CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP031933	Lactobacillus sp. HBUAS52074 chromosome, complete genome	1 crisprs	cas9,cas1,cas2,csn2,cas3,DEDDh,csa3,DinG,cas14j,WYL	0	5	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031933_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031933_1

650179-650849

TypeII

Consensus_repeat	Method
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	PILER-CR
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	CRISPRCasFinder
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	CRT

9 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of CP031933_1

>merge|CP031933|1|650179-650849|PILER-CR,CRISPRCasFinder,CRT
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAACGATGAGCGGCTTATTGATGTAACCAAAAAGGCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAACCAAGCATGGTTGAAAATATCAATCCAATCTGCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAACTTCATATGAGTGTCGCAGCTAACAGAGACAGCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAACGATCAGGAGTACCGTCAGTCGTCTTAGTATGCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAACTTGGTGGAGTGTCGGCGGAAGGTGGCATCAGCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAACTATCCAAATGGATTTGAACTAACCGCCTGGGCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAACCCTTATCATCAAACTGTATATCGAAGTTGGGCTTTTGTACTTTCAAAGATTTAGAAACAGTAAAACCATCGCTACCAGTGCCCTTTGCAAACATTGGCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAACAAAATTAATGATAATCATTTGATTTCTGATGTTTTTGTACCCGACGGTTTGAGTTCGCTTGTATCGCTCGTGTTTTTGTACCTTCAAAAATTTAGAAACAATGAAAA

>CP031933|1|1|650179-650676|PILER-CR
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	GATGAGCGGCTTATTGATGTAACCAAAAAG
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	CAAGCATGGTTGAAAATATCAATCCAATCT
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	TTCATATGAGTGTCGCAGCTAACAGAGACA
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	GATCAGGAGTACCGTCAGTCGTCTTAGTAT
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	TTGGTGGAGTGTCGGCGGAAGGTGGCATCA
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	TATCCAAATGGATTTGAACTAACCGCCTGG
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	CCTTATCATCAAACTGTATATCGAAGTTGG
GCTTTTGTACTTTCAAAGATTTAGAAACAGTAAAAC

>CP031933|1|1|650179-650849|CRISPRCasFinder
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	GATGAGCGGCTTATTGATGTAACCAAAAAG
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	CAAGCATGGTTGAAAATATCAATCCAATCT
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	TTCATATGAGTGTCGCAGCTAACAGAGACA
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	GATCAGGAGTACCGTCAGTCGTCTTAGTAT
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	TTGGTGGAGTGTCGGCGGAAGGTGGCATCA
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	TATCCAAATGGATTTGAACTAACCGCCTGG
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	CCTTATCATCAAACTGTATATCGAAGTTGG
GCTTTTGTACTTTCAAAGATTTAGAAACAGTAAAAC	CATCGCTACCAGTGCCCTTTGCAAACATTG
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	AAAATTAATGATAATCATTTGATTTCTGATGTTTTTGTACCCGACGGTTTGAGTTCGCTTGTATCGCTCGT
GTTTTTGTACCTTCAAAAATTTAGAAACAATGAAAA

>CP031933|1|1|650179-650742|CRT
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	GATGAGCGGCTTATTGATGTAACCAAAAAG
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	CAAGCATGGTTGAAAATATCAATCCAATCT
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	TTCATATGAGTGTCGCAGCTAACAGAGACA
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	GATCAGGAGTACCGTCAGTCGTCTTAGTAT
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	TTGGTGGAGTGTCGGCGGAAGGTGGCATCA
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	TATCCAAATGGATTTGAACTAACCGCCTGG
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC	CCTTATCATCAAACTGTATATCGAAGTTGG
GCTTTTGTACTTTCAAAGATTTAGAAACAGTAAAAC	CATCGCTACCAGTGCCCTTTGCAAACATTG
GCTTTTGTACCTTCAAAGATTTAGAAACAGTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP031933.1\|AYE39463.1\|660466_661018_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
CP031933.1\|AYE37683.1\|641691_642414_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
CP031933.1\|AYE37686.1\|644318_647714_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
CP031933.1\|AYE37689.1\|650978_651245_+\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|178923
CP031933.1\|AYE37684.1\|642388_642928_+\|ribosomal-protein-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
CP031933.1\|AYE37693.1\|657007_657658_+\|redox-sensing-transcriptional-repressor-Rex	unknown	unknown	gnl\|CDD\|235486
CP031933.1\|AYE37680.1\|639030_639900_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
CP031933.1\|AYE37696.1\|661235_661520_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
CP031933.1\|AYE37692.1\|654957_656871_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223562
CP031933.1\|AYE37691.1\|652718_653438_+\|hypothetical-protein	unknown	unknown	unknown
CP031933.1\|AYE37690.1\|651254_652598_+\|PFL-family-protein	unknown	unknown	gnl\|CDD\|180009
CP031933.1\|AYE37682.1\|640862_641384_+\|folate-family-ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|275311
CP031933.1\|AYE37695.1\|659094_660375_+\|glutamate/aspartate:proton-symporter-GltP	unknown	unknown	gnl\|CDD\|183075
CP031933.1\|AYE37687.1\|647901_648813_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
CP031933.1\|AYE37688.1\|649123_650152_+\|hypothetical-protein	csn2	cd12217_csn2_CAS-II-A	gnl\|CDD\|213410
CP031933.1\|AYE37685.1\|642938_643961_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
CP031933.1\|AYE37694.1\|657678_658647_+\|mannose-6-phosphate-isomerase,-class-I	unknown	unknown	gnl\|CDD\|224399
CP031933.1\|AYE39462.1\|648824_649133_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
CP031933.1\|AYE37681.1\|639902_640646_+\|acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
CP031933.1\|AYE37697.1\|661577_663209_+\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573

Protein	Function_ID	Function_description	E-value
CP031933.1\|AYE39463.1\|660466_661018_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.83892e-12
CP031933.1\|AYE37683.1\|641691_642414_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	5.94171e-60
CP031933.1\|AYE37686.1\|644318_647714_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	6.71961e-130
CP031933.1\|AYE37689.1\|650978_651245_+\|ACT-domain-containing-protein	gnl\|CDD\|178923	PRK00194, PRK00194, ACT domain-containing protein.	1.57183e-38
CP031933.1\|AYE37684.1\|642388_642928_+\|ribosomal-protein-alanine-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	5.27471e-27
CP031933.1\|AYE37693.1\|657007_657658_+\|redox-sensing-transcriptional-repressor-Rex	gnl\|CDD\|235486	PRK05472, PRK05472, redox-sensing transcriptional repressor Rex; Provisional.	1.1962e-109
CP031933.1\|AYE37680.1\|639030_639900_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	4.01691e-128
CP031933.1\|AYE37692.1\|654957_656871_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
CP031933.1\|AYE37696.1\|661235_661520_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.72172e-44
CP031933.1\|AYE37690.1\|651254_652598_+\|PFL-family-protein	gnl\|CDD\|180009	PRK05313, PRK05313, hypothetical protein; Provisional.	0
CP031933.1\|AYE37682.1\|640862_641384_+\|folate-family-ECF-transporter-S-component	gnl\|CDD\|275311	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family. Members of this model are the multiple membrane-spanning S (specificity) component of ECF (energy coupling factor) type uptake transporters. All seed members were found in the vicinity of the bifunctional enzyme folC, involved in making active cofactor from imported folate. However, some species have multiple members of this family, suggesting some diversity of function. [Transport and binding proteins, Unknown substrate].	7.164e-24
CP031933.1\|AYE37695.1\|659094_660375_+\|glutamate/aspartate:proton-symporter-GltP	gnl\|CDD\|183075	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.	3.56945e-164
CP031933.1\|AYE37687.1\|647901_648813_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.79182e-106
CP031933.1\|AYE37688.1\|649123_650152_+\|hypothetical-protein	gnl\|CDD\|213410	cd12217, Stu0660_Csn2, Stu0660-like CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. This family of Csn2 proteins includes Stu0660, the proteins are larger than other (canonical) Csn2 proteins as they have an additional alpha-helical C-terminal domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.13466e-63
CP031933.1\|AYE37685.1\|642938_643961_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
CP031933.1\|AYE37694.1\|657678_658647_+\|mannose-6-phosphate-isomerase,-class-I	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	5.99767e-110
CP031933.1\|AYE39462.1\|648824_649133_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	7.89185e-27
CP031933.1\|AYE37681.1\|639902_640646_+\|acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	9.98726e-50
CP031933.1\|AYE37697.1\|661577_663209_+\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0

>CP031933.1|AYE37688.1|649123_650152_+|hypothetical-protein
MYMILKIELENQKFLDIEFDDAAYISGPNQKQLWKIFRSLYYYFNKNPKLTENIYGDNKIELILDGHPLSVKNNDFYFINNRDSIYGQMVYKKDSLLFDLLNSLSDDLGIDRSIEKINDEHLQLEITVQKLLDVYSNNLRVEFQDLSYFDFLKNNLLMGYESDDDSYPLEFMDTETLLDEYLNFLEFKLKDNGNPVWLVLYNLDNFISLEDKHSFLIKVKRLMTNYDLKLLYLGNTLNSVPIEISDIDKIVVSADNFHQLLPCEEFLHSVKLHYPNEFNLTETEFSKAVGRIAPFIGSSEKSFISSKDLVLLKVVNDILGYETSFDLKNQLLTKAETEFLKD
>CP031933.1|AYE39462.1|648824_649133_+|CRISPR-associated-endonuclease-Cas2
MRMLCMFDLPVDTPNEKRQYRIFRKELLRNGFTMLQYSVYYRAIQNRAGGKKYEKALKQYLPIHGEVRLISVSEKQFNDMQILVGSRSKQEELVGSKELVCI
>CP031933.1|AYE37687.1|647901_648813_+|type-II-CRISPR-associated-endonuclease-Cas1
MGWRIVHVKEGDVLRLRLDSLEVLKKENKVYIPLSDITMIVLEGNRTTITTKLLSSLSQNNVGLVICDDKYLPVGIYLPYGQYHHYSKRVIRQAEWTKEQKGLIWQSVIKQKMTNQVDYARFAGVDEDRLNLMQDLISNLLIGDTTNREGPVAKVYFDSLYGKSFTRDDENLINGAMNFGYAILRSCMARIVVGNGLVTMLGIFHHNEFNSFNLVDDLMEPFRPLMDYWVNEYVINDKQDYLSYEARLKIIEFMSQKIKIQNKKMTIDNAMQEYVASFISAIDEQDPALLVDIKLENLIGEES
>CP031933.1|AYE37686.1|644318_647714_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MVDRISLGLDIGVASVGFSVLNIDQGKVVELGARLFNAKVAEGNQDRRSMRGSRRLLNRKKQRRQDTAKLFEKFGLIANYDKENFSELFDNNENPYELRVKGLTEQLTKNELAESLYQIVKRRGISYDLKDADFEDGGTDYSSSLRLNNQALENKTPAEIQLQRLNEFGAVRGKVVVGDDLDSQKVLLNVFPTKAYEKEAQRIIAMQKKFYPDILTDEFEKQYYSILTRKRDYFVGPGNEKSRTDYGIYKTDGRTLDNLFEELIGHDKVYPDELRASAASYTAQLFNVLNDLNNLRILSYEDEKLTQTDKETIINELKNNVTTVNMMNLIKKVTGCEKDDIKGYRTNDKDKPEISSMAIYRKVHKEFLKADVDITKWPIEFINKLSFILTLNTENGEIRKQIVNRLKPDFDFVDDELIQIIIDHKASFDITTNNKWHRFSIKTMNKLVPIMMERPIEQMTLLNELGLVRKDSKRFADNKYLPYREIAQDIYNPVAAKAVREALKIVNAVLKKYGHIDYLVVEMPRDKNLDEEKKQIEDFQKQNKAAKDSAYQAFVSSVGDEKAVKIALSKSRKLQMAIRLWYQQNEIDPYNGKTIEATDLLKNPDKFQIDHIIPQSISFDDGINNKTLCFASMNQVKDKKTPYEFLNEGHGQGWAKFKATVVANPRFNKNKRQNYLFAENVSDIETRKRFISRNLVDTRYSSRVVLNSLQEFFSEKNDGTKVTVIRGKFTSNMRKHWDINKTRETFHHHAIDASIIAATPFLNMWKKGSSIFPNKVGEESIDIQTGEILDDKRFDKVMYKEPYEGFLDDVRNADGRIKFSHQVDKKMNRKVSDATIYSTRMGQLAKDKKAAEYVVAKVKDIYSVDGYKKFKKVFDKDKTKFLLAKFDARSFSELEKVLDMYPDKIDQTQNNGKVKSVDISPFELYRRDHGMIKKYSKKNNGPVIKQLKYLDKKLGSHIDITPNNANGKHVVLQSLNPWRTDVYLNHETGEYEIMGIKYADLKFQKGGVYGIKMDKYLEIKKREKVADDSEFMFTLYRKDRIKIKSKDSLEKSVELLFWSRSKLDHKWNAELKPIDRYVFSEGTIPIFGNTKTQTIKRLVPKNCKIWKVNTNILGDPYYIEKESDYPQDILD
>CP031933.1|AYE37685.1|642938_643961_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MEKDTLILSFESSCDETSVAVIKNGKEILANIIATQIKSHQRFGGVVPEVASRHHVEEVTKCINLALAKAQVGYEDLDAVAVTYGPGLVGSLLIGIMAAKTVAFAHDLPLIKVNHLAGHIYSANFVTDLQYPFMSLLVSGGHTELVLVTAPGVFHTLGDTRDDAVGEAYDKIGRVLGINYPAGKKVDEMAAVGNDTFDFPRAMVQEDNLDFSFSGLKSAFINTVHHADQVHEELNKDDLAASFQGAVLDILTNKTFRALKLHPVKQLIVGGGVSANQGLRKRLAAEIEKRHMDMELVFPPLRLCGDNAAMIGAMAQIQYDKGDFADLDLNADPSLDFDME
>CP031933.1|AYE37684.1|642388_642928_+|ribosomal-protein-alanine-N-acetyltransferase
MFPMLKKFKQLFSNKTVKFDFEEQNVSIEDRKFILRKALPKDAIQYMKVQETIYPIPVPWPIDIVQMEIDNKKALYLSLVEKNRVVAFTGLSLGDKAEAHITNLAVDADYQNLGIGHLLLNQVFDYCRDRDYAKISLEVDVTNEAALALYDAFGFKVRTVHKKYYFRNHHDAWEMMVDL
>CP031933.1|AYE37683.1|641691_642414_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MKILAFDTSNKPLSVAVVVDGKVLAHLESTEKKTHSITILPDIKEALQEANLTVNDIDLIAVAKGPGSYTGVRIAVTVAKTLADTLNKKLVGVSSLELLAANGDKAHILVPLMDARNDNAFAGVYQNSRDKFVSIMGDHHTSMAKLFDALKEYDADQLEFINATPRLQELIQNQFPSAKIITAENSLPDAAKLAKLAESKKPVTDIDDFVPTYLRLTQAEHDWYAKGHKDDGNVSYVEEV
>CP031933.1|AYE37682.1|640862_641384_+|folate-family-ECF-transporter-S-component
MNSRSTVISVQEVTWMALLIALQMVLAKLSVGSNTLKVGFSFIAIGLLGYYFGPFKAAIANVLADVISNLVMPSSGGFFIGFTFSALVAGVIYGYMLYNHKVTVWRTFLTVLLITVIVNTGLNTLWIHMMTNLPYVTLLVPRLAKEAFSLVYQTGLLYIVLKWIDNSKFNKIG
>CP031933.1|AYE37681.1|639902_640646_+|acyl-ACP-thioesterase
MAEKQTFAIEMEVPYYFVNFSGDMRLSALIDVMLLTSEKQLHQADVDSAEMVKNKGLGWVVVQYHMDIKQMPKLGQKLKIMTQATSYNKYFFYRDFWIEDESGETIVKAESAFVLIDIEERKIVSASDRLDDVFGAEETKKLKRFNRLKVPEDYDFEQPQHIGYYNIDVNKHVNNSYYFDWMVDTLDMDFIADHTLTSMDIKYDKELNMDSQPISYAKLDNTNNKSIHWIKNGDVLNVIAQFKWKNK
>CP031933.1|AYE37680.1|639030_639900_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MKEQRSFVDNSKGCLFLVPTPIGNLEDMTFRAVNTLKEADLVAAEDTRNTKNLLNHFEIPTELISFHEHNTAQRIPELIEKMNAGLKIAQVSDAGAPSISDPGKELVKAAIKEDIPVVPLPGATASVTALIASGIAPQPFYFYGFLPRKGKERTEALSDLSKRAETTIVYESPYRVKKTIQDLMDNFGADRQITLARELTKIHEAFLRGSLQQVAEYYQDNDPKGEYVLIIAGKPVEATQAESDDDLVKSVDDLIAQGQKPNKAIKEVAAQNGLKKQDVYNLYHGIGEE
>CP031933.1|AYE37689.1|650978_651245_+|ACT-domain-containing-protein
MKAILTVLGHDQVGIVAKVSTKLAELDVNIIDISQTLMHDNFTMMMMVTWDDATNFDTVKNSLSELGKASGLDIRIQREEIFDAIQKL
>CP031933.1|AYE37690.1|651254_652598_+|PFL-family-protein
METNSILETIQMISEEKLDIRTITMGISLFDCIDSDGEKARQKIYNKLMTKAKDLVKVADKIESEYGIPIVNKRISVTPISMIAAASGDKDYVAYAKIMDKAATELGVDLIGGFSALVQKGYQSGDVKLIQSLPQALTETSRVCGSVNVGSTRSGINLDAVGQMGQVVKDLAKVDPVNCMSLVIFANAVEDNPFMAGAFHGVGEADCVINVGISGPGVVKSALEHVKGQPIDVVSETIKKTTFKVTRMGQFVGDLASKALNVPFGIVDLSLAPTPNEGDSVAEILEEIGLESVGAPGTTAALALLNDAVKKGGVMACEHVGGLSGAFIPVSEDAEMIRAVTAGRLNIEKLEAMTAVCSVGLDMIAIPGDTTAETISGMIADEAAIGVINNKTTAVRIIPATGKKVGDVVEFGGLFGKAPVMAVNTNSPADFIHRGGRIPAPIHSFKN
>CP031933.1|AYE37691.1|652718_653438_+|hypothetical-protein
MKTRTKISYIILKYDDQTDNIYTKTSNNENHAYEVPAFDYVQKRESTLVDAKNYIIEKFVDFNTFIDENHVFIPFIDVTFENDIKVFTYVAVIFESNQDMFSSLNYESWHRVKYDHHKQYWNLTWGNGLTDPVDFKFANDAITDYTANPRDRDELTFNNVMHFVTEQTNDFPILGLMSGNKFTMKQVFHYQDLLGIETLKAGNNATFENQYSDSIQPIVDDRLTTSYKIKSNYLKKISL
>CP031933.1|AYE37692.1|654957_656871_-|ABC-transporter-ATP-binding-protein
MILLQAQNITKNFGTKKLFSNVSFEIQDNSRIGLVGRNGVGKSTLLKIISDQESYNSGNIALKKDTNIGYLAQDSGLDSDNQIFLEMEKVFDYLKEQEKKMHALEEKLANPNVDDYDAILKQYDQLQNTFRQENGYGYQSEIRSVLKGFGFDEDVWKNQISTLSGGERSRLAMAKMLLEHHDILLLDEPTNHLDINTVEWLESYLKGYRGALVIVSHDQYFLDKVTTEIVEINQHSSTHYSGNYSFYLQEKKKNQEVAWKHYEEQQAEIKKTEEYIQKNIVRASTTKMAQSRRKKLEHMDVLERPGSDQGSVHFSFDIDKESGNDVLLVKDAAIGYDNEIMSEPINLDVKKGERVGIIGPNGIGKSTFLKSILGKIPLIKGTSQFGANVQVGYYDQNLKGLDPKKDVLHEIWDRYPRLDEQIIRKKLGAFLFSGDDVLKPVAGLSGGEKARLTLTKLSMENNNFLVMDEPTNHLDIDSKEVLEDALKSFAGTVLFVSHDRYLLNTLASRIVDIGSHGSTIYLGDYDYYLEKTTDKPTEEETEKASTVSEKKVEYQQSKEQQKQERKLRRQVEDLESQLAELEAKNTAIQKEMTKEENLTSYSKLADLQKELDENKAQQDKIEEQWTEKSIELEDFNS
>CP031933.1|AYE37693.1|657007_657658_+|redox-sensing-transcriptional-repressor-Rex
MTKTTVPNATIKRLPIYYRYFQFLKDEGTKKISSGELSEGVKIDSATIRRDFSYLGALGKRGYGYDVNDLVVFFKKLLNQDKRTNVALVGVGNLGNALLNYNFSRTNNVRIAAAFDINKEIVGTVKSGVPVYDISELKEQLNLQQIDVCILTVSSNAAQTTADLLADAGVRGILNFTPVIINVPNSIRVHYVDLANELQTLIFFLDRDKSMNEETN
>CP031933.1|AYE37694.1|657678_658647_+|mannose-6-phosphate-isomerase,-class-I
MSEPLFLKPVFHEKIWGGRKLETKFGYNIPDGTIGECWAISGHPHGRSEVENGEFAGQYVDDLWKNHSELFGNPKGKVFPLLTKILDAEASLSVQVHPDNAYAAEHEHELGKTECWYIIDAEPGSYLIYGHNAKNKAELDQMIESGDWDHLLRKVPVKTGDFYYVPSGTVHALNKGIMALETQQSSDTTYRLYDYDRVDKTTGKKRDLHIKQSEDTITVPHKDPKLNIESKQVGQNKFTTFVQPPVSPFFSVYHWEIKEPVELHHQIGKYTLISVLSGEGKITVDGKDYDLKKGIHLIVPATVDAWKLSGDLDIIASESGEE
>CP031933.1|AYE37695.1|659094_660375_+|glutamate/aspartate:proton-symporter-GltP
MQRQRFFRVSLGWQIIIGLILGIILGQVFYQNKVAIQVMQNIGTMFISMIQMIVLPIVISCLTVGIANMGDIKKLGRIGLKTLIYFEIMTTLAIIIGIVVANVTHPGTYIDIHSLKGSDISQYTATAKTAKHSGIWSILMSIIPTNIFESLGKGDMLPIIFFSVLFGLGTASIGKQGKIITEVLNAVANVMFKVTNWVMRLAPIGVCALIGVTVGEMGFNSLKPLGLFILIAYATMAFFVFVVMAAVGHLFHVRFYELFRIIENEVTLAFTTASSEAALPKMMEKMQDYGSSKGIVSFVIPTGYTFNLDGSAIYQSLAALFLAQAYNIHLTIGQQITLVVVLMLTSKGMAGVPGASFVVLLATVSTIGVPMQGLTFIAGIDRLVDMGRTAVNVVGNSLATVIIAKSEKEFDEDKREKYVASYTRGD
>CP031933.1|AYE39463.1|660466_661018_-|CPBP-family-intramembrane-metalloprotease
MFSITGSAYFITVTIAALIVTGLMIYLVKQSGPLEFEKSSDLNHDLQWIILGTVGALVVQFGIGFADKLLFHASTDSQNTLSLLLMVKEYPYYFIYVMIAAPIMEEIIFRRVFFANLIKPTNIYIAAIISALLFAFMHQDTRFLVYVFMGLWFSFVYYKSENIYVSAGSHILMNAIVLTLGII
>CP031933.1|AYE37696.1|661235_661520_+|co-chaperone-GroES
MLKPLGDRVIVTVDKEEEKTVGGIVLANNAKEKPQTAEVVAVGDGLVADNGTKLPMSIKKGDKILFDKYAGSTVKYEDNEYLILHEKDVMAIVD
>CP031933.1|AYE37697.1|661577_663209_+|chaperonin-GroEL
MAKEIKFSEDARSKMLDGVNKLADTVKTTIGPKGRNVVLEKSYGSPEITNDGVTIAKSIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVKEGMKNVTAGANPVGIRTGIEKATDAAVDELHKISHKVSGKNDIAQVASVSSASEETGKLIADAMEKVGNDGVITIEESKGIDTTLDVVEGMQFDRGYISQYMVTDNDKMEADLDNPYILITDKKISNIQDILPLLQKIVQQGKSLLIIADDIEGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAQLEDIATLTGGTVITSDLGLELKDTTMDQLGQAGKVTVTKDNTTIVEGSGDKAAIQERVDLIKKQISETTSDFDKDKLQERLAKLAGGVAVVKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALMNVLGKVTALKAEGDIQTGINIVARALEEPLRQIAENAGMEGSVIVEHIKNEKNEVGYNAATDKWENMVDAGIIDPTKVTRSALQNAASVASLLLTTEAVVADKPDKNAPAAPAANPAAGGMGGMM

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031933_1	1.1\|650215\|30\|CP031933\|PILER-CR,CRISPRCasFinder,CRT	650215-650244	30	MN693783	Marine virus AFVG_250M207, complete genome	27274-27303	5	0.833
CP031933_1	1.1\|650215\|30\|CP031933\|PILER-CR,CRISPRCasFinder,CRT	650215-650244	30	MN694730	Marine virus AFVG_250M981, complete genome	6938-6967	5	0.833
CP031933_1	1.8\|650677\|30\|CP031933\|CRISPRCasFinder,CRT	650677-650706	30	MN855786	Bacteriophage sp. isolate 70, complete genome	9410-9439	7	0.767
CP031933_1	1.1\|650215\|30\|CP031933\|PILER-CR,CRISPRCasFinder,CRT	650215-650244	30	NZ_CP026699	Citrobacter koseri strain AR_0025 plasmid unitig_3_pilon, complete sequence	25181-25210	8	0.733
CP031933_1	1.2\|650281\|30\|CP031933\|PILER-CR,CRISPRCasFinder,CRT	650281-650310	30	NZ_LR134460	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence	69114-69143	8	0.733
CP031933_1	1.2\|650281\|30\|CP031933\|PILER-CR,CRISPRCasFinder,CRT	650281-650310	30	NZ_CP045419	Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence	308886-308915	8	0.733
CP031933_1	1.5\|650479\|30\|CP031933\|PILER-CR,CRISPRCasFinder,CRT	650479-650508	30	NZ_CP054026	Rhizobium sp. JKLM12A2 plasmid pPR12A205, complete sequence	131041-131070	8	0.733
CP031933_1	1.5\|650479\|30\|CP031933\|PILER-CR,CRISPRCasFinder,CRT	650479-650508	30	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	257085-257114	8	0.733
CP031933_1	1.7\|650611\|30\|CP031933\|PILER-CR,CRISPRCasFinder,CRT	650611-650640	30	AP019561	Staphylococcus phage SP197 DNA, complete genome	32875-32904	9	0.7
CP031933_1	1.7\|650611\|30\|CP031933\|PILER-CR,CRISPRCasFinder,CRT	650611-650640	30	MF428481	Staphylococcus phage SN8, complete genome	23903-23932	9	0.7
CP031933_1	1.7\|650611\|30\|CP031933\|PILER-CR,CRISPRCasFinder,CRT	650611-650640	30	MF428478	Staphylococcus phage SN13, complete genome	24625-24654	9	0.7
CP031933_1	1.7\|650611\|30\|CP031933\|PILER-CR,CRISPRCasFinder,CRT	650611-650640	30	MF428479	Staphylococcus phage SN11, complete genome	23903-23932	9	0.7
CP031933_1	1.7\|650611\|30\|CP031933\|PILER-CR,CRISPRCasFinder,CRT	650611-650640	30	KX827370	Staphylococcus phage SpT252, complete genome	12714-12743	9	0.7
CP031933_1	1.7\|650611\|30\|CP031933\|PILER-CR,CRISPRCasFinder,CRT	650611-650640	30	KX827368	Staphylococcus phage SpT5, complete genome	12715-12744	9	0.7
CP031933_1	1.7\|650611\|30\|CP031933\|PILER-CR,CRISPRCasFinder,CRT	650611-650640	30	MF428480	Staphylococcus phage SN10, complete genome	23903-23932	9	0.7
CP031933_1	1.7\|650611\|30\|CP031933\|PILER-CR,CRISPRCasFinder,CRT	650611-650640	30	MN028536	Staphylococcus phage vB_SpsM_WIS42, complete genome	24063-24092	9	0.7

1. spacer 1.1|650215|30|CP031933|PILER-CR,CRISPRCasFinder,CRT matches to MN693783 (Marine virus AFVG_250M207, complete genome) position: , mismatch: 5, identity: 0.833

gatgagcggcttattgatgtaaccaaaaag	CRISPR spacer
gatgaacggcttattgatgtaatcaaggaa	Protospacer
*****.****************.***..*.

2. spacer 1.1|650215|30|CP031933|PILER-CR,CRISPRCasFinder,CRT matches to MN694730 (Marine virus AFVG_250M981, complete genome) position: , mismatch: 5, identity: 0.833

gatgagcggcttattgatgtaaccaaaaag	CRISPR spacer
gatgaacggcttattgatgtaataaaggag	Protospacer
*****.****************. **..**

3. spacer 1.8|650677|30|CP031933|CRISPRCasFinder,CRT matches to MN855786 (Bacteriophage sp. isolate 70, complete genome) position: , mismatch: 7, identity: 0.767

catcgctaccagtgccctttgcaaacattg	CRISPR spacer
aacttccacctgtgccgtttgcaaacattg	Protospacer
 *.. *.*** ***** *************

4. spacer 1.1|650215|30|CP031933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026699 (Citrobacter koseri strain AR_0025 plasmid unitig_3_pilon, complete sequence) position: , mismatch: 8, identity: 0.733

gatgagcggcttattgatgtaaccaaaaag	CRISPR spacer
catgagcgtgttattgatgtaaccacgttc	Protospacer
 *******  *************** .

5. spacer 1.2|650281|30|CP031933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134460 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence) position: , mismatch: 8, identity: 0.733

caagcatggttgaaaatatcaatccaatct	CRISPR spacer
caagcatggttgaaaaagtcaatcgctcgg	Protospacer
**************** .******   .

6. spacer 1.2|650281|30|CP031933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045419 (Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence) position: , mismatch: 8, identity: 0.733

caagcatggttgaaaatatcaatccaatct	CRISPR spacer
aaagcatgtttgataatatcaatctcaatc	Protospacer
 ******* **** **********. * ..

7. spacer 1.5|650479|30|CP031933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054026 (Rhizobium sp. JKLM12A2 plasmid pPR12A205, complete sequence) position: , mismatch: 8, identity: 0.733

ttggtggagtgtcggcggaaggtggcatca	CRISPR spacer
tccatggagtctcggcggatggtggcaagc	Protospacer
*. .****** ******** *******

8. spacer 1.5|650479|30|CP031933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 8, identity: 0.733

ttggtggagtgtcggcggaaggtggcatca	CRISPR spacer
tccatggagtctcggcggatggtggcaagc	Protospacer
*. .****** ******** *******

9. spacer 1.7|650611|30|CP031933|PILER-CR,CRISPRCasFinder,CRT matches to AP019561 (Staphylococcus phage SP197 DNA, complete genome) position: , mismatch: 9, identity: 0.7

ccttatcatcaaactgtatatcgaagttgg	CRISPR spacer
tagtatcttcaaactttatatcgaagaaat	Protospacer
.  **** ******* **********  .

10. spacer 1.7|650611|30|CP031933|PILER-CR,CRISPRCasFinder,CRT matches to MF428481 (Staphylococcus phage SN8, complete genome) position: , mismatch: 9, identity: 0.7

ccttatcatcaaactgtatatcgaagttgg	CRISPR spacer
tagtatcttcaaactttatatcgaagaaat	Protospacer
.  **** ******* **********  .

11. spacer 1.7|650611|30|CP031933|PILER-CR,CRISPRCasFinder,CRT matches to MF428478 (Staphylococcus phage SN13, complete genome) position: , mismatch: 9, identity: 0.7

ccttatcatcaaactgtatatcgaagttgg	CRISPR spacer
tagtatcttcaaactttatatcgaagaaat	Protospacer
.  **** ******* **********  .

12. spacer 1.7|650611|30|CP031933|PILER-CR,CRISPRCasFinder,CRT matches to MF428479 (Staphylococcus phage SN11, complete genome) position: , mismatch: 9, identity: 0.7

ccttatcatcaaactgtatatcgaagttgg	CRISPR spacer
tagtatcttcaaactttatatcgaagaaat	Protospacer
.  **** ******* **********  .

13. spacer 1.7|650611|30|CP031933|PILER-CR,CRISPRCasFinder,CRT matches to KX827370 (Staphylococcus phage SpT252, complete genome) position: , mismatch: 9, identity: 0.7

ccttatcatcaaactgtatatcgaagttgg	CRISPR spacer
tagtatcttcaaactttatatcgaagaaat	Protospacer
.  **** ******* **********  .

14. spacer 1.7|650611|30|CP031933|PILER-CR,CRISPRCasFinder,CRT matches to KX827368 (Staphylococcus phage SpT5, complete genome) position: , mismatch: 9, identity: 0.7

ccttatcatcaaactgtatatcgaagttgg	CRISPR spacer
tagtatcttcaaactttatatcgaagaaat	Protospacer
.  **** ******* **********  .

15. spacer 1.7|650611|30|CP031933|PILER-CR,CRISPRCasFinder,CRT matches to MF428480 (Staphylococcus phage SN10, complete genome) position: , mismatch: 9, identity: 0.7

ccttatcatcaaactgtatatcgaagttgg	CRISPR spacer
tagtatcttcaaactttatatcgaagaaat	Protospacer
.  **** ******* **********  .

16. spacer 1.7|650611|30|CP031933|PILER-CR,CRISPRCasFinder,CRT matches to MN028536 (Staphylococcus phage vB_SpsM_WIS42, complete genome) position: , mismatch: 9, identity: 0.7

ccttatcatcaaactgtatatcgaagttgg	CRISPR spacer
tagtatcttcaaactttatatcgaagaaat	Protospacer
.  **** ******* **********  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1500606 : 1505863

Lactobacillus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYE38421.1\|1500606_1501071_-	single-stranded DNA-binding protein	A0A290GHL8	Caldibacillus_phage	2.2e-40	53.9
AYE38422.1\|1501074_1501803_-	phage antirepressor Ant	A9D9L9	Lactobacillus_prophage	5.0e-60	49.2
AYE38423.1\|1501909_1502344_-	RusA family crossover junction endodeoxyribonuclease	A8YQM5	Lactobacillus_phage	2.7e-16	38.5
AYE38424.1\|1502340_1502661_-	hypothetical protein	NA	NA	NA	NA
AYE38425.1\|1502674_1503454_-	AAA family ATPase	E9LUM7	Lactobacillus_phage	4.6e-19	29.5
AYE38426.1\|1503465_1504221_-	DnaD domain protein	NA	NA	NA	NA
AYE38427.1\|1504233_1505076_-	hypothetical protein	A0A0P0IZH9	Lactobacillus_phage	2.4e-66	49.6
AYE38428.1\|1505014_1505863_-	phage recombination protein Bet	A8ATK8	Listeria_phage	1.1e-58	53.0

DBSCAN-SWA_2

1553507 : 1563507

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYE38471.1\|1553507_1555049_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	Q58MG4	Prochlorococcus_phage	1.8e-70	45.8
AYE38472.1\|1555045_1555630_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.8e-31	38.1
AYE38473.1\|1555626_1556646_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	4.3e-65	43.6
AYE38474.1\|1556657_1558064_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	1.3e-48	29.3
AYE38475.1\|1558048_1560259_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.6e-141	40.1
AYE38476.1\|1560258_1560933_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AYE38477.1\|1560932_1561181_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AYE39493.1\|1561190_1561898_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA
AYE38478.1\|1561901_1563032_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AYE38479.1\|1563024_1563507_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.6e-20	45.9

DBSCAN-SWA_3

1797452 : 1866159

Lactobacillus_phage(44.12%)

head,terminase,integrase,holin,protease,tail,portal,capsid

attL 1794512:1794531|attR 1843216:1843235

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1794512:1794531	attL	NA	NA	NA	NA
AYE38675.1\|1797452_1797887_-\|holin	holin	A0A097BY69	Enterococcus_phage	2.4e-17	36.7
AYE38676.1\|1797925_1798066_-	XkdX family protein	NA	NA	NA	NA
AYE38677.1\|1798133_1798415_-	hypothetical protein	NA	NA	NA	NA
AYE38678.1\|1798446_1798935_-	hypothetical protein	NA	NA	NA	NA
AYE38679.1\|1798947_1800159_-	hypothetical protein	NA	NA	NA	NA
AYE38680.1\|1800148_1801174_-	hypothetical protein	NA	NA	NA	NA
AYE38681.1\|1801174_1801831_-	hypothetical protein	NA	NA	NA	NA
AYE38682.1\|1801835_1802162_-	hypothetical protein	NA	NA	NA	NA
AYE38683.1\|1802161_1803082_-	hypothetical protein	A0A0M7RDS2	Lactobacillus_phage	4.5e-13	33.1
AYE38684.1\|1803074_1804388_-	hypothetical protein	A0A059T5E5	Listeria_phage	1.2e-19	30.1
AYE38685.1\|1804384_1805242_-\|tail	phage tail family protein	E9LUJ3	Lactobacillus_phage	3.5e-20	27.8
AYE38686.1\|1805234_1810310_-\|tail	phage tail tape measure protein	Q9AZS0	Lactococcus_phage	1.6e-115	40.0
AYE38687.1\|1810540_1810954_-	hypothetical protein	NA	NA	NA	NA
AYE38688.1\|1810977_1811613_-	hypothetical protein	NA	NA	NA	NA
AYE38689.1\|1811613_1811979_-	DUF806 family protein	NA	NA	NA	NA
AYE38690.1\|1811980_1812415_-	hypothetical protein	NA	NA	NA	NA
AYE38691.1\|1812401_1812755_-\|head,tail	head-tail adaptor protein	F8J1B7	Lactobacillus_phage	2.0e-09	32.2
AYE38692.1\|1812732_1813086_-\|head,tail	phage gp6-like head-tail connector protein	F8HGT2	Streptococcus_phage	6.7e-10	44.2
AYE38693.1\|1813088_1814324_-\|capsid	phage major capsid protein	B4XYP6	Lactobacillus_phage	6.1e-82	44.0
AYE38694.1\|1814292_1814967_-\|head,protease	HK97 family phage prohead protease	B8R651	Lactobacillus_phage	8.9e-35	46.7
AYE38695.1\|1814881_1815916_-\|portal	phage portal protein	A0A286QMI7	Streptococcus_phage	3.9e-58	38.6
AYE38696.1\|1816111_1816306_-	hypothetical protein	NA	NA	NA	NA
AYE38697.1\|1816318_1818193_-\|terminase	terminase large subunit	A0A286QQH3	Streptococcus_phage	3.9e-165	49.9
AYE38698.1\|1818196_1818685_-\|terminase	phage terminase small subunit P27 family	E3W8E9	Leuconostoc_phage	1.4e-10	34.4
AYE38699.1\|1818781_1819291_-	HNH endonuclease	A0A2I6QQZ5	Streptococcus_phage	2.6e-23	40.9
AYE38700.1\|1820121_1820574_-	hypothetical protein	NA	NA	NA	NA
AYE38701.1\|1820657_1820852_-	hypothetical protein	NA	NA	NA	NA
AYE38702.1\|1820863_1821085_-	hypothetical protein	NA	NA	NA	NA
AYE38703.1\|1821077_1821455_-	hypothetical protein	NA	NA	NA	NA
AYE38704.1\|1821447_1821927_-	DUF1642 domain-containing protein	NA	NA	NA	NA
AYE38705.1\|1821939_1822404_-	hypothetical protein	NA	NA	NA	NA
AYE38706.1\|1822407_1822833_-	hypothetical protein	NA	NA	NA	NA
AYE38707.1\|1822829_1823297_-	hypothetical protein	NA	NA	NA	NA
AYE38708.1\|1823362_1823701_-	VRR-NUC domain-containing protein	A0A2P0ZLB6	Lactobacillus_phage	6.2e-37	64.8
AYE38709.1\|1823941_1825201_-	helicase	A0A0A1EL11	Lactobacillus_phage	5.9e-133	57.8
AYE38710.1\|1825197_1825995_-	DNA primase	A0A2P0ZLB0	Lactobacillus_phage	2.9e-77	55.6
AYE38711.1\|1826064_1826571_-	DUF669 domain-containing protein	A0A1B0Y6E2	Lactobacillus_phage	2.8e-33	40.8
AYE38712.1\|1826573_1827338_-	NTP-binding protein	A0A1B0YEB5	Lactobacillus_phage	6.4e-82	62.1
AYE38713.1\|1827334_1828588_-	DEAD/DEAH box helicase	A0A0A1ENT0	Lactobacillus_phage	2.8e-151	64.3
AYE38714.1\|1828709_1829189_-	hypothetical protein	R4IBM0	Listeria_phage	1.1e-26	46.5
AYE38715.1\|1829167_1829512_-	hypothetical protein	NA	NA	NA	NA
AYE38716.1\|1829756_1830011_-	hypothetical protein	NA	NA	NA	NA
AYE38717.1\|1830174_1830375_-	hypothetical protein	NA	NA	NA	NA
AYE38718.1\|1830540_1830801_-	hypothetical protein	NA	NA	NA	NA
AYE38719.1\|1830862_1831063_+	hypothetical protein	NA	NA	NA	NA
AYE38720.1\|1831031_1831262_-	hypothetical protein	NA	NA	NA	NA
AYE38721.1\|1831298_1832093_-	hypothetical protein	Q9T1J2	Lactobacillus_phage	8.8e-50	69.0
AYE38722.1\|1832111_1832315_-	XRE family transcriptional regulator	NA	NA	NA	NA
AYE38723.1\|1832374_1832827_+	hypothetical protein	NA	NA	NA	NA
AYE38724.1\|1832929_1833238_+	hypothetical protein	NA	NA	NA	NA
AYE38725.1\|1833218_1833473_-	hypothetical protein	NA	NA	NA	NA
AYE38726.1\|1833728_1834064_+	XRE family transcriptional regulator	A0A1B0Y3N1	Lactobacillus_phage	1.0e-23	48.6
AYE38727.1\|1834067_1834466_+	ImmA/IrrE family metallo-endopeptidase	D6PSS8	Lactobacillus_phage	4.2e-16	37.0
AYE38728.1\|1834527_1835196_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
AYE38729.1\|1835452_1836073_-	hypothetical protein	NA	NA	NA	NA
AYE38730.1\|1836211_1837405_+\|integrase	site-specific integrase	A0A2P0ZL94	Lactobacillus_phage	5.6e-56	37.8
AYE38731.1\|1838986_1839574_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	2.5e-49	51.0
AYE38732.1\|1839993_1840767_-	ABC transporter permease	NA	NA	NA	NA
AYE38733.1\|1840785_1841721_-	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.7e-24	29.7
AYE38734.1\|1841796_1842381_+	MarR family transcriptional regulator	NA	NA	NA	NA
AYE38735.1\|1842960_1844352_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
1843216:1843235	attR	NA	NA	NA	NA
AYE38736.1\|1844739_1846461_+	hypothetical protein	NA	NA	NA	NA
AYE38737.1\|1846593_1847523_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	6.0e-50	36.8
AYE38738.1\|1847522_1848557_-	YvcK family protein	A1IMD5	Streptococcus_phage	3.2e-92	53.1
AYE38739.1\|1848543_1849458_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	7.9e-10	30.3
AYE38740.1\|1850075_1852100_+	sodium:proton antiporter	NA	NA	NA	NA
AYE38741.1\|1852152_1855011_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	2.9e-308	56.1
AYE38742.1\|1855013_1857023_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA
AYE38743.1\|1857167_1858412_-	MFS transporter	NA	NA	NA	NA
AYE38744.1\|1858427_1859717_-	alkaline phosphatase family protein	A0A1V0QG10	Shearwaterpox_virus	4.1e-12	23.3
AYE38745.1\|1860108_1861827_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	2.4e-169	51.0
AYE38746.1\|1861962_1862214_-	XRE family transcriptional regulator	G3MBD2	Bacillus_virus	8.4e-07	50.0
AYE38747.1\|1862398_1863340_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	1.0e-81	49.5
AYE38748.1\|1863404_1864220_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
AYE38749.1\|1864219_1865179_-	HPr kinase/phosphorylase	NA	NA	NA	NA
AYE38750.1\|1865144_1865336_-	hypothetical protein	NA	NA	NA	NA
AYE38751.1\|1865793_1866159_-\|holin	phage holin family protein	NA	NA	NA	NA

DBSCAN-SWA_4

2667215 : 2673891

Enterococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYE39531.1\|2667215_2667779_-	NlpC/P60 family protein	A0A0A8WIF2	Clostridium_phage	2.0e-16	40.9
AYE39405.1\|2668136_2668694_-	guanylate kinase	A0A212Q4J6	Cowpox_virus	5.7e-11	33.1
AYE39406.1\|2668778_2668988_+	DUF2187 domain-containing protein	NA	NA	NA	NA
AYE39407.1\|2669189_2669816_-	hypothetical protein	NA	NA	NA	NA
AYE39408.1\|2670085_2670316_+	glutaredoxin-like protein NrdH	X2KRY7	Enterococcus_phage	8.8e-11	43.4
AYE39409.1\|2670317_2670692_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	1.3e-11	35.0
AYE39410.1\|2670672_2672850_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	1.6e-250	59.4
AYE39411.1\|2672865_2673891_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	1.2e-120	66.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage