531_+	DUF806 family protein	NA	NA	NA	NA
AYJ40960.1\|655545_655893_+	hypothetical protein	NA	NA	NA	NA
AYJ40961.1\|655896_656169_+	hypothetical protein	NA	NA	NA	NA
AYJ40962.1\|656192_657077_+	hypothetical protein	A0A0P0IJL6	Lactobacillus_phage	3.9e-107	62.2
AYJ40963.1\|657092_657419_+	hypothetical protein	NA	NA	NA	NA
AYJ40964.1\|657463_657646_+	hypothetical protein	NA	NA	NA	NA
AYJ40965.1\|657660_663312_+\|tail	phage tail tape measure protein	Q9AZS0	Lactococcus_phage	3.1e-72	43.2
AYJ40966.1\|663324_666177_+	hypothetical protein	NA	NA	NA	NA
AYJ40967.1\|666188_668621_+	hypothetical protein	U3PBG0	Lactobacillus_phage	1.7e-67	29.0
AYJ40968.1\|668640_670602_+	hypothetical protein	A0A1I9KK49	Lactobacillus_phage	2.2e-57	44.4
AYJ40969.1\|671103_672225_+	hypothetical protein	O03950	Lactobacillus_phage	1.8e-72	44.4
AYJ40970.1\|672225_672474_+\|holin	holin	E9LUR9	Lactobacillus_phage	6.6e-12	48.3
AYJ40971.1\|672485_673037_+\|holin	holin	E9LUS0	Lactobacillus_phage	5.9e-29	72.3
AYJ40972.1\|673327_673894_+	hypothetical protein	NA	NA	NA	NA
AYJ40973.1\|673914_674418_+	hypothetical protein	NA	NA	NA	NA
AYJ40974.1\|674436_674853_+	hypothetical protein	NA	NA	NA	NA
AYJ40975.1\|675721_676540_+	hypothetical protein	NA	NA	NA	NA
AYJ40976.1\|676873_677071_+	hypothetical protein	NA	NA	NA	NA
AYJ40977.1\|677607_678474_+	hypothetical protein	NA	NA	NA	NA
AYJ40978.1\|678766_679741_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
AYJ40979.1\|679776_680586_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA
AYJ40980.1\|680604_681537_+	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA
AYJ40981.1\|681670_682057_+	DUF956 family protein	NA	NA	NA	NA
AYJ40982.1\|682355_685208_+	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA
AYJ40983.1\|685278_685698_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
AYJ40984.1\|685694_686228_+	PTS fructose transporter subunit IIB	NA	NA	NA	NA
AYJ40985.1\|686470_687442_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
AYJ40986.1\|687457_687934_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
AYJ40987.1\|687936_689259_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
AYJ40988.1\|689255_690059_+	acetyl-CoA carboxyl transferase	NA	NA	NA	NA
AYJ40989.1\|690051_690825_+	hypothetical protein	NA	NA	NA	NA
AYJ40990.1\|691960_693154_-	LytR family transcriptional regulator	NA	NA	NA	NA
AYJ40991.1\|693461_694424_+	AEC family transporter	NA	NA	NA	NA
AYJ40992.1\|694736_695771_+	EamA family transporter	NA	NA	NA	NA
AYJ40993.1\|695975_696653_+	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
AYJ40994.1\|698018_698711_+	peptidase M10	NA	NA	NA	NA
AYJ40995.1\|700020_701352_-	aminopeptidase	R4TV59	Phaeocystis_globosa_virus	3.7e-69	33.8
AYJ40996.1\|701427_702111_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
AYJ40997.1\|702120_702417_-	N-acetyltransferase	NA	NA	NA	NA
AYJ43457.1\|703015_703552_+	dUTP diphosphatase	J9PV85	Bacillus_phage	9.2e-35	45.3
AYJ40998.1\|703688_705068_+	DNA repair protein RadA	NA	NA	NA	NA
AYJ40999.1\|705086_706292_+	PIN/TRAM domain-containing protein	NA	NA	NA	NA
AYJ43458.1\|707343_708834_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
AYJ41000.1\|710012_711428_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	1.1e-45	30.1

