CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026979	Pectobacterium parmentieri strain IFB5432 chromosome, complete genome	7 crisprs	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3,csa3,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,WYL	2	36	7	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP026979_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026979_1

39762-39869

Orphan

Consensus_repeat	Method
TCAACGTCGCTTGCGACGGCCCGAGGGGTGACGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026979_1

>merge|CP026979|1|39762-39869|CRISPRCasFinder
TCAACGTCGCTTGCGACGGCCCGAGGGGTGACGGATAAGGGAGGTCGTCATAAAAAAACGTGGGGAACGTTTCTCAACGTCGCTTGCGACGGCCCGAAGGGTGACGGA

>CP026979|1|1|39762-39869|CRISPRCasFinder
TCAACGTCGCTTGCGACGGCCCGAGGGGTGACGGA	TAAGGGAGGTCGTCATAAAAAAACGTGGGGAACGTTTC
TCAACGTCGCTTGCGACGGCCCGAAGGGTGACGGA

Protein	Signature genes	Signature genes Name	Protein_function
CP026979.1\|AYH30204.1\|35244_36267_-\|aliphatic-sulfonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|236929
CP026979.1\|AYH30216.1\|49988_50711_+\|two-component-system-response-regulator-DcuR	unknown	unknown	gnl\|CDD\|182454
CP026979.1\|AYH30205.1\|36665_36989_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906
CP026979.1\|AYH30212.1\|43725_44340_-\|hypothetical-protein	unknown	unknown	unknown
CP026979.1\|AYH30203.1\|34043_35186_-\|alkanesulfonate-monooxygenase,-FMNH(2)-dependent	unknown	unknown	gnl\|CDD\|234821
CP026979.1\|AYH30214.1\|46761_48174_+\|anion-permease	unknown	unknown	gnl\|CDD\|279307
CP026979.1\|AYH30209.1\|41821_42214_-\|YceK/YidQ-family-lipoprotein	unknown	unknown	gnl\|CDD\|183233
CP026979.1\|AYH30202.1\|33238_34033_-\|aliphatic-sulfonate-ABC-transporter-permease-SsuC	unknown	unknown	gnl\|CDD\|183100
CP026979.1\|AYH30198.1\|28928_30077_+\|galactonate-dehydratase	unknown	unknown	gnl\|CDD\|184455
CP026979.1\|AYH30206.1\|36985_38302_+\|PTS-cellobiose-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
CP026979.1\|AYH30210.1\|42603_43017_+\|heat-shock-protein-IbpA	unknown	unknown	gnl\|CDD\|182691
CP026979.1\|AYH30215.1\|48367_49996_+\|two-component-system-sensor-histidine-kinase-DcuS	unknown	unknown	gnl\|CDD\|236839
CP026979.1\|AYH30208.1\|39994_40252_-\|DUF1471-domain-containing-protein	unknown	unknown	gnl\|CDD\|137782
CP026979.1\|AYH34362.1\|40656_41775_+\|biopolymer-transporter-Tol	unknown	unknown	gnl\|CDD\|372193
CP026979.1\|AYH30200.1\|32011_32269_-\|DUF1471-domain-containing-protein	unknown	unknown	gnl\|CDD\|137782
CP026979.1\|AYH30211.1\|43159_43612_+\|heat-shock-chaperone-IbpB	unknown	unknown	gnl\|CDD\|183223
CP026979.1\|AYH30207.1\|38327_39725_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|225343
CP026979.1\|AYH30201.1\|32441_33242_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183055
CP026979.1\|AYH30213.1\|44577_46236_+\|putative-transporter	unknown	unknown	gnl\|CDD\|179654
CP026979.1\|AYH30199.1\|30614_31904_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326

Protein	Function_ID	Function_description	E-value
CP026979.1\|AYH30204.1\|35244_36267_-\|aliphatic-sulfonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|236929	PRK11553, PRK11553, alkanesulfonate transporter substrate-binding subunit; Provisional.	0
CP026979.1\|AYH30216.1\|49988_50711_+\|two-component-system-response-regulator-DcuR	gnl\|CDD\|182454	PRK10430, PRK10430, two-component system response regulator DcuR.	1.25661e-164
CP026979.1\|AYH30205.1\|36665_36989_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	6.37949e-47
CP026979.1\|AYH30203.1\|34043_35186_-\|alkanesulfonate-monooxygenase,-FMNH(2)-dependent	gnl\|CDD\|234821	PRK00719, PRK00719, alkanesulfonate monooxygenase; Provisional.	0
CP026979.1\|AYH30214.1\|46761_48174_+\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	1.15657e-143
CP026979.1\|AYH30209.1\|41821_42214_-\|YceK/YidQ-family-lipoprotein	gnl\|CDD\|183233	PRK11616, PRK11616, hypothetical protein; Provisional.	8.75152e-53
CP026979.1\|AYH30202.1\|33238_34033_-\|aliphatic-sulfonate-ABC-transporter-permease-SsuC	gnl\|CDD\|183100	PRK11365, ssuC, aliphatic sulfonate ABC transporter permease SsuC.	2.65449e-143
CP026979.1\|AYH30198.1\|28928_30077_+\|galactonate-dehydratase	gnl\|CDD\|184455	PRK14017, PRK14017, galactonate dehydratase; Provisional.	0
CP026979.1\|AYH30206.1\|36985_38302_+\|PTS-cellobiose-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	1.34005e-141
CP026979.1\|AYH30210.1\|42603_43017_+\|heat-shock-protein-IbpA	gnl\|CDD\|182691	PRK10743, PRK10743, heat shock chaperone IbpA.	2.18569e-97
CP026979.1\|AYH30215.1\|48367_49996_+\|two-component-system-sensor-histidine-kinase-DcuS	gnl\|CDD\|236839	PRK11086, PRK11086, sensory histidine kinase DcuS; Provisional.	0
CP026979.1\|AYH30208.1\|39994_40252_-\|DUF1471-domain-containing-protein	gnl\|CDD\|137782	PRK10259, PRK10259, hypothetical protein; Provisional.	2.21058e-12
CP026979.1\|AYH34362.1\|40656_41775_+\|biopolymer-transporter-Tol	gnl\|CDD\|372193	pfam12566, DUF3748, Protein of unknown function (DUF3748). This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.	2.55828e-73
CP026979.1\|AYH30200.1\|32011_32269_-\|DUF1471-domain-containing-protein	gnl\|CDD\|137782	PRK10259, PRK10259, hypothetical protein; Provisional.	5.41633e-18
CP026979.1\|AYH30211.1\|43159_43612_+\|heat-shock-chaperone-IbpB	gnl\|CDD\|183223	PRK11597, PRK11597, heat shock chaperone IbpB; Provisional.	2.77815e-102
CP026979.1\|AYH30207.1\|38327_39725_+\|6-phospho-beta-glucosidase	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
CP026979.1\|AYH30201.1\|32441_33242_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183055	PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional.	2.94391e-171
CP026979.1\|AYH30213.1\|44577_46236_+\|putative-transporter	gnl\|CDD\|179654	PRK03818, PRK03818, putative transporter; Validated.	0
CP026979.1\|AYH30199.1\|30614_31904_+\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.31646e-137

>CP026979.1|AYH30207.1|38327_39725_+|6-phospho-beta-glucosidase
MHDHLQNDFRFPANFWWGSASSAPQTEGESLSYGKSATVWDEWFATQPGRFHQQVGPADTSTFYRHWREDIALLKTLNHNTFRTSISWARLIPDGVGEPNPQAVAFYNQIIDEMLAQGITPFINLFHFDMPMVMQRLGGWENRAVVVAYAGYAATCFRLFGDRVKHWFTFNEPVVPVEGGYLYDFHYPNVVDFKRAATVAYHTMLAHALAVKAYREQSQDGEIGIILNLTPSYPRSQHPADVKAANIADLMFNRSFLDPALKGEYPQELVDLLHRYGQLPSCQPDDRALLADGVVDLLGINYYQPRRIQCRDSLVNPDSPFMPEWFFSSYEMPGRKMNPYRGWEIYEPGVYDILTNLRVNYGNPRCFISENGMGVENEQRFDANGQIQDDYRIDFVREHLKYVHKGIAEGSQCLGYHMWTFIDNWSWSNAYKNRYGFVQLDLATQTRTVKKSGEWFAVVAAENGF
>CP026979.1|AYH30206.1|36985_38302_+|PTS-cellobiose-transporter-subunit-IIC
MSGLYQSMVDIIEQKITPLAGVVGQQRHIIAIRDGFIAALPFMIIGSFMLVFIFPPFSPDTTLGFARAWLDFSVAYREQLMLPYYLSMGVMTFFISVGIGASLGKHYKLDPIMTGLLALMAFLLVAAPYHDKQISTQYFSGEGIFTAILTAIYAGEVYAWLKKRNITIRLPKEVPTGVARSFEILIPVLVIVATLHPFNLFIQSATGMIIPEAIMHLLAPLISASDSLPAILISVFICQILWFAGIHGALIVTGIMNPFWMTNLALNQAALSAGAPLPHIYLQGFWDHYLLIGGVGSTLPLAFLLLRSRAVHLRTIGRMGVVPSFFNINEPILFGAPIIMNPLLFLPFIFVPMVNAVIAYTATKLGWIAQVVSLTPWTTPAPIGASWAANWAFSPVIMCLLCMVMSAAMYYPFLKVYERTLLKQEQEKQQQAAGEASA
>CP026979.1|AYH30205.1|36665_36989_+|PTS-sugar-transporter-subunit-IIB
MKRIMLCCSAGMSTSLLMRKMKEVADARGLDVEIAAYAAHEFDEQVGKYDVVLLGPQVKYMLASFKEKAEGKGVPVAAIDMMDYGMQRGDNVLDFAFSLIETSGQPL
>CP026979.1|AYH30204.1|35244_36267_-|aliphatic-sulfonate-ABC-transporter-substrate-binding-protein
MPLMMNRTVTEGCGKRTPLWKNVTAQLRRIPTILVASAVLFISTAYAQDSVPTQLRVGYQKGSVSLVLAKSHQLLEKQFPNTKISWVEFPAGPQMLEALNVGSIDLGGTGDIPPIFAQAAGADLLYVGVEPPKPQAEVILVREDSPVKTVADLKGRKVAFQKGSSAHNTLLRALQRDGLTFTDIKPTYLTPADARAAFQQGNVDAWTIWDPYYSAALLEGGVRVLVDSSGLDKTGSFYLAGRPYAEAHGSFIRQVLDELTKADALTISDRAQSVTLLANAVGLPEKVIETALDHRPPTTIKPLDAATIKAQQSTADLFYANRLVPVKVNIAERVWHPQTP
>CP026979.1|AYH30203.1|34043_35186_-|alkanesulfonate-monooxygenase,-FMNH(2)-dependent
MSLNVFWFLPTHGDGRYLGSTEGARHVDYGYLQQVAQAAERQGFGGVLLPTGRSCEDSWLVAASLIPVTQRLKFLVALRPGVISPTIAARQAATLDRLSNGRALFNLVTGGDPEELAAEGLFLSHEERYEASAEFTHIWRRLLEGETVDFAGKHIQVKDAKLLYPPVQQPRPPLYFGGSSEAAQNLAAEQVDLYLTWGEPPEQVKEKLAEVRAKAAAQGREVRFGIRLHVIVRETTEEAWQAAERLISHLDEKTIADAQAALARFDSVGQQRMAALHGGKKDNLEISPNLWAGIGLVRGGAGTALVGDGPTVAERIQEYADLGIDTFVLSGYPHLEEAYRVGELLFPHLDLAQQPTPLHAVNSAGEVVANRYVPRKVSQS
>CP026979.1|AYH30202.1|33238_34033_-|aliphatic-sulfonate-ABC-transporter-permease-SsuC
MARTLSSLAQRLAPFLLPVTLLVAWQISVEFGWLSNRILPAPSSVITAGWSLIYSGELWQHLAISGWRALIGFAIGGSIGLVLGFITGLSRWGERLLDSSVQMIRNVPHLALIPLVILWFGIDEAAKIFLVALGTLFPVYLNTYHGIKNIDRGLLEMARSYGLSGISLFYQVVLPGALPSIMVGIRFALGFMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSAQGLERIWLRWNPAYQTSSGDAS
>CP026979.1|AYH30201.1|32441_33242_-|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein
MTAFTDPVAPSHSPSPLTKGTPLALDAITKHYGHRTVLNEVQLRIPSGQFVAIVGRSGCGKSTLLRLLAGLEAASSGELLTGTAPLSSAKDDTRLMFQEARLLPWKKVIDNVGLGLRGNWREKAQDALASVGLADRANEWPAALSGGQKQRVALARALIHHPRLLLLDEPLGALDALTRIEMQSLIENLWLQHGFTVLLVTHDVSEAIALADRVILIEEGHVGLDITVDLPRPRRRGSAKLAELEARVLERVLAPTSSPLPQQAAI
>CP026979.1|AYH30200.1|32011_32269_-|DUF1471-domain-containing-protein
MKNVKFFAAAVVLSTLSFGAFAADQVSSQQAQSLEKVGVISATAHSLDSLQAQLAQKAEKAGASAFTITSATGDNQLRGTAVIYK
>CP026979.1|AYH30199.1|30614_31904_+|MFS-transporter
MDMTLTTRPTKRRYLTLLMIFITVVICYVDRANLAVASAHIQEEFGITKTQMGYIFSAFAWTYTLCQIPGGWFLDRVGSKVTYFIAIMGWSIATLLQGFATGLASLIGLRAVTGLFEAPAFPTNNRMVTSWFPEQERASAVGFYTSGQFVGLAFLTPLLIWLQEILSWHWVFIVTGGVGIVWALIWHFVYQPPKKSKGINQAELDYIAEGGGIVDGDAPSDKKTRTPLTAADWKLVFNRKLVGVYIGQFAVTSTLWFFLTWFPNYLTQEKHISALTAGFMTTVPFLAAFVGVLLSGFVADRLVRSGKSLGLARKTPIICGLLISTCIMGANYTNDPVWIMTLMAVAFFGNGFASITWSLVSSLAPIRLIGLTGGVFNFVGGLGGITVPLIIGYLAQDYGFAPALTYIAGVALVGALSYILLVGEVKRVG
>CP026979.1|AYH30198.1|28928_30077_+|galactonate-dehydratase
MKITKITTYRLPPRWMFLKIETDEGIVGWGEPVIEGRARTVEAAVHELSDYLIGQDPARINDIWQVLYRAGFYRGGPILMSAIAGIDQALWDIKGKALGVPVYQLLGGLVRDKIKAYSWVGGDRPSEVIAGIKKLTEIGFDTFKLNGCEEMGIIDNSRKVDAAVAVVAEIREAFGNSIEFGLDFHGRVDAPMAKILIKELEPYRPLFIEEPVLAEQAEYYPRLAAQTHLPIAAGERMFSRFDFKRVLADGGLAIIQPDLSHAGGITECFKIAAMAEAYDVALAPHCPLGPIALASCLHLDFVARNAVLQEQSMGIHYNKGAELLDYVINKEDFAMTDGHFYPLNKPGLGVEINEELVIERSKNAPDWRNPVWRYSDGAVAEW
>CP026979.1|AYH30208.1|39994_40252_-|DUF1471-domain-containing-protein
MKNVKTIAAAVVLATMTFGASAAEYVSPSQAQNLEKAGVVTATAQDLSSLQSKLAAKAEKAGAKAYTITSATGNDQLRGSAVIFN
>CP026979.1|AYH34362.1|40656_41775_+|biopolymer-transporter-Tol
MIYRATAGAHVGVVTCSPQEPLRYVFIHGPENPDSEWQYDFHHRRGTIVADRQRDEAITLDAFSITPPYQAGALRGGTHVHVFSPDASRLSFTYNDHVLNERDPALNLRNVGVAVPLQPVSVEKCHPREYDGSHYCVLISRTMPQPQPGSDEINRAYEEGWVGTMGYLRQDGTRQRWALAFIGDTRAVDGTTIPEVFIVDLPDALEDYAKEGDAPLAGTAISMPVPPAGVQQRRLTFTHQRRYPGLVNQPRHWLRSSPDGGEIAFLMRDEAGVAQLWAISPNGGEPRQVTHTEHGVQSAFNWHPDGRSLAFVCDNSIMLCDAKSGELVRMTARTDNAPSADAVVFSPDGKHIAYMREIDGFNQLFVVACWLS
>CP026979.1|AYH30209.1|41821_42214_-|YceK/YidQ-family-lipoprotein
MTLLKSALLSFMITGSGAVATSGCSSVMTHTGSDQGYYSGTLASVDMLRDDDTSWAMMPLVAIDLPFSAVTDTLLLPYDYYRAGSDKNKLSTRERISHSEEQNQTASSQLATMPNNNTMPNNNTMPHNQL
>CP026979.1|AYH30210.1|42603_43017_+|heat-shock-protein-IbpA
MRNPDFSPLYRSAIGFDRLFNLLETGQTQSNGGYPPYNVELVDENQYRIAIAVAGFAEQELDITAHDNLLIVKGAHAGEQVARNYLYQGIAERNFERKFQLAEHIQVKGANLENGLLYIDLERIVPEAMKPRRIEIK
>CP026979.1|AYH30211.1|43159_43612_+|heat-shock-chaperone-IbpB
MRNYDLSPLLRQWIGFDKLASSMQGSQEPIDFPPYNIEKKDDNHYRITLALAGFRQSDLDIEVEGPRLTVKGSPAPTEKAVEYLHQGLVFKPFTLSFTLAEHLHVSDAHFENGLLHIDLVRDVPEALQPQRIAIGGGRPALNQPSPEDAS
>CP026979.1|AYH30212.1|43725_44340_-|hypothetical-protein
MKKILLLIGILLGVGLTLSYQWVNPPFNNPYFFLSPKISTDTPINIPIKLYEKGDEIDFTFWKTPLPLSRFFLITPLESPSSHIVLKIKSTENLSVGFYTSDIFIGGGPIKDIEESPIFNVELYKINNDLTEKLILKKVHRQKYYIDKESQRLSRSPAEAFGLVDLSSEPYGQYRIKVKVLGDWPELKIDNLHYFITIETYFVK
>CP026979.1|AYH30213.1|44577_46236_+|putative-transporter
MSDIALTVSMLALVAVLGLWIGNWRIYGVGLGIGGVLFGGIIVGHVAHQYQIQLNDDMLHVVQEFGLILFVYTIGIQVGPGFFSSLRVSGLRLNAFALLTVFLGSVVTVMLHKLLNIPLPIILGIFSGAVTNTPSLGAGQQILTDLGSSTTLVNQMGTGYAMAYPLGICGILLVMWLMRVLFRVAVDNEAKQFEVSSGQHHEQLLTMNVSVTNTNLQGLAIQDVPILNRDTIVCSRLKRGDELMVPSPQTLIQLGDYLHLVGAKHDLEQARLVIGNEVETSLSTRGTDLHVERVVVTNEKVLGRKIRELNLKQNYDVVISRLNRAGVELVASNQASLQFGDILNLVGRKTAIDAVADIVGNAQQKLQQVQMLPVFIGIGLGVLLGSVPLMIPGFPVALRLGLAGGPLVVALVLGRIGSIGKLHWFMPPSANLALRELGIVLFLSVVGLKSGGDFVDTLLNGDGVWWIGYGALITIAPLLLVGILARTLGKMNYLTLCGMLAGSMTDPPALAFANGLHPTSGAAALSYATVYPLAMFLRIMSPQLLAVLFLSL
>CP026979.1|AYH30214.1|46761_48174_+|anion-permease
MSANNSRLIKLLVILCIAGGLWLLPVPDGVKPDAWHLMAIFIATVVGLILSPYPLGAMAMFSLTTVAILGLLSIKDVLAGFSDPTIWMIACAFFISRGFIKTGFGRRIGLLFISKLGNSSLGLAYGLVFTDLLFAPAMPSTSARCGGIITPLFRSIAEAYDSTPEKGTQRRIGAFLVQSIFQCNAVTSAMFMTSMAGNPMVAKLASQFGIHISWTDWALATLLPGFLSLALIPYLIYRFYPPELKKTSEMRAIAVERLREMGKMTRDEWVVLGVFLGLVTFWVLGSTLNIDATLTALAGLSVLLLSRALTWDDVVSEKEAWHTVVWFAVLMTLAGQLNKMGLIAWLGGLAGNAVSGMHWLPMLGLLLLVYYYSHYLMASAIAHISAMYAIFVSIALAAGAPPMLTVLVFGIFSNLFMSTTHYSSGPAPILFGTGYVPLGTWWKIGFLVSLVIIPIWLGVGSMWWKLLGFW
>CP026979.1|AYH30215.1|48367_49996_+|two-component-system-sensor-histidine-kinase-DcuS
MGKKKAPLKLGTSVFLMVSVVLGAVLLVVYSLLFFRINQLSEDHLREKAFAIARTFASSPVVIDELKGIGRPEEVQIAAETIRQRNQLLFVTVTDMDTVRHSHPEPERIGEYFAGRDIYPALLGMENTAINRGTLDPALRVFTPVFDNNHKQVGVVALGIALTSVQKVISDNRWMIPWTLLAGALVGWLGTLILVKILKRIMLGFEPFEISNLFEQRNAMLKHIKEGVIAVDQHGRITVINDEARRLFRQNHPQGSEKPVLKPTERVSEQWLEHLHLKQVLESGTPRRDEEINFNGHLLLTNTVPVFVKGDIIGAIATFRDKTEISQLLQRLSGMSYYADALRAQSHEFMNKLHVILGMLHLKYYSQLEDYILKTANNYQAEIGSIIRKVKSPVIAGFLLGKINRARDLGITLSISEESLLPDTDDVDATNELITVLGNLIENAMDAIDEQENCEISVSFHHQNSRLHCTVGDDGPGISLESQARIYEQGFSTKGSGRGIGLYLTKQSLEKIGGTIEFESEPDVYTQFFVTIPYQARLFDHD
>CP026979.1|AYH30216.1|49988_50711_+|two-component-system-response-regulator-DcuR
MINVLIVDDDAMVAELNKSYLNQVSGFSCYATVPTLQQARNLLMQPDSEIDLVLLDIYMQQDNGLDLLPTIREFSEKTDVIIISSASDVYTIKKALHYGVVDYLIKPFQFSRFEQALTAYREEANLFKHRDFVAQSDIDSLIRRTSGSTASERKKLPKGLTSLTLRTVCEWIEGNQGIEFSTEMLANAIGISRVSCRKYLIYLSDTNILTTNILYGSTGRPVYLYRLLPEKQDSLRQYCE

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Crispr_ID: CP026979_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026979_2

440705-441648

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

15 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP026979_2

>merge|CP026979|2|440705-441648|CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCGATTCAAGGGCAGATGCGCGGTCTATTGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCATTTCAGACCCGAATTTAAGAGCCGCTTGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGTATGCAATTAGCGACCCGTAAAACCCGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCTTCACATGGCACAAAACAAATCGGCGCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAAACGAAATGGAATACAAGGAAATGGGATGGTGTTCCCCGCGCCAGCGGGGATAAACCGGATGAGCAAATGGAAACGATCAACTATAACGGGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTACCAGATGAGGCGTATGAGTATGGGGATGTGTTCCCCGCGCCAGCGGGGATAAACCGACGTAAAGCCGCACAGGCACCTCGCCGGGAAGGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGTCGATTCAATGAAGGCGTATGGCGGAATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGATTGCGTCAGCGCCGTCAGAAAATGCCTTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGTGTACCGCACCGCTCTGGAGCAGTCTGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTATTTAGTGGAATTCGGCCTGACGCCAGCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAATGGCACCGGGGATAGATGTAATATCAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCACTCTGCGCCGCATTGGTGCTAATACAGATGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCCAACCCTTTCAGCAAGCTCTACCTGAGTAGTGTTCCCCGCGCCAGCGGGGATAAACCC

>CP026979|2|2|440705-441648|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGATTCAAGGGCAGATGCGCGGTCTATTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTTCAGACCCGAATTTAAGAGCCGCTTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGTATGCAATTAGCGACCCGTAAAACCCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTTCACATGGCACAAAACAAATCGGCGCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAACGAAATGGAATACAAGGAAATGGGATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATGAGCAAATGGAAACGATCAACTATAACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTACCAGATGAGGCGTATGAGTATGGGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTAAAGCCGCACAGGCACCTCGCCGGGAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTCGATTCAATGAAGGCGTATGGCGGAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTGCGTCAGCGCCGTCAGAAAATGCCTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGTGTACCGCACCGCTCTGGAGCAGTCTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATTTAGTGGAATTCGGCCTGACGCCAGCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAATGGCACCGGGGATAGATGTAATATCAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACTCTGCGCCGCATTGGTGCTAATACAGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCC

>CP026979|2|1|440705-441648|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGATTCAAGGGCAGATGCGCGGTCTATTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTTCAGACCCGAATTTAAGAGCCGCTTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGTATGCAATTAGCGACCCGTAAAACCCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTTCACATGGCACAAAACAAATCGGCGCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAACGAAATGGAATACAAGGAAATGGGATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATGAGCAAATGGAAACGATCAACTATAACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTACCAGATGAGGCGTATGAGTATGGGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTAAAGCCGCACAGGCACCTCGCCGGGAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTCGATTCAATGAAGGCGTATGGCGGAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTGCGTCAGCGCCGTCAGAAAATGCCTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGTGTACCGCACCGCTCTGGAGCAGTCTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATTTAGTGGAATTCGGCCTGACGCCAGCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAATGGCACCGGGGATAGATGTAATATCAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACTCTGCGCCGCATTGGTGCTAATACAGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCC

>CP026979|2|1|440827-441648|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGTATGCAATTAGCGACCCGTAAAACCCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTTCACATGGCACAAAACAAATCGGCGCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAACGAAATGGAATACAAGGAAATGGGATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATGAGCAAATGGAAACGATCAACTATAACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTACCAGATGAGGCGTATGAGTATGGGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTAAAGCCGCACAGGCACCTCGCCGGGAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTCGATTCAATGAAGGCGTATGGCGGAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTGCGTCAGCGCCGTCAGAAAATGCCTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGTGTACCGCACCGCTCTGGAGCAGTCTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATTTAGTGGAATTCGGCCTGACGCCAGCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAATGGCACCGGGGATAGATGTAATATCAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACTCTGCGCCGCATTGGTGCTAATACAGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCC

Protein	Signature genes	Signature genes Name	Protein_function
CP026979.1\|AYH30547.1\|442109_442370_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
CP026979.1\|AYH30545.1\|439408_440326_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP026979.1\|AYH30544.1\|438733_439381_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|215025
CP026979.1\|AYH30550.1\|444514_445867_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223154
CP026979.1\|AYH30538.1\|431471_434195_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP026979.1\|AYH30542.1\|436922_437990_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP026979.1\|AYH30543.1\|437999_438734_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP026979.1\|AYH30553.1\|448303_448957_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187560
CP026979.1\|AYH30549.1\|443975_444434_+\|hypothetical-protein	unknown	unknown	unknown
CP026979.1\|AYH30539.1\|434249_434465_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|226679
CP026979.1\|AYH30541.1\|436283_436919_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP026979.1\|AYH30537.1\|430892_431444_+\|polymer-forming-cytoskeletal-protein	unknown	unknown	gnl\|CDD\|377376
CP026979.1\|AYH30551.1\|447323_447770_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
CP026979.1\|AYH34382.1\|442521_442827_+\|type-II-toxin-antitoxin-system-HigB-family-toxin	unknown	unknown	gnl\|CDD\|378301
CP026979.1\|AYH30548.1\|442823_443240_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|227786
CP026979.1\|AYH30552.1\|447779_448277_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235127
CP026979.1\|AYH30546.1\|440326_440620_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP026979.1\|AYH34381.1\|441664_442036_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP026979.1\|AYH34383.1\|445897_447169_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
CP026979.1\|AYH30540.1\|434728_436300_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192

Protein	Function_ID	Function_description	E-value
CP026979.1\|AYH30547.1\|442109_442370_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	4.05062e-10
CP026979.1\|AYH30545.1\|439408_440326_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.85831e-155
CP026979.1\|AYH30544.1\|438733_439381_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.11153e-62
CP026979.1\|AYH30550.1\|444514_445867_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|223154	COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism].	5.03244e-53
CP026979.1\|AYH30538.1\|431471_434195_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.18954e-128
CP026979.1\|AYH30542.1\|436922_437990_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.61285e-117
CP026979.1\|AYH30543.1\|437999_438734_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.51659e-43
CP026979.1\|AYH30553.1\|448303_448957_+\|hypothetical-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.68285e-61
CP026979.1\|AYH30551.1\|447323_447770_+\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	4.40537e-34
CP026979.1\|AYH30539.1\|434249_434465_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|226679	COG4226, HicB, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	1.00724e-18
CP026979.1\|AYH30541.1\|436283_436919_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	5.84957e-21
CP026979.1\|AYH30537.1\|430892_431444_+\|polymer-forming-cytoskeletal-protein	gnl\|CDD\|377376	pfam04519, Bactofilin, Polymer-forming cytoskeletal. This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.	1.93745e-24
CP026979.1\|AYH34382.1\|442521_442827_+\|type-II-toxin-antitoxin-system-HigB-family-toxin	gnl\|CDD\|378301	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system. HigB_toxin is a family of RelE-like prokaryotic proteins that function as mRNA interferases. HigB cleaves translated mRNA only, and cleavage depended on translation of the target RNAs. HigB belongs to the RelE super-family of RNases. The toxin-antitoxin gene-pair is induced by environmental stress factors.	4.49918e-23
CP026979.1\|AYH30548.1\|442823_443240_+\|transcriptional-regulator	gnl\|CDD\|227786	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription].	1.24888e-31
CP026979.1\|AYH30552.1\|447779_448277_+\|hypothetical-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	1.11565e-96
CP026979.1\|AYH30546.1\|440326_440620_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.06855e-60
CP026979.1\|AYH34381.1\|441664_442036_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.30784e-06
CP026979.1\|AYH34383.1\|445897_447169_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.36316e-66
CP026979.1\|AYH30540.1\|434728_436300_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	3.31695e-131

>CP026979.1|AYH30546.1|440326_440620_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAVWLLEVRASVYVGDTSQRVREMVWQQIIELAEQGNVVMAWATNTESGFEFQTWGENRRMPVDLDGLRLVSFSPIENQ
>CP026979.1|AYH30545.1|439408_440326_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MYVPLNPIPLKDRVSLIFLQYGQIDVIDGAFVLVDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEAGVRLYASGQPGGARSDKLLYQAKLALDEELRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGARVRQTYTLLAQQYGVKWNGRRYDPKDWERGDKVNQCISAATSCLYGITEAAVLAAGYAPAIGFVHSGKPLSFVYDIADIIKFEGVVAKAFEIAARNPAEPDREVRLACRDIFRSQKTLSKLIPLIEEVLSAGGITPPLPPDDAQPPAIPEPKPFGDSGHRGQG
>CP026979.1|AYH30544.1|438733_439381_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYFSRITLNLNALPHAMATKRLHAGGYASHQWLWQLFPDQPQRSFLFREEEQETKSLFYLLSEQAPQVDHNLFRVETKPYQPQWRDGMTLAFSLRANPVVTRDGKRSDVLMDARHQAKAAGLSGVELWLHQQQRARDWLVRQGENAGFTLSSCCVDGYQRHRLNKPGQSAAIVFSSVDYDGMLHITDAERFAASVQQGLGKSKALGCGLLLLKRA
>CP026979.1|AYH30543.1|437999_438734_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MDNYLVFQIYAPLVSWGEAAVGEVRHTSTVPSRSALLGLLAAALGIRRDDRAALTAFNQHYSVAVRPLSDRETWLNDYHTVQMPKENRKVPRYTRRDELRPEAGQSLETMLTSREYRCDAYYHIAISVTPDAPYSLTALRDALLSPVFALYFGRKSCPPALPLAPHLFSGSLAEVWQQARQTPALNDLALQLIGRAEGLCYWEQESDTGLTPQYRVVRNDQPADRRRWQFTSRVQYVGSEKGEE
>CP026979.1|AYH30542.1|436922_437990_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHFLTAYPSSNLNRDDAGRPKTAMVGGVERLRVSSQSLKRAWRTSEVFEDALDGHIGTRSRRVGREVYNALIARGMVEKLADKAALSIAAQFGKPKKEEKDSKDPLEKYDIEQLAHISVQEKARIDRLIAQLATESREPNSEELKLLRKDAASVDIALFGRMLASSPEFNIEAACQVAHALGVSAVTIEDDFFTAVDDLNTAADSGSAHMGEQSFASALFYHYVCINRDLLLENLNNDEDLVARTLRALTETALTVSPGGKQNSFASRALATYALAEKGTDQPRTLSVAFFKPIRSADQVNDAIDLLCQQKAKFDRVYASGGRVPSYELNVEATNEGGSLQGLLDFISQ
>CP026979.1|AYH30541.1|436283_436919_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MANTADFLVITKDDAKKINDWFDGLQNRHGTPGNGRARRAELRRAKQPPYGVLTCQGYHDLAGKLAARLTQEHHIVALAMFVSVAAHAEKNMLKTSFAAQLGEKQGGDRPFLSPLRFERLQRAQTPEELHRQLFRAVQIRGEAGVNLPSLADGIFLWAEEWQARQENCAPNLHPLRRNAVRWACEYARASQNITPDEPDTTETSTTASDKE
>CP026979.1|AYH30540.1|434728_436300_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MYFSLIEEPWLPAVFADGRMSNISPLQLPDDNIIDLAWTRADFQGASYQLLIGLLQTAYAPADDDDWDAIWEDGLGTDFSQALAALAPAMQFGAQKPAFMQDCAPLDSDPTPISGLLIDAPGGNTLKLNKDHFIKRGTVNAICPHCAAMALFTLQTNAPSGGQGHRTGMRGGGPITTLLMQEDGRLPLWKKLWMNVLTQKVMPKGKPDATVFPWLAATPTSDGTHPPVTPENSHQLQAYWGMPRRIELDFTTLQTGECDLCGTESTALLTQYRTKNYGIQYDSWRHPLTPYRRALKGDDAPFLSVKGQPGGLAYRDWLGMMVSVEDKLNHTYPAAVVQHNAGKRALRNAGLWCFGYDMDNMKARCWYEHHVPLLFSPARFQSDALSLREYKDHLQLAVELARDSATLLRQMIKEAWFSRPKDAKGDFSAIDVAFWQETQPDFMRLCRSLSQGDTPATALNIWKKSLYRYLLNNYDTRVFSNPDEHRDLSKAAETRKKLSVFFGKQKAAETIKQMQEAVDGEHG
>CP026979.1|AYH30539.1|434249_434465_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MRFFDGHPAVIAFDSEIEMFRGEFIGLNGGADFYAYSVDELKKEGATSLAIFLLAVCPRWRGERKKDLISS
>CP026979.1|AYH30538.1|431471_434195_+|CRISPR-associated-helicase/endonuclease-Cas3
MDKEGIIDRRYFHYWGKANRSTDALVGDDYHLLPYHCLDVAACGYFLLKGNYFQASHVLRELASGDDDVAPWFAYFLAWHDIGKFARGFQRKYINPDSPLVQASGQVDTARHDALGFWLWQERDDFPDLLPFSADMLTSDSQKTLDIWLNIVTGHHGKPPEVVKKGSLAFHRDDYRAVQDYLHDVATCFPEVSVFPMCFAGKGWRNRLKQQSWGLAGLTVLADWLGSRQQDFWYCSTPMPLETYWREHALPIAEKVVSRLPRTPSPTSFHSIQRLFPFIQQPTPLQQKALEADISADGPQLFILEDVTGAGKTEAAMILAHRLMAQRKASGIYVGLPTMATANAMYKRLAQAYRALYSPEHNPSLMLAHGARHMSSAFMQSLWEGDSQGQAQYDKEENAASKDCNIWFADSRKKALLADIGVGTLDQALMAVMPFRHQSLRVLGLQNKLLILDEVHAYDAYMSKLIELLIGFHAQQGGSVIILTATLPLTLREKLTRAFAQGIACEAAPPDPNATYPWLTQLTREGLRETKLETRKEVQREVKIGWLTERLQGIDCVKAAVAAGQSIAWIRNTVDDAIAVYRQLIEAGVAEDNMLLFHSRFAFCDRMAIEERALAWFGKDSMPNERAGKVLIATQVVEQSLDIDVDNMISDLAPIDLLIQRAGRLQRHIRFLDGRRKTEADATPLTDERPAAVLHIMAPVWQPEAEADWLGDELRNSGYVYPDHAALWRTQAMLRECDAIKMPEAARLLINSVYEEQIAMPPALEAIANKVLGERYGQRSVASQSSLALVHGYCAQSSEAGWSDAVDISTRLGEETLDLYLAWKPENDGELPQPYATSDTFAWEQSRVQVRVSWWQKRKTGLPILEGEALERFRQQLHRPQAEVLLLNRGENHAFYSEQVGLMLLGS
>CP026979.1|AYH30537.1|430892_431444_+|polymer-forming-cytoskeletal-protein
MFSFDKNKKDVKEPQGRSEINNSPAISPSNELINSVNPVRVKKDTFISQGARMTGSLSVDGNITVEGQVEGDVQCDNTIKVEHTGQVNGEMKSQQIVINGRVEGRVVASVVAILAQGKVFGDIFTDELSIEKGGIFTGQSHPLTPPTQNQEKLTYVEKKKEKTSKAPAEQENVVALAGSTPTA
>CP026979.1|AYH34381.1|441664_442036_-|XRE-family-transcriptional-regulator
MSIQVIRDKSGKPEYAVVPYELYQKLIENADDPALYESIPYDHSAEDDVSIPHEVVSIHIDQDVSLQAAWRIFRGFSQQEVATALGMTQAAVSQLESPDSRTQKRTREKLAKLYHCEPEQLIL
>CP026979.1|AYH30547.1|442109_442370_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MLKVSWSKRALKQLGTIDTRYRKRIKEKVGELSTFPDVNLDLKKLESSGKQYRLRVGDYRIIFELINDVPQVCEILEIKRRTTTTY
>CP026979.1|AYH34382.1|442521_442827_+|type-II-toxin-antitoxin-system-HigB-family-toxin
MFSRAPFDTAIAQFPNQAAALADLYRTIKREIYATPDDMKKRFPSLDRMKYREKWWVIDIGGGHLRVMFFADFERGKIFIKHITSHAEYGSLTEYYRRNKE
>CP026979.1|AYH30548.1|442823_443240_+|transcriptional-regulator
MMYADAIKAANNLTSIVPLLGGSTSRKDYEDALKLTEYLLESEPDSPLIDMLTAKIDKYEEDAPEFVAFNERIKALPAGIALLRILMDQHGLTQSDFEAEIGKKSLVSRILNGERTLTVDHMSALAKRFDIPVSAFVD
>CP026979.1|AYH30549.1|443975_444434_+|hypothetical-protein
MKVEAAESSVFASQQVMAKRSTEHAEKVALSEQLQPYQAGSGAVPAGQTTRYDFTRISPAELYETVEGLVSSGQLGREEGSALLGFISSPRENIGSVPPSNVFQPINVFDTIQQGAAGASSRSEVQNTESLQRAAEALNRFQGQVSSISVYV
>CP026979.1|AYH30550.1|444514_445867_-|aspartate-aminotransferase-family-protein
MSELTLLADADERGRRYLVENAQRRVFPDAEALAALARFDETLPQQGFSAEDTLTLLDEVGSPATTASNGPNYFGFVIGAALPIAAASERLMIAWDQCASTFDNSPISATLERLASRWVLDALNLPKESAVGFGTSATACTLSCLAAARRALLAKQGWDFDNDGLIGAPEIKVVISELTHITVKKALRVLGFGLRHIIVTPVNAFGQIDVTQLPPLNERMILCLQAGEVNTGEFDDFAQIIPTAKAAGAWVHVDGAFGLWARASSHSALTEGIELADSWTTDAHKWLNTPYDCAMAICRSADVLAEAMNADAVYSSAARDAQKNLTLEFSRRPRGIPVWAVLRTLGRDGVAEMIERHCRQATLIAEGLRHAGFEILNRVVLNQVLLRGETDGQTTAIRETLQASGKAWFGGSVWQGRPALRISVSSWRTQDDNVQALITLLTEIKAQTQR
>CP026979.1|AYH34383.1|445897_447169_-|MFS-transporter
MKNSPIHTTSSVTEYDLYSKRLPAQTGLPRALVLLFACASALSVANVYYAQPLLDALSIDFHISIAAVGGVMTATQFGCALALILLVPLGDILNRRYLMLAQLSLLIVALIAVGLATTSLYLLIGMLAVGMFGTAMTQGLIAYAATAAAPQERGRVVGAAQGGVVIGLLLARVLSGFIADIAGWRSVYFFSALLMLLLAVFLWRALPHQPPAQQRPHYSALLLSMLILLRKERVLQIRGIIALLMFAALSIFWSALVLPLSREPYFFSHTVIGAFGLVGILGALAAVKAGSLADKGREQWLSGIALLLLLASWLPLWLAPYSLFALVVGIIALDLGGQAIHVTNQSMIFKTHPDAHSRLVGCYMLFYSIGSGLGAMTTTVAYDAAGWSGVCFLGAAVSLLALLFWKITRHISASPPAAFTPSR
>CP026979.1|AYH30551.1|447323_447770_+|transcriptional-regulator
MVKRKSLKEDVCPVARALDAVGDRWTLLIIRDAFDNRRRFSDFQRSLGVAKNILTDRLRTLVDEGILSVQPVSESSAYQEYVLTPKGEQLFPLVVALRQWGEQQLFAEGESHSLLLDKRTGQPLQAMLPHSAQGQRLVGQDTFVQKID
>CP026979.1|AYH30552.1|447779_448277_+|hypothetical-protein
MQTESRETDSDLEAITRYLKKSHVLTLCVGENSELWCASCFYTYDDQQIAFYLMTELHTRHGEIMARLPQVAGTVSGQPKSVMLIKGVQFRAQAVQLEGDDALQARARYNARFPIARASQAPIWRLDLIEVKMTDNMLGFGKKRYWQRDEQTGQKAHDKHEKMRE
>CP026979.1|AYH30553.1|448303_448957_+|hypothetical-protein
MSQVLLLGATGLVGHELLELLKVNNRVETIYAPTRKPLMLSDKVVNPYNTDLSAALAQLTEPVDIAFCCLGSTLKTAGSKQAFRYVDYTLVVEGSKVALALGATHLLVVSSLSANATSPFFYSRVKGETEKSLRQQGWQHLTLAQPSMLLGEREDSRTLESLAAPLFRLFPAKWRAIEGKTVAQALLNQAFSPEPKARVTVLESDQLRSLGQWQPLQ

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Crispr_ID: CP026979_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026979_3

443518-443851

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

5 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11

The CRISPR arrays of CP026979_3

>merge|CP026979|3|443518-443851|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCATGGATAAGAGCGACGTAGGAACGCAATTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTATCGTTTGCGAACGTGCATCCTTGCCCGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTACTACGCAGTGATGGGAATATTTCTGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGAAAGAGCGCGAGCTAAAAGAGTTGCGCACGTGTTCCCCGCGCCAGCGGGGATAAACCGTACCACGCGGGATTCATCTTTAATCCGACTGAGTGTTCCCCGCGCGGGGTCAAATCCCGCT

>CP026979|3|2|443518-443790|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATGGATAAGAGCGACGTAGGAACGCAATTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTATCGTTTGCGAACGTGCATCCTTGCCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTACTACGCAGTGATGGGAATATTTCTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGAAAGAGCGCGAGCTAAAAGAGTTGCGCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP026979|3|3|443518-443790|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATGGATAAGAGCGACGTAGGAACGCAATTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTATCGTTTGCGAACGTGCATCCTTGCCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTACTACGCAGTGATGGGAATATTTCTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGAAAGAGCGCGAGCTAAAAGAGTTGCGCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP026979|3|2|443518-443851|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATGGATAAGAGCGACGTAGGAACGCAATTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTATCGTTTGCGAACGTGCATCCTTGCCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTACTACGCAGTGATGGGAATATTTCTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGAAAGAGCGCGAGCTAAAAGAGTTGCGCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCACGCGGGATTCATCTTTAATCCGACTGA
GTGTTCCCCGCGCGGGGTCAAATCCCGCT

Protein	Signature genes	Signature genes Name	Protein_function
CP026979.1\|AYH30547.1\|442109_442370_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
CP026979.1\|AYH30545.1\|439408_440326_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP026979.1\|AYH30544.1\|438733_439381_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|215025
CP026979.1\|AYH30554.1\|448968_449433_-\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|236853
CP026979.1\|AYH30550.1\|444514_445867_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223154
CP026979.1\|AYH30542.1\|436922_437990_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP026979.1\|AYH30543.1\|437999_438734_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP026979.1\|AYH30553.1\|448303_448957_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187560
CP026979.1\|AYH30549.1\|443975_444434_+\|hypothetical-protein	unknown	unknown	unknown
CP026979.1\|AYH30546.1\|440326_440620_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP026979.1\|AYH30556.1\|452053_452440_-\|2-iminobutanoate/2-iminopropanoate-deaminase	unknown	unknown	gnl\|CDD\|105214
CP026979.1\|AYH30541.1\|436283_436919_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP026979.1\|AYH30548.1\|442823_443240_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|227786
CP026979.1\|AYH30551.1\|447323_447770_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
CP026979.1\|AYH34382.1\|442521_442827_+\|type-II-toxin-antitoxin-system-HigB-family-toxin	unknown	unknown	gnl\|CDD\|378301
CP026979.1\|AYH30552.1\|447779_448277_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235127
CP026979.1\|AYH30557.1\|452538_453003_-\|aspartate-carbamoyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|234859
CP026979.1\|AYH34381.1\|441664_442036_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP026979.1\|AYH30555.1\|449514_451653_-\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|236436
CP026979.1\|AYH34383.1\|445897_447169_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882

Protein	Function_ID	Function_description	E-value
CP026979.1\|AYH30547.1\|442109_442370_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	4.05062e-10
CP026979.1\|AYH30545.1\|439408_440326_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.85831e-155
CP026979.1\|AYH30544.1\|438733_439381_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.11153e-62
CP026979.1\|AYH30554.1\|448968_449433_-\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|236853	PRK11121, nrdG, anaerobic ribonucleoside-triphosphate reductase-activating protein.	2.24728e-119
CP026979.1\|AYH30550.1\|444514_445867_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|223154	COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism].	5.03244e-53
CP026979.1\|AYH30542.1\|436922_437990_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.61285e-117
CP026979.1\|AYH30543.1\|437999_438734_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.51659e-43
CP026979.1\|AYH30553.1\|448303_448957_+\|hypothetical-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.68285e-61
CP026979.1\|AYH30551.1\|447323_447770_+\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	4.40537e-34
CP026979.1\|AYH30546.1\|440326_440620_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.06855e-60
CP026979.1\|AYH30556.1\|452053_452440_-\|2-iminobutanoate/2-iminopropanoate-deaminase	gnl\|CDD\|105214	PRK11401, PRK11401, enamine/imine deaminase.	9.09297e-63
CP026979.1\|AYH30541.1\|436283_436919_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	5.84957e-21
CP026979.1\|AYH30548.1\|442823_443240_+\|transcriptional-regulator	gnl\|CDD\|227786	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription].	1.24888e-31
CP026979.1\|AYH30557.1\|452538_453003_-\|aspartate-carbamoyltransferase-regulatory-subunit	gnl\|CDD\|234859	PRK00893, PRK00893, aspartate carbamoyltransferase regulatory subunit; Reviewed.	7.05383e-84
CP026979.1\|AYH34382.1\|442521_442827_+\|type-II-toxin-antitoxin-system-HigB-family-toxin	gnl\|CDD\|378301	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system. HigB_toxin is a family of RelE-like prokaryotic proteins that function as mRNA interferases. HigB cleaves translated mRNA only, and cleavage depended on translation of the target RNAs. HigB belongs to the RelE super-family of RNases. The toxin-antitoxin gene-pair is induced by environmental stress factors.	4.49918e-23
CP026979.1\|AYH30552.1\|447779_448277_+\|hypothetical-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	1.11565e-96
CP026979.1\|AYH34381.1\|441664_442036_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.30784e-06
CP026979.1\|AYH30555.1\|449514_451653_-\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|236436	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
CP026979.1\|AYH34383.1\|445897_447169_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.36316e-66

>CP026979.1|AYH30548.1|442823_443240_+|transcriptional-regulator
MMYADAIKAANNLTSIVPLLGGSTSRKDYEDALKLTEYLLESEPDSPLIDMLTAKIDKYEEDAPEFVAFNERIKALPAGIALLRILMDQHGLTQSDFEAEIGKKSLVSRILNGERTLTVDHMSALAKRFDIPVSAFVD
>CP026979.1|AYH34382.1|442521_442827_+|type-II-toxin-antitoxin-system-HigB-family-toxin
MFSRAPFDTAIAQFPNQAAALADLYRTIKREIYATPDDMKKRFPSLDRMKYREKWWVIDIGGGHLRVMFFADFERGKIFIKHITSHAEYGSLTEYYRRNKE
>CP026979.1|AYH30547.1|442109_442370_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MLKVSWSKRALKQLGTIDTRYRKRIKEKVGELSTFPDVNLDLKKLESSGKQYRLRVGDYRIIFELINDVPQVCEILEIKRRTTTTY
>CP026979.1|AYH34381.1|441664_442036_-|XRE-family-transcriptional-regulator
MSIQVIRDKSGKPEYAVVPYELYQKLIENADDPALYESIPYDHSAEDDVSIPHEVVSIHIDQDVSLQAAWRIFRGFSQQEVATALGMTQAAVSQLESPDSRTQKRTREKLAKLYHCEPEQLIL
>CP026979.1|AYH30546.1|440326_440620_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAVWLLEVRASVYVGDTSQRVREMVWQQIIELAEQGNVVMAWATNTESGFEFQTWGENRRMPVDLDGLRLVSFSPIENQ
>CP026979.1|AYH30545.1|439408_440326_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MYVPLNPIPLKDRVSLIFLQYGQIDVIDGAFVLVDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEAGVRLYASGQPGGARSDKLLYQAKLALDEELRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGARVRQTYTLLAQQYGVKWNGRRYDPKDWERGDKVNQCISAATSCLYGITEAAVLAAGYAPAIGFVHSGKPLSFVYDIADIIKFEGVVAKAFEIAARNPAEPDREVRLACRDIFRSQKTLSKLIPLIEEVLSAGGITPPLPPDDAQPPAIPEPKPFGDSGHRGQG
>CP026979.1|AYH30544.1|438733_439381_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYFSRITLNLNALPHAMATKRLHAGGYASHQWLWQLFPDQPQRSFLFREEEQETKSLFYLLSEQAPQVDHNLFRVETKPYQPQWRDGMTLAFSLRANPVVTRDGKRSDVLMDARHQAKAAGLSGVELWLHQQQRARDWLVRQGENAGFTLSSCCVDGYQRHRLNKPGQSAAIVFSSVDYDGMLHITDAERFAASVQQGLGKSKALGCGLLLLKRA
>CP026979.1|AYH30543.1|437999_438734_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MDNYLVFQIYAPLVSWGEAAVGEVRHTSTVPSRSALLGLLAAALGIRRDDRAALTAFNQHYSVAVRPLSDRETWLNDYHTVQMPKENRKVPRYTRRDELRPEAGQSLETMLTSREYRCDAYYHIAISVTPDAPYSLTALRDALLSPVFALYFGRKSCPPALPLAPHLFSGSLAEVWQQARQTPALNDLALQLIGRAEGLCYWEQESDTGLTPQYRVVRNDQPADRRRWQFTSRVQYVGSEKGEE
>CP026979.1|AYH30542.1|436922_437990_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHFLTAYPSSNLNRDDAGRPKTAMVGGVERLRVSSQSLKRAWRTSEVFEDALDGHIGTRSRRVGREVYNALIARGMVEKLADKAALSIAAQFGKPKKEEKDSKDPLEKYDIEQLAHISVQEKARIDRLIAQLATESREPNSEELKLLRKDAASVDIALFGRMLASSPEFNIEAACQVAHALGVSAVTIEDDFFTAVDDLNTAADSGSAHMGEQSFASALFYHYVCINRDLLLENLNNDEDLVARTLRALTETALTVSPGGKQNSFASRALATYALAEKGTDQPRTLSVAFFKPIRSADQVNDAIDLLCQQKAKFDRVYASGGRVPSYELNVEATNEGGSLQGLLDFISQ
>CP026979.1|AYH30541.1|436283_436919_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MANTADFLVITKDDAKKINDWFDGLQNRHGTPGNGRARRAELRRAKQPPYGVLTCQGYHDLAGKLAARLTQEHHIVALAMFVSVAAHAEKNMLKTSFAAQLGEKQGGDRPFLSPLRFERLQRAQTPEELHRQLFRAVQIRGEAGVNLPSLADGIFLWAEEWQARQENCAPNLHPLRRNAVRWACEYARASQNITPDEPDTTETSTTASDKE
>CP026979.1|AYH30549.1|443975_444434_+|hypothetical-protein
MKVEAAESSVFASQQVMAKRSTEHAEKVALSEQLQPYQAGSGAVPAGQTTRYDFTRISPAELYETVEGLVSSGQLGREEGSALLGFISSPRENIGSVPPSNVFQPINVFDTIQQGAAGASSRSEVQNTESLQRAAEALNRFQGQVSSISVYV
>CP026979.1|AYH30550.1|444514_445867_-|aspartate-aminotransferase-family-protein
MSELTLLADADERGRRYLVENAQRRVFPDAEALAALARFDETLPQQGFSAEDTLTLLDEVGSPATTASNGPNYFGFVIGAALPIAAASERLMIAWDQCASTFDNSPISATLERLASRWVLDALNLPKESAVGFGTSATACTLSCLAAARRALLAKQGWDFDNDGLIGAPEIKVVISELTHITVKKALRVLGFGLRHIIVTPVNAFGQIDVTQLPPLNERMILCLQAGEVNTGEFDDFAQIIPTAKAAGAWVHVDGAFGLWARASSHSALTEGIELADSWTTDAHKWLNTPYDCAMAICRSADVLAEAMNADAVYSSAARDAQKNLTLEFSRRPRGIPVWAVLRTLGRDGVAEMIERHCRQATLIAEGLRHAGFEILNRVVLNQVLLRGETDGQTTAIRETLQASGKAWFGGSVWQGRPALRISVSSWRTQDDNVQALITLLTEIKAQTQR
>CP026979.1|AYH34383.1|445897_447169_-|MFS-transporter
MKNSPIHTTSSVTEYDLYSKRLPAQTGLPRALVLLFACASALSVANVYYAQPLLDALSIDFHISIAAVGGVMTATQFGCALALILLVPLGDILNRRYLMLAQLSLLIVALIAVGLATTSLYLLIGMLAVGMFGTAMTQGLIAYAATAAAPQERGRVVGAAQGGVVIGLLLARVLSGFIADIAGWRSVYFFSALLMLLLAVFLWRALPHQPPAQQRPHYSALLLSMLILLRKERVLQIRGIIALLMFAALSIFWSALVLPLSREPYFFSHTVIGAFGLVGILGALAAVKAGSLADKGREQWLSGIALLLLLASWLPLWLAPYSLFALVVGIIALDLGGQAIHVTNQSMIFKTHPDAHSRLVGCYMLFYSIGSGLGAMTTTVAYDAAGWSGVCFLGAAVSLLALLFWKITRHISASPPAAFTPSR
>CP026979.1|AYH30551.1|447323_447770_+|transcriptional-regulator
MVKRKSLKEDVCPVARALDAVGDRWTLLIIRDAFDNRRRFSDFQRSLGVAKNILTDRLRTLVDEGILSVQPVSESSAYQEYVLTPKGEQLFPLVVALRQWGEQQLFAEGESHSLLLDKRTGQPLQAMLPHSAQGQRLVGQDTFVQKID
>CP026979.1|AYH30552.1|447779_448277_+|hypothetical-protein
MQTESRETDSDLEAITRYLKKSHVLTLCVGENSELWCASCFYTYDDQQIAFYLMTELHTRHGEIMARLPQVAGTVSGQPKSVMLIKGVQFRAQAVQLEGDDALQARARYNARFPIARASQAPIWRLDLIEVKMTDNMLGFGKKRYWQRDEQTGQKAHDKHEKMRE
>CP026979.1|AYH30553.1|448303_448957_+|hypothetical-protein
MSQVLLLGATGLVGHELLELLKVNNRVETIYAPTRKPLMLSDKVVNPYNTDLSAALAQLTEPVDIAFCCLGSTLKTAGSKQAFRYVDYTLVVEGSKVALALGATHLLVVSSLSANATSPFFYSRVKGETEKSLRQQGWQHLTLAQPSMLLGEREDSRTLESLAAPLFRLFPAKWRAIEGKTVAQALLNQAFSPEPKARVTVLESDQLRSLGQWQPLQ
>CP026979.1|AYH30554.1|448968_449433_-|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MNYHQYYPVDVVNGPGTRCTLFVAGCVHECVGCYNKSTWRLNSGQPFTQEQEDQIIADLQDTAVPRQGISLSGGDPLHPQNVPDILRLVERIRAECPGKDIWVWTGYVLADITPEQQQVVDLINVLVDGKFVQDLKDPALIWRGSSNQVVHRLR
>CP026979.1|AYH30555.1|449514_451653_-|anaerobic-ribonucleoside-triphosphate-reductase
MKPVVIKRDGCQVPFDEVRIKEAVERAARAADVNDADYCATVACAVAKQMQDKSRVDIRDIQDAVENLLMSGNYKQLARTYIEYRHDRDIARERHGRLNQEIRGLVEQSNMALLNENANKDSKVIPTQRDLLAGIVAKHYAKQYILPRDVVLAHERGEIHYHDLDYSPFFPMFNCMLIDLNGMLTNGFKMGNAEIEPPKSISTATAVTAQIIAQVASHIYGGTTINRIDEILAPFVTASHAKHKAVAEEWKIPDAENYARTRTEKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTCWESRLIQESILRNRIAGLGKNHKTAVFPKLVFAIRDGLNHKAGDANYDIKQLALECASKRMYPDILNYDQVVKVTGSFKTPMGCRSFLGVYEEDGQQIHDGRNNLGVISLNLPRIALEAEGNEDRFWTLLDQRLTLAKKALMTRIARLESVKARVAPILYMEGACGVRLNADDSIADIFKNGRASISLGYIGLHETINALFGSQTHVFDDEALRAKAVAVIARLKAATEQWKDETGYGFSLYSTPSENLCDRFCRLDTAEFGVVQGVTDKGYYTNSFHLDVEKKVNPYQKIDFELPYPPMANGGFICYGEYPNLQHNLKALEDVWDYSYTRVPYYGTNTPIDECYECGFTGEFECTSKGFTCPKCGNHDSARVSVTRRVCGYLGSPDARPFNAGKQEEVKRRIKHLGNGQLG
>CP026979.1|AYH30556.1|452053_452440_-|2-iminobutanoate/2-iminopropanoate-deaminase
MSRIISTEHAPAAIGPYVQGVDLGSMIFTSGQIPVNPKSGLVADNITAQTRQSLENVQAIVEAAGLKVSDIVKMTVFVKDLHDFTLVNTAYEAFFKEHDAPFPARSCVEVARLPKDVKIEIEAIAVRR
>CP026979.1|AYH30557.1|452538_453003_-|aspartate-carbamoyltransferase-regulatory-subunit
MTHDNKLQVEAIKRGTVIDHIPAQVGFKLLTLFKLTATDQRITIGLNLPSNHLGRKDLIKIENIFLTEQQANQLAIYAPQATVNQIDEYDVVRKLVPTLPDHITGVLTCPNSNCISRSEPVSSSFSVKQRDGDVHLKCKYCEKEFERQAVLQDR

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Crispr_ID: CP026979_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026979_4

903530-903644

Orphan

Consensus_repeat	Method
AAAAAATCGCAGGAGCGATTTTCAACAACGCAAAGCGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026979_4

>merge|CP026979|4|903530-903644|CRISPRCasFinder
AAAAAATCGCAGGAGCGATTTTCAACAACGCAAAGCGTTGGCCCGAAGGGGCGTGGGCAGGGATAGCCCACGATAAAAAATCGCAGGAGCGATTTTCAACAACGCGAAGCGTTGG

>CP026979|4|4|903530-903644|CRISPRCasFinder
AAAAAATCGCAGGAGCGATTTTCAACAACGCAAAGCGTTGG	CCCGAAGGGGCGTGGGCAGGGATAGCCCACGAT
AAAAAATCGCAGGAGCGATTTTCAACAACGCGAAGCGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP026979.1\|AYH30915.1\|903692_905351_-\|cation/acetate-symporter-ActP	unknown	unknown	gnl\|CDD\|236495
CP026979.1\|AYH30905.1\|881537_882122_+\|hypothetical-protein	unknown	unknown	unknown
CP026979.1\|AYH30913.1\|900769_902452_+\|rhamnogalacturonate-lyase	unknown	unknown	gnl\|CDD\|199907
CP026979.1\|AYH30920.1\|911704_912442_-\|oxo-acid-lyase	unknown	unknown	gnl\|CDD\|188342
CP026979.1\|AYH30923.1\|914716_915358_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132618
CP026979.1\|AYH30919.1\|909757_911668_-\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226234
CP026979.1\|AYH30912.1\|898278_900408_+\|hemolysin-D	unknown	unknown	gnl\|CDD\|379183
CP026979.1\|AYH30907.1\|882862_884482_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227296
CP026979.1\|AYH30924.1\|915367_916144_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274659
CP026979.1\|AYH30908.1\|884540_894233_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378416
CP026979.1\|AYH30906.1\|882114_882753_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227296
CP026979.1\|AYH30922.1\|913540_914674_-\|amidohydrolase/deacetylase-family-metallohydrolase	unknown	unknown	gnl\|CDD\|236423
CP026979.1\|AYH30910.1\|896165_896924_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
CP026979.1\|AYH30917.1\|905783_907745_-\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
CP026979.1\|AYH30918.1\|908645_909038_+\|transcriptional-regulator	unknown	unknown	unknown
CP026979.1\|AYH30911.1\|896920_898276_+\|multidrug-transporter	unknown	unknown	gnl\|CDD\|273776
CP026979.1\|AYH30914.1\|902506_903439_-\|transposase	unknown	unknown	gnl\|CDD\|182167
CP026979.1\|AYH30916.1\|905347_905659_-\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
CP026979.1\|AYH30909.1\|894363_896166_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
CP026979.1\|AYH30921.1\|912438_913557_-\|DgaE-family-pyridoxal-phosphate-dependent-ammonia-lyase	unknown	unknown	gnl\|CDD\|273623

Protein	Function_ID	Function_description	E-value
CP026979.1\|AYH30915.1\|903692_905351_-\|cation/acetate-symporter-ActP	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
CP026979.1\|AYH30913.1\|900769_902452_+\|rhamnogalacturonate-lyase	gnl\|CDD\|199907	cd10320, RGL4_N, N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11.	3.48964e-85
CP026979.1\|AYH30920.1\|911704_912442_-\|oxo-acid-lyase	gnl\|CDD\|188342	TIGR03581, EF_0839, conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	2.71489e-147
CP026979.1\|AYH30923.1\|914716_915358_-\|hypothetical-protein	gnl\|CDD\|132618	TIGR03579, EF_0833, conserved hypothetical protein EF_0833/AHA_3914. Members of this family of relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.	5.74114e-103
CP026979.1\|AYH30919.1\|909757_911668_-\|PRD-domain-containing-protein	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	8.72895e-77
CP026979.1\|AYH30912.1\|898278_900408_+\|hemolysin-D	gnl\|CDD\|379183	pfam13437, HlyD_3, HlyD family secretion protein. This is a family of largely bacterial haemolysin translocator HlyD proteins.	8.444e-19
CP026979.1\|AYH30909.1\|894363_896166_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	6.08077e-12
CP026979.1\|AYH30907.1\|882862_884482_+\|pilus-assembly-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	1.82166e-07
CP026979.1\|AYH30924.1\|915367_916144_-\|hypothetical-protein	gnl\|CDD\|274659	TIGR03580, EF_0832, conserved hypothetical protein EF_0832/AHA_3913. Members of this family of relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Unknown function, General].	2.77438e-155
CP026979.1\|AYH30916.1\|905347_905659_-\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	3.89538e-44
CP026979.1\|AYH30906.1\|882114_882753_+\|hypothetical-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	0.00433602
CP026979.1\|AYH30922.1\|913540_914674_-\|amidohydrolase/deacetylase-family-metallohydrolase	gnl\|CDD\|236423	PRK09237, PRK09237, amidohydrolase/deacetylase family metallohydrolase.	0
CP026979.1\|AYH30910.1\|896165_896924_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.7858e-28
CP026979.1\|AYH30917.1\|905783_907745_-\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
CP026979.1\|AYH30911.1\|896920_898276_+\|multidrug-transporter	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	9.10194e-18
CP026979.1\|AYH30914.1\|902506_903439_-\|transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	1.00331e-96
CP026979.1\|AYH30908.1\|884540_894233_+\|hypothetical-protein	gnl\|CDD\|378416	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller. This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyze 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.	2.06073e-24
CP026979.1\|AYH30921.1\|912438_913557_-\|DgaE-family-pyridoxal-phosphate-dependent-ammonia-lyase	gnl\|CDD\|273623	TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. [Unknown function, Enzymes of unknown specificity].	0

>CP026979.1|AYH30914.1|902506_903439_-|transposase
MQPHDAIFKQFLSDIDIARDFLAAHLPPAIQQQCDFSTLQLESASFIENTLRSRLSDMLYSLQTRSGSGYIYCVIEHQSRPDKLMPFRLLRYCLDAMQQHLSQGHQSLPVVIPLLFYHGKRSPYPYSLQWLDHFTDPTLAAQVYHHAFPLIDLTVIPDEEIKTHRRAALLELVQKHIRTRDMLELAHDIGLLFEHWNLSLPLRHALLLYVAKVGNTSDIDRFIDSVAEPLSTHKEDTMTIAQQLHQRGFEQGMQAGLQEGLQEGIQEGMKTSALNIARQLLQSEMEQELVQRVTQLSDEEMAQLLRSEQK
>CP026979.1|AYH30913.1|900769_902452_+|rhamnogalacturonate-lyase
MLAPYGYSAQDNAVSLSVSGLNTVLDNGLLKVTFGEDGSAVSMVTGGKNIVTNLSGAARDPSKTRSAYLDYYVKGVKDFVPERVEVLRNDRDMAHVAYIDDRGGLLKLEYHLIMRRGVSGLYSYVVAENSGSQDVNVSELRNVYRFDPARLDHLYSGVRQGKPLLYRELEASPKVQDETWRLPDGSIYSKYDFAGYMRAVPFWGVFGNGVGAWLIHGNREYFSGDALKQDLLVHQDAIILNYMTGSHFGTPDMKAPPGWKKFYGPWLLYINQGDTKQMLADAQRQALTETVSWPYQWVNDSRYAFERTQVSGRVASQQPVTVVLSSSLDEPFDMQTRGYSYQATTDSQGNFAIPHVRPGNYHLTVYANSGTQPGVLAEQTLSVSGDKKVLPVITLPKAEPIVWAIGQANRQASEFRFGNEARNTRWQHEVPANLTFDIGRSDYQHDWYYAQTKPGKWDIRFALKPEKKTYFLNVALAAASNSGMSEPSTPQLAVMVNGTTLETLTYENDKTIYRGALQSGRYHVARIPVSSRLLKNGNNTITLQLKGGSVMYDVVTLSEE
>CP026979.1|AYH30912.1|898278_900408_+|hemolysin-D
MAEGATPAAGLSPLRDELILHAGPANRDGSPSWTLEDPLRGLYFRIGWAEMAMLSRWSVGNAAQIVAEINQTSALTLDDSDVQYFNRFLQANSLTRVSGDDALAQFTRQIEQSRVSIWRKLLKNYLFFRIPLWHPDRFLAATLPWIEPFFSRTFLKLTLLVAALGLFLAGRQWETFKHTFLHFFTLEGAALAGLTLCVTKILHELGHAYTCKRFGARVATMGVAFLVMMPVLYTDTSGSWKLTRRRQRMAIGAAGMMTELALAAWATLAWSFLPDGMLRSAAFMLATTTWIMTLAINLSPLMRFDGYFLLSDGLQVPNLQNRGFAIGRWKMREWLFGLGDAPPEHFPRWLQRTLVGYAFAVWIYRFFLFTGIAILVYHMAFKLLGMLLFAIEIGYFVVMPVVNEVREWSKRRKDYRMNRNMTTTLAVSAVVLILLMIPWQRSVYAPALLRAEQQSSLYMPVPAMIQRIEVQVGQPVHAGQTLFTLSSDALAHERQQLERQIATLNWQSTFQVFNKEAAGDHQRVKQEHEAALQKLQVLQRQSEQLTVRAPIDGVVADMATPLEAGEWLGQGEWLAVVTKPTGGLVEAFVSEKDWQRLSTGAKGTFYLQDVSRSSLPLTIVEIASTATRDLNAAPELASVYGGDIATLSDAQRKLHPEQAVYRVLLSLPADYRIQPQVLRGTVVMDGEAQSLLIRGWKVVSAVLIRELSF
>CP026979.1|AYH30911.1|896920_898276_+|multidrug-transporter
MTERNTTAAQTEQDTRLVLLAELLQLQSRARARETLDELAFFIVNETHNLVKYRQALLWDCDKRRLQAASGLASLDHNAPFCAEFSRLCRQWREEGRQTQALSFRDLPTDDRQLWQEHLPEFLLWLPLRVAQGDAPLVLVLARDSAWLPAEIILLEKLADAYAHAWLSLCKVRRRQVKTSPKKRRLIVAALVALVLILLIPVRQSVLAPAEIVAHRPVMVRAPVAGVVDDILVRPNQTVSANQPLVRLDVRELENRLESARQAFATADAQYRQAQQQALFDANSKASLAVLQSRREQAQSDMDFLQRQQERMQLVSPRDGVAILDDASDWIGRSVAVGERIMMIADPHDVELEIQLPAADAIALENGADVRLFLNVAPNSAQEARLEQIGYRAAPTPDNVMAYRLRARFTQDDPQLRVGLKGTAKLYGKRTVLFVYLLRKPLASLRVWLGV
>CP026979.1|AYH30910.1|896165_896924_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MAVGMMRPLLLVSALSLPLWGQAATQGDIRVQLSAQRYTVLSSEIAGKVTDIAVKEGEHFKQGDTLLTFDCTVLREKLNYSNAAENAARKKLAIADRLDKLNSISLSDVDQARSSVSMAQAESGVNRAMLQRCAIKAPFSGRVTETKVKRWESVPEGKELLAIYDDSAFELEMIVPSRWLVWLKQGSAFQVTLDETGLSYPAEISRLSSVIDPVSQSVKVFGRITQSTAGLLPGMSGVAQIVPSEAAGSVSP
>CP026979.1|AYH30909.1|894363_896166_+|TolC-family-protein
MNQHIANVWDSQQHDSQQQNVQHEATPRTAGSRALRIAVTLACLGLAGCAVKPEPVTVEQQAAQALSDRVQMFANQEPVRGTITLDEAIARALKYNLQQRVALMEQAMEDDLLGVQNLDMLLPKLTARAGLQTRDNVAGSSSQSVTTGRQSLESSTSQDQTMRTADLTMSWNVLDFGISYFNAKVQANKSLAAEERRRRVVADITRQVRTAYWEAATAQRLQPEVTTALTQARQALEYARQTEQQRLLAPVEALRFQKNMLEMVRQLEIVDSDLVVAKSRLAALMNLPPSSKYDVVVPNESSLVAPKMAYSLDDLENFSMVKRPEVREESYLARNSVLETRKSLLRLLPGVSLFAGINGDSNSYLVNSQWASAGVQVSGNLLNVLSWSSVKRAGQANEDLAEVRRQALRMAVLTQVNVAWQEYQQSTQMFGRYQELARIQRGILNQTTLSVQHRAETQMEQVRVSTETILTTRARDRSFADVQNALGAVYQAAGLDVLPDNVNDVSLAALSSSIARTTGNLEKGGVAVPRLSLPTPAVPATTTASTKAVSTAPAASTAAPVTKPIVPAAVTPVANAGKPYRVVNTDMWDNLQSLQAGGSR
>CP026979.1|AYH30908.1|884540_894233_+|hypothetical-protein
MTFSRSKSGSALTRPPRQAWVLEPRMMFDAAAVATVADVITHVAATETAPGVDATPAKETVTITDSSNSFTPIDLFSDVSVSADNGGQELKDLVITVNRTGANQAIVIDGTEITLEAVNGAKTTAGDGQYGYTVAVSGATTTITVSIASSEAFQPTDVAKLIDGIAYKPLNNTVAGGDVVVTLKSLSDEGGTSADTADLNIHATITIDSKINVAPVVSVSDAPELAELIIVPGMKSPQDVRYSSNGERAYAIGSDGTLGVFTVGEHGKLTLSQTLSDISALKDVKDIALSADNRSLYAITGNNNIVALSLGDNGQVIQVEGSYTQTIPSQNGNITGLAISSDGTQVYVATQWNGLVVFTRDATKGGLTFLQRVSDSGIDRSGIVASSGNYVFTIGMGAKHTLSVFQRSETGTLVSVTTLETSGEGYGAVDYQLAISKDQQFIYVADPDNGEISVYQLRDGTEGRTLTRVDTKALENINAQYLNADGSQLYALSSEGTLQIYSVNTSTGTLNESGQITNIGDTHGMVLSPDGQSLLVAGEAIQRFSALRTYLYGRELPFADHVTLSDSNLDVLNGGAGNYNGATLTIGRETPSADDQFGLSAGNDLTLQGGKILQAGVEIGTFAQNQGTLSVTFTADVTKETANAVLKQITYRNIGSQSTTETVALTVTANDGELNSTVTSIALLLTANSAPALVSQGGSNLTLDTRGASVTLFKDTAVNTGEAGQALTKLSIGIGGLNNPHQEYLTVDGTVIDLSEDSAGTTVSGYQYSYTYNAVNGESSLVLSSAQGISSMVMMTLVDGMSYSAGKESTSASGLRTITLTELQDNGGIANGGNDTATLTVSSSINLALNEQPAIEVTYSPDAALFYNDGKLSDYNERVSAMSVSQDGKTLLVTGSEGNNNGGKTYLRVYARDAENGKLSLLQSFTQGEQDDPSTPAFEVNGLNTITTLAQSEDGTSVYVAGYAAGGSTSVYSLVQFSRDATTGQLSYVGIVATQGVDGVSGLDAAVSEIVISDDGTSLYTINGVTPMDGSTGKDAVAFFSRDTTSGALTFVGSLIGSDTLPLKSPSGIVLSSDGKSAYISNLGNNSITVLSRDAETGNLSYVATINKSTIAADVNSAEIPKDDRYLTALQDIAISPDNRFVYVSSNSQGTVSIFSRDSDTGALTYAGIMDSYNSESHVPAELRATSLREIAISQDGSALYVAAFGGKSLLVFARDADSGALTFRNGVDLSVNTVNHLAVSADGKNIYAGVSTFFAGLNVFTAMANAPYSQTADIAFAKGIMLSDQELDAADDYKGASITISRNGAASTNDHFAFQDGGGLTLSGSDIQYQGETIGTLNVNEGAVSIVFTESVTKAVANQVLHQITYRNDGDAAGASIPLKITLSDGSKDTSLLLTLVENKAPVVDNAGYVPPSAVAGQSYTTVLPENLFRDPENGTLTWQVTGLPDGLAFDPATRTISGMSALNGAGTFDVTVTVSDASGESVDHELTLTIAPNPAQVPTLGGESSSLKNDYAIDGYDPNSFGDVLVGVKDSQLSADGKTLYVVSSPDSGSAVLSVFIRNEEGKFTLSQTFFNYHSVYNNETEQNDKIVDNAGLAGASDVLLSADGQYLYVVGSEDNAVTFFRVGSDGQLTQAGVLDAAALGGRSLDVRSHIVSQGDYLFITASQPNGENDERSVLVFKREADGKLTSVSQADDLIGASRLVLDPTGRYLFVSGSGGTVGVTAFSISDQGVLAQASQLTGTGEYDINELALSPDGKTLYAINADGVQYTLNTITVGANGALSLTDTTSITDDGGDTGEALATGLVVSADGTALFVIGKNITVFSRAEDGSLTWKDTISGSWDSPIDLFFSDLRNVELSADGKQLYLIGGDKIHVLDIGTAGATYTEGNDATVLLPSGRLSDPQLDALNNGEGNYNRASITVGRQDGGLQEDIFGLKPGNGLTLDGDNIVKNGTAIATFTQVNGVLTVKFIGAATKADAQNVLRQITYLNSSKDPEQAGSSPTFTFSINDGDNNTASSDITVDLIGINNPAELNTTVLNPQIPGNGEFVKLFKDTNINTIESGQDIWQVVLTFDKSGPNEAINVEGNTIVLVPSNGAPRTANDMQYSVSVNSEGKATVILYASRGSSETATLIDSISYNYLGSDTSGERHITLMVKEHQYSGTAPETTLKQAITLTLVPAAEANTAPTITMPDTMPTYTERADPIVLAPDVTVSDTQMDKLNGGKGNYDGATLKVTLGDGKTALDKIGFNAGNGLTLSGDSLQKDGVTIGQVTNQDGVLTIRFNADSGTIPTTEDVQNTLRQITYASDSHVPAAQVAVTVTLSDRYLVSQDVALLIGITQINDVPAVNTDPVLSFGDLDRLQTLELSAFGLTGSTNSAVSADGSRVYIADRQGHIALFSRNADGTLTHMRTSAIASGVIQLQMTSDGANLYALQRNSSEGIIVTFTLDSEGNLTEQNSLKQIWDAAQITLSDDGKSLYLMDRETVIVYGRDTTTGTLTRIQALDNDMSRPPYLWAPTEVITQGDKVYVVTNPSNGSSLIVYQRNSETGQLTPLTHLHSGETDSTGKVVNLDYVQHLSVSADGQTIFIANSRTSSSTWEGETTVNNHPLKIDAFRLNAAGTLTHLGTISGTATVEDISLSADDKTLYVALSDGSLAYYSADTLERIDAQNNLANAQKIAVSPRGELIILANSLVVLHQTPLSAFYTNGGSAVAAVPTLTLSDAELDAADGGAGDYRGASVVFQRSESPSSNDRFELIAGNGFTVSGNVISKDGQPVATLSQADGRASVTFTASLSRDDATALVRQIGWRSTVVVNESSVALRVVLNDGEQDSTPYEATVTISDRVNQAPVGNSAAFAPPAAQVGTRWSYTLPDSLFTDPENDALTFTVDSTRLPGGVSFDSATRTLSGTPSTAGSFNLTITATDSAGNATALNVTLAINAASTPVDPGTPTDPDTTTATPVILVHQGVSLPADASEREREQPLGAIVADLSRSETQPSPTNTIIDAVRQGDADTARQSDAPWVLDPVMSQLMPTLEQVNFSSRANTAVRDGATVSPADSNLFLSVRGQATALESAFSSVQGALQPDASGALTFSLPQRMFSVREGNATLTLQLANGRPLPTWVQFDARSGVVSITDASAVQVNQIQLVLKAQAADGTSRTVPITLQTGQGEGATMATGRGAMQLPSHATDNRDVERVAPAGKTAFTEQLRQHQPEQDALLAALGELSSLRA
>CP026979.1|AYH30907.1|882862_884482_+|pilus-assembly-protein
MKKTLQNRSVKKDDTGITLFWRERLSAFIHQEKGAGTAFYALGAMALLVTAAFIVDTSTATGDATQIKRATDAAALAVGHQATINGEEYSQEDINTLAYEYVKSNLGMNKALSEKLVAGDVSVTEGRNSATRKTYTVTVAFATKPSLLSLGARAQEVYSTSEVINRPTEVALVMPVTGDMSAGDIRSLKSVSHSFVERLLGSADTKRDNLWLSLVPYSQSVNVYDAEDANRIRRWAAPGALNPPELRSLFASGVVSSLADRRFPDRRANLLCMYRGLGREENFFWDEPPVGQFRVYYRHDLPQNGSPGAPPISWRGPNPDFDDNDAVDTRWIVADKGCPNAALMPLTNEASKLNQRIDQFSARFNVNYAIGMSWAGAALSPNMRGSDGWGDTTLPLDFNLDGNGDGQKVIVMMANTIGDWFDTDSYNFNRNEFRGGTGNDLARTFAAQRFRDLCSSFRARNIKFYFVGIRPGDPEDFGRNLFDREATPGLLVCTEGEKRMSFIDGAGFGAEGVENQLIRRLDRIASQIETEGGYVRLVE
>CP026979.1|AYH30906.1|882114_882753_+|hypothetical-protein
MTERLLKRRRWLNISRFLSRLRGFWFSRRASTAVETALAFPIVLAIGSLCADIYTVGLERTRMEQRVGAIASILAMQQALDEQGLQGLLDTVLPKEGTGNYQLLISNVRQTGELYWQLSRGTAAALCAESETLPGEEYTPELPERDREEGSKNTSMMVVEICREGKDVGLLGGLSLGGMLHASSINRVAIGVVTLDETLRKEAGLEEDERNP
>CP026979.1|AYH30905.1|881537_882122_+|hypothetical-protein
MAWLHRRSPWRDAGIVQGMVRGIVPGIVPRHDRNWRSTCGVIATEVAFLVPVVLVGVMMLFELARIGLVIAVGSAALDKAVQTFRLDNLVSDSAEQMGTRLKARMVEAGYGYLKEDDLTVSVLHFDNLTQLGGLTNGNSSQDDPDSEPTTTLPVWSVTVQIKKAFITPLPEVLTLGDTFRYQYKHVFGTELRND
>CP026979.1|AYH30915.1|903692_905351_-|cation/acetate-symporter-ActP
MKIRFMMLFGLLTLPVLAWAAEALTGDVQRQPLNIQAIVMFLLFVGGTLYITYWASKKTRSRSDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLQQRPIRSLSACGSLVVVALYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVMYVMFGGMLATTWVQIIKAVLLLFGATFMAVMVMKSVGFSFDALFKQAMAVHPKGAAIMSPGGLVSDPISALSLGLGLMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFMGYFYFLTFIIGFGAILLVSGNPTFKDATGALIGGNNMAAVHLADAVGGNFFLGFISAVAFATILAVVAGLTLAGASAVSHDLYSNVIKKGKATERDELKVSKITVLVLGVVAISLGILFENQNIAFMVGLAFSIAASCNFPIIIISMYWSKLTTRGAMIGGWAGLLTAVILMVLGPTIWVKILGHATPIYPYDYPALFSMLVAFIGIWFFSITDRSETGQQERARFHAQFVRSQTGVGASKGSSH
>CP026979.1|AYH30916.1|905347_905659_-|DUF485-domain-containing-protein
MNDAIYQRIESNPLFRELVNKRQRFAAFLSLIMLVLYVGFILLIAFAPSWLGTPIAPGSSITRGIPIGVGLIAISFILTGVYVYRANGEFDRLTKQLLDEVKQ
>CP026979.1|AYH30917.1|905783_907745_-|acetate--CoA-ligase
MTQHNKHAIPAAIAENALINAQQYENMYRLSVDDPATFWGEQGKIVDWIKPYETIKNTSFDPGHIRIRWFEDGTLNVAANCLDRHLAERGDQTAIIWEGDDATESKKVTYRELHQSVCRFANVLKSQGVKKGDVVAIYMPMVPEAAVAMLACARIGAIHSVIFGGFSPEAISGRIIDSSAKLVITADEGVRAGRVIPLKKNIDEALKNPNVTTISSVIVFRRTGKSGEWKDGRDLWWHDLVEKADDHCPPEEMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGAITLMFEGVPTWPDASRMAQVVDKHKVNILYTAPTAIRALMAEGDKAIEGTSRESLRIMGSVGEPINPEAWEWYFNKIGNGKCPIVDTWWQTETGGFMITPIPGAIEAKAGSATRPFFGVQPALVDNLGNPQEGTSEGNLVIVDSWPGQARTLFGDHDRFEQTYFSTFKGMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHHMKGQAIYAYITLNHGEEPSSELYTEVRNWVRKEIGPIATPDILHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQAMSTASQ
>CP026979.1|AYH30918.1|908645_909038_+|transcriptional-regulator
MSLIFGRNEILGMLSQPVQNDRRAVAVIDEKCKVVCANSAFNAHFGLRAEMNTPVSIDDVLPINVKFAYHDFITNANVLSTRVVSDLLSDGFTKKQLSTLSFSKLNVENRVLSLLILNQDTVEPSTNLAS
>CP026979.1|AYH30919.1|909757_911668_-|PRD-domain-containing-protein
MRFPNQRLAQLFIMLQNETLPQDELAQRLSVSTRTVRADITALNALLEQHGAQFILTRGSGYQLKIDDETRYQTLQTTRSRALRIPRSGQERVQYLVVRFLTSAFSLKLEDLADEWFVSRATLQNDMAEVRERLSRYQLILETRPRHGMKLFGSEMSLRACLTDLLWELTQQSTKSPLLTEETLNLGVPEALAAILHDCFSQHHIRLTDEGDLFIRLYCAVAIRRISEGYPLSEFSAEDGDDNVRDAAKDISAALQQLAGKPLAAAEEHWLRVHIAGRRVQELVPSTISADDDETLVNYILGYINTHYNYNLQDDAQLHADLLTHIKTMITRVRYQIMLPNPLLDNIKQHYPMAWDMTLAAVSSWGKYTPYVISENEIGFLVLHIGVGLERHYNIGYQRQPHVLLVCDAGNAMVRMIEAVLVRKYPQIIVTRTVTLREYEQCGGIVEDFVISTARISEKDKPVVTIAPFPTDYQLEQIGKRVLVDRTRPWMLEKYFDAAHFRIIDGTIDQQTLFTTLCDQLRDEGFVDTAFLDSVVEREAIVSTLFGEGIALPHSLGLLAQKTVVYTVLAPQGIQWGEETAHVIFLLAISKREYEEAMAIYDIFVTFLRERATARLCACTDFAAFKTIAMECVSRF
>CP026979.1|AYH30920.1|911704_912442_-|oxo-acid-lyase
MKLTPNFYRDRVCLNVLAGSKENASEIYDAAEGHVLVGVLSKNYPDVASAVADMRDYAERINNALSIGLGAGDPSQSAMVSLIAREVQPQHVNQVFTGVATSRALLSQNDTVVNGLVSPTGTPGLVKISTGPLSSQTTDGIVPVDTAIALLKDMGGSSIKYFPMGGLKCRDEYQAVAEACARNGFWLEPTGGIDLDNYSEILQIALDAGVSKIIPHIYSSIIDKVSGNTRPSDVRQLLAMTKARV
>CP026979.1|AYH30921.1|912438_913557_-|DgaE-family-pyridoxal-phosphate-dependent-ammonia-lyase
MPSIYEKYQLKRVINASGRMTVLGVSTPRPDVVDAVLSGMNHYFEMKDLVNKTGEYIARLLEVEGATVVSCASAGIAQSVAAVLVRDSDWLLENLHSTVIDNNEIVLPRGHNVNFGAPVSTMVTLGGGKVVEAGYANECSADQLAAAISSRTAAILYIKSHHCVQKSMLSVEQAAAVAHKHNLPLIVDAAAEEDLQCYYRAGADLVIYSGAKAIEGPTSGLVIGKTQYVEWVKRQTAGIGRAMKVGKEGILGLTCAIEHYLSTSKESGAEMVAKMTPFLEHLNTLKGVSARVVWDSAGRDIARSEIKFDEATTGIATGELVSALKQGEYAIYFRGYKTNEGIIEADVRSVTADQLEIVYRRIAEELNKEHTA
>CP026979.1|AYH30922.1|913540_914674_-|amidohydrolase/deacetylase-family-metallohydrolase
MFDLLLRRARLADDTVTDIAIKSGKIAALGEIHGAALKTINLHAAHYVSAGWIDSHVHCYPHSPIYHDQPDSVGIATGVTTVIDAGSTGADDVDDFYTITRQAVTEVYALLNISRVGLIAQNELADMANIDAEAVRDAVKRHPHFIVGLKARMSSSVVGENGITPLERAKAIQKANGELPLMVHIGNNPPHLDEIADLLTTGDIITHCYNGKPNRILTPSGELRASVARAIARGVRLDVGHGSASFSFAVAQQAIALGILPQTISSDIYCRNRIDGPVRTLANVMSKFLAIGLSLPQVIACVTGNAAAALHLECKGQLIAGYDADLTIFDLRKQPIRFTDAENDSLQADQLLTPLAAIRMGKIYLTEQGSAEHAFDL
>CP026979.1|AYH30923.1|914716_915358_-|hypothetical-protein
MEQNKGFWYADWSFPIFVGLLSSGVFAGTHMYYLYGIGAFNEVAFVSMLRAGMDTGVYGAVAAFGASFLFARIIEGSLVGILDIGGAIQTGVGLGVPALLLGAGFVFPVVNFVASLATGLVIGLAIGYLIILARKFTINQSDSTYGADVMMGAGNASGRFLGPLIILSAMTASIPIGIGSLVGALLFYLWQKPITGGAILGAMLLGSLFPIAL
>CP026979.1|AYH30924.1|915367_916144_-|hypothetical-protein
MFLIILIKSLIIGGLVGVGVGAGAARMFHAPTTQGMGAFRTLGELNSCEGDPASHFSFGLGFFFNAWASSVAAGSFTQDVDHRIIPNWGAAALMVRNRNVGETLHDPKKMAIACGLIGMIVVTFLNLTASSVPAALQVTAVKVLVPAANLLVNIVMPVIFWLAAIDAGKKSGFWATVFGGSAQLIMGNAVPGLVLGILIGKGVEESGWNRVTKVMMTAIVALFVLSAFFRGFDLKVIASFNLSAPNWLELIHNSLSGK

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Crispr_ID: CP026979_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026979_5

1276642-1276758

Orphan

Consensus_repeat	Method
GCCATCCCTGGCCGCCACCCTGAGGGCCGTCGCAAGCGACGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026979_5

>merge|CP026979|5|1276642-1276758|CRISPRCasFinder
GCCATCCCTGGCCGCCACCCTGAGGGCCGTCGCAAGCGACGTTGAAAAACGTTCCCCACGTTTTTTTATGGCGTGCCATCCCTGGCCGCCACCCTGCGGGCCGTCGCAAGCGACGTT

>CP026979|5|5|1276642-1276758|CRISPRCasFinder
GCCATCCCTGGCCGCCACCCTGAGGGCCGTCGCAAGCGACGTT	GAAAAACGTTCCCCACGTTTTTTTATGGCGT
GCCATCCCTGGCCGCCACCCTGCGGGCCGTCGCAAGCGACGTT

Protein	Signature genes	Signature genes Name	Protein_function
CP026979.1\|AYH31219.1\|1286918_1287722_-\|inositol-1-monophosphatase	unknown	unknown	gnl\|CDD\|236753
CP026979.1\|AYH31206.1\|1270382_1271489_-\|pectinesterase-A	unknown	unknown	gnl\|CDD\|227022
CP026979.1\|AYH31211.1\|1278194_1278854_+\|DUF1007-domain-containing-protein	unknown	unknown	gnl\|CDD\|368801
CP026979.1\|AYH31200.1\|1259692_1261201_-\|membrane-bound-lytic-murein-transglycosylase-MltF	unknown	unknown	gnl\|CDD\|236778
CP026979.1\|AYH31202.1\|1266002_1267454_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP026979.1\|AYH31204.1\|1268290_1269628_+\|two-component-system-response-regulator-GlrR	unknown	unknown	gnl\|CDD\|185070
CP026979.1\|AYH31217.1\|1284518_1285601_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223682
CP026979.1\|AYH31210.1\|1277002_1278163_+\|3-phenylpropionate-MFS-transporter	unknown	unknown	gnl\|CDD\|236856
CP026979.1\|AYH31208.1\|1273761_1274952_-\|NO-inducible-flavohemoprotein	unknown	unknown	gnl\|CDD\|237337
CP026979.1\|AYH31212.1\|1278844_1279918_+\|nickel-transporter	unknown	unknown	gnl\|CDD\|225125
CP026979.1\|AYH31201.1\|1261417_1265305_+\|phosphoribosylformylglycinamidine-synthase	unknown	unknown	gnl\|CDD\|235394
CP026979.1\|AYH31209.1\|1275312_1276566_+\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
CP026979.1\|AYH31203.1\|1267457_1268294_+\|two-component-system-QseEF-associated-lipoprotein-QseG	unknown	unknown	gnl\|CDD\|236745
CP026979.1\|AYH31213.1\|1280037_1281165_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238559
CP026979.1\|AYH31205.1\|1269916_1270255_+\|nitrogen-regulatory-protein-P-II	unknown	unknown	gnl\|CDD\|182784
CP026979.1\|AYH31216.1\|1283721_1284522_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
CP026979.1\|AYH31215.1\|1283341_1283665_+\|hypothetical-protein	unknown	unknown	unknown
CP026979.1\|AYH31214.1\|1281586_1283254_+\|methyl-accepting-chemotaxis-protein-I	unknown	unknown	gnl\|CDD\|185001
CP026979.1\|AYH31207.1\|1271591_1273250_-\|pectin-acetylesterase	unknown	unknown	gnl\|CDD\|238859
CP026979.1\|AYH31218.1\|1285607_1286726_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238559

Protein	Function_ID	Function_description	E-value
CP026979.1\|AYH31219.1\|1286918_1287722_-\|inositol-1-monophosphatase	gnl\|CDD\|236753	PRK10757, PRK10757, inositol-1-monophosphatase.	0
CP026979.1\|AYH31206.1\|1270382_1271489_-\|pectinesterase-A	gnl\|CDD\|227022	COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism].	1.01573e-79
CP026979.1\|AYH31211.1\|1278194_1278854_+\|DUF1007-domain-containing-protein	gnl\|CDD\|368801	pfam06226, DUF1007, Protein of unknown function (DUF1007). Family of conserved bacterial proteins with unknown function.	2.18516e-89
CP026979.1\|AYH31200.1\|1259692_1261201_-\|membrane-bound-lytic-murein-transglycosylase-MltF	gnl\|CDD\|236778	PRK10859, PRK10859, membrane-bound lytic murein transglycosylase MltF.	0
CP026979.1\|AYH31202.1\|1266002_1267454_+\|sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.19662e-46
CP026979.1\|AYH31204.1\|1268290_1269628_+\|two-component-system-response-regulator-GlrR	gnl\|CDD\|185070	PRK15115, PRK15115, response regulator GlrR; Provisional.	0
CP026979.1\|AYH31217.1\|1284518_1285601_-\|iron-ABC-transporter-permease	gnl\|CDD\|223682	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism].	2.09771e-76
CP026979.1\|AYH31210.1\|1277002_1278163_+\|3-phenylpropionate-MFS-transporter	gnl\|CDD\|236856	PRK11128, PRK11128, 3-phenylpropionate MFS transporter.	0
CP026979.1\|AYH31208.1\|1273761_1274952_-\|NO-inducible-flavohemoprotein	gnl\|CDD\|237337	PRK13289, PRK13289, NO-inducible flavohemoprotein.	0
CP026979.1\|AYH31212.1\|1278844_1279918_+\|nickel-transporter	gnl\|CDD\|225125	COG2215, COG2215, ABC-type uncharacterized transport system, permease component [General function prediction only].	2.80265e-80
CP026979.1\|AYH31201.1\|1261417_1265305_+\|phosphoribosylformylglycinamidine-synthase	gnl\|CDD\|235394	PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase; Provisional.	0
CP026979.1\|AYH31209.1\|1275312_1276566_+\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
CP026979.1\|AYH31203.1\|1267457_1268294_+\|two-component-system-QseEF-associated-lipoprotein-QseG	gnl\|CDD\|236745	PRK10722, PRK10722, two-component system QseEF-associated lipoprotein QseG.	7.99272e-122
CP026979.1\|AYH31213.1\|1280037_1281165_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238559	cd01139, TroA_f, Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	4.2494e-154
CP026979.1\|AYH31205.1\|1269916_1270255_+\|nitrogen-regulatory-protein-P-II	gnl\|CDD\|182784	PRK10858, PRK10858, nitrogen regulatory protein P-II.	4.41835e-62
CP026979.1\|AYH31216.1\|1283721_1284522_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.94609e-88
CP026979.1\|AYH31214.1\|1281586_1283254_+\|methyl-accepting-chemotaxis-protein-I	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	5.59344e-87
CP026979.1\|AYH31207.1\|1271591_1273250_-\|pectin-acetylesterase	gnl\|CDD\|238859	cd01821, Rhamnogalacturan_acetylesterase_like, Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.	1.87026e-60
CP026979.1\|AYH31218.1\|1285607_1286726_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238559	cd01139, TroA_f, Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	6.25498e-102

>CP026979.1|AYH31209.1|1275312_1276566_+|serine-hydroxymethyltransferase
MLKREMNIADYDADLWQAMEQEVVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKALFGADYANVQPHSGSQANFAVYTALLQPGDTILGMNLAHGGHLTHGSPVNLSGKLYNVIPYGIDESGKIDYDEMAELARTHKPKMIVGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAADVYPNPVPHAHIVTTTTHKTLAGPRGGLILAKGGDEDLYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLSRGFNVVSGATSNHLFLLDLVSKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGTPAATRRGFKEAEVRELAGWICDVLDNINDEATIERVKQKVLDICARFPVYA
>CP026979.1|AYH31208.1|1273761_1274952_-|NO-inducible-flavohemoprotein
MLDNHTIAIVKSTIPLLAETGPKLTAHFYDRMFTHNPELKDIFNMSNQRNGDQREALFNAICAYATNIENLAALLPAVERIAQKHASFNIQADQYQIVGSHLLATLDEMFSPGQEVLDAWGKAYGVLANVFIQRENDIYRSTETKNGGWSGVRAFRIVNKQPQSSVITSFTLEPTDGQPIADFQPGQYLAVYIKHDSFANQEIRQYSLTHAPNGQSYRIAVKREAQGTVSGYLHDTAREGDIIHLAAPHGDFFLDIPATTPVALISGGVGQTPMLGMLHTLKQQSHQAKVLWLHAAENGATHAFADEIKQTGQSLPQFQNHIWYREPQQTDRPGEDYHHSGLMQLSSLQDELTTPAMHYYLCGPVVFMQFVAQQLLAIGIPAEQLHYECFGPHKVV
>CP026979.1|AYH31207.1|1271591_1273250_-|pectin-acetylesterase
MAKRFSESMALALILSAPFTCVHAKAPAAAHQTATPESAKLLSGSTLGEKTGLSGNVTVRDIHLPATIIIRDQQGQKRQTQTDEQGKYHLDVSGLTPPLRVLAIESGGNNCLLNNISRAICLSAVAPSLHDGKENIANINPLTDRITSDIAVAAGYIGPQQLTDDTASPKLDAAAWKTAYADFHAGFNGALKQAGISVPARFDPLTYPASQQEAVTKIVNVINHNRNYHNNTGYSGHTVLTDSAFHPIVGLNDKGDYEPLDYRSARQSLDAIQKAQTRIFLVGDSTAATYEKMRFPRMGWGQVFEQQFSKNSSVKVVNGTRAGRSSRDYFYEGWFRQMQPLMKEGDFLFIQMGHNDQNCNGAKEIRGPADVANLCTYPNDAAGKKQAPQGKADMSFQTSLERYITFARQHKLTPVLLTPTTRVKTAEGKNGTPAVHSHFTKQNADNGYAFVGDYSQTIKDTAANNKVVLLDIEPATIALANQGNSEHWKQYWLVIDPKKYPYYRDQAGSLSKPDTTHFQKKGAIAVAEIVANAIRQEPALASLAEKTVSKHK
>CP026979.1|AYH31206.1|1270382_1271489_-|pectinesterase-A
MINASHFGKTLTLAMLISSPWALAQAADYNALVSANATDAKAYKTITEAIASAPADSSPFVIYVKNGVYHERLTITRPNIHLQGESRDGTVIAATTAAGMLKPDGSKWGTYGSNTVKVDAPDFSARSLTISNDFDYPANQAKASDDPTKLKDSQAVALLVAENSDRAWFHDVSLTGYQDTLYVKGGRSFFSKCRISGTVDFIFGNGTALFDDCDIVARNRTDVKDQPLGYLTAPSTDIKQKYGLVIINSRVIKEKDVPAKSYGLGRPWHPTTTFEDGRYADPNAIGQTVILNTSMDDHIYGWDKMSGKDKQGEKIWFHPQDSRFFEYKSSGTGAEKNEQRRQLSEAEAAEYTTDKVLAGWVPTAPKGK
>CP026979.1|AYH31205.1|1269916_1270255_+|nitrogen-regulatory-protein-P-II
MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVDFLPKVKIEIVVSDDIVDTCVETITQTAQTGKIGDGKIFVFDVARVVRIRTGEEDEEAI
>CP026979.1|AYH31204.1|1268290_1269628_+|two-component-system-response-regulator-GlrR
MTARKTASLLLVDDDPSLLKLLGMRLTSEGFSVMTAESGQEALRLLTRETFDLVISDLRMDEMDGMALFSEIQRYQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDAMALSAPAGDESWRETIVTRSPIMLRLLEQARMVAQSDVSVLINGQSGTGKEVLAQAIHAASPRAKKAFIAINCGALPEPLLESELFGHAKGAFTGAVSSREGLFQAAEGGTLFLDEIGDMPLSLQVKLLRVLQERKVRPLGSNRDMDIDVRIISATHRDLPKAMEKNEFREDLYYRLNVVNMKLPALHERAEDIPLLANHLLRESANRHKPFVRTFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSAPVISDALVEQALEGENTALPTFVEARHQFELNYLRKLLQIAKGNVTQAARMAGRNRTEFYKLLGRHELDANDFKD
>CP026979.1|AYH31203.1|1267457_1268294_+|two-component-system-QseEF-associated-lipoprotein-QseG
MNVGFMKGWLANRQFSCLLKAAVLSSPLVLAACSSYVNSDSALLEIEGTPPKEQVADFRIAQCEHLWQIDDRESMNNALYWLRAMDCAGRLTQFQARDEAEQVAGDSWENAFKQGILLDNAGITQAERRQVLEQINLYRLAFPAALRPLMQTWRDRQTLFLALSDERLRYKRLQESSDKQLDALRVQQNHLQYQLETTTQKLENLTDIERQLSSRKQLSGEMPDNDADHRGSAGANKDGSRNSATKPRNEPVDADDTYTPPMESHTDKSTTKKEPARQ
>CP026979.1|AYH31202.1|1266002_1267454_+|sensor-histidine-kinase
MISLKRWRLFPRSLRQLVIMAFLLVLLPLLVLAYQAYQSLNMLSEQAADINRTTLADARRSEAMTSVALAMERSYRQYCVLDDQTLATLYQNQRKQYSQMLDSHARVLPDPRYYQTLRQLLTQLGEIRCHNSGPEQTASSLLEGFSRANGQMVQVTRDVVFSRGQQLQQAISERGQFFGWQALLLFLVSVLLVVLFTRMIIGPVNGVERMINRLGEGRSLGNTSTFKGPREIRTLAQRIIWLSERLSWLESQRHEFLRHISHELKTPLASLREGTELLADEVVGPLTADQKEVVEILDSSSRHLLQLIDQLLDYNRKLADTPTELERVETEEIVDIVVSSHSLPARAKMIHTDVVLAVGHCWAETTLLMRVIDNLYSNAVHYGKESGNIWIYSRQIGNRVQIDVANSGTPIPDAERSMIFEPFYQGSHQRRGAVKGSGLGLSIARDCIRRMRGELSLITVDYADVCFRIELPLLSDNEQSENE
>CP026979.1|AYH31201.1|1261417_1265305_+|phosphoribosylformylglycinamidine-synthase
MEILRGSPALSAFRINKLLVRCKEHVLPVSDIYAEYVHFADVSAPLNNDEQAKLTRLLKYGPSLAEHEPQGRLLLVTPRPGTISPWSSKATDIAHNCGLSNVLRLERGLAFYIHAPMLSDEQWQQLGALLHDRMMESVFSDLQQAEALFSHHQPAPFKRIEILLQGRQALEEANVRLGLALAEDEIDYLLEAFNNLGRNPTDIELYMFAQANSEHCRHKIFNADWVIDGVTQPKSLFKMIKNTFEHTPDHVLSAYKDNASVMEGSAVGRFYTDTNGQYAYHQEDAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGSKPKAGLVGFSVSNLRIPGFIQPWEEEEFGKPDRIVSALDIMTEGPLGGAAFNNEFGRPALTGYFRTYEERVDSHNGAELRGYHKPIMLAGGIGNIRADHVKKGEISVGAKLIVLGGPSMNIGLGGGAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQLGEANPILFIHDVGAGGLSNAMPELVSDGGRGGRFELRDILNDEPGMSPLEVWCNESQERYVLAVAPEQLAQFDEICRRERAPYAVIGEATEELHLTMNDRHFNNKPIDLPLDVLLGKTPKMLRDVERKQVEGTPLQRDDIYLAEAVERVLHLPVVAEKTFLITIGDRSVTGMVARDQMVGPWQVPVADCAVTTASLDSYYGEAMSIGERAPVALRNFAASARLAVGEALTNIAATHIGPLTRVKLSANWMAAAGHPGEDAGLYDAVKAVGEELCPALGLTIPVGKDSMSMKTRWQEDGEDRAVTSPMSLVISAFARVEDVRNTVTPQLRTGQDNALLLIDLGAGNKALGATALAQVYRQLGRKTADVHSPEQLAGFFNAIQELVAAKVLLAYHDRSDGGLLVTLAEMAFAGHCGVTVDIASQGEDTLATLFNEELGAVIQIPTARRAEVEAILALHGLAECVHYLGQAEEGTRFTINQGAEAVYQENRSTLRRWWAETSWQMQRLRDNPQCADQEHIARQDDNDPGLNVSLTFDPKEDIAAPYIAKHVRPKVAVLREQGVNSHVEMAAAFHRAGFDAIDIHMSDLLANRRNLQDFQALVACGGFSYGDVLGAGEGWAKSILFNSRVRDEFAEFFLRPQTLALGVCNGCQMMSNLRELIPGADLWPRFVRNKSDRFEARFSLVEVEKSPSLFMNDMAGSRMPIAVSHGEGQVEVRDDTHLAAIEEHGLVALRYINHYGQVTENYPANPNGSPNGITAVTSTSGRATVMMPHPERVFRTVSNSWHPEEWGEDGPWMRMFRNARRQLG
>CP026979.1|AYH31200.1|1259692_1261201_-|membrane-bound-lytic-murein-transglycosylase-MltF
MTYKKTAVTDSLAIRPPRDNYLKPLKLNYFFIGIITLLLALALWPSIPWRSSQDVQLRQILSRGELRISTVNSPLTYAMSNGSPTGLDYELAKRFADYLGVKLVVSSRKNLDELFDDLDGDDADLLAAGLIYNHERLERFRAGPTYYSISQQMVYRLGSPRPKTLDKLQGRLVVTSGSAHAATLRDLKAEKYPQLSWESASDQSTQELLKQVADGKLDYALGDSVTIGLMQRIHPQLAVAFDLSDEEPVTWYMRRSHDDSLSAALLDFFSKIVEDGTLARLEEKYLGHVGEFDYVDTTTFLGAIDETLPDLRPLFEKYAINIDWKLLAAISYQESHWNPLATSPTGVRGLMMLTRNTAESLNVTDRIDPEQSIRGGAQYMSYMMQKMPDTIPEDEKIWFALASYNMGYAHLLDARKLTEKQKGNPDSWVDVKMRLPMLSQKRYYTQTTYGYARGQEAYNYVENIRRYMVSLEGYLIEKETKAQQQTQIAQSYPAVPLNKVPE
>CP026979.1|AYH31210.1|1277002_1278163_+|3-phenylpropionate-MFS-transporter
MVLQSTRWLALSYFTYFFCYGIFLPFWGGWLKGEGLSAESIGMLLGAGLVARFVGSLVITPSVKDPSKLITVLRGLALLSLALAVGFWLGNAWLWLMIVMIGFNLFFAPLVPLTDALAATWQKQVAMDYGKVRVWGSIAFVIASAVTGELVAIWGHSAILAILSAGLITMLLGMLFRPSVMPQTAASTAQSASVTPWKKLLSEPAVWRFLLCVSLLQGAHAAYYGFSVIYWQDSGYSASIIGYLWSLGVVAEIVIFTFSQRLFRRWSARQLLLLSAVCGVVRWGLMGATVALPWLIVIQILHCGTFTVCHLAAMRFIAARSGGGDVLRLQAVYSALAMGGSIAVMTMVSGFLFDHLQGGTFWVMALLAVPALFIRPSVSHHTVAKT
>CP026979.1|AYH31211.1|1278194_1278854_+|DUF1007-domain-containing-protein
MLHYNALKRRVGRITLLMTGLALCQPVFAHPHSFIDMQTTVESQNDNITGLRMQWTMDPITSADLLYDAGKATKDSEVWKKLAAEVMANVLGQHYFTDIYRDNQPVKYARLPTEYHLSRKGNQAVLEFVLPLSHPQPLAGKPLLISTYDPTYFVDMSYQDDKAVKLAPELVSRCKTTLVTPKPNAELQSYALSLDKNDAPDEDMDLGKQFAQRVTLQCQ
>CP026979.1|AYH31212.1|1278844_1279918_+|nickel-transporter
MSVNLGSLSRQRSLLSRLRDLWPLWLFLALLAAALYYIVGYWPQIVLQSAIWQKSLHQQMSHLLQMVEQQPRQAGLSLMMFSLVYGVLHAVGPGHGKVVIMTYLATHPSKLKSSLKLTLAASLVQGLMAVVLVTVVLGILQLSSRTLHNSSFWMEKGSFVLVAGLGLLLCFRALKQLYIALVWQPKPATILRMTPLNVSVHGRMTLSPISAPSHSLHQHDADCGCGHRHLPSQEELERDSRWRTRLMIVLAMGMRPCSGAILVLLFSKVIGVYVWGVASALVMAAGTAITISALAVLVFYCRRAVERLGANRASPVWQRTTFSLLAFAGGLILVGSGILLYLSAQPAMMGGIRPFSG
>CP026979.1|AYH31213.1|1280037_1281165_+|ABC-transporter-substrate-binding-protein
MKKWLFSVVMLLGLSASVAASANPIVIEDVSGRKVEIKSEVKRIILGEGRQIYLLAAFDTESPFQRVVGWRDDLPKADYDGYLAYEKKYPEITKLPTFGGAKDGTFNVEQALTLKPDLVLMNLESKAATDEGKLIEKLSSLGIPVVFIDFREKPFENAEKSIHIMGQLVGKPQRAEEIIKFRREQIEIVTDRLKNYQGPRPKVMIDRAGGYDEECCMSFGDENFGRMVEAAGGDNIAKNIIPGTFGTLNPEQIISSRPDVVVVTGANWKNYNTANGWVGVGPGADQKEALQRLQKLMERSAFKTLPVATDGNAHAIWHQFYDSPYQFVAIQVLAKWMHPELFKDLDPDATFRTFHEKFLPLPYQPGYWVTLPAKK
>CP026979.1|AYH31214.1|1281586_1283254_+|methyl-accepting-chemotaxis-protein-I
MNITQRLLLTFSLMSLALIALVIVTLSLLSGFQSRFEYVQDNAIPSIKDLNSLVDKSNSLVLFLYRHQTTDDDRKLPAIEQDINRTIEEIKKLNEYYLINDASSEADRQLTNTAIDQTQKLQASLPVFINASKANQNDIALGLLQGMDGPGKAVRDLLANYRKQFDLNVKMGDDLRQVNKQVYDQTWFGLLSGTLLVVLLIGFFAVRTILGIRKSLNNMNQTMEDVSNHLDLTIQADDRRKDEVGNTARAFNSLMHRVSAALASVNASSQSVSSAATQIAAGNEDLSARTEEQAASLEQTAASMTEISETVRQNAENTQQASLLAGNASRISVNSADSVSTMLSTMEHIRTSSGKITDIIALIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSSTAAREIKDLIGASNSLVSAGVEQASDVGKNMAAMKDAIQQVTDLVNEIAAATEEQSQGISQVHQAVNQMDDVTQQNASLVEEASAASQSLQEQASTLSQLVGQFIVGQMTPAALTPALASVPSGLSVPRLAPAKKKSAAAQDEGDWQRF
>CP026979.1|AYH31215.1|1283341_1283665_+|hypothetical-protein
MKSTEHSAENLGDYASLLAEFEHMTTLLTQLMNSDYRTLDLYLNNCRHLILRFTEIYKLIGKPEFEHYLKHHDAALYYNVNSVGLALRLFENMLTNMRDMLGTERLD
>CP026979.1|AYH31216.1|1283721_1284522_-|ABC-transporter-ATP-binding-protein
MSQQTPSGLRLSHFRAGYPKRQVIRDLSVPQLPRGKITVLLGPNGSGKSTLLRAMAGLNPSEGELWLDDTNLMTLPFAQRAEKVVYLPQSLPAGVHLHVLESIIVAQRASGGMHNAEKQDEVMTLLRQLGIEHLALSYLDQLSGGQKQLVGLAQSLIRQPSLLLLDEPLSALDLNYQFHVMDLVRKETRKRNIITVVVVHDINIALRHGDHVLMLQNGNLIADGAPAEVISPESLSAVYGVRGRIERCSQGVPQVIIDGLVSEPTI
>CP026979.1|AYH31217.1|1284518_1285601_-|iron-ABC-transporter-permease
MSTTTEPGIRNTATDANTIMDNYRGIIRRRVGVMAILLLIIIGSLLLDFTMGPSGLTLDVLWNTLTDPASADAGTRVIVWDIRLPYALMAIIVGLALGLAGAEMQTILNNPLASPFTLGVSSAAAFGAALAIVLGIGIPGIPAQWFISANAFIFALLAALLLDGITRWTQVATSGVVLFGIALVFTFNALVSMLQFIANEDTLQGLVFWTMGSLARASWEKLGILLLVLVIVMPISLMSSWKLTALRLGEDRAVSFGINVRRLRLATLLRISILSAISVAFVGPIGFIGLVAPHIARMIFGEDHRFYLPASALTGALVLSMASVASKNLIPGVIIPVGIVTSLVGVPFFLSIILRHRGNV
>CP026979.1|AYH31218.1|1285607_1286726_-|ABC-transporter-substrate-binding-protein
MLRKSVRSLFLTALLSAPLFSYATQYPLTVTDFDGRSVTIQQEPQRIILQDGRDIMAMALLDRDNPFQRLVAWNNLAKKQDTATWDMLKGKWPQSVGILDMGFSDKGNVDLESVLSKQPDLMIAQLRAKAALKESGVIDKLSTLNIPVLFVDYEVNPAKDTAPSIDLLGKVLNREANAKAYTDFYRQHFDAIQQKTTAITPKPSVFVEPIAGNSDSCCFTHSNSGWGGLIEAVGAKNIGSDLLPGATGFVSLEKIISMKPDVYIMTGSKRGNSQVLPLGYGASVEGVRTQANVLLNRTGISQIPAVQAKHVYGVYHHFYNHPYNIVGMEYLAKDIYPQAFASLDPDDTYHHIIQNFTSLPDSDFIFAWKQGE
>CP026979.1|AYH31219.1|1286918_1287722_-|inositol-1-monophosphatase
MHPMLNIAIRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVDRDAERLIIEVIRKSYPQHTIIGEECGELAGEDPAVQWVIDPLDGTTNFIKRLPHFAVSIAVRIKGRTEVAVVYDPMRNELFSATRGQGAQLNGYRLRSSTARDLDGTVLATGFPFKLKQHSKSYIDIISALFTQCADFRRTGSAALDLAYVAAGRVDGFFEIGLKPWDFAGGELLVREAGGIVTDFVGAHNYMTSGNLVAGNPRVVKAILGTIREELSDALKR

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Crispr_ID: CP026979_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026979_6

3938677-3938944

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGTATAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	CRT

4 spacers

The CRISPR arrays of CP026979_6

>merge|CP026979|6|3938677-3938944|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTATAGGCAGCTTAGAAAAACATCGCCACGGCGAAAAGTGTGTTCATGGCGTTCACTGCCGTATAGGCAGCTTAGAAATCAACTCTGCCCGTTGCTGCTGTCGGCGGGTAGTTCACTGCCGTATAGGCAGCTTAGAAAATCTACGAAGCTGATTATTGGTATGGGCCGCGGTTCACTGCCGTATAGGCAGCTTAGAAATCAGAAGAAATTCCGTAGTCTGTTGAGAATGTGTTCACTGCCGTGCAGGCAGCTTAAAGA

>CP026979|6|3|3938677-3938884|PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	AACATCGCCACGGCGAAAAGTGTGTTCATGGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCAACTCTGCCCGTTGCTGCTGTCGGCGGGTA
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATCTACGAAGCTGATTATTGGTATGGGCCGCG
GTTCACTGCCGTATAGGCAGCTTAGAAA

>CP026979|6|6|3938677-3938944|CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	AACATCGCCACGGCGAAAAGTGTGTTCATGGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCAACTCTGCCCGTTGCTGCTGTCGGCGGGTA
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATCTACGAAGCTGATTATTGGTATGGGCCGCG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCAGAAGAAATTCCGTAGTCTGTTGAGAATGT
GTTCACTGCCGTGCAGGCAGCTTAAAGA

>CP026979|6|3|3938677-3938944|CRT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AACATCGCCACGGCGAAAAGTGTGTTCATGGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCAACTCTGCCCGTTGCTGCTGTCGGCGGGTA
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATCTACGAAGCTGATTATTGGTATGGGCCGCG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCAGAAGAAATTCCGTAGTCTGTTGAGAATGT
GTTCACTGCCGTGCAGGCAGCTTAAAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP026979.1\|AYH33456.1\|3937839_3938490_+\|hypothetical-protein	unknown	unknown	unknown
CP026979.1\|AYH33463.1\|3943378_3943783_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336520
CP026979.1\|AYH33451.1\|3931551_3931824_+\|envelope-stress-response-protein-PspG	unknown	unknown	gnl\|CDD\|181875
CP026979.1\|AYH33455.1\|3936584_3937664_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
CP026979.1\|AYH34538.1\|3929872_3930166_+\|hypothetical-protein	unknown	unknown	unknown
CP026979.1\|AYH33452.1\|3932302_3933691_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|365848
CP026979.1\|AYH33465.1\|3944752_3945160_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
CP026979.1\|AYH33458.1\|3939777_3940392_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224203
CP026979.1\|AYH33448.1\|3928056_3928938_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293825
CP026979.1\|AYH33454.1\|3935136_3936543_+\|replicative-DNA-helicase-DnaB	unknown	unknown	gnl\|CDD\|181193
CP026979.1\|AYH33462.1\|3942936_3943353_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
CP026979.1\|AYH33450.1\|3930362_3931385_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	unknown	unknown	gnl\|CDD\|236991
CP026979.1\|AYH33457.1\|3939046_3939526_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP026979.1\|AYH33461.1\|3942404_3942884_+\|type-VI-secretion-system-tube-protein-Hcp	unknown	unknown	gnl\|CDD\|213799
CP026979.1\|AYH33459.1\|3940455_3941649_+\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
CP026979.1\|AYH33449.1\|3928925_3929582_+\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|226062
CP026979.1\|AYH33453.1\|3934022_3935009_-\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|182701
CP026979.1\|AYH33460.1\|3941782_3942286_+\|M48-family-peptidase	unknown	unknown	gnl\|CDD\|224368
CP026979.1\|AYH34539.1\|3943834_3944242_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
CP026979.1\|AYH33464.1\|3944296_3944701_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520

Protein	Function_ID	Function_description	E-value
CP026979.1\|AYH33463.1\|3943378_3943783_-\|hypothetical-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	4.97846e-27
CP026979.1\|AYH33451.1\|3931551_3931824_+\|envelope-stress-response-protein-PspG	gnl\|CDD\|181875	PRK09459, pspG, envelope stress response protein PspG.	8.76907e-26
CP026979.1\|AYH33455.1\|3936584_3937664_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
CP026979.1\|AYH33465.1\|3944752_3945160_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	9.42849e-30
CP026979.1\|AYH33452.1\|3932302_3933691_-\|cytochrome-P450	gnl\|CDD\|365848	pfam00067, p450, Cytochrome P450. Cytochrome P450s are haem-thiolate proteins involved in the oxidative degradation of various compounds. They are particularly well known for their role in the degradation of environmental toxins and mutagens. They can be divided into 4 classes, according to the method by which electrons from NAD(P)H are delivered to the catalytic site. Sequence conservation is relatively low within the family - there are only 3 absolutely conserved residues - but their general topography and structural fold are highly conserved. The conserved core is composed of a coil termed the 'meander', a four-helix bundle, helices J and K, and two sets of beta-sheets. These constitute the haem-binding loop (with an absolutely conserved cysteine that serves as the 5th ligand for the haem iron), the proton-transfer groove and the absolutely conserved EXXR motif in helix K. While prokaryotic P450s are soluble proteins, most eukaryotic P450s are associated with microsomal membranes. their general enzymatic function is to catalyze regiospecific and stereospecific oxidation of non-activated hydrocarbons at physiological temperatures.	5.10919e-61
CP026979.1\|AYH33458.1\|3939777_3940392_+\|hypothetical-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	5.07422e-38
CP026979.1\|AYH33448.1\|3928056_3928938_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293825	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.61076e-104
CP026979.1\|AYH33454.1\|3935136_3936543_+\|replicative-DNA-helicase-DnaB	gnl\|CDD\|181193	PRK08006, PRK08006, replicative DNA helicase DnaB.	0
CP026979.1\|AYH33462.1\|3942936_3943353_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	1.72883e-33
CP026979.1\|AYH33450.1\|3930362_3931385_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	gnl\|CDD\|236991	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA.	0
CP026979.1\|AYH33457.1\|3939046_3939526_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.16085e-34
CP026979.1\|AYH33461.1\|3942404_3942884_+\|type-VI-secretion-system-tube-protein-Hcp	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	6.38488e-80
CP026979.1\|AYH33459.1\|3940455_3941649_+\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
CP026979.1\|AYH33449.1\|3928925_3929582_+\|DsbA-family-protein	gnl\|CDD\|226062	COG3531, COG3531, Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones].	2.02676e-74
CP026979.1\|AYH33453.1\|3934022_3935009_-\|quinone-oxidoreductase	gnl\|CDD\|182701	PRK10754, PRK10754, NADPH:quinone reductase.	0
CP026979.1\|AYH33460.1\|3941782_3942286_+\|M48-family-peptidase	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	3.09562e-28
CP026979.1\|AYH34539.1\|3943834_3944242_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	6.76901e-40
CP026979.1\|AYH33464.1\|3944296_3944701_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	1.6661e-31

>CP026979.1|AYH33456.1|3937839_3938490_+|hypothetical-protein
MPQPSRFFGLILYYAASWLAASAILTLFALINFYTLEPTDVGGTLFGGMFGAIFDLIYWSCAALGFCFLALFRLSGWRVALILAGLVQIGISALWRIQYWQDYENEELILSPTPGELHVSILVGVAMTTIGIVKYRHAQHNSRPHSPVRSKTVTQKTLSTNTITAKTIAAFVLIALYLVLPLHLYLREPLPYCAFSPSGQQLSICLGEDDERIIVE
>CP026979.1|AYH33455.1|3936584_3937664_+|alanine-racemase
MKTATAVISRRALRHNLQRIRQLAPGSQVVAVVKANAYGHGMIESAHTFCDADCYGVARLSEALALRAAGITKPIVLLEGFFSADDLPLLVEHQLETAVHSPEQLAALEQATLSQLVSVWMKLDTGMHRLGVLPEQADAFWQRLTECRNVVQPVNIMSHFCRADEPEAGTTERQLACFDAFTQGKPGAQSIAASGGILLWPQAHRDRVRPGIILYGVSPLDNEDAAHFGFQPAMTFTSHLIAVREHKAGEAVGYGSTWTSPRDTRLGVVAVGYGDGYPRCAPAGTPVLINGREVPLSGRVSMDMITVDLGPDAQDKVGDEAILWGPALSVERIAAHTGVSAYELITRLTQRATLEYTDN
>CP026979.1|AYH33454.1|3935136_3936543_+|replicative-DNA-helicase-DnaB
MAEKRPTNKSNEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVAERVVANDFYNRAHRLIFTEMHRLLEMSRPIDLITLSESLELQGSLESAGGFAYLAELAKNTPSAANIGAYADIVRERAVVREMISVANEIADAGYDPQGRSSEDLLDLAESRVFQIAENRASKDEGPKSIDRILEDTVSRIEQLYQRPHDGVTGVSTGYQDLDKKTAGLQKSDLIIVAARPSMGKTTFAMNLCENAAMMQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISSTMGILLEKRNMYIDDSSGLTPTDVRSRARRVFREHDGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIILGKQRNGPIGSVRLTFNGQWSRFDNYAGPQYDDE
>CP026979.1|AYH33453.1|3934022_3935009_-|quinone-oxidoreductase
MAKRVQFRAYGGPEVLQYGDFTPAEPAAGEVQVENRAIGINFIDTYIRSGLYPVPDLPSGLGTEAAGVVTKVGAGVSVLKVGDRVVYAQSGLGAYSEVHNVVAEKVALLPDAISFEQAAASFLKGLTVYYLLRQTYDIKPNDVFLFHAAAGGVGLIACQWAKALGAKLIGTVGSDEKAERAKQAGAWATINYRSENISQRVAELTDGKKVPVVYDSVGKDTWEASLDSLCRRGLMVSFGNASGPVTGVNLGILNQKGSLYVTRPSLFGYVTNRAELEQASNELFSLIVSGAITVDVPQNQKFALADAQAAHRALESRSTQGSCLLIPG
>CP026979.1|AYH33452.1|3932302_3933691_-|cytochrome-P450
MRSIKRLPMPPTRGVLGHVDYLKRSDIHLQMLRWKAQYGRFYRLRLGLTSAVVIADTEWIRTIMKSRPGEFRRISSIESVFQEAGLNGVFSSEGERWENQRKLTEPMFQPAHLKYFYSSLRKVTSRLSNRFTMLAETGETIALVDEFKRYTVDITSLLAFGEDVNTLEQGDNPLSQSLRHLFPIINERCESPLPVWRYIRRARDKQFDASLNLIREYVDGFIYRQRQRIQLNPQLLDAPENMLQVMLAEQQKDGMLKDDDIVANAITLLIAGEDTTANTLTWMSFLLCSAPSVEACVFQECKEVTDSVEAILPWPLPRMPWLTAVMYESMRLKPVAPLLYLEPTKNTVIDDFLIKKGTPLLLMLNASGFDDELFQQPYDFMPERWLERGKAAFSDLQPFGGGPRMCPGRSLALMEIKLGFHALCSGFRVEAQQAASAVTESFAFTMTPSGFCVKLHKREQTQ
>CP026979.1|AYH33451.1|3931551_3931824_+|envelope-stress-response-protein-PspG
MLEIFFVIGFFIMLMLTGVSLLGVIAALFVASLFMLIGGLFSMAIKVLPWLILAVAAVWLWRKFSGRPVYNSHRYTYQKYTYRQRNGNQW
>CP026979.1|AYH33450.1|3930362_3931385_+|tRNA-dihydrouridine(20/20a)-synthase-DusA
MTDVKSDKSNTVSADSRASSLNRFSVAPMLDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGDYLAYSEEEHPLALQLGGSDPTALAQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMGEAALVADCIKAMKDSTSIPITVKTRIGIDDQDSYEFLCEFIQTVAGRGECDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPALTIAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDRELFGIDAAEPDLAGVVRAMYPYIERELSGGASLGHITRHMLGMFQGITGARQWRRYLSENAHKPGADAAVVERALTLVNLV
>CP026979.1|AYH34538.1|3929872_3930166_+|hypothetical-protein
MKLSHNFSSALRTFAYFMASGTQNTLEGIDYLSLYGKEPSAFEQVFAIYANVLELDEDGNVLNAKYAEKRATDYLRQYCDPSFTVEPPYEDWEVELH
>CP026979.1|AYH33449.1|3928925_3929582_+|DsbA-family-protein
MAAVRLHYIYDPLCGWCYGAAPLALAAQEIDGLDLILHGGGMMTGSNSRTITPEWHDYVIPHDRRIAQLTGQTFGEAYYEGLLRDTSVVLDSAPPTAAVLAAEAMDDKGMAMLYQIEQAHYVSGLKIVDTAVLRQCAEAIGLDGDAFCTELAFVRAETLSQHINASRELLAKVRGQGFPTFALEDANGNFQQIPAANYLGQVEAWRNMLTQMVNHAAA
>CP026979.1|AYH33448.1|3928056_3928938_+|MBL-fold-metallo-hydrolase
MSKSIAFTVSLLAASLGLASAANAAELKIDVFNPGEASVFPVSSEIISGDKEVALIDAQFQRNDAQTLVDRIKATGKKLTTVYISHSDPDYYFGLDVIKAAFPDAKIIATQATIDAINASKDGKVAHWGPVLKENAPKEIVVPQLLAGDSFTVDGKKLEVKGLKGPTPDRTYVWIPSLKAVVGGIPVSANIHVWLADTQTPESRVHWRETLKSIEALKPTTVVPGHFIAPTDYTLKNVTFTLQYLETVEKELAKSKNSAELIAAMKKHYPTLKEESGLELSAQVLKGEMKWPQ
>CP026979.1|AYH33457.1|3939046_3939526_+|Lrp/AsnC-family-transcriptional-regulator
MYNIDDFDLKILTLLQTNGRLTNQELSELVGLSASQCSRRRIALEQAQLILGYHARLSPNAVGLECLGLIEVRLINHTSEYVERFHQMLGEVDAIIDAYKTTGDADYLLKVAVADLPGLSTLISQILSQNKSVAHLKTSVVLNRLKENGLVTPEPPVLP
>CP026979.1|AYH33458.1|3939777_3940392_+|hypothetical-protein
MDNVIPTQKISHTRLEDVLAILIGTLMASFGIILLRQAGALTGGTAGIAFLVHYLTNISFGAAFFLLNLPFYYLAVRRMGWEFTVKTFSAVGLVSLFSDLHPLFVHFDRLNPFYATLFGNIITGIGFIVLFRHKASLGGVNVLALYLQDKYGLRAGKFQMGVDVVIVLTSLFVVSISMLIVSILGATILNLIIAMNHRPGRYAA
>CP026979.1|AYH33459.1|3940455_3941649_+|aspartate/tyrosine/aromatic-aminotransferase
MFQNVDTYAGDPILSLMEKFKQDPRADKINLSIGLYYNEQNIIPQLRAVSAAENSLRQPVQSANSYLPMEGLQPYRSAIQHLLFGESHAALAADRIATIQTLGGSGALKIGADFLKRYFPDSEVWVSDPTWENHIAIFEGAGFNVHTYPYFDGESLGVKFDAMLATLQTLPARSIVLLHPCCHNPTGSDLTTEQWDRVIEVVIARELIPFMDIAYQGFGLGIEQDAYAIRAIASAGVPALIANSFSKIFSLYSERVGGLSVVCDDTDSALRVLGQLKATVRRNYSSPPNFGAQVVSKVLNDAQLNADWKAEVEEMRTRILSMRQELVSALKNALPNRNFDYLLTQRGMFSYTGFSPEQVDRLREEFGVYLIASGRMCMAGLNHSNVQRVAAAFAAIQ
>CP026979.1|AYH33460.1|3941782_3942286_+|M48-family-peptidase
MTTLRYLNGYPPAIVAQAQTLVDQGKLGLWLEKRYPDRHHIQSDKSLYQFVAELKQRYLKNAPAISKVLYDNKQNPIKGTLGTNTFVARVQGGKLKSNNEIRIATLFRDGPEDFLRMIVIHELAHLKEKDHNKAFYQLCCHMDPDYHQLEFDMRIWLNWREMNTTSA
>CP026979.1|AYH33461.1|3942404_3942884_+|type-VI-secretion-system-tube-protein-Hcp
MANLIYASINGQKQGLISSGCSTLDSIGNRYQTGHEDQIQVLGLNHSISRDQNVAHHPINFVKPIDKSSPLLGMAISYNEKVDVTFYFYRVNSAGQLELYYEVTLTDANIVDVTCVYPHVIDNNEIMPYEKVQLKYKTIAWNHKIAGTSGYSIWEEMSL
>CP026979.1|AYH33462.1|3942936_3943353_-|DUF1240-domain-containing-protein
MELFVVKVNRPFIGAFSVFILCLSCWGTWFSLSEYLSFFKSNDVIVFSWRVGVAIFGVPLSFYFSYACFFSAIKNEHVKINNKLGEWLVKFLIFGAVVSLFSSSYISYSLSHQGYKTCPKISWMDPNKYVKDITLCDK
>CP026979.1|AYH33463.1|3943378_3943783_-|hypothetical-protein
MVKINRPFFFIYSVFIFILSCWGGWFSLHGYIDFFNLSHVVSFSWKLGMIIFLVPIVFQFSYFGFFSAMKNRPIKMNDKISNALVIFAIFGAVVSLILSMYISYSLHVQGYKVCPKNSWIAPSKYVRDIVLCKE
>CP026979.1|AYH34539.1|3943834_3944242_-|DUF1240-domain-containing-protein
MVKVNRPLVGAFAIFIFLLTCFTGWFSFNSYLDFLQLNDTIVFSWKVGLMVFGSPLLFYFSYLFFYSAINNEVAKINNKLGGGLFIIMIVGAIISLFSSFYISYNFRSYGYELCPKNSWMAPNQYVKKITLCDEW
>CP026979.1|AYH33464.1|3944296_3944701_-|DUF1240-domain-containing-protein
MVKINRPLFFSFSLFAFILSCWGGWFSLSGYIDFFNLSDVVLFSWKLGGMIFLVPIVLQFSHFSLFSAIKNKPIKMNNKISNVLVIFAILGAVISFFSSLYISYSLNELGYEVCPKTSWMSPNKYVKNIVLCKE
>CP026979.1|AYH33465.1|3944752_3945160_-|DUF1240-domain-containing-protein
MFKINRPLFFSFSVLVFIITCWGIWFSFNGYWGLFRLSDIIIFSWKVGILIFGSPMLFYFSYLGFYMAIKNKPIGMYGTLTNVCGYLFFIGVVISFIASMYISFNFRSYGYELCPKNSWMDPNKYVKSIVLCDEW

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Crispr_ID: CP026979_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026979_7

3956173-3959266

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTANAGGCAGCTTAGAAA	CRT

51 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of CP026979_7

>merge|CP026979|7|3956173-3959266|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTACAGGCAGCTTAGAAAAAACGCATCAATGAACGGCACTGCGCCGCGATGTTCACTGCCGTACAGGCAGCTTAGAAACTTCCGAAGTGGGCAATGACATCTTGCTTTCGGTTCACTGCCGTACAGGCAGCTTAGAAAACCGACGCCCCATTGATTCATGCGACGAGCACGTTCACTGCCGTACAGGCAGCTTAGAAACTGATGAAAGCCGAGAAAGCCGAGCGAAACGATGTTCACTGCCGTACAGGCAGCTTAGAAAAGATAATTTACGAAACGCGATATCGATGCGCGTTCACTGCCGTACAGGCAGCTTAGAAAAACTCGCGGACTTCCCGAGCGTCACCGCTACAGGTTCACTGCCGTACAGGCAGCTTAGAAAATTACGGATAAATGGGGTGACACTCAGGATTGGTTCACTGCCGTACAGGCAGCTTAGAAAAGCCACGCATCCAGATACATCGGGCAGTCAGGGTTCACTGCCGTACAGGCAGCTTAGAAACAGATCACGGCGGTTTTGTTCTTGCGCCATGTGTTCACTGCCGTACAGGCAGCTTAGAAAAATTCCACTGGAAAAACTGACAGCATTTACAAGTTCACTGCCGTACAGGCAGCTTAGAAATAGCGTTAGAGCCGGGACTCATCTCGTTTTACGTTCACTGCCGTACAGGCAGCTTAGAAACGTCATCAACATCTACGCCGACGGTTCATTTAGTTCACTGCCGTACAGGCAGCTTAGAAATTGCCCAGCAACTTTATAGCCAGTTGAGTAGAGTTCACTGCCGTACAGGCAGCTTAGAAACGTTTGCGGATTTTTTCATTGCATCGCTGACAGTTCACTGCCGTACAGGCAGCTTAGAAAGTCCGGACGGCAATCATTTTAGCATCGAGCACGTTCACTGCCGTACAGGCAGCTTAGAAAACGCCGGTGCTGTGGCTGAAAGACGTCCTGATGTTCACTGCCGTACAGGCAGCTTAGAAAAGGCGGTTGAAATCTGGCTGCGTCGCAGGGGAGTTCACTGCCGTACAGGCAGCTTAGAAACCAGGGCAGGAGGGAGATGAAACACGCAAGGGAGTTCACTGCCGTACAGGCAGCTTAGAAATGCTAACGCGGAAATTTGACCGAATGAGGGGGGTTCACTGCCGTACAGGCAGCTTAGAAAACTAGCGCCGCCCGGCTTGCTTGCCATGCTTCGTTCACTGCCGTACAGGCAGCTTAGAAAGATTGACATACGCACAGGCTGTTTACTGGATTGTTCACTGCCGTACAGGCAGCTTAGAAACACCGACAGACAGATTATCCGGCAGACTGGTGAGTTCACTGCCGTACAGGCAGCTTAGAAAACGAAACAATAAACCCATTAATGGTATAAGTTGTTCACTGCCGTACAGGCAGCTTAGAAACATGTCATTTTCACCTGAGCGTTAGCATTGTTGTTCACTGCCGTATAGGCAGCTTAGAAATACGCGATGACGCTGCCCGATAGTGCCGCGTTGTTCACTGCCGTATAGGCAGCTTAGAAAGAGACGTACAAGCCCCAGCTTCAGGAGGGTAGGTTCACTGCCGTATAGGCAGCTTAGAAAGCTGCGACGCCTCGGCAGCCGACACCCGCATCGTTCACTGCCGTATAGGCAGCTTAGAAAGAAGTCACGCTGGAGTTTGACGATCTGCCCGAGTTCACTGCCGTATAGGCAGCTTAGAAAAGCTTGTGCGCGATGGCATAGCGGGCAATCTCGTTCACTGCCGTATAGGCAGCTTAGAAAGAGCGGGTGATCGTCAAAGAGGTAGACAAGGCGTTCACTGCCGTATAGGCAGCTTAGAAAGCAGATACGAATACCAACTTGACCCACTACTAGTTCACTGCCGTATAGGCAGCTTAGAAACCCCTTCCCCCGACCTAATCTGTCATTTCTAAGGTTCACTGCCGTATAGGCAGCTTAGAAAAAGGTGCCGAGCCTCTTGACCGATAATGACTTGTTCACTGCCGTATAGGCAGCTTAGAAACGCTAACGTGGGGAAATATGACTCAGTCGTCCGTTCACTGCCGTATAGGCAGCTTAGAAAAATCCCATAAAACAAAAGCCCCTGCATTTCTGGTTCACTGCCGTATAGGCAGCTTAGAAAAGTGAATACCACGCCACCGACAGGTGGTTTTTGTTCACTGCCGTATAGGCAGCTTAGAAATAGGCGCTTGCTGGCATCCGGCACGTTAAATAGTTCACTGCCGTATAGGCAGCTTAGAAATTCAATTCGCCGACTTATTAGAGCTAACGGAAGTTCACTGCCGTATAGGCAGCTTAGAAAAATATTAATACAGGACAACCGACATATATCAAGTTCACTGCCGTATAGGCAGCTTAGAAATGTGATGTAATAACTGAGTCCGGTCACGGCGAGTTCACTGCCGTATAGGCAGCTTAGAAAAGATACCGAGCCCCTTGACTGCAATTTAGTGCGTTCACTGCCGTATAGGCAGCTTAGAAAAGAAATACCCTATGTCATTCTGGATAAATCAAGTTCACTGCCGTATAGGCAGCTTAGAAACTGGTCGAATAGCAGGGATAACCGGCAATGTCGTTCACTGCCGTATAGGCAGCTTAGAAAAGACAAAGATTATTGCCTGATATTCGATCACTGTTCACTGCCGTATAGGCAGCTTAGAAAGCGTGCAGTTCGCCAGCGCCGCCCTTGCAACCGTTCACTGCCGTACAGGCAGCTTAGAAACAAATCGGCGTTCGACTCCCACGCATCGGTTTGTTCACTGCCGTATAGGCAGCTTAGAAAATAAAATCCGCCAGTTGGGTAGACAGGCGGCGGTTCACTGCCGTATAGGCAGCTTAGAAATGTACTCACGCCCACGATCATCATTGTACAAAGTTCACTGCCGTACAGGCAGCTTAGAAAGGCGCGACCGTGTTCTAGACGATTTACGGGACACGTTCACTGCCGTACAGGCAGCTTAGAAATCTAGCCAGTTATGAATTTCAACCGACTTTGAGTTCACTGCCGTACAGGCAGCTTAGAAAGGCGTTGTCAGCGTAATGTTTCCGCTTCCCGTGTTCACTGCCGTGCAGGCAGTTCAGTGT

>CP026979|7|4|3956173-3959206|PILER-CR
GTTCACTGCCGTACAGGCAGCTTAGAAA	AAACGCATCAATGAACGGCACTGCGCCGCGAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	CTTCCGAAGTGGGCAATGACATCTTGCTTTCG
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACCGACGCCCCATTGATTCATGCGACGAGCAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	CTGATGAAAGCCGAGAAAGCCGAGCGAAACGAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGATAATTTACGAAACGCGATATCGATGCGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	AACTCGCGGACTTCCCGAGCGTCACCGCTACAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATTACGGATAAATGGGGTGACACTCAGGATTG
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGCCACGCATCCAGATACATCGGGCAGTCAGG
GTTCACTGCCGTACAGGCAGCTTAGAAA	CAGATCACGGCGGTTTTGTTCTTGCGCCATGT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATTCCACTGGAAAAACTGACAGCATTTACAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TAGCGTTAGAGCCGGGACTCATCTCGTTTTAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	CGTCATCAACATCTACGCCGACGGTTCATTTA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTGCCCAGCAACTTTATAGCCAGTTGAGTAGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	CGTTTGCGGATTTTTTCATTGCATCGCTGACA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTCCGGACGGCAATCATTTTAGCATCGAGCAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACGCCGGTGCTGTGGCTGAAAGACGTCCTGAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGGCGGTTGAAATCTGGCTGCGTCGCAGGGGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	CCAGGGCAGGAGGGAGATGAAACACGCAAGGGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGCTAACGCGGAAATTTGACCGAATGAGGGGG
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACTAGCGCCGCCCGGCTTGCTTGCCATGCTTC
GTTCACTGCCGTACAGGCAGCTTAGAAA	GATTGACATACGCACAGGCTGTTTACTGGATT
GTTCACTGCCGTACAGGCAGCTTAGAAA	CACCGACAGACAGATTATCCGGCAGACTGGTGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACGAAACAATAAACCCATTAATGGTATAAGTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	CATGTCATTTTCACCTGAGCGTTAGCATTGTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TACGCGATGACGCTGCCCGATAGTGCCGCGTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	GAGACGTACAAGCCCCAGCTTCAGGAGGGTAG
GTTCACTGCCGTATAGGCAGCTTAGAAA	GCTGCGACGCCTCGGCAGCCGACACCCGCATC
GTTCACTGCCGTATAGGCAGCTTAGAAA	GAAGTCACGCTGGAGTTTGACGATCTGCCCGA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCTTGTGCGCGATGGCATAGCGGGCAATCTC
GTTCACTGCCGTATAGGCAGCTTAGAAA	GAGCGGGTGATCGTCAAAGAGGTAGACAAGGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	GCAGATACGAATACCAACTTGACCCACTACTA
GTTCACTGCCGTATAGGCAGCTTAGAAA	CCCCTTCCCCCGACCTAATCTGTCATTTCTAAG
GTTCACTGCCGTATAGGCAGCTTAGAAA	AAGGTGCCGAGCCTCTTGACCGATAATGACTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGCTAACGTGGGGAAATATGACTCAGTCGTCC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AATCCCATAAAACAAAAGCCCCTGCATTTCTG
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGTGAATACCACGCCACCGACAGGTGGTTTTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TAGGCGCTTGCTGGCATCCGGCACGTTAAATA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTCAATTCGCCGACTTATTAGAGCTAACGGAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AATATTAATACAGGACAACCGACATATATCAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGTGATGTAATAACTGAGTCCGGTCACGGCGA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGATACCGAGCCCCTTGACTGCAATTTAGTGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGAAATACCCTATGTCATTCTGGATAAATCAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	CTGGTCGAATAGCAGGGATAACCGGCAATGTC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGACAAAGATTATTGCCTGATATTCGATCACT
GTTCACTGCCGTATAGGCAGCTTAGAAA	GCGTGCAGTTCGCCAGCGCCGCCCTTGCAACC
GTTCACTGCCGTACAGGCAGCTTAGAAA	CAAATCGGCGTTCGACTCCCACGCATCGGTTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATAAAATCCGCCAGTTGGGTAGACAGGCGGCG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGTACTCACGCCCACGATCATCATTGTACAAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GGCGCGACCGTGTTCTAGACGATTTACGGGACAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TCTAGCCAGTTATGAATTTCAACCGACTTTGA
GTTCACTGCCGTACAGGCAGCTTAGAAA

>CP026979|7|7|3956173-3959266|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	AAACGCATCAATGAACGGCACTGCGCCGCGAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	CTTCCGAAGTGGGCAATGACATCTTGCTTTCG
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACCGACGCCCCATTGATTCATGCGACGAGCAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	CTGATGAAAGCCGAGAAAGCCGAGCGAAACGAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGATAATTTACGAAACGCGATATCGATGCGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	AACTCGCGGACTTCCCGAGCGTCACCGCTACAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATTACGGATAAATGGGGTGACACTCAGGATTG
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGCCACGCATCCAGATACATCGGGCAGTCAGG
GTTCACTGCCGTACAGGCAGCTTAGAAA	CAGATCACGGCGGTTTTGTTCTTGCGCCATGT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATTCCACTGGAAAAACTGACAGCATTTACAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TAGCGTTAGAGCCGGGACTCATCTCGTTTTAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	CGTCATCAACATCTACGCCGACGGTTCATTTA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTGCCCAGCAACTTTATAGCCAGTTGAGTAGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	CGTTTGCGGATTTTTTCATTGCATCGCTGACA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTCCGGACGGCAATCATTTTAGCATCGAGCAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACGCCGGTGCTGTGGCTGAAAGACGTCCTGAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGGCGGTTGAAATCTGGCTGCGTCGCAGGGGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	CCAGGGCAGGAGGGAGATGAAACACGCAAGGGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGCTAACGCGGAAATTTGACCGAATGAGGGGG
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACTAGCGCCGCCCGGCTTGCTTGCCATGCTTC
GTTCACTGCCGTACAGGCAGCTTAGAAA	GATTGACATACGCACAGGCTGTTTACTGGATT
GTTCACTGCCGTACAGGCAGCTTAGAAA	CACCGACAGACAGATTATCCGGCAGACTGGTGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACGAAACAATAAACCCATTAATGGTATAAGTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	CATGTCATTTTCACCTGAGCGTTAGCATTGTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TACGCGATGACGCTGCCCGATAGTGCCGCGTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	GAGACGTACAAGCCCCAGCTTCAGGAGGGTAG
GTTCACTGCCGTATAGGCAGCTTAGAAA	GCTGCGACGCCTCGGCAGCCGACACCCGCATC
GTTCACTGCCGTATAGGCAGCTTAGAAA	GAAGTCACGCTGGAGTTTGACGATCTGCCCGA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCTTGTGCGCGATGGCATAGCGGGCAATCTC
GTTCACTGCCGTATAGGCAGCTTAGAAA	GAGCGGGTGATCGTCAAAGAGGTAGACAAGGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	GCAGATACGAATACCAACTTGACCCACTACTA
GTTCACTGCCGTATAGGCAGCTTAGAAA	CCCCTTCCCCCGACCTAATCTGTCATTTCTAAG
GTTCACTGCCGTATAGGCAGCTTAGAAA	AAGGTGCCGAGCCTCTTGACCGATAATGACTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGCTAACGTGGGGAAATATGACTCAGTCGTCC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AATCCCATAAAACAAAAGCCCCTGCATTTCTG
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGTGAATACCACGCCACCGACAGGTGGTTTTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TAGGCGCTTGCTGGCATCCGGCACGTTAAATA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTCAATTCGCCGACTTATTAGAGCTAACGGAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AATATTAATACAGGACAACCGACATATATCAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGTGATGTAATAACTGAGTCCGGTCACGGCGA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGATACCGAGCCCCTTGACTGCAATTTAGTGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGAAATACCCTATGTCATTCTGGATAAATCAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	CTGGTCGAATAGCAGGGATAACCGGCAATGTC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGACAAAGATTATTGCCTGATATTCGATCACT
GTTCACTGCCGTATAGGCAGCTTAGAAA	GCGTGCAGTTCGCCAGCGCCGCCCTTGCAACC
GTTCACTGCCGTACAGGCAGCTTAGAAA	CAAATCGGCGTTCGACTCCCACGCATCGGTTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATAAAATCCGCCAGTTGGGTAGACAGGCGGCG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGTACTCACGCCCACGATCATCATTGTACAAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GGCGCGACCGTGTTCTAGACGATTTACGGGACAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TCTAGCCAGTTATGAATTTCAACCGACTTTGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GGCGTTGTCAGCGTAATGTTTCCGCTTCCCGT
GTTCACTGCCGTGCAGGCAGTTCAGTGT

>CP026979|7|4|3956173-3959266|CRT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AAACGCATCAATGAACGGCACTGCGCCGCGAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	CTTCCGAAGTGGGCAATGACATCTTGCTTTCG
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACCGACGCCCCATTGATTCATGCGACGAGCAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	CTGATGAAAGCCGAGAAAGCCGAGCGAAACGAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGATAATTTACGAAACGCGATATCGATGCGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	AACTCGCGGACTTCCCGAGCGTCACCGCTACAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATTACGGATAAATGGGGTGACACTCAGGATTG
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGCCACGCATCCAGATACATCGGGCAGTCAGG
GTTCACTGCCGTACAGGCAGCTTAGAAA	CAGATCACGGCGGTTTTGTTCTTGCGCCATGT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATTCCACTGGAAAAACTGACAGCATTTACAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TAGCGTTAGAGCCGGGACTCATCTCGTTTTAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	CGTCATCAACATCTACGCCGACGGTTCATTTA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTGCCCAGCAACTTTATAGCCAGTTGAGTAGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	CGTTTGCGGATTTTTTCATTGCATCGCTGACA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTCCGGACGGCAATCATTTTAGCATCGAGCAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACGCCGGTGCTGTGGCTGAAAGACGTCCTGAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGGCGGTTGAAATCTGGCTGCGTCGCAGGGGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	CCAGGGCAGGAGGGAGATGAAACACGCAAGGGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGCTAACGCGGAAATTTGACCGAATGAGGGGG
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACTAGCGCCGCCCGGCTTGCTTGCCATGCTTC
GTTCACTGCCGTACAGGCAGCTTAGAAA	GATTGACATACGCACAGGCTGTTTACTGGATT
GTTCACTGCCGTACAGGCAGCTTAGAAA	CACCGACAGACAGATTATCCGGCAGACTGGTGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACGAAACAATAAACCCATTAATGGTATAAGTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	CATGTCATTTTCACCTGAGCGTTAGCATTGTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TACGCGATGACGCTGCCCGATAGTGCCGCGTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	GAGACGTACAAGCCCCAGCTTCAGGAGGGTAG
GTTCACTGCCGTATAGGCAGCTTAGAAA	GCTGCGACGCCTCGGCAGCCGACACCCGCATC
GTTCACTGCCGTATAGGCAGCTTAGAAA	GAAGTCACGCTGGAGTTTGACGATCTGCCCGA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCTTGTGCGCGATGGCATAGCGGGCAATCTC
GTTCACTGCCGTATAGGCAGCTTAGAAA	GAGCGGGTGATCGTCAAAGAGGTAGACAAGGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	GCAGATACGAATACCAACTTGACCCACTACTA
GTTCACTGCCGTATAGGCAGCTTAGAAA	CCCCTTCCCCCGACCTAATCTGTCATTTCTAAG
GTTCACTGCCGTATAGGCAGCTTAGAAA	AAGGTGCCGAGCCTCTTGACCGATAATGACTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGCTAACGTGGGGAAATATGACTCAGTCGTCC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AATCCCATAAAACAAAAGCCCCTGCATTTCTG
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGTGAATACCACGCCACCGACAGGTGGTTTTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TAGGCGCTTGCTGGCATCCGGCACGTTAAATA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTCAATTCGCCGACTTATTAGAGCTAACGGAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AATATTAATACAGGACAACCGACATATATCAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGTGATGTAATAACTGAGTCCGGTCACGGCGA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGATACCGAGCCCCTTGACTGCAATTTAGTGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGAAATACCCTATGTCATTCTGGATAAATCAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	CTGGTCGAATAGCAGGGATAACCGGCAATGTC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGACAAAGATTATTGCCTGATATTCGATCACT
GTTCACTGCCGTATAGGCAGCTTAGAAA	GCGTGCAGTTCGCCAGCGCCGCCCTTGCAACC
GTTCACTGCCGTACAGGCAGCTTAGAAA	CAAATCGGCGTTCGACTCCCACGCATCGGTTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATAAAATCCGCCAGTTGGGTAGACAGGCGGCG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGTACTCACGCCCACGATCATCATTGTACAAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GGCGCGACCGTGTTCTAGACGATTTACGGGACAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TCTAGCCAGTTATGAATTTCAACCGACTTTGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GGCGTTGTCAGCGTAATGTTTCCGCTTCCCGT
GTTCACTGCCGTGCAGGCAGTTCAGTGT

Protein	Signature genes	Signature genes Name	Protein_function
CP026979.1\|AYH33475.1\|3954896_3955877_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
CP026979.1\|AYH33467.1\|3945659_3946064_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
CP026979.1\|AYH33479.1\|3963604_3965446_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|224490
CP026979.1\|AYH33473.1\|3951216_3951453_-\|hypothetical-protein	unknown	unknown	unknown
CP026979.1\|AYH33466.1\|3945206_3945635_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
CP026979.1\|AYH33484.1\|3969457_3970507_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
CP026979.1\|AYH33470.1\|3947885_3948899_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
CP026979.1\|AYH33471.1\|3948912_3949845_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|378221
CP026979.1\|AYH33477.1\|3959743_3962578_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
CP026979.1\|AYH34540.1\|3965674_3966133_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP026979.1\|AYH33469.1\|3947321_3947876_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
CP026979.1\|AYH33476.1\|3959306_3959726_-\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|376651
CP026979.1\|AYH33478.1\|3962827_3963370_+\|single-stranded-DNA-binding-protein-SSB1	unknown	unknown	gnl\|CDD\|236362
CP026979.1\|AYH33472.1\|3949841_3951176_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|187866
CP026979.1\|AYH33480.1\|3966200_3966791_+\|hypothetical-protein	unknown	unknown	unknown
CP026979.1\|AYH33482.1\|3967474_3967906_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP026979.1\|AYH33481.1\|3966902_3967334_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
CP026979.1\|AYH33474.1\|3951603_3954900_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
CP026979.1\|AYH33483.1\|3967997_3969416_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|224089
CP026979.1\|AYH33468.1\|3946056_3946917_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP026979.1\|AYH33475.1\|3954896_3955877_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
CP026979.1\|AYH33467.1\|3945659_3946064_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	1.0748e-37
CP026979.1\|AYH33479.1\|3963604_3965446_+\|amidohydrolase	gnl\|CDD\|224490	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only].	9.91026e-141
CP026979.1\|AYH33481.1\|3966902_3967334_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	6.16443e-30
CP026979.1\|AYH33466.1\|3945206_3945635_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	4.01506e-41
CP026979.1\|AYH33470.1\|3947885_3948899_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
CP026979.1\|AYH33471.1\|3948912_3949845_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	9.42419e-154
CP026979.1\|AYH33478.1\|3962827_3963370_+\|single-stranded-DNA-binding-protein-SSB1	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	1.20048e-109
CP026979.1\|AYH33477.1\|3959743_3962578_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP026979.1\|AYH34540.1\|3965674_3966133_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.13034e-15
CP026979.1\|AYH33469.1\|3947321_3947876_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	7.75946e-99
CP026979.1\|AYH33476.1\|3959306_3959726_-\|YjbQ-family-protein	gnl\|CDD\|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	1.9323e-59
CP026979.1\|AYH33472.1\|3949841_3951176_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	0
CP026979.1\|AYH33482.1\|3967474_3967906_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.89404e-11
CP026979.1\|AYH33483.1\|3967997_3969416_+\|DNA-binding-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	6.7194e-137
CP026979.1\|AYH33474.1\|3951603_3954900_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
CP026979.1\|AYH33484.1\|3969457_3970507_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.9728e-79

>CP026979.1|AYH33475.1|3954896_3955877_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDNAFSPSDLKTILHSKRANVYYLQHCRILVNGGRVEYVTEEGSQSLYWNIPIANTSVVMLGTGTSVTQAAMREFARAGVMVGFCGGGGTPLFAANEAEIAVSWLSPQSEYRPTEYLQDWVSFWFDDEKRLAAAVAFQQVRIIQIRQHWLSSRLSRESRFTFKADHLQALLDRYEKGLTNCRTSNDVLVQEAMMTKALYKLAANAVSYGDFTRAKRGGGTDLANRFLDHGNYLAYGLAAVSTWVLGLPHGLAVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMEGEDEQEFRQRCLTAFQQSEALDVMIGSLQDVASKLSQVAR
>CP026979.1|AYH33474.1|3951603_3954900_-|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISECNKRALVETRRILDQFAERKGERSWQTAITLEGLNTLRKLLRKTARRNTAVACHWIRSTNHTELLWVVGNLRRFNAQGSVPTNTTSRDVLRTKDENPWHSAEVFSLLAAIAGLFHDVGKANALFQAGLSGTGPHSQPYRHEWVSLRLFQAFVGEQDDKAWLTMLSTITPEAEVALLATLQHDKPTFSDSPFRTLPPLAQTVAWLIVSHHRLPVFNKAVELAPNSSEPQLSFAETWLTDHTSAQWNAINHYKTHWTSSEREQNWQFPNGTPLRSAVWREKARKFAGRALKLPSFIHFSQLDQRLTVHLARLALMLADHHYSAGTATLGWQDITYPVWANTDRKTREYKQRLDEHCVGVGQNALLLGRSLPHLRDTLPAITRHKGFRQRSTHPRFRWQDRAFDLAGSIRETTKQHGFFGINMASTGRGKTFANARIMYGLSDEAIGCRFSVALGLRTLTLQTGDALRQRLKLDEDDLAVLIGSQAVQDLHEMRKENQQRQQNTPQTGSESADPLFSEHQYVRYDGSLDDGRLKAWLERSPTLHQLLSAPVLITTIDHLMPATEGLRGGHQIAPMLRLLTSDLVLDEPDDFGLEDLPALCRLVNWAGMLGSRVLLSSATLPPALIRALFDAYLDGRAAWQQAYGTPNAPLNVCCGWFDEFDCQHAQYGDVKDFMIKLDAFVHQRLKNLTKDELPLRFATIVPVSSPSKNADDVHLAVAQAIHPRILDLHSQHHQQHESGKTVSLGLVRMANIDPLVAATRQLLSIPSPPDTCIHYCVYHSQHPLAMRSYIEQRLDAALMRNDADALWQVEEIRQAIEKAPQQHHVFVVLATSVAEVGRDHDYDWAIVEPSSMRSLIQLAGRILRHRQDEQYVPKTPNIYLLSHNIRALRGEDIAYCKPGFESQDDSLDTHDLHQLLQEKEYRHLSAAPRIVQPASFTKPLSLVALEHAVLGKTLLGLKNKKLDDLKRPPAAFWWRAHPHWNGELQRRTPFRQSAKDEAYTLWIADDDEEPVFMVQDDGPSGWKPNDIARPVTLNMAEGVSAWIEPDYHALYQRLAEEKQWELSWVSARFGEIRLREEKDWYWHPLLGVFGALS
>CP026979.1|AYH33473.1|3951216_3951453_-|hypothetical-protein
MSFLRLNEIFSYHARIVQALSRSQHMKRLNVIGLAVLLAAILVVILCMKPITMYINNQADSSAKGQQFSIFSITINRN
>CP026979.1|AYH33472.1|3949841_3951176_-|type-I-F-CRISPR-associated-protein-Csy1
MRGEKLKTFILSYISTRKQAKLDAFDKDAEKKRAALSGEALAVTELELAQVRREIEQKHEVQNWLTDAASRAGQISLVTHALKFTHSDARGSSIFSADTVADAKTLSTATLAQPAIDAVGNAAALDVAKLLQTEYDGDSLVAALQRGDHSALEALAESPEQLAQWLAGFQQVFTDRQPSSHKLAKQIYFPLANGEYHLLSPLYSSSLAQALHQRINAVRFGDEAKAIRQAQKASQWHDQLSISYPNLAVQNMGGTKPQNISALNSSRSGRSYLLSSAPPQWNSIEKPPQQHESIFRPRGEVDYYTRATLAQMQRFLLSVKEVENNRDIRQQRLRYLDQLIDQLFFYVASVQNLPVGWSAESELKRAQQLWLDPYRADTDTVFRREREAGDWQQAVAYDFGRWLNRRLKHENLIFGEVERREWSTAALFKRRMREMEGTLKEELA
>CP026979.1|AYH33471.1|3948912_3949845_-|type-I-F-CRISPR-associated-protein-Csy2
MSTLIILRRIQVENANAIAGLTYGFPAITHFLGFTHALSRKLQASYGLTLDGCGVVSHQHQLHAYGSSWERSFALTRNPLTKEAKTAAFNEEGRMHMTVSLLIRCDGQIPADTTALCEHLKQQAQCQRLAGGTVIDIERVTIQSLPVDEVENRGVMRRLLPGFVLRDRTSLLHRHFQALQQDNPQAEMIDAWLDFAALKMQAERDPSDNAVQWKYLPKPGDGGFLTPLMIGYRAISPLYAPGEVDKTRDPHTPFCFAEAAYGIGEWQGAHRINDIRQILWEYDHQNGDYHCRQLADTDSAAEDTSYEFDY
>CP026979.1|AYH33470.1|3947885_3948899_-|type-I-F-CRISPR-associated-protein-Csy3
MAKATTALKTASVLAFERKLANSDALMYAGNWTQQDNWTAIAIQEKSVRGTISNRLKNALTSDTTKLDAEIQKANLQKVDVAALPFDADTLKVVFTLRVLGNLAQPSVCNDQDYQTALGNIITGYAQDQGFGTLAARYAENIANGRFLWRNRVGAEAIRVVVTRKGEKSWEFNGEDYSLRQFSQPTGDLAALAQAIEEGLAGDASALFTVEAYVQLGNGQEVFPSQELVLDEKARNGKSKILYQVNDVAAIHSQKIGNALRTIDDWYPAADEAGPIAVEPYGSVTSRGKAYRQPKEKMDFYTLLDNWVIKGDVPVPEQQHYVIATLIRGGVFGEKGE
>CP026979.1|AYH33469.1|3947321_3947876_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYIDIRVQPDPEFTAPQLLNALFAKLHRALGQLADGKIGISFPEVGKTLGECLRLHGTADALSTLEKTSWLKGLRDYTQVSECKAVPNNVKFRTVRRVQLKTSAERLRRRSVNKGWLTEAEAAARIPDAVEKRSTLPFVQIKSLSNGQMFFVFVEHGPLQNAPATGRFSSYGLSAEATVPWF
>CP026979.1|AYH33468.1|3946056_3946917_-|hypothetical-protein
MKYDPVLKTLVDDDYRLEDHLDFKKQHADINDQKLRAQLNEINDDNIHAILTAQEATYFLKTLCTPNPNQSWKTAIFGCTDPVSSFAGNIAEAVSVSRIVMEIKGFGVKATEYIGKDGNKYIKLSGYPGVRKYSNATRYLNISHKIVDIGIGTKGIESGIAAGARLCIIFSAAYRTIELMFKDEYALTDFFVNLTMDAAKLAISIGVAWGAKTAATSVMVATGGSVIIIACGVFALGVIVSFSLLWLDDRYKISETIINNLKSHRSQYTPYHPDQFFNTWGRYSRG
>CP026979.1|AYH33467.1|3945659_3946064_-|DUF1240-domain-containing-protein
MVKVNRPLVGAFAIFIFLLTCFTGWFSFNSYLDFLQLTDVIVFSWKVGLMVFCSPLLFYFSYLFLYSVVNNEVARINNKLGGGLVIIMIIGGVISLFSSLYISYSLNELGYEVCPKTSWMSPNKYVKNIDLCKE
>CP026979.1|AYH33466.1|3945206_3945635_-|DUF1240-domain-containing-protein
MPGGDTAVVKVNRPLIGSFALFLFLASCWGCWFSLSGYLAFFESNDVIIFSWKVGVLIFAAPLLFYFSYLAFYSVIKNEPAKMNNKLANILAMIAIFGAVVSLFLSIYVSYDLNIQSYKMCPKISWMDPNKYVKDIVFCDKW
>CP026979.1|AYH33476.1|3959306_3959726_-|YjbQ-family-protein
MWAQYEIRLKPKARGFHLVTDEILAQVTALRQIKAGLMHVFIKHTSAALTINENADPTVRQDFESFFNRLVPEDEPYYRHIYEGSDDMPAHLKGSLLGNSLTLPITDGCLNIGTWQGIYLCEHRNHGGSRSLVVTLNGE
>CP026979.1|AYH33477.1|3959743_3962578_-|excinuclease-ABC-subunit-UvrA
MDKIEVRGARTHNLKNINLIIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPEHDVPLDAQTVSQMVDNVLAQPEGKRLMLLAPIVKDRKGEHSKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALDLSGGSVVVADMDDPTQPELLFSANFACPVCGYSMHELEPRMFSFNNPAGACPSCDGLGVQQFFDPVRVVQNAELSLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDVDAPFEDQTAAVQKVILYGSGKENVEFKYINDRGDTSVRRHPFEGVLHNMERRYKETESTAVREELAKFISNRSCASCGGTRLREEARNVFVEQTTLPQISDMSIGHAMTFFQNMKLSGQRAQIAEKVLKEIGDRLKFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLVHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGQIVAEGTMEEIMAVPGSLTGQFLSGKRKIEIPKQRVPADPTKVLKLIGAKGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPLAQRQLNGATLAEPAAYREIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPESRTRGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKGKRYNRETLEIKYKGKGIHEVLDMTIEEAREFFDAIPALARKLQTLIDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIEQLLTVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAACEQSHTARFLRPILAREA
>CP026979.1|AYH33478.1|3962827_3963370_+|single-stranded-DNA-binding-protein-SSB1
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQAQQRPAQNSAPAQSNEPPMDFDDDIPF
>CP026979.1|AYH33479.1|3963604_3965446_+|amidohydrolase
MEKNSTRRIATKNRSPNTVNNTSSTQAKHAVTGRYSFRLAALAVTVSGLFFSSPGLMAAETAATADLVLRNGNIYTVNQGQPWAEAVAVRDGRYVFIGSNAQAAEFIGPKTQVVDLNGSMAMPGINDVHAHPLDGGYEDIYSCNFAQTSSLDGILNQVSECAQKAGPGEWVVGSAWGSPHMAELSTAEALAKLDKVSNGRPVILRDDSYHNRWINSEAMRLATITAQSVSPAGGVIVKDAKTGEPTGLLQEFPAFQHVQSLVPVPTEEQRLTSGRGAAKTMVSLGITGVQEAVSSEVNLRIWSKIDRAEGLPLRIIGSIVSTPLLDEGAAGLELVARRDVYRTTNFFPDRFKFVLDGVPPAHTAKLIDPYLPTKTHGDHYHGDTHYTTEQVVEILSKLDKQGISTKLHAAGDGSLRLALDAVEQVRKINGPNGPMHQIAHTHLISPQDMPRFAQLRVAADLSPMLWFPSDMTNASVVTIGEERMKDFVPTVKLLRSGAVVAGGSDWPAGGPTPSPWIGIEGLVTRQNPLGDAPGTLAPEEAVDLSEAIRIYTINSAKAMGIEKETGSVELGKSADLIVLDRHLFNVPIKQVHRANVVKTYFKGQLVHSAPEKS
>CP026979.1|AYH34540.1|3965674_3966133_+|GNAT-family-N-acetyltransferase
MMNLDREIMINSVEPEDYDQWLPYWESYQAFYNVQLTDDVTKTTWDRFFKAEIPVHCAIARKGAHIIGFAHFVFHDSTWGVNPYCYLEDLFVAPTARGKCVGKKLIEYVREKAQEKHCDRLYWHTQETNKTAQRLYNWVAEKPGIIEYRMPL
>CP026979.1|AYH33480.1|3966200_3966791_+|hypothetical-protein
MNYQSTSLFIYTVRIFFAISLCGALALVGISSPIFYLLAMGLVYPVILSLRLHSLSEKGIAFLPKEKSEWMVYVHGIPVRETRTSLTNPYFFSAESIRTFSLRAYIGKLLVQICAVILLVQQTMTVNWPWLYLGVVVAALWFAYALAMTIIELVSIMRDRWFIEKLVSPSQSEWYGGYIDFRDYRVTVLERLLSLK
>CP026979.1|AYH33481.1|3966902_3967334_-|carboxymuconolactone-decarboxylase-family-protein
MSTLRLPYQTLSPEAYQGFGMTKKALNKSSLGKQLIELVYLRVSQINGCAFCLEMHASALRADGVPDTKLDSLAGWRVSAQFNERERVALAWTESLVDVAHSHAPDEDFEPLKAHFSDAEIADLSFAVALMSAFNRLAIGMRQ
>CP026979.1|AYH33482.1|3967474_3967906_-|N-acetyltransferase
MSTFRLSLIDSDRDYLACFNVMRELRPHLPDAATFTTQARRQAGQGYHLMAAWQGDLVMGLVGYRIQENLLYGRFLYVDDLVVAVAARDKGLGGLLIEAMREEAQRQGCAHLVLDTALGNALAQRFYFRQGLLSKGLHFSQAL
>CP026979.1|AYH33483.1|3967997_3969416_+|DNA-binding-protein
MDMQHLKPSREHDAPLYLQLYRRYRDAITAGKLHPGDRVPSVRSLASELNLARGTVEMAYQMLAGEGYFLTRGPAGTIVSPQLEKLTESGYITLSRSQIPSRPQTEAAQVQPFQLGLPALDAFPRKTWARLAGKNLRTLDTAAMIYPDPAGYEPLRRAIATYLGISRGITCTYEQVFITAGYRGALELVCRTLLQPGDVGWFEDPGYLFARQFLERAGMRLEPVPVDEEGLNVDIGQRRAAEARFAVVTPTHQSPMGVALSLPRRLQLLEWASHRRSWIIEDDYDSEFRYHGRPLPALKSLDRDGRVLYTGTFSKVLLPGLRLAYLVVPEPQIERFKETTNHFGCSGSILPQATVADFMEQGHFARHLRKMRSLYAMRRSYLVDELLQTLGSYLTVQPQAGGIHVLATLATRGDDQSLAAAAQSHGLAIQALNDWRMCGPSRGGILMGFTNVADTAMAKVLVHRLAAAIGLS
>CP026979.1|AYH33484.1|3969457_3970507_-|LacI-family-transcriptional-regulator
MATLKDIADRAGVSISTVSRALNGTAPISAKVRQHIMAIATEQGYPLHKVGKATVTQTEPLRHILLATPRNLMLESEYNLVSLTLINALKTLCLQRNIQLRPFLGEHDTINEQQLLRELQGGKESGILIVNDDHPTLLNAVAESGIPAVLINGEDPSMRLSSVTPANHYAAAAAVRYLIDQGHTRILHLTWTSRMTIKQRERGYRDALAQAGIAVDDDLILSLPDFHPRTARDALLRWLTANPDRLGVTAIFCAADNQAIGVIDALYQHGLRVPEDMSVMGMDDILPFDMLPVSLTTVHLPFETIARAALQLLAQQMTPSQALGIAQRTELAGKVVVRESVRRIGSNTD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP026979_7	7.4\|3956381\|33\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956381-3956413	33	CP026979.1	3688093-3688125	0	1.0
CP026979_7	7.21\|3957403\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957403-3957434	32	CP026979.1	3377781-3377812	1	0.969

1. spacer 7.4|3956381|33|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to position: 3688093-3688125, mismatch: 0, identity: 1.0

ctgatgaaagccgagaaagccgagcgaaacgat	CRISPR spacer
ctgatgaaagccgagaaagccgagcgaaacgat	Protospacer
*********************************

2. spacer 7.21|3957403|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to position: 3377781-3377812, mismatch: 1, identity: 0.969

gattgacatacgcacaggctgtttactggatt	CRISPR spacer
gattgacatacgcacaggcggtttactggatt	Protospacer
******************* ************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026979_7	7.8\|3956622\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956622-3956653	32	NZ_KM670336	Salmonella enterica subsp. enterica serovar Senftenberg strain SRC119 plasmid pSRC119-A/C, complete sequence	153097-153128	1	0.969
CP026979_7	7.8\|3956622\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956622-3956653	32	NZ_CP014764	Klebsiella pneumoniae strain KPNIH39 plasmid pKPN-704, complete sequence	29170-29201	1	0.969
CP026979_7	7.8\|3956622\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956622-3956653	32	NZ_CP020602	Pseudomonas aeruginosa strain E6130952 plasmid pJHX613, complete sequence	33463-33494	1	0.969
CP026979_7	7.21\|3957403\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957403-3957434	32	NC_019522	Pectobacterium phage ZF40, complete genome	21160-21191	1	0.969
CP026979_7	7.8\|3956622\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956622-3956653	32	NZ_CP015073	Escherichia coli strain Ecol_743 plasmid pEC743_4, complete sequence	24324-24355	2	0.938
CP026979_7	7.8\|3956622\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956622-3956653	32	NZ_CP045255	Proteus mirabilis strain L90-1 plasmid pL902, complete sequence	22312-22343	2	0.938
CP026979_7	7.8\|3956622\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956622-3956653	32	AP018710	Uncultured bacterium plasmid pSN1216-29 DNA, complete sequence	32464-32495	2	0.938
CP026979_7	7.8\|3956622\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956622-3956653	32	NZ_CP046349	Citrobacter portucalensis strain FDAARGOS_738 plasmid unnamed2, complete sequence	28581-28612	2	0.938
CP026979_7	7.8\|3956622\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956622-3956653	32	NZ_CP021004	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6166 plasmid pE, complete sequence	31434-31465	2	0.938
CP026979_7	7.46\|3958905\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3958905-3958936	32	NZ_CP021004	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6166 plasmid pE, complete sequence	14637-14668	2	0.938
CP026979_7	7.4\|3956381\|33\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956381-3956413	33	AJ560763	Bacteriophage Aaphi23 complete genome	13470-13502	3	0.909
CP026979_7	7.4\|3956381\|33\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956381-3956413	33	NC_004827	Bacteriophage Aaphi23, complete genome	13470-13502	3	0.909
CP026979_7	7.25\|3957644\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957644-3957675	32	NZ_CP045255	Proteus mirabilis strain L90-1 plasmid pL902, complete sequence	16984-17015	3	0.906
CP026979_7	7.46\|3958905\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3958905-3958936	32	NZ_CP046349	Citrobacter portucalensis strain FDAARGOS_738 plasmid unnamed2, complete sequence	8518-8549	3	0.906
CP026979_7	7.28\|3957824\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957824-3957855	32	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	1554219-1554250	5	0.844
CP026979_6	6.2\|3938765\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3938765-3938796	32	NZ_CP018777	Staphylococcus condimenti strain StO 2014-01 plasmid pStO2014-01, complete sequence	27312-27343	6	0.812
CP026979_6	6.3\|3938825\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3938825-3938856	32	NZ_CP009861	Escherichia coli strain ECONIH1 plasmid pECO-b75, complete sequence	15299-15330	6	0.812
CP026979_7	7.27\|3957764\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957764-3957795	32	CP036421	Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence	57196-57227	6	0.812
CP026979_2	2.6\|441039\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441039-441070	32	NC_019522	Pectobacterium phage ZF40, complete genome	200-231	7	0.781
CP026979_2	2.15\|441588\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441588-441619	32	NZ_CP041418	Escherichia coli strain STEC711 plasmid pSTEC711_2, complete sequence	1831-1862	7	0.781
CP026979_6	6.1\|3938705\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3938705-3938736	32	NZ_CP020900	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence	324763-324794	7	0.781
CP026979_7	7.4\|3956381\|33\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956381-3956413	33	KU310944	Pseudomonas phage YMC11/06/C171_PPU_BP, complete genome	17085-17117	7	0.788
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MT446423	UNVERIFIED: Escherichia virus TH58, complete genome	6356-6387	7	0.781
CP026979_7	7.27\|3957764\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957764-3957795	32	NZ_CP047175	Rathayibacter sp. VKM Ac-2760 plasmid unnamed2, complete sequence	40506-40537	7	0.781
CP026979_7	7.29\|3957884\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957884-3957915	32	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	1280397-1280428	7	0.781
CP026979_7	7.29\|3957884\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957884-3957915	32	NZ_CP040763	Paracoccus sp. 2251 plasmid unnamed4, complete sequence	109056-109087	7	0.781
CP026979_2	2.1\|440734\|32\|CP026979\|CRISPRCasFinder,CRT	440734-440765	32	CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	283401-283432	8	0.75
CP026979_2	2.6\|441039\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441039-441070	32	MN855696	Bacteriophage sp. isolate 342, complete genome	5002-5033	8	0.75
CP026979_2	2.6\|441039\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441039-441070	32	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	141880-141911	8	0.75
CP026979_2	2.6\|441039\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441039-441070	32	NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	435005-435036	8	0.75
CP026979_2	2.10\|441283\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441283-441314	32	NZ_CP035422	Leisingera sp. NJS204 plasmid unnamed5, complete sequence	113731-113762	8	0.75
CP026979_2	2.10\|441283\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441283-441314	32	NZ_CP021042	Phaeobacter gallaeciensis strain P129 plasmid pP129_b, complete sequence	56732-56763	8	0.75
CP026979_2	2.10\|441283\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441283-441314	32	NZ_CP038240	Leisingera sp. NJS201 plasmid unnamed6, complete sequence	108446-108477	8	0.75
CP026979_2	2.10\|441283\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441283-441314	32	NZ_CP054602	Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed3, complete sequence	66318-66349	8	0.75
CP026979_2	2.10\|441283\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441283-441314	32	NZ_CP030100	Roseovarius sp. AK1035 plasmid unnamed, complete sequence	111250-111281	8	0.75
CP026979_2	2.10\|441283\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441283-441314	32	NZ_CP010658	Phaeobacter piscinae strain P71 plasmid pP71_b, complete sequence	84883-84914	8	0.75
CP026979_2	2.10\|441283\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441283-441314	32	NZ_CP010601	Phaeobacter inhibens strain P83 plasmid pP83_b, complete sequence	60197-60228	8	0.75
CP026979_2	2.10\|441283\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441283-441314	32	NZ_CP010770	Phaeobacter piscinae strain P13 plasmid pP13_c, complete sequence	60228-60259	8	0.75
CP026979_2	2.10\|441283\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441283-441314	32	NZ_CP010707	Phaeobacter inhibens strain P66 plasmid pP66_b, complete sequence	60197-60228	8	0.75
CP026979_2	2.10\|441283\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441283-441314	32	NZ_CP020475	Roseovarius mucosus strain SMR3 plasmid pSMR3-1, complete sequence	165546-165577	8	0.75
CP026979_2	2.10\|441283\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441283-441314	32	AP008986	Xanthomonas oryzae phage OP2 DNA, complete genome	44651-44682	8	0.75
CP026979_2	2.12\|441405\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441405-441436	32	NZ_CP013635	Rhizobium sp. N324 plasmid pRspN324e, complete sequence	239715-239746	8	0.75
CP026979_3	3.1\|443547\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	443547-443578	32	NC_019898	Thermobacillus composti KWC4 plasmid pTHECO01, complete sequence	103805-103836	8	0.75
CP026979_5	5.1\|1276685\|31\|CP026979\|CRISPRCasFinder	1276685-1276715	31	NZ_KU882685	Staphylococcus lugdunensis strain Tlug20G-4 plasmid pT20G, complete sequence	21496-21526	8	0.742
CP026979_5	5.1\|1276685\|31\|CP026979\|CRISPRCasFinder	1276685-1276715	31	NZ_CP046302	Staphylococcus hominis strain FDAARGOS_747 plasmid unnamed2, complete sequence	28530-28560	8	0.742
CP026979_5	5.1\|1276685\|31\|CP026979\|CRISPRCasFinder	1276685-1276715	31	NZ_MN602039	Staphylococcus capitis strain APC2923 plasmid pJOS_01, complete sequence	34933-34963	8	0.742
CP026979_5	5.1\|1276685\|31\|CP026979\|CRISPRCasFinder	1276685-1276715	31	NC_015432	Staphylococcus saprophyticus subsp. saprophyticus MS1146 plasmid pSSAP1, complete sequence	112-142	8	0.742
CP026979_5	5.1\|1276685\|31\|CP026979\|CRISPRCasFinder	1276685-1276715	31	NZ_KU882686	Staphylococcus lugdunensis strain Tlug63N-4 plasmid pT63N, complete sequence	37553-37583	8	0.742
CP026979_7	7.2\|3956261\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956261-3956292	32	MN340231	Escherichia phage phiv205-1, complete genome	36444-36475	8	0.75
CP026979_7	7.2\|3956261\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956261-3956292	32	MT813197	Escherichia phage vB_EcoP_Kapi1, complete genome	8499-8530	8	0.75
CP026979_7	7.2\|3956261\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956261-3956292	32	NC_042057	Enterobacteria phage DE3, complete genome	12440-12471	8	0.75
CP026979_7	7.2\|3956261\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956261-3956292	32	NC_019711	Enterobacteria phage HK629, complete genome	35984-36015	8	0.75
CP026979_7	7.2\|3956261\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956261-3956292	32	MF374379	Escherichia phage DN1, complete genome	33919-33950	8	0.75
CP026979_7	7.2\|3956261\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956261-3956292	32	NC_019708	Enterobacteria phage mEp235, complete genome	27674-27705	8	0.75
CP026979_7	7.2\|3956261\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956261-3956292	32	AJ237660	Bacteriophage 21 cro, cII, O, P, Q, ren and ninABEFGH genes	104-135	8	0.75
CP026979_7	7.10\|3956742\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956742-3956773	32	NC_025147	Escherichia coli plasmid pV404, complete sequence	48703-48734	8	0.75
CP026979_7	7.10\|3956742\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956742-3956773	32	NZ_CP010864	Marinovum algicola DG 898 plasmid pMaD9, complete sequence	94601-94632	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	LR027383	Escherichia virus vB_Eco_mar005P1 strain vB_Eco_mar007P3 genome assembly, chromosome: 1	62035-62066	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MN864145	Escherichia phage F2, complete genome	125780-125811	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MN850579	Escherichia phage mogra, complete genome	68534-68565	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	KT184309	Enterobacteria phage ATK47, complete genome	67687-67718	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	KM407600	Shigella phage Shf125875, complete genome	106055-106086	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	LR027391	Escherichia virus vB_Eco_mar005P1 strain vB_Eco_mar009P5 genome assembly, chromosome: 1	84860-84891	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MK047718	Escherichia phage p000y, complete genome	156329-156360	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	KT184310	Enterobacteria phage ATK48, complete genome	165921-165952	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	LR027386	Escherichia virus vB_Eco_mar005P1 strain vB_Eco_mar008P4 genome assembly, chromosome: 1	44816-44847	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MK962754	Shigella phage JK36, complete genome	107165-107196	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	LR027390	Escherichia virus vB_Eco_mar005P1 genome assembly, chromosome: 1	39149-39180	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	LR027387	Escherichia virus vB_Eco_mar005P1 strain vB_Eco_mar006P2 genome assembly, chromosome: 1	140044-140075	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MK373775	Escherichia phage vB_EcoM_WFK, complete genome	100894-100925	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	NC_024794	Escherichia phage vB_EcoM_PhAPEC2, complete genome	105581-105612	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MK639187	Shigella phage SSE1, complete genome	6779-6810	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MK962757	Shigella phage JK45, complete genome	107242-107273	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MN850651	Escherichia phage moskry, complete genome	116338-116369	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MK962756	Shigella phage JK42, complete genome	106715-106746	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MK524178	Escherichia phage PHB12, complete genome	166150-166181	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	NC_041990	Escherichia phage ST0, complete genome	124818-124849	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MG589383	Shigella phage phi25-307, complete genome	85901-85932	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	KR422352	Escherichia phage APCEc01, complete genome	79166-79197	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MT446390	UNVERIFIED: Escherichia virus TH12, complete genome	65195-65226	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MK327933	Escherichia phage vB_EcoM_G2285, complete genome	104456-104487	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MH243438	Escherichia phage vB_EcoM_NBG1, complete genome	106071-106102	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MN850622	Escherichia phage mobillu, complete genome	22038-22069	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	KX130865	Shigella phage SHSML-52-1, complete genome	98861-98892	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MN850590	Escherichia phage moha, complete genome	4745-4776	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MT782071	Escherichia phage JN02, complete genome	106626-106657	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MK327943	Escherichia phage vB_EcoM_G53, complete genome	105002-105033	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MK373782	Escherichia phage vB_EcoM_KAW3E185, complete genome	105024-105055	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	NC_024124	Escherichia phage vB_EcoM_JS09, complete genome	64458-64489	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MK373774	Escherichia phage vB_EcoM_WFL6982, complete genome	100894-100925	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MK327934	Escherichia phage vB_EcoM_G2469, complete genome	106592-106623	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	AY303349	Enterobacteria phage RB69, complete genome	106618-106649	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MK047717	Escherichia phage p000v, complete genome	44143-44174	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MH359124	Escherichia phage SF, complete genome	15614-15645	8	0.75
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	NC_041920	UNVERIFIED: Escherichia phage HP3, complete genome	116257-116288	8	0.75
CP026979_7	7.14\|3956982\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956982-3957013	32	NZ_CP051681	Cohnella sp. MFER-1 plasmid unnamed1	153228-153259	8	0.75
CP026979_7	7.15\|3957042\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957042-3957073	32	MN545971	Citrobacter virus HCF1, complete genome	31610-31641	8	0.75
CP026979_7	7.16\|3957102\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957102-3957133	32	NC_014838	Pantoea sp. At-9b plasmid pPAT9B01, complete sequence	726431-726462	8	0.75
CP026979_7	7.24\|3957584\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957584-3957615	32	NZ_CP039192	Piscirickettsia salmonis strain Psal-160 plasmid unnamed2, complete sequence	14227-14258	8	0.75
CP026979_7	7.24\|3957584\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957584-3957615	32	NZ_CP013764	Piscirickettsia salmonis strain PM21567A plasmid p2PS2, complete sequence	24150-24181	8	0.75
CP026979_7	7.24\|3957584\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957584-3957615	32	NZ_CP013758	Piscirickettsia salmonis strain AY6492A plasmid p1PS1, complete sequence	78124-78155	8	0.75
CP026979_7	7.24\|3957584\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957584-3957615	32	NZ_CP039183	Piscirickettsia salmonis strain Psal-158 plasmid unnamed2, complete sequence	4557-4588	8	0.75
CP026979_7	7.24\|3957584\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957584-3957615	32	NZ_CP012416	Piscirickettsia salmonis strain PM15972A1 plasmid pPSA1-3, complete sequence	48404-48435	8	0.75
CP026979_7	7.24\|3957584\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957584-3957615	32	NZ_CP039067	Piscirickettsia salmonis strain Psal-107 plasmid unnamed2, complete sequence	4557-4588	8	0.75
CP026979_7	7.27\|3957764\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957764-3957795	32	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	454831-454862	8	0.75
CP026979_7	7.30\|3957944\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957944-3957975	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1001993-1002024	8	0.75
CP026979_7	7.30\|3957944\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957944-3957975	32	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	1065556-1065587	8	0.75
CP026979_7	7.35\|3958245\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3958245-3958276	32	KM236237	Citrobacter phage Miller, complete genome	84653-84684	8	0.75
CP026979_7	7.35\|3958245\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3958245-3958276	32	NC_031057	Citrobacter phage vB_CfrM_CfP1, complete genome	86890-86921	8	0.75
CP026979_7	7.35\|3958245\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3958245-3958276	32	NC_029013	Citrobacter phage IME-CF2, complete genome	34661-34692	8	0.75
CP026979_7	7.35\|3958245\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3958245-3958276	32	KT381880	Citrobacter phage Margaery, complete genome	84031-84062	8	0.75
CP026979_7	7.41\|3958605\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3958605-3958636	32	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	1096906-1096937	8	0.75
CP026979_7	7.45\|3958845\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3958845-3958876	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1633555-1633586	8	0.75
CP026979_7	7.45\|3958845\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3958845-3958876	32	NZ_CP040720	Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence	124825-124856	8	0.75
CP026979_7	7.48\|3959025\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3959025-3959056	32	NC_027640	Microviridae Fen418_41, complete genome	2666-2697	8	0.75
CP026979_2	2.11\|441344\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441344-441375	32	MK801725	Gordonia phage Yago84, complete genome	13853-13884	9	0.719
CP026979_2	2.13\|441466\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441466-441497	32	MH121069	Pseudomonas phage vB_PaeM_PA5oct, complete genome	146436-146467	9	0.719
CP026979_2	2.15\|441588\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441588-441619	32	NC_048639	Pseudomonas phage ZC08, complete genome	68535-68566	9	0.719
CP026979_2	2.15\|441588\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441588-441619	32	NC_048638	Pseudomonas phage ZC03, complete genome	67605-67636	9	0.719
CP026979_5	5.1\|1276685\|31\|CP026979\|CRISPRCasFinder	1276685-1276715	31	NZ_CP046029	Staphylococcus chromogenes strain 1401 plasmid unnamed1	35276-35306	9	0.71
CP026979_6	6.2\|3938765\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3938765-3938796	32	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	802411-802442	9	0.719
CP026979_6	6.2\|3938765\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3938765-3938796	32	NZ_CP018230	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence	173870-173901	9	0.719
CP026979_6	6.2\|3938765\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3938765-3938796	32	NZ_CP026330	Acidithiobacillus caldus strain MTH-04 plasmid p2, complete sequence	25546-25577	9	0.719
CP026979_6	6.2\|3938765\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3938765-3938796	32	NC_010600	Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence	530-561	9	0.719
CP026979_7	7.1\|3956201\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956201-3956232	32	NZ_CP046254	Sphingobium sp. CAP-1 plasmid p1, complete sequence	93824-93855	9	0.719
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MK373778	Escherichia phage vB_EcoM_WFbE185, complete genome	106114-106145	9	0.719
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	KP869111	Escherichia coli O157 typing phage 13, partial genome	96419-96450	9	0.719
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MK373784	Escherichia phage vB_EcoM_MM02, complete genome	106972-107003	9	0.719
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	MH992122	UNVERIFIED: Escherichia phage OLB35, complete genome	106143-106174	9	0.719
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	KM389386	UNVERIFIED: Escherichia phage CEV1 clone contig00001 genomic sequence	21296-21327	9	0.719
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	KP869104	Escherichia coli O157 typing phage 6, complete genome	115267-115298	9	0.719
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	KY703222	Escherichia phage phiC120, complete genome	26571-26602	9	0.719
CP026979_7	7.12\|3956862\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956862-3956893	32	NC_041863	Escherichia coli O157 typing phage 3, complete genome	45263-45294	9	0.719
CP026979_7	7.25\|3957644\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957644-3957675	32	NZ_CP050104	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence	20570-20601	9	0.719
CP026979_7	7.25\|3957644\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957644-3957675	32	NZ_CP020952	Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence	502442-502473	9	0.719
CP026979_7	7.25\|3957644\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957644-3957675	32	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	1001117-1001148	9	0.719
CP026979_7	7.25\|3957644\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957644-3957675	32	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	920742-920773	9	0.719
CP026979_7	7.25\|3957644\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957644-3957675	32	NZ_CP050109	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence	20570-20601	9	0.719
CP026979_7	7.25\|3957644\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957644-3957675	32	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	583489-583520	9	0.719
CP026979_7	7.25\|3957644\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957644-3957675	32	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	424654-424685	9	0.719
CP026979_7	7.25\|3957644\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957644-3957675	32	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	20568-20599	9	0.719
CP026979_7	7.30\|3957944\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957944-3957975	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1042476-1042507	9	0.719
CP026979_7	7.35\|3958245\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3958245-3958276	32	MG592671	Vibrio phage 2.275.O._10N.286.54.E11, partial genome	85744-85775	9	0.719
CP026979_7	7.43\|3958725\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3958725-3958756	32	NZ_CP024423	Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence	312913-312944	9	0.719
CP026979_7	7.45\|3958845\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3958845-3958876	32	NZ_CP021127	Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence	137968-137999	9	0.719
CP026979_7	7.48\|3959025\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3959025-3959056	32	NC_023007	Bacillus phage vB_BanS-Tsamsa, complete genome	87228-87259	9	0.719
CP026979_2	2.5\|440978\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	440978-441009	32	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	199083-199114	10	0.688
CP026979_2	2.7\|441100\|32\|CP026979\|CRISPRCasFinder,CRT,PILER-CR	441100-441131	32	MN693407	Marine virus AFVG_25M242, complete genome	781-812	10	0.688
CP026979_7	7.10\|3956742\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956742-3956773	32	NZ_AP018173	Calothrix sp. NIES-2098 plasmid plasmid1 DNA, complete genome	154147-154178	10	0.688
CP026979_7	7.25\|3957644\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957644-3957675	32	NZ_CP013635	Rhizobium sp. N324 plasmid pRspN324e, complete sequence	483390-483421	10	0.688
CP026979_7	7.25\|3957644\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957644-3957675	32	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	332873-332904	10	0.688
CP026979_7	7.27\|3957764\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957764-3957795	32	NZ_CP033072	Streptomyces sp. Z022 plasmid unnamed1	28899-28930	10	0.688
CP026979_7	7.27\|3957764\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957764-3957795	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	677174-677205	10	0.688
CP026979_7	7.28\|3957824\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3957824-3957855	32	KX669658	Ochrobactrum phage POA1180, complete genome	1635-1666	10	0.688
CP026979_7	7.35\|3958245\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3958245-3958276	32	NC_005355	Lactobacillus prophage Lj965, complete genome	37457-37488	10	0.688
CP026979_7	7.35\|3958245\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3958245-3958276	32	AY459535	Lactobacillus johnsonii prophage Lj965, complete genome	37457-37488	10	0.688
CP026979_7	7.45\|3958845\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3958845-3958876	32	NZ_CP032520	Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence	291125-291156	10	0.688
CP026979_7	7.45\|3958845\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3958845-3958876	32	NZ_CP017242	Rhizobium etli 8C-3 plasmid pRsp8C3a, complete sequence	382434-382465	10	0.688
CP026979_6	6.2\|3938765\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3938765-3938796	32	NZ_CP049906	Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence	311253-311284	11	0.656
CP026979_7	7.1\|3956201\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956201-3956232	32	CP053919	Serratia marcescens strain LY1 plasmid unnamed1, complete sequence	42077-42108	11	0.656
CP026979_7	7.1\|3956201\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956201-3956232	32	NZ_AP013065	Serratia marcescens SM39 plasmid pSMC2, complete sequence	41137-41168	11	0.656
CP026979_7	7.45\|3958845\|32\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3958845-3958876	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3130041-3130072	11	0.656

1. spacer 7.8|3956622|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM670336 (Salmonella enterica subsp. enterica serovar Senftenberg strain SRC119 plasmid pSRC119-A/C, complete sequence) position: , mismatch: 1, identity: 0.969

agccacgcatccagatacatcgggcagtcagg	CRISPR spacer
agccacgcatccagatacatcgggcaatcagg	Protospacer
**************************.*****

2. spacer 7.8|3956622|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014764 (Klebsiella pneumoniae strain KPNIH39 plasmid pKPN-704, complete sequence) position: , mismatch: 1, identity: 0.969

agccacgcatccagatacatcgggcagtcagg	CRISPR spacer
agccacgcatccagatacatcgggcaatcagg	Protospacer
**************************.*****

3. spacer 7.8|3956622|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020602 (Pseudomonas aeruginosa strain E6130952 plasmid pJHX613, complete sequence) position: , mismatch: 1, identity: 0.969

agccacgcatccagatacatcgggcagtcagg	CRISPR spacer
agccacgcatccagatacatcgggcaatcagg	Protospacer
**************************.*****

4. spacer 7.21|3957403|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_019522 (Pectobacterium phage ZF40, complete genome) position: , mismatch: 1, identity: 0.969

gattgacatacgcacaggctgtttactggatt	CRISPR spacer
gattgacgtacgcacaggctgtttactggatt	Protospacer
*******.************************

5. spacer 7.8|3956622|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015073 (Escherichia coli strain Ecol_743 plasmid pEC743_4, complete sequence) position: , mismatch: 2, identity: 0.938

agccacgcatccagatacatcgggcagtcagg	CRISPR spacer
agccacgcatccagatacatcgggcaatcggg	Protospacer
**************************.**.**

6. spacer 7.8|3956622|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045255 (Proteus mirabilis strain L90-1 plasmid pL902, complete sequence) position: , mismatch: 2, identity: 0.938

agccacgcatccagatacatcgggcagtcagg	CRISPR spacer
agccacgcatccagatacatcgggcaatcggg	Protospacer
**************************.**.**

7. spacer 7.8|3956622|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to AP018710 (Uncultured bacterium plasmid pSN1216-29 DNA, complete sequence) position: , mismatch: 2, identity: 0.938

agccacgcatccagatacatcgggcagtcagg	CRISPR spacer
agccacgcatccagatacatcgggcaatcggg	Protospacer
**************************.**.**

8. spacer 7.8|3956622|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046349 (Citrobacter portucalensis strain FDAARGOS_738 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

agccacgcatccagatacatcgggcagtcagg	CRISPR spacer
agccacgcatccagatacatcgggcaatcggg	Protospacer
**************************.**.**

9. spacer 7.8|3956622|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021004 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6166 plasmid pE, complete sequence) position: , mismatch: 2, identity: 0.938

agccacgcatccagatacatcgggcagtcagg	CRISPR spacer
agccacgcatccagatacatcgggcaatcggg	Protospacer
**************************.**.**

10. spacer 7.46|3958905|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021004 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6166 plasmid pE, complete sequence) position: , mismatch: 2, identity: 0.938

caaatcggcgttcgactcccacgcatcggttt	CRISPR spacer
caagtcggcgttcgactcccacgcatcggctt	Protospacer
***.*************************.**

11. spacer 7.4|3956381|33|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to AJ560763 (Bacteriophage Aaphi23 complete genome) position: , mismatch: 3, identity: 0.909

ctgatgaaagccgagaaagccgagcgaaacgat	CRISPR spacer
ctgatgaaagccgaaaaagccgagcgtaacgac	Protospacer
**************.*********** *****.

12. spacer 7.4|3956381|33|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_004827 (Bacteriophage Aaphi23, complete genome) position: , mismatch: 3, identity: 0.909

ctgatgaaagccgagaaagccgagcgaaacgat	CRISPR spacer
ctgatgaaagccgaaaaagccgagcgtaacgac	Protospacer
**************.*********** *****.

13. spacer 7.25|3957644|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045255 (Proteus mirabilis strain L90-1 plasmid pL902, complete sequence) position: , mismatch: 3, identity: 0.906

tacgcgatgacgctgcccgatagtgccgcgtt	CRISPR spacer
tatgcgatgacgctgcccgacagtgccgcgta	Protospacer
**.*****************.**********

14. spacer 7.46|3958905|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046349 (Citrobacter portucalensis strain FDAARGOS_738 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.906

caaatcggcgttcgactcccacgcatcggttt	CRISPR spacer
caagtcggcgttcgactcccacgcatcggact	Protospacer
***.************************* .*

15. spacer 7.28|3957824|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 5, identity: 0.844

gaagtcacg--ctggagtttgacgatctgcccga	CRISPR spacer
--aatcagggcctggcgtttgacgatctgcccga	Protospacer
  *.*** *  **** ******************

16. spacer 6.2|3938765|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018777 (Staphylococcus condimenti strain StO 2014-01 plasmid pStO2014-01, complete sequence) position: , mismatch: 6, identity: 0.812

tcaactctgcccgttgctgctgt--cggcgggta	CRISPR spacer
tcaactgtgcccgttgctgttgttccgtctgg--	Protospacer
****** ************.***  ** * **

17. spacer 6.3|3938825|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009861 (Escherichia coli strain ECONIH1 plasmid pECO-b75, complete sequence) position: , mismatch: 6, identity: 0.812

atctacgaagctgattattggtatgggccgcg	CRISPR spacer
attcttgaaggtgattattggtatgggcctcg	Protospacer
**.. .**** ****************** **

18. spacer 7.27|3957764|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to CP036421 (Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gctgcgacgcctcggcagccgacacc-cgcatc	CRISPR spacer
gctgggacgcctcggccgccgaccctgcggat-	Protospacer
**** *********** ****** *. ** **

19. spacer 2.6|441039|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to NC_019522 (Pectobacterium phage ZF40, complete genome) position: , mismatch: 7, identity: 0.781

-gatgagcaaatggaaacgatcaactataacgg	CRISPR spacer
caattaat-aatggaaattatcaactataacgg	Protospacer
 .** *.. ********. **************

20. spacer 2.15|441588|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041418 (Escherichia coli strain STEC711 plasmid pSTEC711_2, complete sequence) position: , mismatch: 7, identity: 0.781

ttccaaccctttcagcaagctctacctgagta--	CRISPR spacer
ttcccagcctttcagcaagctctac--aaatcgc	Protospacer
**** * ******************  .*.*

21. spacer 6.1|3938705|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020900 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence) position: , mismatch: 7, identity: 0.781

aacatcgccacggcgaaaagtg----tgttcatggc	CRISPR spacer
aacatcgccacggcgcgaagtgttcctgtcca----	Protospacer
*************** .*****    ***.**

22. spacer 7.4|3956381|33|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to KU310944 (Pseudomonas phage YMC11/06/C171_PPU_BP, complete genome) position: , mismatch: 7, identity: 0.788

ctgatgaaagccgagaaagccgagcgaaacgat	CRISPR spacer
ctcaagaaagccgagaaagccgagcaacagggc	Protospacer
** * ********************.* * *..

23. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MT446423 (UNVERIFIED: Escherichia virus TH58, complete genome) position: , mismatch: 7, identity: 0.781

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacagcatctacgccgacggttaattta	Protospacer
* .   **.***************** *****

24. spacer 7.27|3957764|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047175 (Rathayibacter sp. VKM Ac-2760 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

gctgcgacgcctcggcagccgacac----ccgcatc	CRISPR spacer
gctgcgaggccgcggcagccgacgcgacgccg----	Protospacer
******* *** ***********.*    ***

25. spacer 7.29|3957884|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 7, identity: 0.781

agcttgtgcgcgatggcatagcgggcaatctc	CRISPR spacer
agcttctgctcgatggcatagcgggcctggcc	Protospacer
***** *** ****************    .*

26. spacer 7.29|3957884|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040763 (Paracoccus sp. 2251 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

----agcttgtgcgcgatggcatagcgggcaatctc	CRISPR spacer
tcgaagc----gcgcgatggcatagcggccgatcac	Protospacer
    ***    ***************** *.*** *

27. spacer 2.1|440734|32|CP026979|CRISPRCasFinder,CRT matches to CP036360 (Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence) position: , mismatch: 8, identity: 0.75

---ccgattcaagggcagatgcgcggtctattgtt	CRISPR spacer
accccgg---gggggcagatgcgtggtctattttt	Protospacer
   ***.   ..***********.******** **

28. spacer 2.6|441039|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to MN855696 (Bacteriophage sp. isolate 342, complete genome) position: , mismatch: 8, identity: 0.75

gatgagcaaatggaaacgatcaactataacgg	CRISPR spacer
agtcttaaaatggaaacgattaactataaagg	Protospacer
..*    *************.******** **

29. spacer 2.6|441039|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 8, identity: 0.75

gatgagcaaatggaaacgatcaactataacgg	CRISPR spacer
acggaggcaatggaaacgatcaactacacccg	Protospacer
.  ***  ******************.* * *

30. spacer 2.6|441039|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 8, identity: 0.75

gatgagcaaatggaaacgatcaactataacgg	CRISPR spacer
acggaggcaatggaaacgatcaactacacccg	Protospacer
.  ***  ******************.* * *

31. spacer 2.10|441283|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035422 (Leisingera sp. NJS204 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

gattgcgtcagcgccgtcagaaaatgcctttg	CRISPR spacer
aatggcgtcagcgcggtcagaaaattgttgag	Protospacer
.** ********** **********  .*  *

32. spacer 2.10|441283|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021042 (Phaeobacter gallaeciensis strain P129 plasmid pP129_b, complete sequence) position: , mismatch: 8, identity: 0.75

gattgcgtcagcgccgtcagaaaatgcctttg	CRISPR spacer
aatggcgtcagcgcggtcagaaaattgttgag	Protospacer
.** ********** **********  .*  *

33. spacer 2.10|441283|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038240 (Leisingera sp. NJS201 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

gattgcgtcagcgccgtcagaaaatgcctttg	CRISPR spacer
aatggcgtcagcgcggtcagaaaattgttgag	Protospacer
.** ********** **********  .*  *

34. spacer 2.10|441283|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054602 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gattgcgtcagcgccgtcagaaaatgcctttg	CRISPR spacer
aatggcgtcagcgcggtcagaaaattgttgag	Protospacer
.** ********** **********  .*  *

35. spacer 2.10|441283|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030100 (Roseovarius sp. AK1035 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gattgcgtcagcgccgtcagaaaatgcctttg	CRISPR spacer
aatggcgtcagcgcggtcagaaaattgttgag	Protospacer
.** ********** **********  .*  *

36. spacer 2.10|441283|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010658 (Phaeobacter piscinae strain P71 plasmid pP71_b, complete sequence) position: , mismatch: 8, identity: 0.75

gattgcgtcagcgccgtcagaaaatgcctttg	CRISPR spacer
aatggcgtcagcgcggtcagaaaattgttgag	Protospacer
.** ********** **********  .*  *

37. spacer 2.10|441283|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010601 (Phaeobacter inhibens strain P83 plasmid pP83_b, complete sequence) position: , mismatch: 8, identity: 0.75

gattgcgtcagcgccgtcagaaaatgcctttg	CRISPR spacer
aatggcgtcagcgcggtcagaaaattgttgag	Protospacer
.** ********** **********  .*  *

38. spacer 2.10|441283|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010770 (Phaeobacter piscinae strain P13 plasmid pP13_c, complete sequence) position: , mismatch: 8, identity: 0.75

gattgcgtcagcgccgtcagaaaatgcctttg	CRISPR spacer
aatggcgtcagcgcggtcagaaaattgttgag	Protospacer
.** ********** **********  .*  *

39. spacer 2.10|441283|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010707 (Phaeobacter inhibens strain P66 plasmid pP66_b, complete sequence) position: , mismatch: 8, identity: 0.75

gattgcgtcagcgccgtcagaaaatgcctttg	CRISPR spacer
aatggcgtcagcgcggtcagaaaattgttgag	Protospacer
.** ********** **********  .*  *

40. spacer 2.10|441283|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020475 (Roseovarius mucosus strain SMR3 plasmid pSMR3-1, complete sequence) position: , mismatch: 8, identity: 0.75

gattgcgtcagcgccgtcagaaaatgcctttg	CRISPR spacer
aatggcgtcagcgcggtcagaaaattgttgag	Protospacer
.** ********** **********  .*  *

41. spacer 2.10|441283|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to AP008986 (Xanthomonas oryzae phage OP2 DNA, complete genome) position: , mismatch: 8, identity: 0.75

gattgcgtcagcgccgtcagaaaatgcctttg	CRISPR spacer
gtcggcgtcagctccgtcagaaactgcatcag	Protospacer
* . ******** ********** *** *. *

42. spacer 2.12|441405|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013635 (Rhizobium sp. N324 plasmid pRspN324e, complete sequence) position: , mismatch: 8, identity: 0.75

ttatttagtggaattcggcctgacgccagcgg	CRISPR spacer
gtacgccgaggatttcggcctgacggcagcgg	Protospacer
 **. . * *** ************ ******

43. spacer 3.1|443547|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_019898 (Thermobacillus composti KWC4 plasmid pTHECO01, complete sequence) position: , mismatch: 8, identity: 0.75

catggataagagcgacgtaggaacgcaatttg	CRISPR spacer
catggatgagagcgccgtaggaacaggtattt	Protospacer
*******.****** *********. .  **

44. spacer 5.1|1276685|31|CP026979|CRISPRCasFinder matches to NZ_KU882685 (Staphylococcus lugdunensis strain Tlug20G-4 plasmid pT20G, complete sequence) position: , mismatch: 8, identity: 0.742

gaaaaacgttccccacgtttttttatggcgt	CRISPR spacer
ataaaacgttccccacgtttatttatctaca	Protospacer
. ****************** *****

45. spacer 5.1|1276685|31|CP026979|CRISPRCasFinder matches to NZ_CP046302 (Staphylococcus hominis strain FDAARGOS_747 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.742

gaaaaacgttccccacgtttttttatggcgt	CRISPR spacer
ataaaacgttccccacgtttatttatctaca	Protospacer
. ****************** *****

46. spacer 5.1|1276685|31|CP026979|CRISPRCasFinder matches to NZ_MN602039 (Staphylococcus capitis strain APC2923 plasmid pJOS_01, complete sequence) position: , mismatch: 8, identity: 0.742

gaaaaacgttccccacgtttttttatggcgt	CRISPR spacer
ataaaacgttccccacgtttatttatctaca	Protospacer
. ****************** *****

47. spacer 5.1|1276685|31|CP026979|CRISPRCasFinder matches to NC_015432 (Staphylococcus saprophyticus subsp. saprophyticus MS1146 plasmid pSSAP1, complete sequence) position: , mismatch: 8, identity: 0.742

gaaaaacgttccccacgtttttttatggcgt	CRISPR spacer
ataaaacgttccccacgtttatttatctaca	Protospacer
. ****************** *****

48. spacer 5.1|1276685|31|CP026979|CRISPRCasFinder matches to NZ_KU882686 (Staphylococcus lugdunensis strain Tlug63N-4 plasmid pT63N, complete sequence) position: , mismatch: 8, identity: 0.742

gaaaaacgttccccacgtttttttatggcgt	CRISPR spacer
ataaaacgttccccacgtttatttatctaca	Protospacer
. ****************** *****

49. spacer 7.2|3956261|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MN340231 (Escherichia phage phiv205-1, complete genome) position: , mismatch: 8, identity: 0.75

cttccgaagtgggcaatgacatcttgctttcg	CRISPR spacer
gttccgaagtggtcaataacatcttttttgta	Protospacer
 *********** ****.******* .** ..

50. spacer 7.2|3956261|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MT813197 (Escherichia phage vB_EcoP_Kapi1, complete genome) position: , mismatch: 8, identity: 0.75

cttccgaagtgggcaatgacatcttgctttcg	CRISPR spacer
gttccgaagtggtcaataacatcttttttgta	Protospacer
 *********** ****.******* .** ..

51. spacer 7.2|3956261|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_042057 (Enterobacteria phage DE3, complete genome) position: , mismatch: 8, identity: 0.75

cttccgaagtgggcaatgacatcttgctttcg	CRISPR spacer
gttccgaagtggtcaataacatcttttttgta	Protospacer
 *********** ****.******* .** ..

52. spacer 7.2|3956261|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_019711 (Enterobacteria phage HK629, complete genome) position: , mismatch: 8, identity: 0.75

cttccgaagtgggcaatgacatcttgctttcg	CRISPR spacer
gttccgaagtggtcaataacatcttttttgta	Protospacer
 *********** ****.******* .** ..

53. spacer 7.2|3956261|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MF374379 (Escherichia phage DN1, complete genome) position: , mismatch: 8, identity: 0.75

cttccgaagtgggcaatgacatcttgctttcg	CRISPR spacer
gttccgaagtggtcaataacatcttttttgta	Protospacer
 *********** ****.******* .** ..

54. spacer 7.2|3956261|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_019708 (Enterobacteria phage mEp235, complete genome) position: , mismatch: 8, identity: 0.75

cttccgaagtgggcaatgacatcttgctttcg	CRISPR spacer
gttccgaagtggtcaataacatcttttttgta	Protospacer
 *********** ****.******* .** ..

55. spacer 7.2|3956261|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to AJ237660 (Bacteriophage 21 cro, cII, O, P, Q, ren and ninABEFGH genes) position: , mismatch: 8, identity: 0.75

cttccgaagtgggcaatgacatcttgctttcg	CRISPR spacer
gttccgaagtggtcaataacatcttttttgta	Protospacer
 *********** ****.******* .** ..

56. spacer 7.10|3956742|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_025147 (Escherichia coli plasmid pV404, complete sequence) position: , mismatch: 8, identity: 0.75

aattccactggaaaaactgacagcatttacaa	CRISPR spacer
tatagcactggaaaaactggcagaatttaact	Protospacer
 **  **************.*** *****

57. spacer 7.10|3956742|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010864 (Marinovum algicola DG 898 plasmid pMaD9, complete sequence) position: , mismatch: 8, identity: 0.75

aattccactggaaaaactgacagcatttacaa	CRISPR spacer
tcattcactggaaaaactgactgcctttgcca	Protospacer
   *.**************** ** ***.* *

58. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to LR027383 (Escherichia virus vB_Eco_mar005P1 strain vB_Eco_mar007P3 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

59. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MN864145 (Escherichia phage F2, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

60. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MN850579 (Escherichia phage mogra, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

61. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to KT184309 (Enterobacteria phage ATK47, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

62. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to KM407600 (Shigella phage Shf125875, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

63. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to LR027391 (Escherichia virus vB_Eco_mar005P1 strain vB_Eco_mar009P5 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

64. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MK047718 (Escherichia phage p000y, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

65. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to KT184310 (Enterobacteria phage ATK48, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

66. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to LR027386 (Escherichia virus vB_Eco_mar005P1 strain vB_Eco_mar008P4 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

67. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MK962754 (Shigella phage JK36, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

68. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to LR027390 (Escherichia virus vB_Eco_mar005P1 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

69. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to LR027387 (Escherichia virus vB_Eco_mar005P1 strain vB_Eco_mar006P2 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

70. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MK373775 (Escherichia phage vB_EcoM_WFK, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

71. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_024794 (Escherichia phage vB_EcoM_PhAPEC2, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

72. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MK639187 (Shigella phage SSE1, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

73. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MK962757 (Shigella phage JK45, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

74. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MN850651 (Escherichia phage moskry, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

75. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MK962756 (Shigella phage JK42, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

76. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MK524178 (Escherichia phage PHB12, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

77. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_041990 (Escherichia phage ST0, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

78. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MG589383 (Shigella phage phi25-307, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

79. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to KR422352 (Escherichia phage APCEc01, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

80. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MT446390 (UNVERIFIED: Escherichia virus TH12, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

81. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MK327933 (Escherichia phage vB_EcoM_G2285, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

82. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MH243438 (Escherichia phage vB_EcoM_NBG1, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

83. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MN850622 (Escherichia phage mobillu, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

84. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to KX130865 (Shigella phage SHSML-52-1, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

85. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MN850590 (Escherichia phage moha, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

86. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MT782071 (Escherichia phage JN02, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

87. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MK327943 (Escherichia phage vB_EcoM_G53, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

88. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MK373782 (Escherichia phage vB_EcoM_KAW3E185, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

89. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_024124 (Escherichia phage vB_EcoM_JS09, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

90. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MK373774 (Escherichia phage vB_EcoM_WFL6982, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

91. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MK327934 (Escherichia phage vB_EcoM_G2469, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

92. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to AY303349 (Enterobacteria phage RB69, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

93. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MK047717 (Escherichia phage p000v, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

94. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MH359124 (Escherichia phage SF, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

95. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_041920 (UNVERIFIED: Escherichia phage HP3, complete genome) position: , mismatch: 8, identity: 0.75

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacgccgacggttaattta	Protospacer
* .   *..***************** *****

96. spacer 7.14|3956982|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051681 (Cohnella sp. MFER-1 plasmid unnamed1) position: , mismatch: 8, identity: 0.75

cgtttgcggattttttcattgcatcgctgaca	CRISPR spacer
gggatatggattttttcattacatcgctcacc	Protospacer
 *  *..*************.******* **

97. spacer 7.15|3957042|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MN545971 (Citrobacter virus HCF1, complete genome) position: , mismatch: 8, identity: 0.75

gtccggacggcaatcattttagcatcgagcac	CRISPR spacer
accgttgcggcagtcattttagcttcgagcac	Protospacer
..*   .*****.********** ********

98. spacer 7.16|3957102|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_014838 (Pantoea sp. At-9b plasmid pPAT9B01, complete sequence) position: , mismatch: 8, identity: 0.75

--acgccggtgctgtggctgaaagacgtcctgat	CRISPR spacer
caatatc--tgctgtggctgaaaaacctcctgac	Protospacer
  *...*  **************.** ******.

99. spacer 7.24|3957584|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039192 (Piscirickettsia salmonis strain Psal-160 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

catgtcattttcacctgagcgttagcattgtt	CRISPR spacer
gttgtcattttcacctgaaagttagcatatga	Protospacer
  ****************. ********

100. spacer 7.24|3957584|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013764 (Piscirickettsia salmonis strain PM21567A plasmid p2PS2, complete sequence) position: , mismatch: 8, identity: 0.75

catgtcattttcacctgagcgttagcattgtt	CRISPR spacer
gttgtcattttcacctgaaagttagcatatga	Protospacer
  ****************. ********

101. spacer 7.24|3957584|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013758 (Piscirickettsia salmonis strain AY6492A plasmid p1PS1, complete sequence) position: , mismatch: 8, identity: 0.75

catgtcattttcacctgagcgttagcattgtt	CRISPR spacer
gttgtcattttcacctgaaagttagcatatga	Protospacer
  ****************. ********

102. spacer 7.24|3957584|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039183 (Piscirickettsia salmonis strain Psal-158 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

catgtcattttcacctgagcgttagcattgtt	CRISPR spacer
gttgtcattttcacctgaaagttagcatatga	Protospacer
  ****************. ********

103. spacer 7.24|3957584|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012416 (Piscirickettsia salmonis strain PM15972A1 plasmid pPSA1-3, complete sequence) position: , mismatch: 8, identity: 0.75

catgtcattttcacctgagcgttagcattgtt	CRISPR spacer
gttgtcattttcacctgaaagttagcatatga	Protospacer
  ****************. ********

104. spacer 7.24|3957584|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039067 (Piscirickettsia salmonis strain Psal-107 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

catgtcattttcacctgagcgttagcattgtt	CRISPR spacer
gttgtcattttcacctgaaagttagcatatga	Protospacer
  ****************. ********

105. spacer 7.27|3957764|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 8, identity: 0.75

gctgcgacgcctcggcagccgacacccgcatc	CRISPR spacer
ccagcgacgcctcggcggccgacgccacccgc	Protospacer
 * *************.******.**  *  *

106. spacer 7.30|3957944|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 8, identity: 0.75

gagcgggtgatcgtcaaagaggtagacaaggc	CRISPR spacer
gtgaagcggatcgtcaaagtggcagacaagga	Protospacer
* * .*  *********** **.********

107. spacer 7.30|3957944|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 8, identity: 0.75

gagcgggtgatcgtcaaagaggtagacaaggc	CRISPR spacer
gtgaagcggatcgtcaaagtggcagacaagga	Protospacer
* * .*  *********** **.********

108. spacer 7.35|3958245|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to KM236237 (Citrobacter phage Miller, complete genome) position: , mismatch: 8, identity: 0.75

aatcccataaaacaaaagcccctgcatttctg	CRISPR spacer
atacccataataaaaaagcccctgcaaaaatg	Protospacer
*  ******* * *************    **

109. spacer 7.35|3958245|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_031057 (Citrobacter phage vB_CfrM_CfP1, complete genome) position: , mismatch: 8, identity: 0.75

aatcccataaaacaaaagcccctgcatttctg	CRISPR spacer
atacccataataaaaaagcccctgcaaaaatg	Protospacer
*  ******* * *************    **

110. spacer 7.35|3958245|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_029013 (Citrobacter phage IME-CF2, complete genome) position: , mismatch: 8, identity: 0.75

aatcccataaaacaaaagcccctgcatttctg	CRISPR spacer
atacccataataaaaaagcccctgcaaaaatg	Protospacer
*  ******* * *************    **

111. spacer 7.35|3958245|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to KT381880 (Citrobacter phage Margaery, complete genome) position: , mismatch: 8, identity: 0.75

aatcccataaaacaaaagcccctgcatttctg	CRISPR spacer
atacccataataaaaaagcccctgcaaaaatg	Protospacer
*  ******* * *************    **

112. spacer 7.41|3958605|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

-agataccgagccccttgactgcaatttagtgc	CRISPR spacer
cgggtaat-agcccattgactgcaatctagtgg	Protospacer
 .*.** . ***** ***********.*****

113. spacer 7.45|3958845|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtgcagttcgccagcgccgcccttgcaacc	CRISPR spacer
tcaagcagttcggcagcgccgtccttgcatat	Protospacer
 *. ******** ********.*******  .

114. spacer 7.45|3958845|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtgcagttcgccagcgccgcccttgcaacc	CRISPR spacer
ttgaacagttcgccagcgccgccttggccgcc	Protospacer
 .* .******************.* ** .**

115. spacer 7.48|3959025|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_027640 (Microviridae Fen418_41, complete genome) position: , mismatch: 8, identity: 0.75

tgtactcacgcccacgatcatcattgtacaaa	CRISPR spacer
tgaactcacgctcacgatcatcattcttatgt	Protospacer
** ********.************* *   .

116. spacer 2.11|441344|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to MK801725 (Gordonia phage Yago84, complete genome) position: , mismatch: 9, identity: 0.719

aggtgtaccgcaccgctctggagcagtctggt	CRISPR spacer
cggtgtaccgcaccgccatggagctgcccaac	Protospacer
 ***************. ****** *.*....

117. spacer 2.13|441466|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to MH121069 (Pseudomonas phage vB_PaeM_PA5oct, complete genome) position: , mismatch: 9, identity: 0.719

ccaatggcaccggggatagatgtaatatcaga	CRISPR spacer
cctgcggcgccggggatagatgtattatgttt	Protospacer
** ..***.*************** ***

118. spacer 2.15|441588|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to NC_048639 (Pseudomonas phage ZC08, complete genome) position: , mismatch: 9, identity: 0.719

ttccaaccctttcagcaagctctacctgagta	CRISPR spacer
ttccaaccctttcagcatgttcttttgatcta	Protospacer
***************** *.*** .. .  **

119. spacer 2.15|441588|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to NC_048638 (Pseudomonas phage ZC03, complete genome) position: , mismatch: 9, identity: 0.719

ttccaaccctttcagcaagctctacctgagta	CRISPR spacer
ttccaaccctttcagcatgttcttttgatcta	Protospacer
***************** *.*** .. .  **

120. spacer 5.1|1276685|31|CP026979|CRISPRCasFinder matches to NZ_CP046029 (Staphylococcus chromogenes strain 1401 plasmid unnamed1) position: , mismatch: 9, identity: 0.71

gaaaaacgttccccacg----tttttttatggcgt	CRISPR spacer
ataaaacgttccccacgtttatttttctaca----	Protospacer
. ***************    *****.**..

121. spacer 6.2|3938765|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 9, identity: 0.719

tcaactctgcccgttgctgctgtcggcgggta	CRISPR spacer
ctcgatctgctccttgctgctgtcggcggcaa	Protospacer
.. . *****.* ****************  *

122. spacer 6.2|3938765|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018230 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tcaactctgcccgttgctgctgtcggcgggta	CRISPR spacer
cgaactctgcacgtcgctgctgtcgagcagga	Protospacer
. ******** ***.**********.  .* *

123. spacer 6.2|3938765|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026330 (Acidithiobacillus caldus strain MTH-04 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

tcaactctgcccgttgctgctgtcggcgggta	CRISPR spacer
ccaattctgccctttgctgctgtcacggtgac	Protospacer
.***.******* ***********.  * *

124. spacer 6.2|3938765|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_010600 (Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence) position: , mismatch: 9, identity: 0.719

tcaactctgcccgttgctgctgtcggcgggta	CRISPR spacer
ccaattctgccctttgctgctgtcacggtgac	Protospacer
.***.******* ***********.  * *

125. spacer 7.1|3956201|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046254 (Sphingobium sp. CAP-1 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

aaacgcatcaatgaacggcactgcgccgcgat	CRISPR spacer
cccggagtgaacgcacggcactgcgccgcgat	Protospacer
    * .* **.* ******************

126. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MK373778 (Escherichia phage vB_EcoM_WFbE185, complete genome) position: , mismatch: 9, identity: 0.719

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacaccgacggttaattta	Protospacer
* .   *..*******.********* *****

127. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to KP869111 (Escherichia coli O157 typing phage 13, partial genome) position: , mismatch: 9, identity: 0.719

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacaccgacggttaattta	Protospacer
* .   *..*******.********* *****

128. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MK373784 (Escherichia phage vB_EcoM_MM02, complete genome) position: , mismatch: 9, identity: 0.719

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacaccgacggttaattta	Protospacer
* .   *..*******.********* *****

129. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MH992122 (UNVERIFIED: Escherichia phage OLB35, complete genome) position: , mismatch: 9, identity: 0.719

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacaccgacggttaattta	Protospacer
* .   *..*******.********* *****

130. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to KM389386 (UNVERIFIED: Escherichia phage CEV1 clone contig00001 genomic sequence) position: , mismatch: 9, identity: 0.719

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacaccgacggttaattta	Protospacer
* .   *..*******.********* *****

131. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to KP869104 (Escherichia coli O157 typing phage 6, complete genome) position: , mismatch: 9, identity: 0.719

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacaccgacggttaattta	Protospacer
* .   *..*******.********* *****

132. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to KY703222 (Escherichia phage phiC120, complete genome) position: , mismatch: 9, identity: 0.719

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacaccgacggttaattta	Protospacer
* .   *..*******.********* *****

133. spacer 7.12|3956862|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_041863 (Escherichia coli O157 typing phage 3, complete genome) position: , mismatch: 9, identity: 0.719

cgtcatcaacatctacgccgacggttcattta	CRISPR spacer
cccatacggcatctacaccgacggttaattta	Protospacer
* .   *..*******.********* *****

134. spacer 7.25|3957644|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 9, identity: 0.719

tacgcgatgacgctgcccgatagtgccgcgtt	CRISPR spacer
gatcagctgccgctgcccgaaagtgccgcggc	Protospacer
 *.  * ** ********** ********* .

135. spacer 7.25|3957644|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020952 (Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence) position: , mismatch: 9, identity: 0.719

tacgcgatgacgctgcccgatagtgccgcgtt	CRISPR spacer
gatcagttgccgctgcccgaaagtgccgcggc	Protospacer
 *.  * ** ********** ********* .

136. spacer 7.25|3957644|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 9, identity: 0.719

tacgcgatgacgctgcccgatagtgccgcgtt	CRISPR spacer
gatcagctgccgctgcccgaaagtgccgcggc	Protospacer
 *.  * ** ********** ********* .

137. spacer 7.25|3957644|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 9, identity: 0.719

tacgcgatgacgctgcccgatagtgccgcgtt	CRISPR spacer
gatcagctgccgctgcccgaaagtgccgcggc	Protospacer
 *.  * ** ********** ********* .

138. spacer 7.25|3957644|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 9, identity: 0.719

tacgcgatgacgctgcccgatagtgccgcgtt	CRISPR spacer
gatcagctgccgctgcccgaaagtgccgcggc	Protospacer
 *.  * ** ********** ********* .

139. spacer 7.25|3957644|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tacgcgatgacgctgcccgatagtgccgcgtt	CRISPR spacer
gatcagctgccgctgcccgaaagtgccgcggc	Protospacer
 *.  * ** ********** ********* .

140. spacer 7.25|3957644|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 9, identity: 0.719

tacgcgatgacgctgcccgatagtgccgcgtt	CRISPR spacer
gatcagctgccgctgcccgaaagtgccgcggc	Protospacer
 *.  * ** ********** ********* .

141. spacer 7.25|3957644|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 9, identity: 0.719

tacgcgatgacgctgcccgatagtgccgcgtt	CRISPR spacer
gatcagctgccgctgcccgaaagtgccgcggc	Protospacer
 *.  * ** ********** ********* .

142. spacer 7.30|3957944|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 9, identity: 0.719

gagcgggtgatcgtcaaagaggtagacaaggc	CRISPR spacer
gtgaaacggatcgtcaaagtggcagacaagga	Protospacer
* * ..  *********** **.********

143. spacer 7.35|3958245|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to MG592671 (Vibrio phage 2.275.O._10N.286.54.E11, partial genome) position: , mismatch: 9, identity: 0.719

aatcccataaaacaaaagcccct-------gcatttctg	CRISPR spacer
aatcacttaaaacaaaagccccttaacggggc-------	Protospacer
**** * ****************       **

144. spacer 7.43|3958725|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024423 (Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence) position: , mismatch: 9, identity: 0.719

ctggtcgaatagcagggataaccggcaatgtc	CRISPR spacer
ctggtcgtatagcagggatagccctcggcctt	Protospacer
******* ************.**  *... *.

145. spacer 7.45|3958845|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 9, identity: 0.719

gcgtgcagttcgccagcgccgcccttgcaacc	CRISPR spacer
atgatttgatcgcctgcgcctcccttgcaacc	Protospacer
..*  . * ***** ***** ***********

146. spacer 7.48|3959025|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_023007 (Bacillus phage vB_BanS-Tsamsa, complete genome) position: , mismatch: 9, identity: 0.719

tgtactcacgcccacgatcatcattgtacaaa	CRISPR spacer
cgtactcacgaccaccatcatcatctttaatt	Protospacer
.********* **** ********. *  *

147. spacer 2.5|440978|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

taaaacgaaatggaatacaaggaaatgggatg	CRISPR spacer
tttttttgtatggaatataaggaaatggaatg	Protospacer
*    . . ********.**********.***

148. spacer 2.7|441100|32|CP026979|CRISPRCasFinder,CRT,PILER-CR matches to MN693407 (Marine virus AFVG_25M242, complete genome) position: , mismatch: 10, identity: 0.688

aattaccagatgaggcgtatgagtatggggat	CRISPR spacer
ttttaccagatgagccgtatgtgtagacaaaa	Protospacer
  ************ ****** *** . ..*

149. spacer 7.10|3956742|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018173 (Calothrix sp. NIES-2098 plasmid plasmid1 DNA, complete genome) position: , mismatch: 10, identity: 0.688

aattccactggaaaaactgacagcatttacaa	CRISPR spacer
acaaccactcgaaaagctgacagcattctttt	Protospacer
*   ***** *****.***********. .

150. spacer 7.25|3957644|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013635 (Rhizobium sp. N324 plasmid pRspN324e, complete sequence) position: , mismatch: 10, identity: 0.688

tacgcgatgacgctgcccgatagtgccgcgtt	CRISPR spacer
gatcaactgccgctgcccgaaagtgccgcggc	Protospacer
 *.  . ** ********** ********* .

151. spacer 7.25|3957644|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 10, identity: 0.688

tacgcgatgacgctgcccgatagtgccgcgtt	CRISPR spacer
gatcaactgccgctgcccgaaagtgccgcggc	Protospacer
 *.  . ** ********** ********* .

152. spacer 7.27|3957764|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033072 (Streptomyces sp. Z022 plasmid unnamed1) position: , mismatch: 10, identity: 0.688

gctgcgacgcctcggcagccgacacccgcatc	CRISPR spacer
gctgcgccgcctcggcaggcgacttaccggct	Protospacer
****** *********** **** . *  ...

153. spacer 7.27|3957764|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 10, identity: 0.688

gctgcgacgcctcggcagccgacacccgcatc	CRISPR spacer
gtatcgacgcctcggccgccgacatcccggcg	Protospacer
*.  ************ *******.**  ..

154. spacer 7.28|3957824|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to KX669658 (Ochrobactrum phage POA1180, complete genome) position: , mismatch: 10, identity: 0.688

gaagtcacgctggagtttgacgatctgcccga	CRISPR spacer
gaagtcacgctggagttttgcgagacacagct	Protospacer
****************** .***  ..*

155. spacer 7.35|3958245|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NC_005355 (Lactobacillus prophage Lj965, complete genome) position: , mismatch: 10, identity: 0.688

aatcccataaaacaaaagcccctgcatttctg	CRISPR spacer
gaaaatataaaacaaaatcctctgcatttaat	Protospacer
.*   .*********** **.********

156. spacer 7.35|3958245|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to AY459535 (Lactobacillus johnsonii prophage Lj965, complete genome) position: , mismatch: 10, identity: 0.688

aatcccataaaacaaaagcccctgcatttctg	CRISPR spacer
gaaaatataaaacaaaatcctctgcatttaat	Protospacer
.*   .*********** **.********

157. spacer 7.45|3958845|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032520 (Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtgcagttcgccagcgccgcccttgcaacc	CRISPR spacer
cgaagcagtgcgtcagcgccgcccttggcctc	Protospacer
  . ***** **.**************   .*

158. spacer 7.45|3958845|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017242 (Rhizobium etli 8C-3 plasmid pRsp8C3a, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtgcagttcgccagcgccgcccttgcaacc	CRISPR spacer
ccgagcagttcgacagcgccgcccgcattcgc	Protospacer
 ** ******** *********** ...   *

159. spacer 6.2|3938765|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049906 (Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

tcaactctgcccgttgctgctgtcggcgggta	CRISPR spacer
attcgtctgcgcgatgctgctgtcggcgctgg	Protospacer
 .   ***** ** **************   .

160. spacer 7.1|3956201|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to CP053919 (Serratia marcescens strain LY1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

aaacgcatcaatgaacggcactgcgccgcgat	CRISPR spacer
cgttaaatcaatgaacgacactgcgtcgctgg	Protospacer
 . .. ***********.*******.*** .

161. spacer 7.1|3956201|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP013065 (Serratia marcescens SM39 plasmid pSMC2, complete sequence) position: , mismatch: 11, identity: 0.656

aaacgcatcaatgaacggcactgcgccgcgat	CRISPR spacer
cgttaaatcaatgaacgacactgcgtcgctgg	Protospacer
 . .. ***********.*******.*** .

162. spacer 7.45|3958845|32|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 11, identity: 0.656

gcgtgcagttcgccagcgccgcccttgcaacc	CRISPR spacer
tagtgcagttcggcagcgccgcgctccacgta	Protospacer
  ********** ********* **.   ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1161700 : 1167103

Mycobacterium_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYH31127.1\|1161700_1162165_-	ribonuclease HI	J9Q745	Salmonella_phage	1.7e-48	57.3
AYH31128.1\|1162220_1162958_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	5.0e-39	38.4
AYH31129.1\|1163314_1164277_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	1.9e-139	74.2
AYH31130.1\|1164301_1166449_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	4.9e-204	51.0
AYH31131.1\|1166445_1166853_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A220BYR7	Staphylococcus_phage	1.4e-06	27.7
AYH31132.1\|1166863_1167103_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	3.5e-18	58.1

DBSCAN-SWA_2

2214244 : 2224238

Tupanvirus(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYH31981.1\|2214244_2216173_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	4.4e-127	36.4
AYH31982.1\|2216175_2216718_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.8e-15	33.5
AYH31983.1\|2216831_2217029_+	50S ribosomal protein L35	NA	NA	NA	NA
AYH31984.1\|2217072_2217429_+	50S ribosomal protein L20	NA	NA	NA	NA
AYH31985.1\|2217757_2218741_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	4.5e-35	39.3
AYH31986.1\|2218755_2221143_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	5.1e-08	28.9
AYH31987.1\|2221147_2221444_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	5.5e-13	40.0
AYH31988.1\|2221511_2221973_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AYH31989.1\|2222005_2222383_-	nitrous oxide-stimulated promoter family protein	NA	NA	NA	NA
AYH31990.1\|2222519_2224238_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.1e-57	31.0

DBSCAN-SWA_3

2934388 : 2992090

Burkholderia_phage(39.13%)

bacteriocin,plate,tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYH34493.1\|2934388_2934685_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AYH32590.1\|2934763_2934964_-	hypothetical protein	NA	NA	NA	NA
AYH34494.1\|2935251_2935467_+	hypothetical protein	NA	NA	NA	NA
AYH32591.1\|2936215_2936875_+	transmembrane protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	48.8
AYH32592.1\|2936986_2937316_+	sulfurtransferase TusE	NA	NA	NA	NA
AYH32593.1\|2937326_2937605_-	acylphosphatase	NA	NA	NA	NA
AYH32594.1\|2937838_2938147_+	heat shock protein HspQ	NA	NA	NA	NA
AYH32595.1\|2938227_2938641_-	CoA-binding protein	NA	NA	NA	NA
AYH32596.1\|2938836_2939361_+	DUF2057 domain-containing protein	NA	NA	NA	NA
AYH32597.1\|2939498_2939957_+	methylglyoxal synthase	NA	NA	NA	NA
AYH32598.1\|2940035_2942093_-	DNA helicase IV	A7KV33	Bacillus_phage	2.2e-15	25.7
AYH32599.1\|2942279_2942726_+	YccF domain-containing protein	NA	NA	NA	NA
AYH32600.1\|2942746_2944882_+	TIGR01666 family membrane protein	NA	NA	NA	NA
AYH32601.1\|2944897_2945518_-	competence-specific regulator	NA	NA	NA	NA
AYH32602.1\|2945740_2946247_+	cell division inhibitor SulA	NA	NA	NA	NA
AYH32603.1\|2946609_2947695_+	porin OmpA	NA	NA	NA	NA
AYH32604.1\|2947845_2948307_-	macrodomain Ter protein MatP	NA	NA	NA	NA
AYH32605.1\|2948483_2950253_+\|protease	Lon protease	NA	NA	NA	NA
AYH32606.1\|2950344_2950863_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
AYH32607.1\|2950959_2951613_-	DUF533 domain-containing protein	NA	NA	NA	NA
AYH32608.1\|2952107_2952746_+	hypothetical protein	NA	NA	NA	NA
AYH32609.1\|2953491_2953803_+	hypothetical protein	NA	NA	NA	NA
AYH32610.1\|2954367_2954613_+	DUF2543 domain-containing protein	NA	NA	NA	NA
AYH32611.1\|2954867_2955407_+	DUF2058 domain-containing protein	NA	NA	NA	NA
AYH32612.1\|2955707_2956190_+	cold-shock protein	NA	NA	NA	NA
AYH32613.1\|2956263_2957304_-	hypothetical protein	NA	NA	NA	NA
AYH32614.1\|2957749_2958079_-	hypothetical protein	NA	NA	NA	NA
AYH32615.1\|2958136_2958673_-	hypothetical protein	NA	NA	NA	NA
AYH32616.1\|2959046_2960447_+	FMN/FAD transporter	NA	NA	NA	NA
AYH32617.1\|2960494_2961664_-	MFS transporter	NA	NA	NA	NA
AYH32618.1\|2961954_2962470_-	outer membrane protein OmpX	H6WZM8	Escherichia_phage	2.0e-15	33.5
AYH32619.1\|2962846_2963728_+	threonine/homoserine exporter RhtA	NA	NA	NA	NA
AYH32620.1\|2963741_2964281_-	adenylate kinase	A0A097BYE2	Leuconostoc_phage	2.8e-15	36.1
AYH32621.1\|2964594_2965098_+	DNA starvation/stationary phase protection protein	A0A222YYG6	Streptomyces_phage	1.4e-08	28.9
AYH32622.1\|2965495_2966242_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA
AYH32623.1\|2966268_2966928_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA
AYH32624.1\|2966924_2967647_+	glutamine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.0e-36	42.7
AYH32625.1\|2967686_2969555_-	peptidase M3	NA	NA	NA	NA
AYH32626.1\|2969641_2970610_-	DNA-binding protein YbiB	NA	NA	NA	NA
AYH32627.1\|2970719_2970962_-	hypothetical protein	A0A286S1P7	Klebsiella_phage	1.8e-14	63.5
AYH32628.1\|2974198_2974780_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	6.2e-61	60.6
AYH32629.1\|2974772_2975876_-\|plate	baseplate protein	Q6QI99	Burkholderia_phage	5.1e-104	54.3
AYH32630.1\|2975866_2976214_-\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	9.5e-33	62.0
AYH32631.1\|2976273_2976855_-\|plate	phage baseplate assembly protein V	Q6QIA1	Burkholderia_phage	6.1e-24	45.6
AYH32632.1\|2976851_2978006_-	phage protein D	Q6QIA2	Burkholderia_phage	1.3e-89	52.6
AYH32633.1\|2977993_2978206_-	hypothetical protein	A4JWL2	Burkholderia_virus	2.6e-17	57.1
AYH32634.1\|2978205_2979123_-	hypothetical protein	Q6QIA4	Burkholderia_phage	6.0e-50	45.9
AYH34495.1\|2979122_2981570_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.7e-89	31.3
AYH34496.1\|2981792_2981936_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
AYH32635.1\|2981880_2982201_-\|tail	phage tail assembly protein	NA	NA	NA	NA
AYH32636.1\|2982343_2982868_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	9.5e-69	66.7
AYH32637.1\|2982867_2984295_-\|tail	phage tail protein	A4JWK5	Burkholderia_virus	9.5e-204	73.6
AYH32638.1\|2984284_2984482_-	hypothetical protein	Q6QIB1	Burkholderia_phage	5.4e-09	58.8
AYH32639.1\|2984478_2984946_-	hypothetical protein	NA	NA	NA	NA
AYH32640.1\|2985189_2985501_-	hypothetical protein	Q6QIC3	Burkholderia_phage	8.3e-20	45.5
AYH32641.1\|2985493_2985823_-	hypothetical protein	Q6QIC4	Burkholderia_phage	2.5e-19	50.0
AYH32642.1\|2985812_2986487_-	hypothetical protein	NA	NA	NA	NA
AYH32643.1\|2986476_2987088_-	lytic transglycosylase	Q5ZQZ1	Pseudomonas_phage	2.7e-59	56.0
AYH32644.1\|2987089_2987419_-	hypothetical protein	A4JWP3	Burkholderia_virus	1.2e-24	58.3
AYH32645.1\|2987635_2989003_-	peptidase	NA	NA	NA	NA
AYH32646.1\|2989005_2990334_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
AYH32647.1\|2990362_2992090_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	7.3e-25	33.1

DBSCAN-SWA_4

3109422 : 3115630

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYH32746.1\|3109422_3110829_-	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	A0A1D7RI04	Synechococcus_phage	1.5e-31	29.6
AYH32747.1\|3111062_3111959_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	3.5e-47	40.8
AYH32748.1\|3112193_3113063_+	glucose-1-phosphate thymidylyltransferase	A0A291LA53	Escherichia_phage	2.7e-108	66.3
AYH32749.1\|3113064_3113601_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.8e-59	60.3
AYH32750.1\|3113597_3114443_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.2e-46	40.8
AYH32751.1\|3114484_3115630_-	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	1.1e-80	45.3

DBSCAN-SWA_5

3351455 : 3390575

Burkholderia_phage(24.39%)

head,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYH32949.1\|3351455_3351692_-	hypothetical protein	H9C1B5	Pectobacterium_phage	2.2e-17	67.2
AYH34510.1\|3352062_3352389_+	DinI family protein	K7PKM2	Enterobacterial_phage	1.9e-22	60.7
AYH32950.1\|3352345_3352927_-	hypothetical protein	H9C1B8	Pectobacterium_phage	3.8e-58	54.9
AYH32951.1\|3352936_3355003_-\|tail	phage tail protein	H9C1B7	Pectobacterium_phage	5.6e-205	58.6
AYH32952.1\|3355068_3357015_-	hypothetical protein	A0A2D2W7C0	Pectobacterium_phage	1.4e-43	33.0
AYH34511.1\|3357017_3357767_-	hypothetical protein	H9C1B4	Pectobacterium_phage	7.0e-57	54.4
AYH32953.1\|3357992_3358832_-	hypothetical protein	P79672	Haemophilus_phage	2.5e-18	29.1
AYH32954.1\|3358843_3360040_-	hypothetical protein	Q6IWQ3	Burkholderia_phage	7.0e-83	48.3
AYH32955.1\|3360032_3360383_-	hypothetical protein	Q6IWQ2	Burkholderia_phage	5.1e-18	48.6
AYH32956.1\|3360391_3361072_-	hypothetical protein	Q6IWQ1	Burkholderia_phage	1.6e-44	46.3
AYH32957.1\|3361050_3361896_-	hypothetical protein	Q6IWQ0	Burkholderia_phage	1.4e-50	39.9
AYH32958.1\|3361892_3362195_-	hypothetical protein	NA	NA	NA	NA
AYH32959.1\|3362191_3362722_-	hypothetical protein	Q6IWP8	Burkholderia_phage	2.6e-21	36.6
AYH32960.1\|3362718_3364272_-	hypothetical protein	A0A2H5BG44	Pseudoalteromonas_phage	5.6e-24	26.0
AYH32961.1\|3364375_3364810_-	hypothetical protein	Q6IWV4	Burkholderia_phage	1.1e-30	56.3
AYH32962.1\|3364809_3365253_-	hypothetical protein	A0A0F6SJB3	Pseudomonas_phage	3.1e-36	53.8
AYH32963.1\|3365266_3366760_-	DUF3383 domain-containing protein	I7B2P4	Escherichia_phage	1.8e-88	40.6
AYH32964.1\|3366773_3367316_-	hypothetical protein	NA	NA	NA	NA
AYH32965.1\|3367312_3367678_-	hypothetical protein	A0A0S3UGD4	Pseudomonas_phage	5.0e-08	30.4
AYH32966.1\|3367674_3368178_-	hypothetical protein	NA	NA	NA	NA
AYH32967.1\|3368177_3368615_-	DUF4054 domain-containing protein	A0A0K0L9X6	Pseudomonas_phage	3.6e-29	45.5
AYH32968.1\|3368624_3368993_-	hypothetical protein	NA	NA	NA	NA
AYH32969.1\|3369049_3370189_-	hypothetical protein	Q6IWU6	Burkholderia_phage	2.0e-95	46.3
AYH32970.1\|3370201_3370699_-	hypothetical protein	A1Z022	Burkholderia_virus	6.8e-08	32.0
AYH32971.1\|3370698_3371889_-	hypothetical protein	Q6IWU4	Burkholderia_phage	4.0e-46	40.4
AYH32972.1\|3371885_3372761_-\|head	head morphogenesis protein	Q6IWU3	Burkholderia_phage	4.8e-49	38.2
AYH32973.1\|3372708_3374253_-\|head	phage head protein	Q6IWU2	Burkholderia_phage	1.4e-112	45.8
AYH32974.1\|3374257_3375865_-	TerL protein	A0A0M5M1R6	Salmonella_phage	1.3e-236	74.0
AYH32975.1\|3376084_3376558_-	hypothetical protein	F1C5D6	Cronobacter_phage	2.6e-49	69.1
AYH32976.1\|3376588_3377227_-	hypothetical protein	H9C189	Pectobacterium_phage	2.4e-122	95.3
AYH32977.1\|3377343_3377589_-	hypothetical protein	NA	NA	NA	NA
AYH32978.1\|3377681_3378233_-	hypothetical protein	H9C185	Pectobacterium_phage	1.8e-65	76.2
AYH32979.1\|3378229_3378670_-	muraminidase	A0A0M4R365	Salmonella_phage	5.8e-51	69.1
AYH32980.1\|3378653_3378995_-\|holin	phage holin, lambda family	NA	NA	NA	NA
AYH32981.1\|3379092_3379500_-	antitoxin	F1C593	Cronobacter_phage	5.5e-40	63.7
AYH32982.1\|3379548_3379725_-	type II toxin-antitoxin system HicA family toxin	A0A0M3LQ86	Mannheimia_phage	5.5e-13	62.1
AYH32983.1\|3379785_3380511_-	protein mom	A0A0C4UQZ7	Shigella_phage	9.1e-86	65.2
AYH32984.1\|3380744_3381149_-	antitermination protein	U5P0A5	Shigella_phage	5.1e-30	52.1
AYH32985.1\|3381148_3382006_-	helix-turn-helix domain containing protein	F1C596	Cronobacter_phage	1.3e-102	62.7
AYH32986.1\|3381995_3383387_-	helicase	Q8W640	Enterobacteria_phage	9.5e-132	53.0
AYH32987.1\|3383383_3384253_-	hypothetical protein	K7PLU3	Enterobacteria_phage	4.0e-56	44.7
AYH32988.1\|3384249_3385173_-	hypothetical protein	Q8W642	Enterobacteria_phage	2.6e-37	47.2
AYH32989.1\|3385169_3385469_-	hypothetical protein	NA	NA	NA	NA
AYH32990.1\|3385465_3386332_-	hypothetical protein	Q8W644	Enterobacteria_phage	8.4e-70	77.6
AYH32991.1\|3386614_3386848_-	transcriptional regulator	G8C7U2	Escherichia_phage	3.3e-13	52.1
AYH32992.1\|3386980_3387667_+	hypothetical protein	A0A2I6PIE7	Escherichia_phage	1.7e-57	52.8
AYH32993.1\|3387829_3388135_+	hypothetical protein	NA	NA	NA	NA
AYH32994.1\|3388139_3388406_+	hypothetical protein	NA	NA	NA	NA
AYH32995.1\|3388392_3388764_+	hypothetical protein	NA	NA	NA	NA
AYH32996.1\|3388914_3389232_+	hypothetical protein	NA	NA	NA	NA
AYH32997.1\|3389224_3389497_+	hypothetical protein	NA	NA	NA	NA
AYH32998.1\|3389652_3389853_+	hypothetical protein	A0A286S1P8	Klebsiella_phage	5.7e-06	45.6
AYH32999.1\|3389845_3390079_+	hypothetical protein	NA	NA	NA	NA
AYH33000.1\|3390068_3390575_+	hypothetical protein	F1C5A2	Cronobacter_phage	1.6e-33	43.5

DBSCAN-SWA_6

3624957 : 3705274

Enterobacteria_phage(18.33%)

lysis,portal,integrase,holin,coat

attL 3660018:3660062|attR 3701092:3701136

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYH33184.1\|3624957_3626217_+\|integrase	integrase	B7SYF8	Stenotrophomonas_phage	3.0e-84	44.3
AYH33185.1\|3627119_3627341_-	DNA-binding protein	A0A2I7S995	Vibrio_phage	2.1e-17	63.2
AYH33186.1\|3627461_3627722_+	XRE family transcriptional regulator	NA	NA	NA	NA
AYH33187.1\|3627825_3628092_+	transcriptional regulator	NA	NA	NA	NA
AYH34520.1\|3628765_3629101_+	hypothetical protein	NA	NA	NA	NA
AYH33188.1\|3629087_3630038_+	DUF4868 domain-containing protein	NA	NA	NA	NA
AYH33189.1\|3630177_3631899_-	ATPase	NA	NA	NA	NA
AYH33190.1\|3631909_3632923_-	SIR2 family protein	NA	NA	NA	NA
AYH33191.1\|3633635_3634895_+\|integrase	integrase	B7SYF8	Stenotrophomonas_phage	1.8e-76	40.2
AYH33192.1\|3635001_3635196_-	hypothetical protein	A0A0K2FIR8	Escherichia_phage	3.8e-07	43.1
AYH33193.1\|3635381_3635723_+	hypothetical protein	NA	NA	NA	NA
AYH33194.1\|3635892_3636576_+	hypothetical protein	NA	NA	NA	NA
AYH33195.1\|3636627_3637371_+	molybdopterin-guanine dinucleotide biosynthesis protein MobC	NA	NA	NA	NA
AYH33196.1\|3637429_3637648_+	hypothetical protein	NA	NA	NA	NA
AYH33197.1\|3637650_3637956_+	plasmid maintenance protein CcdB	NA	NA	NA	NA
AYH33198.1\|3638284_3638671_+	hypothetical protein	NA	NA	NA	NA
AYH33199.1\|3639146_3639641_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AYH33200.1\|3639637_3639931_-	CopG family transcriptional regulator	NA	NA	NA	NA
AYH33201.1\|3640118_3640805_-	DNA primase	A0A0K0N7B5	Gordonia_phage	8.0e-07	53.5
AYH33202.1\|3641367_3642597_+\|integrase	integrase	B7SYF8	Stenotrophomonas_phage	8.5e-84	44.1
AYH33203.1\|3642630_3642894_+	transcriptional regulator	NA	NA	NA	NA
AYH33204.1\|3643300_3645271_+	hypothetical protein	C6ZR20	Salmonella_phage	2.0e-63	35.1
AYH33205.1\|3645954_3646311_-	hypothetical protein	A0A0A0YSY3	Erwinia_phage	9.5e-12	50.6
AYH33206.1\|3648705_3649197_+	hypothetical protein	NA	NA	NA	NA
AYH33207.1\|3649189_3649774_+	cell filamentation protein Fic	NA	NA	NA	NA
AYH33208.1\|3649947_3652275_-	DNA primase	Q7M2A8	Enterobacteria_phage	3.3e-270	60.6
AYH33209.1\|3652285_3652627_-	hypothetical protein	NA	NA	NA	NA
AYH33210.1\|3652623_3652890_-	hypothetical protein	NA	NA	NA	NA
AYH33211.1\|3652886_3653618_-	hypothetical protein	Q7M2A7	Enterobacteria_phage	2.7e-05	52.5
AYH33212.1\|3653626_3653851_-	hypothetical protein	NA	NA	NA	NA
AYH33213.1\|3653847_3654108_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	8.7e-15	54.5
AYH33214.1\|3654653_3655385_+	hypothetical protein	NA	NA	NA	NA
AYH33215.1\|3655381_3655630_+	hypothetical protein	A0A2I8TV89	Erwinia_phage	1.4e-14	61.9
AYH33216.1\|3655523_3655760_-	hypothetical protein	NA	NA	NA	NA
AYH33217.1\|3655748_3655955_+	hypothetical protein	NA	NA	NA	NA
AYH33218.1\|3656065_3656965_-	hypothetical protein	NA	NA	NA	NA
AYH33219.1\|3656961_3658617_-	hypothetical protein	K7PHD1	Enterobacteria_phage	1.1e-14	26.1
AYH33220.1\|3658689_3659856_-\|integrase	integrase	Q7M297	Enterobacteria_phage	1.5e-146	64.0
AYH33221.1\|3659854_3660070_+	hypothetical protein	NA	NA	NA	NA
3660018:3660062	attL	NA	NA	NA	NA
AYH33222.1\|3660340_3662203_-	hypothetical protein	C6ZR19	Salmonella_phage	2.3e-56	74.0
AYH33223.1\|3663233_3663395_-	transcriptional regulator	A8CG91	Salmonella_phage	5.4e-15	71.7
AYH33224.1\|3663483_3663732_+	toxin-antitoxin system HicB family antitoxin	A5VW60	Enterobacteria_phage	5.9e-29	81.0
AYH34521.1\|3664135_3664525_+	hypothetical protein	I6S5X4	Salmonella_phage	3.2e-37	58.1
AYH34522.1\|3664542_3666285_-	injection protein	A0A2I7QQN9	Vibrio_phage	9.5e-89	36.5
AYH33225.1\|3666854_3668261_-	acyltransferase	I6RSG0	Salmonella_phage	4.4e-60	37.5
AYH33226.1\|3668260_3668935_-	DNA transfer protein	A0A0A0P253	Enterobacteria_phage	8.0e-44	52.5
AYH33227.1\|3668918_3669311_-	hypothetical protein	NA	NA	NA	NA
AYH33228.1\|3669319_3670186_-	hypothetical protein	Q716G6	Shigella_phage	3.9e-51	65.1
AYH33229.1\|3670186_3671605_-	hypothetical protein	A0A075B8I2	Enterobacteria_phage	3.8e-221	77.5
AYH33230.1\|3671576_3672068_-	hypothetical protein	C6ZR12	Salmonella_phage	7.1e-74	86.5
AYH33231.1\|3672051_3672282_-	hypothetical protein	A0A2D1GLK1	Escherichia_phage	1.3e-14	71.7
AYH33232.1\|3672285_3672537_-	hypothetical protein	A0A141E1X7	Streptococcus_phage	9.3e-22	60.0
AYH33233.1\|3672587_3673871_-\|coat	coat protein	A0A2D1GLV2	Escherichia_phage	1.1e-179	72.3
AYH33234.1\|3673870_3674779_-	scaffolding protein	G5DA98	Enterobacteria_phage	2.1e-116	73.9
AYH33235.1\|3674792_3676961_-\|portal	portal protein	A0A2D1GLJ6	Escherichia_phage	2.2e-300	76.6
AYH33236.1\|3676960_3678409_-	DNA packaging protein	Q2A0C1	Sodalis_phage	4.1e-202	70.2
AYH33237.1\|3678377_3678830_-	ubiquitin carboxyl-hydrolase	Q716H4	Shigella_phage	3.6e-32	57.1
AYH33238.1\|3678840_3679107_-	hypothetical protein	A0A286N2R1	Klebsiella_phage	8.6e-10	50.0
AYH33239.1\|3679231_3679510_-	DUF2829 domain-containing protein	A0A1B0VMG3	Pseudomonas_phage	3.0e-21	57.5
AYH33240.1\|3679728_3680163_-\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	5.5e-30	52.3
AYH33241.1\|3680141_3680621_-	lysozyme	B6SD29	Bacteriophage	5.9e-49	60.6
AYH33242.1\|3680617_3680803_-\|holin	holin	B6SD15	Bacteriophage	1.1e-16	73.1
AYH33243.1\|3680934_3681141_+	hypothetical protein	NA	NA	NA	NA
AYH33244.1\|3681164_3681455_+	hypothetical protein	NA	NA	NA	NA
AYH33245.1\|3681723_3682215_-	antiterminator	I6S672	Salmonella_phage	1.7e-67	76.7
AYH33246.1\|3682214_3682727_-	Fis family transcriptional regulator	Q7Y5K0	Xanthomonas_virus	4.4e-34	47.7
AYH33247.1\|3682985_3683192_-	hypothetical protein	NA	NA	NA	NA
AYH33248.1\|3683188_3683992_-	HNH endonuclease	A0A2I7QND8	Vibrio_phage	6.8e-42	47.0
AYH33249.1\|3683988_3684351_-	hypothetical protein	E5AGG1	Erwinia_phage	1.2e-41	69.2
AYH33250.1\|3684347_3684638_-	DUF1364 domain-containing protein	A0A2H4JIC4	uncultured_Caudovirales_phage	1.9e-39	78.1
AYH33251.1\|3684630_3684831_-	hypothetical protein	NA	NA	NA	NA
AYH33252.1\|3684814_3685186_-	Eaf protein	T1SA95	Salmonella_phage	3.5e-25	49.6
AYH33253.1\|3685182_3685362_-	NinE family protein	I6RSI9	Salmonella_phage	2.9e-09	55.2
AYH34523.1\|3685345_3686056_-	Dcm methylase	A0A2I7R4M7	Vibrio_phage	6.2e-79	63.9
AYH33254.1\|3686067_3686370_-	hypothetical protein	NA	NA	NA	NA
AYH33255.1\|3686377_3686827_-	hypothetical protein	A0A2R2Z328	Escherichia_phage	4.8e-53	63.8
AYH33256.1\|3687068_3687266_-	hypothetical protein	NA	NA	NA	NA
AYH33257.1\|3687258_3687642_-	hypothetical protein	NA	NA	NA	NA
AYH34524.1\|3687702_3689118_-	helicase DnaB	F1C5C4	Cronobacter_phage	5.1e-165	62.4
AYH33258.1\|3689107_3690007_-	DNA replication protein	A0A0N7C1Z7	Escherichia_phage	3.4e-98	63.9
AYH33259.1\|3690166_3690466_-	hypothetical protein	E5AGE8	Erwinia_phage	7.4e-34	70.7
AYH33260.1\|3690572_3690761_-	Cro/Cl family transcriptional regulator	K7PLQ6	Enterobacteria_phage	4.5e-21	82.3
AYH33261.1\|3690864_3691578_+	LexA family transcriptional repressor	A0A286S2B2	Klebsiella_phage	1.2e-74	64.1
AYH33262.1\|3692014_3692224_+	hypothetical protein	NA	NA	NA	NA
AYH33263.1\|3692280_3692502_+	hypothetical protein	NA	NA	NA	NA
AYH33264.1\|3692774_3693824_+	hypothetical protein	A0A0U4B0I3	Pseudomonas_phage	2.5e-28	46.7
AYH33265.1\|3694177_3695116_+	hypothetical protein	K7P6J9	Enterobacteria_phage	1.4e-41	76.3
AYH33266.1\|3695306_3695630_+	hypothetical protein	NA	NA	NA	NA
AYH33267.1\|3695629_3696559_+	recombinase RecT	F1C5B8	Cronobacter_phage	1.5e-149	82.5
AYH33268.1\|3696555_3697236_+	exonuclease	F1C5B7	Cronobacter_phage	1.4e-109	80.5
AYH33269.1\|3697286_3697646_+	hypothetical protein	NA	NA	NA	NA
AYH33270.1\|3697649_3698588_+	hypothetical protein	A0A1U9HZ41	Salmonella_phage	8.9e-25	55.1
AYH33271.1\|3698590_3698818_+	hypothetical protein	A0A193GYL4	Enterobacter_phage	1.1e-16	57.3
AYH33272.1\|3698889_3699117_+	hypothetical protein	G8C7S3	Escherichia_phage	1.7e-19	70.4
AYH33273.1\|3699205_3699397_+	hypothetical protein	NA	NA	NA	NA
AYH33274.1\|3699464_3699686_+	hypothetical protein	A0A2H4J398	uncultured_Caudovirales_phage	1.1e-18	66.2
AYH33275.1\|3699913_3701074_+\|integrase	integrase	U5P434	Shigella_phage	8.9e-192	82.4
AYH33276.1\|3701835_3703902_+	L-ascorbate oxidase	NA	NA	NA	NA
3701092:3701136	attR	NA	NA	NA	NA
AYH33277.1\|3704020_3705274_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	4.1e-94	46.2

DBSCAN-SWA_7

4380912 : 4389604

Dickeya_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYH33826.1\|4380912_4382037_+	pectate lyase	A0A140XB77	Dickeya_phage	1.7e-54	71.7
AYH33827.1\|4382704_4383829_+	pectate lyase	A0A140XB77	Dickeya_phage	1.8e-56	73.2
AYH33828.1\|4384536_4385661_+	pectate lyase	A0A140XB77	Dickeya_phage	1.7e-59	77.5
AYH33829.1\|4385823_4387101_+	pectate lyase	A0A1B1IPS8	uncultured_Mediterranean_phage	2.9e-34	32.9
AYH33830.1\|4387185_4387755_-	peptidylprolyl isomerase A	A0A1V0S9I2	Catovirus	3.9e-07	31.9
AYH33831.1\|4387958_4388768_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-29	38.9
AYH33832.1\|4388779_4389604_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-13	31.0

Anti-CRISPR protein detection

Acr_ID: CP026979.1|AYH33243.1|3680934_3681141_+|hypothetical-protein

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Acr_ID: CP026979.1|AYH34520.1|3628765_3629101_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP026979.1|AYH33243.1|3680934_3681141_+|hypothetical-protein

3680934_3681141_+

68 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|69	0.5230769230769231	0.9705882352941176	0.9420289855072463

3624957-3705274

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP026979_7	TypeI-F	7.4\|3956381\|33\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956381-3956413	33	3688125-3688093	0

1. spacer 7.4|3956381|33|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to CP026979 position: 3688125-3688093, mismatch: 0

ctgatgaaagccgagaaagccgagcgaaacgat	CRISPR spacer
ctgatgaaagccgagaaagccgagcgaaacgat	Protospacer
*********************************

CP026979.1|AYH34520.1|3628765_3629101_+|hypothetical-protein

3628765_3629101_+

111 aa aa

3624957-3705274

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP026979_7	TypeI-F	7.4\|3956381\|33\|CP026979\|PILER-CR,CRISPRCasFinder,CRT	3956381-3956413	33	3688125-3688093	0

1. spacer 7.4|3956381|33|CP026979|PILER-CR,CRISPRCasFinder,CRT matches to CP026979 position: 3688125-3688093, mismatch: 0

ctgatgaaagccgagaaagccgagcgaaacgat	CRISPR spacer
ctgatgaaagccgagaaagccgagcgaaacgat	Protospacer
*********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP026979

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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