DBSCAN-SWA_3

733648 : 742399

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYJ41025.1\|733648_735352_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	2.0e-54	36.7
AYJ41026.1\|735373_735682_+	nucleoid-associated protein, YbaB/EbfC family	NA	NA	NA	NA
AYJ41027.1\|735697_736297_+	recombination protein RecR	NA	NA	NA	NA
AYJ41028.1\|736312_736564_+	DUF2508 family protein	NA	NA	NA	NA
AYJ41029.1\|737062_737728_+	dTMP kinase	M1PSC7	Streptococcus_phage	5.8e-55	53.7
AYJ41030.1\|737724_738054_+	hypothetical protein	NA	NA	NA	NA
AYJ41031.1\|738097_739117_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	6.9e-31	33.1
AYJ41032.1\|739141_739489_+	initiation-control protein YabA	M1PFV3	Streptococcus_phage	1.1e-12	34.3
AYJ41033.1\|739585_740482_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	3.4e-82	55.7
AYJ41034.1\|740485_741271_+	acyl-ACP thioesterase	NA	NA	NA	NA
AYJ41035.1\|741403_742399_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.1e-52	38.5

DBSCAN-SWA_4

1389265 : 1447281

Lactobacillus_phage(88.46%)

protease,capsid,transposase,terminase,portal,integrase,tail,lysis

attL 1376067:1376082|attR 1423542:1423557

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1376067:1376082	attL	NA	NA	NA	NA
AYJ41552.1\|1389265_1389952_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AYJ41553.1\|1390485_1390965_-	MarR family transcriptional regulator	NA	NA	NA	NA
AYJ41554.1\|1391075_1391588_-	hypothetical protein	NA	NA	NA	NA
AYJ41555.1\|1391706_1391994_+	hypothetical protein	NA	NA	NA	NA
AYJ41556.1\|1392047_1394315_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	2.6e-118	30.8
AYJ41557.1\|1394860_1395979_+	hypothetical protein	NA	NA	NA	NA
AYJ41558.1\|1396011_1406577_+	DUF5011 domain-containing protein	NA	NA	NA	NA
AYJ41559.1\|1406986_1408117_-\|integrase	site-specific integrase	A0A0M9JJ77	Lactobacillus_phage	2.7e-92	48.2
AYJ41560.1\|1408229_1408592_-	hypothetical protein	E9LUS2	Lactobacillus_phage	1.3e-56	91.7
AYJ41561.1\|1408822_1409446_-	hypothetical protein	NA	NA	NA	NA
AYJ41562.1\|1409555_1410122_-	hypothetical protein	A0A2P0ZL99	Lactobacillus_phage	4.0e-65	69.0
AYJ41563.1\|1410216_1410648_-	hypothetical protein	A0A2P0ZLA0	Lactobacillus_phage	7.6e-80	100.0
AYJ41564.1\|1410657_1411038_-	XRE family transcriptional regulator	A0A2P0ZLA1	Lactobacillus_phage	7.2e-42	66.9
AYJ41565.1\|1411308_1411491_+	XRE family transcriptional regulator	Q5YAA3	Bacillus_phage	5.2e-14	60.0
AYJ41566.1\|1411503_1412313_+	hypothetical protein	Q9T1J2	Lactobacillus_phage	3.2e-47	62.3
AYJ41567.1\|1412309_1412513_+	hypothetical protein	A0A2P0ZLA4	Lactobacillus_phage	1.1e-28	94.0
AYJ41568.1\|1412512_1412851_+	DUF771 domain-containing protein	E9LUT3	Lactobacillus_phage	1.9e-30	67.8
AYJ41569.1\|1412964_1413204_+	tagatose-bisphosphate aldolase	E9LUT6	Lactobacillus_phage	3.5e-34	83.5
AYJ41570.1\|1413215_1413416_+	hypothetical protein	E9LUT7	Lactobacillus_phage	3.4e-27	90.9
AYJ41571.1\|1413594_1414011_+	hypothetical protein	NA	NA	NA	NA
AYJ41572.1\|1414183_1415044_+	DUF1351 domain-containing protein	A0A0P0IV40	Lactobacillus_phage	4.4e-39	34.7
AYJ41573.1\|1415043_1415670_+	single-stranded DNA-binding protein	D7RWM8	Brochothrix_phage	2.3e-13	37.4
AYJ41574.1\|1415666_1416128_+	single-stranded DNA-binding protein	A0A218MNB4	uncultured_virus	1.1e-39	70.9
AYJ41575.1\|1416142_1416835_+	hypothetical protein	E9LUU3	Lactobacillus_phage	1.5e-117	88.7
AYJ41576.1\|1417648_1418434_+	ATP-binding protein	E9LUN6	Lactobacillus_phage	1.0e-143	98.5
AYJ41577.1\|1418569_1418872_+	hypothetical protein	E9LUN7	Lactobacillus_phage	1.0e-43	88.0
AYJ41578.1\|1418874_1419186_+	hypothetical protein	A0A2P0ZLB4	Lactobacillus_phage	7.2e-48	90.3
AYJ41579.1\|1419189_1419348_+	hypothetical protein	A0A2P0ZLB5	Lactobacillus_phage	1.1e-17	90.4
AYJ41580.1\|1419674_1420109_+	hypothetical protein	Q5ULU9	Lactobacillus_virus	2.0e-43	62.4
AYJ41581.1\|1420105_1420591_+	DUF1642 domain-containing protein	A0A2P0ZLB8	Lactobacillus_phage	1.9e-18	42.4
AYJ41582.1\|1420721_1421033_+	hypothetical protein	A0A2P0ZLD0	Lactobacillus_phage	8.5e-49	93.2
AYJ41583.1\|1421044_1421458_+	hypothetical protein	A0A2P0ZLC0	Lactobacillus_phage	2.2e-68	96.4
AYJ41584.1\|1421573_1422563_+	hypothetical protein	A0A2P0ZLD4	Lactobacillus_phage	3.8e-183	98.2
AYJ41585.1\|1422643_1423366_+	hypothetical protein	A0A2P0ZLC7	Lactobacillus_phage	4.3e-128	97.9
AYJ41586.1\|1423569_1424034_+	hypothetical protein	NA	NA	NA	NA
1423542:1423557	attR	NA	NA	NA	NA
AYJ41587.1\|1424096_1424333_+	hypothetical protein	A0A2P0ZLC2	Lactobacillus_phage	1.8e-22	77.1
AYJ41588.1\|1424316_1424655_+	HNH endonuclease	A0A2P0ZLC6	Lactobacillus_phage	4.4e-59	92.0
AYJ41589.1\|1424654_1424897_+	hypothetical protein	A0A2P0ZLD3	Lactobacillus_phage	2.5e-32	82.5
AYJ41590.1\|1424914_1425157_+	hypothetical protein	A0A2P0ZLD2	Lactobacillus_phage	9.9e-37	92.5
AYJ43465.1\|1425267_1425555_+	hypothetical protein	A0A2P0ZLC8	Lactobacillus_phage	2.2e-43	96.8
AYJ41591.1\|1425551_1427231_+\|terminase	terminase large subunit	A0A2P0ZLE5	Lactobacillus_phage	0.0e+00	98.6
AYJ41592.1\|1427249_1428392_+\|portal	phage portal protein	A0A2P0ZLC9	Lactobacillus_phage	6.9e-213	97.4
AYJ41593.1\|1428378_1429101_+\|protease	Clp protease ClpP	A0A2P0ZLE3	Lactobacillus_phage	5.3e-94	74.6
AYJ41594.1\|1429123_1430296_+\|capsid	phage major capsid protein	A0A2P0ZLD6	Lactobacillus_phage	1.7e-110	54.8
AYJ43466.1\|1430467_1430725_+	hypothetical protein	A0A2P0ZLD5	Lactobacillus_phage	4.2e-38	95.3
AYJ41595.1\|1430705_1431095_+	hypothetical protein	A0A2P0ZLD1	Lactobacillus_phage	5.8e-63	89.1
AYJ41596.1\|1431091_1431499_+	hypothetical protein	A0A2P0ZLD7	Lactobacillus_phage	7.7e-66	93.3
AYJ41597.1\|1431495_1431918_+	hypothetical protein	A0A2P0ZLE4	Lactobacillus_phage	6.3e-71	97.9
AYJ41598.1\|1431932_1432544_+\|tail	phage tail protein	A0A2P0ZLF5	Lactobacillus_phage	9.6e-105	96.1
AYJ41599.1\|1432637_1432952_+	hypothetical protein	A0A2P0ZLF3	Lactobacillus_phage	2.4e-51	96.2
AYJ41600.1\|1432954_1433197_+\|tail	phage tail tape measure protein	A0A2P0ZLD9	Lactobacillus_phage	3.3e-32	98.6
AYJ41601.1\|1433215_1437760_+\|tail	phage tail tape measure protein	A0A2P0ZLF1	Lactobacillus_phage	0.0e+00	92.7
AYJ41602.1\|1438605_1441647_+	hypothetical protein	A0A2P0ZLE1	Lactobacillus_phage	1.9e-241	69.6
AYJ41603.1\|1441653_1442577_-\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	6.7e-33	31.9
AYJ41604.1\|1442594_1444550_+	hypothetical protein	A0A2P0ZLE1	Lactobacillus_phage	2.4e-242	77.3
AYJ41605.1\|1444567_1445059_+	DUF1617 family protein	A0A2P0ZLE0	Lactobacillus_phage	3.0e-48	63.1
AYJ41606.1\|1445060_1445507_+	hypothetical protein	A0A2P0ZLE9	Lactobacillus_phage	9.3e-57	78.5
AYJ41607.1\|1445511_1445895_+	hypothetical protein	A0A2P0ZLF7	Lactobacillus_phage	1.9e-66	96.9
AYJ41608.1\|1445897_1446092_+	hypothetical protein	A0A2P0ZLG4	Lactobacillus_phage	1.0e-23	96.9
AYJ41609.1\|1446091_1446376_+\|lysis	lysis protein	A0A2P0ZLE8	Lactobacillus_phage	3.1e-42	98.9
AYJ41610.1\|1446375_1447281_+	lysin	A0A2P0ZLG2	Lactobacillus_phage	9.9e-114	92.0

DBSCAN-SWA_5

1489908 : 1499152

Lactobacillus_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYJ41643.1\|1489908_1491069_+	hypothetical protein	A0A2P0ZL72	Lactobacillus_phage	3.0e-131	61.3
AYJ41644.1\|1491285_1492269_-	peptidase S41	A0A2P0ZL68	Lactobacillus_phage	2.2e-98	60.4
AYJ41645.1\|1492637_1493585_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	3.7e-156	86.6
AYJ41646.1\|1493877_1494492_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	6.7e-106	93.1
AYJ41647.1\|1494496_1496935_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	0.0e+00	89.3
AYJ41648.1\|1497022_1497583_+	hypothetical protein	A0A2P0ZL75	Lactobacillus_phage	1.6e-85	85.5
AYJ41649.1\|1497667_1497892_+	hypothetical protein	NA	NA	NA	NA
AYJ41650.1\|1498156_1499152_+	glycosyltransferase	F1C5B0	Cronobacter_phage	2.1e-56	40.0

DBSCAN-SWA_6

2432486 : 2468130

Lactobacillus_phage(56.52%)

holin,capsid,terminase,portal,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYJ43496.1\|2432486_2432864_-\|holin	holin	A0A2K9VCG4	Lactobacillus_phage	1.3e-14	66.2
AYJ42446.1\|2432878_2433142_-\|holin	holin	E9LUR9	Lactobacillus_phage	1.1e-36	97.7
AYJ42447.1\|2433141_2434320_-	LysM peptidoglycan-binding domain-containing protein	E9LUR8	Lactobacillus_phage	4.0e-200	89.5
AYJ42448.1\|2434331_2434871_-	hypothetical protein	A0A1S5SCY9	Streptococcus_phage	1.2e-21	33.8
AYJ42449.1\|2435541_2435676_-	XkdX family protein	NA	NA	NA	NA
AYJ42450.1\|2435668_2435938_-	hypothetical protein	NA	NA	NA	NA
AYJ42451.1\|2438599_2438845_-	hypothetical protein	NA	NA	NA	NA
AYJ42452.1\|2438837_2439965_-	hypothetical protein	O03938	Lactobacillus_phage	1.1e-72	42.6
AYJ42453.1\|2439976_2440795_-\|tail	phage tail family protein	NA	NA	NA	NA
AYJ42454.1\|2440795_2446444_-\|tail	phage tail tape measure protein	A0A1S5SFC1	Streptococcus_phage	2.9e-22	24.5
AYJ42455.1\|2446459_2447101_-	hypothetical protein	U3PFU8	Lactobacillus_phage	1.3e-06	27.5
AYJ42456.1\|2447097_2447616_-	hypothetical protein	NA	NA	NA	NA
AYJ42457.1\|2447734_2448343_-	hypothetical protein	NA	NA	NA	NA
AYJ42458.1\|2448360_2448786_-	hypothetical protein	NA	NA	NA	NA
AYJ42459.1\|2448785_2449187_-	hypothetical protein	NA	NA	NA	NA
AYJ42460.1\|2449183_2449573_-	hypothetical protein	NA	NA	NA	NA
AYJ42461.1\|2449573_2449978_-	hypothetical protein	A5GYM1	Lactococcus_phage	2.6e-05	27.5
AYJ42462.1\|2450337_2451285_-\|capsid	N4-gp56 family major capsid protein	A8ASJ6	Listeria_phage	1.8e-89	59.5
AYJ42463.1\|2451298_2451901_-	hypothetical protein	NA	NA	NA	NA
AYJ42464.1\|2451964_2453167_-	hypothetical protein	A0A059T7W2	Listeria_phage	9.0e-38	31.0
AYJ42465.1\|2453042_2454593_-\|portal	phage portal protein	B5LPR1	Bacillus_virus	2.6e-82	38.2
AYJ42466.1\|2454640_2455966_-\|terminase	PBSX family phage terminase large subunit	A0A1S5SA45	Streptococcus_phage	1.2e-139	55.8
AYJ42467.1\|2455940_2456456_-	helix-turn-helix domain-containing protein	A0A2H4IYT3	uncultured_Caudovirales_phage	4.6e-07	36.8
AYJ42468.1\|2456641_2456839_-	hypothetical protein	NA	NA	NA	NA
AYJ42469.1\|2457002_2457629_-	hypothetical protein	NA	NA	NA	NA
AYJ42470.1\|2458289_2458751_-	transcriptional regulator	D6PSV8	Lactobacillus_phage	1.1e-39	57.0
AYJ42471.1\|2458832_2459066_-	hypothetical protein	NA	NA	NA	NA
AYJ42472.1\|2459097_2459265_-	hypothetical protein	E9LUP4	Lactobacillus_phage	5.2e-13	90.9
AYJ42473.1\|2459276_2459528_-	hypothetical protein	NA	NA	NA	NA
AYJ42474.1\|2459524_2459659_-	hypothetical protein	O03917	Lactobacillus_phage	2.0e-15	90.7
AYJ42475.1\|2459648_2460032_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA
AYJ42476.1\|2460028_2460547_-	hypothetical protein	O03915	Lactobacillus_phage	1.9e-37	53.9
AYJ43497.1\|2460551_2461274_-	oxidoreductase	Q8SDM9	Staphylococcus_phage	2.8e-50	45.6
AYJ42477.1\|2461430_2462273_-	ATP-binding protein	O03914	Lactobacillus_phage	1.4e-151	96.1
AYJ42478.1\|2462253_2463060_-	DNA replication protein DnaD	NA	NA	NA	NA
AYJ42479.1\|2463140_2464013_-	hypothetical protein	A0A0P0IZH9	Lactobacillus_phage	2.8e-73	50.0
AYJ42480.1\|2463924_2464824_-	recombinase RecT	E9LUM3	Lactobacillus_phage	1.2e-63	53.3
AYJ43498.1\|2464826_2465225_-	hypothetical protein	NA	NA	NA	NA
AYJ42481.1\|2465405_2465576_-	hypothetical protein	NA	NA	NA	NA
AYJ42482.1\|2465643_2466156_-	transcriptional regulator	D6PST4	Lactobacillus_phage	3.2e-29	44.7
AYJ42483.1\|2466222_2466528_-	DUF771 domain-containing protein	NA	NA	NA	NA
AYJ42484.1\|2466788_2467070_+	hypothetical protein	NA	NA	NA	NA
AYJ42485.1\|2467226_2467481_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AYJ42486.1\|2467626_2468130_+	XRE family transcriptional regulator	S6C481	Thermus_phage	2.2e-22	43.2

DBSCAN-SWA_7

2716926 : 2725440

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYJ42694.1\|2716926_2717505_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.1e-20	33.3
AYJ42695.1\|2717497_2718523_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	9.3e-60	40.7
AYJ42696.1\|2718519_2719974_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.5e-50	34.2
AYJ42697.1\|2719958_2722178_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	9.1e-145	41.0
AYJ42698.1\|2722170_2722851_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AYJ42699.1\|2722850_2723105_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AYJ42700.1\|2723106_2723838_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3G7P8	Synechococcus_phage	2.9e-39	39.9
AYJ42701.1\|2723840_2724971_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AYJ42702.1\|2724954_2725440_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.7e-16	40.4

DBSCAN-SWA_8

3239414 : 3249273

Streptococcus_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYJ43127.1\|3239414_3240533_-	glycerate kinase	W6LM47	Streptococcus_phage	6.4e-38	37.1
AYJ43128.1\|3240669_3242004_+	NAD(P)/FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	3.9e-26	27.3
AYJ43129.1\|3243101_3244400_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	3.8e-18	33.6
AYJ43130.1\|3244716_3246006_+	adenylosuccinate synthase	L7Y4J5	Megavirus	1.0e-71	36.8
AYJ43131.1\|3246049_3247027_+	GMP reductase	Q4ZCY7	Staphylococcus_virus	2.2e-135	70.9
AYJ43132.1\|3247244_3248192_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	5.1e-20	30.5
AYJ43133.1\|3248181_3249273_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.3e-13	31.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP032758

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

33254 : 43255

Enterococcus_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYJ43555.1\|33254_35423_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	8.1e-255	60.3
AYJ43556.1\|35529_36456_+	ribonucleoside-diphosphate reductase	A0A2H4P8A9	Corynebacterium_phage	5.9e-37	32.1
AYJ43557.1\|36470_37421_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	9.4e-99	54.6
AYJ43558.1\|37549_38296_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	6.6e-15	29.4
AYJ43559.1\|38474_39107_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	8.1e-14	32.6
AYJ43560.1\|39193_40096_+	YitT family protein	M1Q1P6	Streptococcus_phage	1.1e-51	40.3
AYJ43561.1\|40681_41029_-	hypothetical protein	NA	NA	NA	NA
AYJ43562.1\|41030_41831_-	ParA family protein	F0PIG8	Enterococcus_phage	1.6e-67	50.6
AYJ43563.1\|42261_42468_-	hypothetical protein	NA	NA	NA	NA
AYJ43564.1\|42682_42961_+	hypothetical protein	NA	NA	NA	NA
AYJ43565.1\|43072_43255_-	hypothetical protein	A0A2P0ZLG6	Lactobacillus_phage	2.7e-07	66.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP032757

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP032758

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection