CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP023672	Clostridium septicum strain DSM 7534 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	0	0
CP023671	Clostridium septicum strain DSM 7534 chromosome, complete genome	4 crisprs	DEDDh,cas3,cas2,cas1,cas5,cas7,cas8b2,cas6,WYL,DinG,csx1,csa3	0	9	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP023671_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023671_1

356529-358370

Unclear

Consensus_repeat	Method
ATTTACATTCCACTAGTTAAGATAAAAC	PILER-CR
ATTTACATTCCACTAGTTAAGATAAAAC	CRISPRCasFinder
ATTTACATTCCACTAGTTAAGATAAAAC	CRT

28 spacers

cas2,cas1,cas5,cas7,cas8b2,cas6,WYL

The CRISPR arrays of CP023671_1

>merge|CP023671|1|356529-358370|PILER-CR,CRISPRCasFinder,CRT
ATTTACATTCCACTAGTTAAAATAAAACACTTCCTCCATATTTTCCCATCGTTTTTGAACTAAATTTACATTCCACTAGTTAAGATAAAACAATACTCAAATATTCTGTTTATTTCCTCTAAACTGTAATTTACATTCCACTAGTTAAGATAAAACAAGAATCCATAAAACGCTCCTTTTTAAATAAATAAAATTTACATTCCACTAGTTAAGATAAAACCTGTATACAATTCAGGATTATAAGACGCGTAAAAAGAATTTACATTCCACTAGTTAAGATAAAACAGACCAAGTTAACAAAATTTGTAGAGTATCAAACTTATTTACATTCCACTAGTTAAGATAAAACCTTGAATAACTCTATCAATCTTGAATGAGCCACCAAAATTTACATTCCACTAGTTAAGATAAAACCCGTAAACAGCCATCAGCTTTCTTGTACTTGCTATTATTTACATTCCACTAGTTAAGATAAAACACAACAACGATATATACGCTATATTAAAAAATTACCCATTTACATTCCACTAGTTAAGATAAAACAAGTCCATTCGATGCGATTGTAAAAGGTATTCGTGAATTTACATTCCACTAGTTAAGATAAAACCCCGAAAACACTTTTGTAGAAGATGAACGCTTCCTACATTTACATTCCACTAGTTAAGATAAAACAATTCTGGAGGTGATTGTTGTGATTGAAGCTTTCACATTTACATTCCACTAGTTAAGATAAAACAATGTTATGCAAACGTTACATTTGATAATTTTGATATATTTACATTCCACTAGTTAAGATAAAACGCAAAAAATTACTTATGATTCTATTAATTATCTTGCTCAATTTACATTCCACTAGTTAAGATAAAACATAAGACAGGTTCTTCTAGTTTGCGTGGTGGAATTGAATTTACATTCCACTAGTTAAGATAAAACTCGACAAAATTGGTAGCTGTAAATGATTTGCCGTGACGATTTACATTCCACTAGTTAAGATAAAACGGTGCATCATTAGCTGTATTATGAACACAAATACCTACATTTACATTCCACTAGTTAAGATAAAACTAGATATTCTAGAACTAAGCATGATTGGGTGAGAGAAATTTACATTCCACTAGTTAAGATAAAACCAAAACTCACATTCCTTGCATTTAGTGTTCATGCAAATTTACATTCCACTAGTTAAGATAAAACTAACTAATAGTATAACTGGTCTTTTTAAAGAAGTTGAATTTACATTCCACTAGTTAAGATAAAACGATTAGATAATGGGTATAATTTTACAAAGACAAGCGAATTTACATTCCACTAGTTAAGATAAAACTTTACAATTTAAATACTTTAGCAGATAATGTTGCCAAATTTACATTCCACTAGTTAAGATAAAACCAAGTTCTAACATAGCCTTAATAAATTCTTTTTTTTGATTTACATTCCACTAGTTAAGATAAAACATACTAAATATAATACATCTAGTATATATGCACTTTATTTACATTCCACTAGTTAAGATAAAACGCTATAGATAAGATATTCCATCTACTAAAAACCCTTACATTTACATTCCACTAGTTAAGATAAAACATATAGATTTTGACACTACTTTAGAACATAAATTGTTATTTACATTCCACTAGTTAAGATAAAACTCTTTATAGCAAAGCAAGGCAAGTATAATCCTACAAATTTACATTCCACTAGTTAAGATAAAACTCTATAGCGAAGCGTAGCTAAATAAATATATCTTTATTTACATTCCACTAGTTAAGATAAAACGATATAAAATCAATATTTTATCTATTAATTTTTACAAAATTTACATTCCACTAGAGTCTGTCAATA

>CP023671|1|1|356529-358304|PILER-CR
ATTTACATTCCACTAGTTAAAATAAAAC	ACTTCCTCCATATTTTCCCATCGTTTTTGAACTAA
ATTTACATTCCACTAGTTAAGATAAAAC	AATACTCAAATATTCTGTTTATTTCCTCTAAACTGTA
ATTTACATTCCACTAGTTAAGATAAAAC	AAGAATCCATAAAACGCTCCTTTTTAAATAAATAAA
ATTTACATTCCACTAGTTAAGATAAAAC	CTGTATACAATTCAGGATTATAAGACGCGTAAAAAGA
ATTTACATTCCACTAGTTAAGATAAAAC	AGACCAAGTTAACAAAATTTGTAGAGTATCAAACTT
ATTTACATTCCACTAGTTAAGATAAAAC	CTTGAATAACTCTATCAATCTTGAATGAGCCACCAAA
ATTTACATTCCACTAGTTAAGATAAAAC	CCGTAAACAGCCATCAGCTTTCTTGTACTTGCTATT
ATTTACATTCCACTAGTTAAGATAAAAC	ACAACAACGATATATACGCTATATTAAAAAATTACCC
ATTTACATTCCACTAGTTAAGATAAAAC	AAGTCCATTCGATGCGATTGTAAAAGGTATTCGTGA
ATTTACATTCCACTAGTTAAGATAAAAC	CCCGAAAACACTTTTGTAGAAGATGAACGCTTCCTAC
ATTTACATTCCACTAGTTAAGATAAAAC	AATTCTGGAGGTGATTGTTGTGATTGAAGCTTTCAC
ATTTACATTCCACTAGTTAAGATAAAAC	AATGTTATGCAAACGTTACATTTGATAATTTTGATAT
ATTTACATTCCACTAGTTAAGATAAAAC	GCAAAAAATTACTTATGATTCTATTAATTATCTTGCTCA
ATTTACATTCCACTAGTTAAGATAAAAC	ATAAGACAGGTTCTTCTAGTTTGCGTGGTGGAATTGA
ATTTACATTCCACTAGTTAAGATAAAAC	TCGACAAAATTGGTAGCTGTAAATGATTTGCCGTGACG
ATTTACATTCCACTAGTTAAGATAAAAC	GGTGCATCATTAGCTGTATTATGAACACAAATACCTAC
ATTTACATTCCACTAGTTAAGATAAAAC	TAGATATTCTAGAACTAAGCATGATTGGGTGAGAGAA
ATTTACATTCCACTAGTTAAGATAAAAC	CAAAACTCACATTCCTTGCATTTAGTGTTCATGCAA
ATTTACATTCCACTAGTTAAGATAAAAC	TAACTAATAGTATAACTGGTCTTTTTAAAGAAGTTGA
ATTTACATTCCACTAGTTAAGATAAAAC	GATTAGATAATGGGTATAATTTTACAAAGACAAGCGA
ATTTACATTCCACTAGTTAAGATAAAAC	TTTACAATTTAAATACTTTAGCAGATAATGTTGCCAA
ATTTACATTCCACTAGTTAAGATAAAAC	CAAGTTCTAACATAGCCTTAATAAATTCTTTTTTTTG
ATTTACATTCCACTAGTTAAGATAAAAC	ATACTAAATATAATACATCTAGTATATATGCACTTT
ATTTACATTCCACTAGTTAAGATAAAAC	GCTATAGATAAGATATTCCATCTACTAAAAACCCTTAC
ATTTACATTCCACTAGTTAAGATAAAAC	ATATAGATTTTGACACTACTTTAGAACATAAATTGTT
ATTTACATTCCACTAGTTAAGATAAAAC	TCTTTATAGCAAAGCAAGGCAAGTATAATCCTACAA
ATTTACATTCCACTAGTTAAGATAAAAC	TCTATAGCGAAGCGTAGCTAAATAAATATATCTTT
ATTTACATTCCACTAGTTAAGATAAAAC

>CP023671|1|1|356529-358370|CRISPRCasFinder
ATTTACATTCCACTAGTTAAAATAAAAC	ACTTCCTCCATATTTTCCCATCGTTTTTGAACTAA
ATTTACATTCCACTAGTTAAGATAAAAC	AATACTCAAATATTCTGTTTATTTCCTCTAAACTGTA
ATTTACATTCCACTAGTTAAGATAAAAC	AAGAATCCATAAAACGCTCCTTTTTAAATAAATAAA
ATTTACATTCCACTAGTTAAGATAAAAC	CTGTATACAATTCAGGATTATAAGACGCGTAAAAAGA
ATTTACATTCCACTAGTTAAGATAAAAC	AGACCAAGTTAACAAAATTTGTAGAGTATCAAACTT
ATTTACATTCCACTAGTTAAGATAAAAC	CTTGAATAACTCTATCAATCTTGAATGAGCCACCAAA
ATTTACATTCCACTAGTTAAGATAAAAC	CCGTAAACAGCCATCAGCTTTCTTGTACTTGCTATT
ATTTACATTCCACTAGTTAAGATAAAAC	ACAACAACGATATATACGCTATATTAAAAAATTACCC
ATTTACATTCCACTAGTTAAGATAAAAC	AAGTCCATTCGATGCGATTGTAAAAGGTATTCGTGA
ATTTACATTCCACTAGTTAAGATAAAAC	CCCGAAAACACTTTTGTAGAAGATGAACGCTTCCTAC
ATTTACATTCCACTAGTTAAGATAAAAC	AATTCTGGAGGTGATTGTTGTGATTGAAGCTTTCAC
ATTTACATTCCACTAGTTAAGATAAAAC	AATGTTATGCAAACGTTACATTTGATAATTTTGATAT
ATTTACATTCCACTAGTTAAGATAAAAC	GCAAAAAATTACTTATGATTCTATTAATTATCTTGCTCA
ATTTACATTCCACTAGTTAAGATAAAAC	ATAAGACAGGTTCTTCTAGTTTGCGTGGTGGAATTGA
ATTTACATTCCACTAGTTAAGATAAAAC	TCGACAAAATTGGTAGCTGTAAATGATTTGCCGTGACG
ATTTACATTCCACTAGTTAAGATAAAAC	GGTGCATCATTAGCTGTATTATGAACACAAATACCTAC
ATTTACATTCCACTAGTTAAGATAAAAC	TAGATATTCTAGAACTAAGCATGATTGGGTGAGAGAA
ATTTACATTCCACTAGTTAAGATAAAAC	CAAAACTCACATTCCTTGCATTTAGTGTTCATGCAA
ATTTACATTCCACTAGTTAAGATAAAAC	TAACTAATAGTATAACTGGTCTTTTTAAAGAAGTTGA
ATTTACATTCCACTAGTTAAGATAAAAC	GATTAGATAATGGGTATAATTTTACAAAGACAAGCGA
ATTTACATTCCACTAGTTAAGATAAAAC	TTTACAATTTAAATACTTTAGCAGATAATGTTGCCAA
ATTTACATTCCACTAGTTAAGATAAAAC	CAAGTTCTAACATAGCCTTAATAAATTCTTTTTTTTG
ATTTACATTCCACTAGTTAAGATAAAAC	ATACTAAATATAATACATCTAGTATATATGCACTTT
ATTTACATTCCACTAGTTAAGATAAAAC	GCTATAGATAAGATATTCCATCTACTAAAAACCCTTAC
ATTTACATTCCACTAGTTAAGATAAAAC	ATATAGATTTTGACACTACTTTAGAACATAAATTGTT
ATTTACATTCCACTAGTTAAGATAAAAC	TCTTTATAGCAAAGCAAGGCAAGTATAATCCTACAA
ATTTACATTCCACTAGTTAAGATAAAAC	TCTATAGCGAAGCGTAGCTAAATAAATATATCTTT
ATTTACATTCCACTAGTTAAGATAAAAC	GATATAAAATCAATATTTTATCTATTAATTTTTACAAA
ATTTACATTCCACTAGAGTCTGTCAATA

>CP023671|1|1|356529-358370|CRT
ATTTACATTCCACTAGTTAAAATAAAAC	ACTTCCTCCATATTTTCCCATCGTTTTTGAACTAA
ATTTACATTCCACTAGTTAAGATAAAAC	AATACTCAAATATTCTGTTTATTTCCTCTAAACTGTA
ATTTACATTCCACTAGTTAAGATAAAAC	AAGAATCCATAAAACGCTCCTTTTTAAATAAATAAA
ATTTACATTCCACTAGTTAAGATAAAAC	CTGTATACAATTCAGGATTATAAGACGCGTAAAAAGA
ATTTACATTCCACTAGTTAAGATAAAAC	AGACCAAGTTAACAAAATTTGTAGAGTATCAAACTT
ATTTACATTCCACTAGTTAAGATAAAAC	CTTGAATAACTCTATCAATCTTGAATGAGCCACCAAA
ATTTACATTCCACTAGTTAAGATAAAAC	CCGTAAACAGCCATCAGCTTTCTTGTACTTGCTATT
ATTTACATTCCACTAGTTAAGATAAAAC	ACAACAACGATATATACGCTATATTAAAAAATTACCC
ATTTACATTCCACTAGTTAAGATAAAAC	AAGTCCATTCGATGCGATTGTAAAAGGTATTCGTGA
ATTTACATTCCACTAGTTAAGATAAAAC	CCCGAAAACACTTTTGTAGAAGATGAACGCTTCCTAC
ATTTACATTCCACTAGTTAAGATAAAAC	AATTCTGGAGGTGATTGTTGTGATTGAAGCTTTCAC
ATTTACATTCCACTAGTTAAGATAAAAC	AATGTTATGCAAACGTTACATTTGATAATTTTGATAT
ATTTACATTCCACTAGTTAAGATAAAAC	GCAAAAAATTACTTATGATTCTATTAATTATCTTGCTCA
ATTTACATTCCACTAGTTAAGATAAAAC	ATAAGACAGGTTCTTCTAGTTTGCGTGGTGGAATTGA
ATTTACATTCCACTAGTTAAGATAAAAC	TCGACAAAATTGGTAGCTGTAAATGATTTGCCGTGACG
ATTTACATTCCACTAGTTAAGATAAAAC	GGTGCATCATTAGCTGTATTATGAACACAAATACCTAC
ATTTACATTCCACTAGTTAAGATAAAAC	TAGATATTCTAGAACTAAGCATGATTGGGTGAGAGAA
ATTTACATTCCACTAGTTAAGATAAAAC	CAAAACTCACATTCCTTGCATTTAGTGTTCATGCAA
ATTTACATTCCACTAGTTAAGATAAAAC	TAACTAATAGTATAACTGGTCTTTTTAAAGAAGTTGA
ATTTACATTCCACTAGTTAAGATAAAAC	GATTAGATAATGGGTATAATTTTACAAAGACAAGCGA
ATTTACATTCCACTAGTTAAGATAAAAC	TTTACAATTTAAATACTTTAGCAGATAATGTTGCCAA
ATTTACATTCCACTAGTTAAGATAAAAC	CAAGTTCTAACATAGCCTTAATAAATTCTTTTTTTTG
ATTTACATTCCACTAGTTAAGATAAAAC	ATACTAAATATAATACATCTAGTATATATGCACTTT
ATTTACATTCCACTAGTTAAGATAAAAC	GCTATAGATAAGATATTCCATCTACTAAAAACCCTTAC
ATTTACATTCCACTAGTTAAGATAAAAC	ATATAGATTTTGACACTACTTTAGAACATAAATTGTT
ATTTACATTCCACTAGTTAAGATAAAAC	TCTTTATAGCAAAGCAAGGCAAGTATAATCCTACAA
ATTTACATTCCACTAGTTAAGATAAAAC	TCTATAGCGAAGCGTAGCTAAATAAATATATCTTT
ATTTACATTCCACTAGTTAAGATAAAAC	GATATAAAATCAATATTTTATCTATTAATTTTTACAAA
ATTTACATTCCACTAGAGTCTGTCAATA

Protein	Signature genes	Signature genes Name	Protein_function
CP023671.1\|AYE33242.1\|344762_344957_+\|hypothetical-protein	unknown	unknown	unknown
CP023671.1\|AYE33257.1\|373293_374169_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
CP023671.1\|AYE33261.1\|378080_380666_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379121
CP023671.1\|AYE33256.1\|372549_373284_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|187789
CP023671.1\|AYE33246.1\|349599_351291_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|273568
CP023671.1\|AYE33253.1\|365456_366677_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
CP023671.1\|AYE33260.1\|376730_377669_-\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
CP023671.1\|AYE33245.1\|348670_349606_-\|lipoate--protein-ligase	unknown	unknown	gnl\|CDD\|179655
CP023671.1\|AYE33249.1\|352681_353092_-\|UDP-N-acetylglucosamine-pyrophosphorylase	unknown	unknown	unknown
CP023671.1\|AYE33255.1\|368735_369719_-\|subtype-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
CP023671.1\|AYE33250.1\|353406_354537_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227628
CP023671.1\|AYE33252.1\|358508_359729_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
CP023671.1\|AYE33254.1\|368470_368734_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP023671.1\|AYE33247.1\|351373_351727_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
CP023671.1\|AYE33258.1\|374168_375860_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09665_cas8b2_CAS-I-B	gnl\|CDD\|187796
CP023671.1\|AYE33251.1\|355962_356247_-\|hypothetical-protein	unknown	unknown	unknown
CP023671.1\|AYE33244.1\|346949_348626_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378333
CP023671.1\|AYE33248.1\|351798_352242_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP023671.1\|AYE33259.1\|375871_376606_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
CP023671.1\|AYE33243.1\|345197_346826_+\|aspartate-4-decarboxylase	unknown	unknown	gnl\|CDD\|163513

Protein	Function_ID	Function_description	E-value
CP023671.1\|AYE33256.1\|372549_373284_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|187789	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.51983e-23
CP023671.1\|AYE33257.1\|373293_374169_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.37257e-57
CP023671.1\|AYE33246.1\|349599_351291_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	0
CP023671.1\|AYE33253.1\|365456_366677_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.43976e-124
CP023671.1\|AYE33245.1\|348670_349606_-\|lipoate--protein-ligase	gnl\|CDD\|179655	PRK03822, lplA, lipoate-protein ligase A; Provisional.	2.2733e-75
CP023671.1\|AYE33260.1\|376730_377669_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.59056e-26
CP023671.1\|AYE33261.1\|378080_380666_-\|hypothetical-protein	gnl\|CDD\|379121	pfam13320, DUF4091, Domain of unknown function (DUF4091). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 70 amino acids in length. There is a single completely conserved residue G that may be functionally important.	4.30147e-19
CP023671.1\|AYE33250.1\|353406_354537_+\|hypothetical-protein	gnl\|CDD\|227628	COG5316, COG5316, Uncharacterized conserved protein [Function unknown].	2.22121e-27
CP023671.1\|AYE33252.1\|358508_359729_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	4.40552e-125
CP023671.1\|AYE33254.1\|368470_368734_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.3328e-25
CP023671.1\|AYE33247.1\|351373_351727_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	5.589e-25
CP023671.1\|AYE33258.1\|374168_375860_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	8.21612e-14
CP023671.1\|AYE33255.1\|368735_369719_-\|subtype-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	5.55785e-156
CP023671.1\|AYE33244.1\|346949_348626_+\|hypothetical-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	4.65653e-33
CP023671.1\|AYE33248.1\|351798_352242_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	5.11007e-19
CP023671.1\|AYE33259.1\|375871_376606_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	7.09397e-25
CP023671.1\|AYE33243.1\|345197_346826_+\|aspartate-4-decarboxylase	gnl\|CDD\|163513	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). [Energy metabolism, Amino acids and amines].	0

>CP023671.1|AYE33251.1|355962_356247_-|hypothetical-protein
MYSFILEVLFIMVPLAISLIIYMKIDKKYAITNIISLKLGIKREWMAFFCFCFTILIMLTINMINEYVINILPIVYFILGGIFTGMVVGVKYSK
>CP023671.1|AYE33250.1|353406_354537_+|hypothetical-protein
MFIKSCNNQNKELTLSIYNNNVALVNELRDLFKGKVINTIEYCDISKFIYENSVIIENVEVSQLNFNYKCCNNDKNKSENSSCNDCLSSFVNSIDIEVDSINSKNIRVYYLTAGVKWDSSYTLILNENKLSMQSWINISNKSGISYNHANLKCISGEVNFDSLSPIPYSKTSYANSEAVENPKLQPLDDYYIYNLSGKYILENNSTKRIKNFSAENIEYTKLYDFGYYNTNADILIKLNNTEDNNLGIPMPSGTVNIYASLNDSLQFLGSDSIKNTPINQELNLNIGKAFDITCERKIINYQKYDNYEFKEIELIINNSKDEDVPIKICYPIFAPWEITSTTDNYEKDSNGNPCFKVKVSANSKKRILFTYKTKIS
>CP023671.1|AYE33249.1|352681_353092_-|UDP-N-acetylglucosamine-pyrophosphorylase
MKYELTIYELGKLLKNIDSKYNISLLSKIKLSGGWMTMTGEISVIDVPTEAILLKGNNIITLKLKNNNENGSEIKITGLKDSKFVIDISATKYKEIKPGMLNLDVIKVNNNQCKLRIDEDMIFTIDTSVDKVIKCL
>CP023671.1|AYE33248.1|351798_352242_-|MarR-family-transcriptional-regulator
MFRLEECVGFITSTASKELSDEFNRRLLLKGSTRVQWIALYYIGNEKGISQKVLADKINVKESTIVRLIDRMEKEGIVKREKEETDRRVTNIFLTEKGENLKEELLPLGEKFSDDITKGIKQEHIDIFNSVLRKMVLNINMNVDNIT
>CP023671.1|AYE33247.1|351373_351727_-|carboxymuconolactone-decarboxylase-family-protein
MKKDPRQMLNDFMQGLNSVGETNGENVQAFMNLLGATYSEGKLTTKTKELISVAIAAYNRCEYCIVFHVYKALEAGANREEIMEAAMVAVAFGGGPSMAYSTTLLKDSIDEFEKDFK
>CP023671.1|AYE33246.1|349599_351291_-|dihydrolipoyl-dehydrogenase
MDIKLESLTGHDKSAKVGKINVSIGDMVEINTVLLQVETGKGNSPIKAKGSYKIKEIKVNEGEEVKIGDTLIKVEVLEENNSNKNNFNYFGNMIKGKDEKIETDLIVIGAGPGGYVSAIYAAKRGLKVVSIEKENLGGTCLNVGCIPTKALVKSSEVYYNLVNCNEFGLECENPKVNMGKIIDRKDKIKNTLVSGIDYLLNKNEVKQIKGEASFKDKRTIEVKSGRDKYSITGKNIIIATGSKISKINIKGIEEPFVLNSTTALSSKEKPKSITIIGGGVIGMEFAFMYSNLGVKVNVVEFADRLLTMVDSEISEEIKNIAEKKGITIFNSSKVSRIEKTENGEALVIFNKGEEEKYIVSEKVLVAIGREPNIEGLEIENANIKLNENLRGIEVSETLETNIDGIYAIGDVNNIMQLAHIASHQGIVAVDNILGENKTVDYSAVPNVIFTYPEIASVGLTEDQAKNNDIKYKTSKFYFQGNGKALTMGENEGFIKLVKDIEKDKIIGASIIGPDASSLVSTLTLIIKNNIKEDGIIETIFAHPTTGEVIHEAALELGIGGLHC
>CP023671.1|AYE33245.1|348670_349606_-|lipoate--protein-ligase
MLKNIIVISKSTDPYCNLAMEEYIFNNIKKNEVIFYLWQNHKTVVIGRNQNPYIECDVDYIEGNGAKIARRMSGGGTVYHDLGNLNFTFVTSKENHNIEKQILVIRKAIEKFGLSVDKSGRNDLTINNKKFSGHAFYEDDNKMFHHGTIMIDVDKLELNNILKPSKIKLKSKGIDSVKSRVINLKECNNDITLNDVFKNLIESFKEVYGEVYSIRETIGKEVKGNLLEKYKNHKWVYGESPEFNVNLETPTDIGNIQILMDIKDNVVKKVRVYSDSLNQISFSDLEQLIVKQEFNRENILKTVYYFLESFK
>CP023671.1|AYE33244.1|346949_348626_+|hypothetical-protein
MKKLFSILTIIFIFAFPNVVSATTKEYYIDNVNIQAEILQNGDVNVTENLGYDFNGDFNGIFRNLKLNNTLGYKISEVYSIDENGHKQLISEADNEADYTYKLIDNGDSIQIKVFCPSSNEKKSFFFNYTIEKAAKKYSDLSQLYWNFYTVENVSSIKEGSLNLSLNNSNFDSSVFHYDVFGDGDFETTYNDKSVSVNFKNLTSLLGIKLNFQKEFLNDIPEINSTAPTEVESQYQSSTDLNGKCIAFIALFISLGLGGIGFGFFINKLKFKKELEKYRSKFTFIPNEIYVEPPSSTSPALIDLLMNEKVVSKEILTPTLFYLVKKGYYTISESTYYSGKNKSNNLKEDLIFTRVHSKGLPKENHLVFLIDWFSMYEVNGSFSLQKIKKRIQSQSEAQKFINKLNEWIAEVFEDADSYTFFKTIGNKRILRNKYYNEKLKWLSYKNYLINSKENLEHKNLTNIDDPLIYATALDIDYDDIKVILNSLSKDIKRNSSEIPEFSYLYCNNYLFYSLLVNDINGDAHINIDNSPNSTSSSFGGFSSGSGFTGGGGGGSGAF
>CP023671.1|AYE33243.1|345197_346826_+|aspartate-4-decarboxylase
MKNRNLQREEIENIYGKISPFEFKNKLINLANGEKEKSARTLLDAGRGNPNWTASTPRQSFFTFGQFAVEESQRVIKNGDLAGMPQKDGIYKRFKEFISKNNSAPGISLLNNIIDYGVNKKSFNPDDFVYELADGIIGDNYPFPDRMLTHIEEIVHDYLVQEMCYNKLPTGKFNIFAVEGATAAMCYIFDTLKSNNLLKSRDKIAIMVPIFTPYLEIPHLPRYNLEVIYIKANELTKDHAHTWQYPKNELEKLKDSSIKALFFVNPSNPPSVSINKEGRELLVHIVKNYNKDLMIISDDVYGTFVNDFRSLMADLPYNTIGVYSLSKYFGVTGWRLGTLALHENNVFDKLLKNLSNEEKAILNKRYGDMNLNPESIPFIDRIVADSRQVALNHTAGLSTPQQVQMAFFCAFSLLDKENIYKNLTIDICHRRKKLLFEGLGLDLTEDPYDAAYYTEFDLLEWATNYYGDNFSRYLENNFKLVDVLYKLAEESSIVLLSGSGFQGPEWSIRISLANLNDEAYSTIGKVLHKILEGFVIDWKNSL
>CP023671.1|AYE33242.1|344762_344957_+|hypothetical-protein
MNNSANQDYIYFGLTTKECIDINDKEKTPKNNFNFSANDNCQEFYINLKSLEISKTLKLTLVDI
>CP023671.1|AYE33252.1|358508_359729_-|IS256-family-transposase
MSFSKEELIKILAKDPNIKTAEDIQNVLKDLFGGMLQQMLEAELDNHLGYEKHDYQNKNTTNSRNGKSRKTMKSNLGYFDLDVPRDREGSFEPEIVKKHQTDVSHLESSIIGMYAKGMTTRDIASQVNEIYGMDISPTLVSNITDKVIPMIREWQSRPLETVYPIVFMDAIHFKVRKDNTVVSKAAYAAIGVNIEGKKDVLGIWIGASESSKYWLLVLNELKNRGVKDILIASVDGLVGFNEAIRAVYPNTEIQRCIIHQIRNSSKYLSYKDLKAFNADLKLVYTASTEEVALAELDRLEEKWGEKYLIAVRSWRNNWNELSTFFKYPPEIRKIIYTTNAMESYNRQLRKVTKTKSIFPNDESLMKILYLATVDITKKWTQSIRGWAQILAQLSIFFEGRLDDQLF
>CP023671.1|AYE33253.1|365456_366677_-|IS256-family-transposase
MSFSKKELIKILAKDPNIKTAEDIQNVLKDLFGGMLQQMLEAELDNHLGYEKHDYQNKNTTNSRNGKSRKTMKSNLGYFDLDVPRDREGSFEPEIVKKHQTDVSHLESSIIGMYAKGMTTRDIASQVNEIYGMDISPTLVSNITDKVIPMIREWQSRPLETVYPIVFMDAIHFKVRKDNTVVSKAAYAAIGVNIEGKKDVLGIWIGASESSKYWLLVLNELKNRGVKDILIASVDGLVGFNEAIRAVYPNTEIQRCIIHQIRNSSKYLSYKDLKAFNADLKLVYTASTEEVALAELDRLEEKWGEKYLIAVRSWRNNWNELSTFFKYPPEIRKIIYTTNAMESYNRQLRKVTKTKSIFPNDESLMKILYLATVDITKKWTQSIRGWAQILAQLSIFFEGRLDDQLF
>CP023671.1|AYE33254.1|368470_368734_-|CRISPR-associated-endonuclease-Cas2
MFVIITYDVNEKRVNRVRKILKKYVTWTQNSVFEGEITEGKLTKCLAEVKKNLVSAEDSLYIYRVSYSKNITKDVVGVEKNLDELFI
>CP023671.1|AYE33255.1|368735_369719_-|subtype-I-B-CRISPR-associated-endonuclease-Cas1
MGKDYYVFSPGRIKRKDNTIYFINTDEEKRGIPIESIERIHFFSEVDLNSKFINYISQYKIILNFYNYYGFYSGSYYPRKKNVSGFLLVEQAVAYKDLESRLFLAKAFIDSAIHHILRNMRRYDKVPNEYFEKIAEEKERMLKANSIPEIMGAEGRIRKIYYESYQYILKNDFGFTNRNRRPPKDPLNALISFGNSVMYTAILGEVYQTQLDPTISYLHEPSTKRFSLILDISEIFKPLIIDTIIFSLINNRRLNNKDFTNEEGVCFLNDEGKKKFLTEFEKKMATSIKHRKLKRSVSYRQLIKLEGYKIIKHLINDEKYKPLKAWW
>CP023671.1|AYE33256.1|372549_373284_-|type-I-B-CRISPR-associated-protein-Cas5
MKRAVRLEIYQNLVNYKKPTSFQLKETYPLPPPSTVIGMVHFACDYKSYIPMNIGIQGEYNSKINDLYTRYEFAGASYEADRHNVKIDSKEQGKSYGMMRGISTAELLVDCNLVLYIQPEDDSKVEEIFEAFKNPREYISLGRREDLVQINKVEIVELKEVELEENMPLEMDSYIPVSLKNDIKSNATLYTLNKDYTLRTIKKGVETRSWNKIKVIHAVKGSTVIDEYTSLNKDLVNNSVVFLL
>CP023671.1|AYE33257.1|373293_374169_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MEKKGLTASFIFEAESANYGEGVGNVTALKKISRGDGEAYSYISRQAIRYNIINQMGEDNTPLGLDGEVLQFHTDATIKDYPEIDFFGYMKTIKPIRTRSAVVRLSNAVALESFNADTEFLTNKGLLDRYNKDLKDKKNGGNIAQSEIHKSYYSYTITIDLDKVGIDENDNIEISNEEKAKRVNKLLDTILFLYRDIRGRRENLSPIFAIGGVYSIKNPFFENRLKIKNNSLRIETINSILDLNEDINNNTNIGLLKGIFNNDESIENALKPIEIGEFFKELKSKVTEYYK
>CP023671.1|AYE33258.1|374168_375860_-|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MAKVRIELSDWMKNAGIVGFVKIINHRLNGSSQIDLKSNYIEFDTEILENFEEVYFEYLIYKYKEFISIEKIVSKYDYINLLLSKEVDEKDLAILNSHIKYTKERLKSASYKSAYEIINDSSYNLLEKEKQLKEIKIKKKQSISDVSEDIKLQCNLLKEIIEYLNEENVRKIIAAKNVIYDVIQGFWSDVSFLNKNNNKKNMYECYINDFINPVINYESSNLEKAKYTCFTCDNKIQKLSKPFAYDITWITKMGVDGSRKSSHYWNFQSDSNICPICNLIYSCIPAGFSVLNGKGLFINNNKSISKIISANNLILYSGKKIDELEQESYFNIIDSMEDKSVNEVNSEIENIQIVKFDKSNNSRPYTFNVLSKNKLEIISKNKKQLSALIGKSVKIAKDYYINIYSEVILRIYNGKNLFDLIALLTRLRISGEYKNSKIIYILISLNNNLMEGKYKVWYKDIDKFRDYGIKLRQIYGRNDENKIPGIAYRLQNALKVKNESRFMDTLLNAYTSRKQPIPIDFIEALKDVNKFQTIGYAFLIGLQGGLENRNQENNGNNIEEDNK
>CP023671.1|AYE33259.1|375871_376606_-|CRISPR-associated-endoribonuclease-Cas6
MRILVEIITEKIPLNNNRYLTLSLIKNVLEKQSPELFKAMYEDDENYNYRTKPFTYSLKLNDFKIVGDEFELKGNSTISISTPDPVLGSILYNGFLLTKEYEYNKKYKLSIGRVTLLKEKKVISNEVLFKTLSPLVIKNRRGEFLKIDNENYEKELNYIANKVLESYRGFGLKESLIFQPILMKKRVAKEKIEKFTKETNKDIFYITGYEGVFKLTGNKEDLNLIYNLGLGVRRSSGFGMLQIV
>CP023671.1|AYE33260.1|376730_377669_-|WYL-domain-containing-protein
MSSLGNLLKMLYILKRGQKVKVKDLAEELEVDHRQIRRYKEELSEYFDIQSITGPNGGYILCDEYFPFKDILTEKEINNLKRAIDTVSYSEEYELGKAIDKINFTILNSQSESLISEQIIPYSRPKMEIEKINKMYNEINLSILSCKEIIIVYVDNKGSLTRRAIQPHKFLRFKGEYYIIATCKLRNEIRYFKLVRIKEYILTEKRFEKMKNIDELINEYKENSIGIFGGNEIEVELEINPPMANTIKERIWVDNQEVIELEDGKILFKAIMKLGPELISWVLSMGDSVKINSSEELKRQVRIKVENIFKNL
>CP023671.1|AYE33261.1|378080_380666_-|hypothetical-protein
MRVEESKNLNIKLSVLITLFMIFSLFSNLSTPIQAETTRKEYVTTVNDHTIGDELFQFKFSSGWIESTGVNSFYNGDEYWTNATKSFQPSYRLKFYGNKVELYGVKEQTSAICEVSIDGGDIEEVDPYNPTRVTGQKIYEKSGLTDDEHILELKITYRKNQASKNYNGEIDFAKVYHKEIPATGVEMNKESIQIEVGMTDSIKAKVLPSYSTEKNIVYLVEDESIATITEDGEITGIKEGKTNIIATIEGTEIVGKTHLTIIKAGLPLGASIGSTDFHYLQKNYDDIKSLNKTTWNDIAWIGDELNSKIVTWTKDSNVNNVIISSSNFANENGDVIGSINVEISWLKETLANIGRGNPSAPVELFPDIIHNKGDLDIEANKVASAWVNITIPRDAKPGIYNGTITVSAEGLDTPYVFNYSFEVVNLVQPLPKETKTQMEIWQHPYAVARYYGVQKEELFTENHFKYLRPSLEEYRDMGGRGVIAHIVEEAWNHQSYDSDPSMVKWTKSLDGTFKFDYIDFDRWIQFNIDLGIINPKDGFGQIKCYSIVPWNNRIEYYNELTGEKESINPTPGTAEWRVPWTEFLSNFMNHLEEKGWFNITYISMDERSMKDLIASVDLIENIRNSNGESFKISSAMNYQSGNDYSFLDKIDDISIGLSHINHNSEDMKNMAKHRQEAGLLTTIYTCTGDYPNSFTISDSSESAWTMWYSLSQNTDGFMRWSWDGWVEDPLENVSYKYWEPGDPWLIYPAEKNSETKTFYSTPRYERLKEGIRDINKAKYLMENSKELKGEIEALVKSLKRANKGNNGYGSAVAATEKDRELTNNEVKRMRNGINDFAKQYIESKGVSVESVASKHMGNMLY

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Crispr_ID: CP023671_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023671_2

359797-365277

Unclear

Consensus_repeat	Method
ATTTACATTCCACTAGTTAAGATAAAAC	CRISPRCasFinder
ATTTACATTCCACTAGTTAAGATAAAAC	CRT
ATTTACATTCCACTAGTTAAGATAAAAC	PILER-CR

84 spacers

cas2,cas1,cas5,cas7,cas8b2,cas6,WYL

The CRISPR arrays of CP023671_2

>merge|CP023671|2|359797-365277|CRISPRCasFinder,CRT,PILER-CR
CACTCTCTTCCACTAGTTAAGATAAAACGTGTGCCCCCTTGTGGGGTCTACAATTTTAGAAGGGATTTACATTCCACTAGTTAAGATAAAACCCTGGTCTTTATGTTTTAGATATGATAATGTTGCCATTTACATTCCACTAGTTAAGATAAAACACGCACTAAAAATAAAATTTGCACCCCTTAATATAATAATTTACATTCCACTAGTTAAGATAAAACTATATTCTCTGCATAATGTTAAACAGATTCAAGGCTAATTTACATTCCACTAGTTAAGATAAAACGCGAGCAGCGTACTTAACTTGATTTTATCTACTTAAAATTTACATTCCACTAGTTAAGATAAAACAGTCAACTTTAACTTGTTCTTACTATCACGAATTCACATTTACATTCCACTAGTTAAGATAAAACAAGTTTTAATAATACTATAAGAACATCTCTGTGCTATTTACATTCCACTAGTTAAGATAAAACTCATTTATCACTTTTTTTGGGCAACGCTACGCTATAGAATTTACATTCCACTAGTTAAGATAAAACTTATTTTATATTATATTATATATTCAGTTAATGCAACATTTACATTCCACTAGTTAAGATAAAACCTTAAAAGAGATAAGAGGGAATATTTTTGTATGATATTTACATTCCACTAGTTAAGATAAAACTTTAATTATTTTGAATTATTTTAAATTATTTTTAAAAATTTACATTCCACTAGTTAAGATAAAACGCCTGTTGACAAAACGGAAAAACTTGACAATGTTAAATTTACATTCCACTAGTTAAGATAAAACATATCCGATATTGGTGTTGATTATGATAAATTTTGTGATTTACATTCCACTAGTTAAGATAAAACGTAATACTATTTATTTGAGATGTATGAAGTCCTATCGATTTACATTCCACTAGTTAAGATAAAACCCTAATGTTTCTGCTGCATCTGATGCTTCTTTGCTATTTACATTCCACTAGTTAAGATAAAACCGCTTGGAAGTGGATTTAATAACTATAATCAAGATTAATTTACATTCCACTAGTTAAGATAAAACTGACTGCAATAGATTTTATTTTTAAAGATTTAGAACCAATTTACATTCCACTAGTTAAGATAAAACAACTTCTTTTTTAAAAGAAAGAAGTTTCATAGAAGAATTTACATTCCACTAGTTAAGATAAAACAAATTACAAAAAACCTCAAAAATCGAGGTTTAGACATTTACATTCCACTAGTTAAGATAAAACCCTCCAGACTTCACTATCCTGGATATTTCTTTTTTAATTTACATTCCACTAGTTAAGATAAAACCAGTTAGATTTAGAACAAAGATGTATGATTTATCAGATTTACATTCCACTAGTTAAGATAAAACCCTTCAGAATACTAATAAGAATACTAGAGAAAAAAAGATTTACATTCCACTAGTTAAGATAAAACGTTTATCCCATTATATGACGAGTATACATCTAACTTGAATTTACATTCCACTAGTTAAGATAAAACTGATTTTTAATCACTTACCGGACTCGGCGGTTGCTAATTTACATTCCACTAGTTAAGATAAAACATTATACAAGATATAAAATATACTTTTGATGCTACAGTATTTACATTCCACTAGTTAAGATAAAACGTGCAGAGTTCCAGGGACTGATATCAACGTCAAACACTAATTTACATTCCACTAGTTAAGATAAAACGAGCCTCTTGTAAAAATGGATAAAAAAAGCGTTTCAGAATTTACATTCCACTAGTTAAGATAAAACGTAAGCTTGATATATCAGATACAGCAAAATTAGATGCATTTACATTCCACTAGTTAAGATAAAACTTTAACTTTTAAACAAGAGAATGAAGAGATTTATGCAATTTACATTCCACTAGTTAAGATAAAACTGGGGAATAGAAATACAAGAAAGAATAACAGAAATAGATTTACATTCCACTAGTTAAGATAAAACTGAACCTGAAGAATTAAGCAATACATTTCAAAATTTGGATTTACATTCCACTAGTTAAGATAAAACTACTCATTGTCCTGGTTATGCTGAATTCGACCTTGTATTTACATTCCACTAGTTAAGATAAAACGAGAGAAGATATTGCGAAACAGAATATAGCAGATAGATTTACATTCCACTAGTTAAGATAAAACATGAAGTTTTACAGCCAGTTTTAACTGCTATAGCAATATTTACATTCCACTAGTTAAGATAAAACCTTAGTGCAAGTGCTATCATTTAAACATCAACAAAAATTTACATTCCACTAGTTAAGATAAAACGCAAAATCAAATAGATATAATTAATAATAATCTATCGAGATTTACATTCCACTAGTTAAGATAAAACCGGGTGTTGCATGGGAAACCTTATTAGGTAGCCAAGATTTACATTCCACTAGTTAAGATAAAACATGGGCGTGTCTGCTAGTGCTTTGATTGTTTTGGCGAATTTACATTCCACTAGTTAAGATAAAACTAACAAGATTACTAAATGTAAACATAATTTTCTATAATTTACATTCCACTAGTTAAGATAAAACCGTATTACTCAATTTGAGCATAATTATTCGAGGATTATTTACATTCCACTAGTTAAGATAAAACCAAGAATACCTTCAGCTAAATGTTGTAAAGGTTTCAAATTTACATTCCACTAGTTAAGATAAAACTATATAGGTTAGGAGGATTATTATGGTTTGTAAAAATTTACATTCCACTAGTTAAGATAAAACTCTTTACCATTTAGTACTTACTATACCGAACCTTGAATTTACATTCCACTAGTTAAGATAAAACGTAACAAGATTACTAAATGTAAACATAATTTTTTGTAATTTACATTCCACTAGTTAAGATAAAACACGAAATGGAATAAACAGTCGCTATATTCTTCTAGCACATTTACATTCCACTAGTTAAGATAAAACTTATAGCCTTATCTAGCTCCGTTGTAGGATTATACTTATTTACATTCCACTAGTTAAGATAAAACCTCCAGCTTACATCACTTGTTCGCCTTACTCTACACCATTTACATTCCACTAGTTAAGATAAAACAGAATGCACCTTTTCTATTGTGCATCTCATTTTTGAATTTACATTCCACTAGTTAAGATAAAACTGAGATAGGAAGGTGGATTGTAGAAGGATTATGGAAATTTACATTCCACTAGTTAAGATAAAACAAGGCTATTTTTTCGTGTTAATAGATAACACATTGATATTTACATTCCACTAGTTAAGATAAAACAGGCAAGTGCATAACTTAGTGCATACCCAATTTTGTAATTTACATTCCACTAGTTAAGATAAAACTGTGTTTGTTAACCCTACTACAAGAGGGATAAGAGAATTTACATTCCACTAGTTAAGATAAAACCTGCATTCTTAATTAAATCATCGACCACTTCCAAATATTTACATTCCACTAGTTAAGATAAAACGCATACTATGAAAAGAGACCTATAACTATTTTAGGCACATTTACATTCCACTAGTTAAGATAAAACAAGTTTATTAAGTCTATAAATACAACTGACTCTAAAATATTTACATTCCACTAGTTAAGATAAAACAAACGCACCTAAATGGCGTAATTTGAACAATACTGAAATTTACATTCCACTAGTTAAGATAAAACTAGATATTATTCTAATTTAACTATGAATAGATATCGCATTTACATTCCACTAGTTAAGATAAAACCTTTAGTTGGATTGGTATTTCAAATAGACAATGCGTTATTTACATTCCACTAGTTAAGATAAAACTCAGGTTCAGTCAAAACCATATTGTAATTTGTTGTTAGATTTACATTCCACTAGTTAAGATAAAACGAATACAAATACACATAAAGAAAGTGTGCTGGCAAAATTTACATTCCACTAGTTAAGATAAAACCAATCACTAATAAACGGTCAGTTAACAGATAAGTCAATATTTACATTCCACTAGTTAAGATAAAACTTACGTTCATAAAATATCACCTCAATCAAAGTAACTAGATTTACATTCCACTAGTTAAGATAAAACATTTTGCCCACATACATGAGGGTGGTTATTGCTCAAATTTACATTCCACTAGTTAAGATAAAACAATTTAAAATTAGACTAGGAGATTATTTTGCCATGTAATTTACATTCCACTAGTTAAGATAAAACGTTTAACCTCGGCTTTTCTTATATACATGGAGGTAAGCAATTTACATTCCACTAGTTAAGATAAAACGAACCTGAAAAAAGTCAAACTCATTATAGAGTTCAAGTATTTACATTCCACTAGTTAAGATAAAACCCTTGTGTATCTCTTATGGTGAGATAGTCATATAGACATTTACATTCCACTAGTTAAGATAAAACGAGCGAAACCCCCTCTACCCCCCTCGACACAATTTATTTACATTCCACTAGTTAAGATAAAACATAATGAAATATACACTTACAAAGCTTTGTATCAAGAATTTACATTCCACTAGTTAAGATAAAACAAGAAAATAATATATAACTATATATACCCGGGCGTGTCAATTTACATTCCACTAGTTAAGATAAAACGGTGCTTTCTTGAAGCCATCATTATTAAGAAGCAAAGATTTACATTCCACTAGTTAAGATAAAACCTCGCTTAGAGGTTTAATGTCTTTATATCCTACAACAGATTTACATTCCACTAGTTAAGATAAAACGCAATTGCTGTAATCATTATCCATTTCATTTTGTTATTTACATTCCACTAGTTAAGATAAAACATGAAATTGAACGGTTACGGAACGTATAATCCCTACTTATTTACATTCCACTAGTTAAGATAAAACTTAAAAAAATATTAAAAAACCTAACTATAATAATAGAATTTACATTCCACTAGTTAAGATAAAACAGTTTTAAACGAAAAACTTGTTGACAAATGCGGACATATTTACATTCCACTAGTTAAGATAAAACTTAACATTTTTCAATGATTACACGAAAATAAAAATAACATTTACATTCCACTAGTTAAGATAAAACAGAACTATGCTAATCCAAGAAGGGTTAAATCTAGATGCATTTACATTCCACTAGTTAAGATAAAACGAGCTAAAAACTCTATCCCAGCTCCCGTCTACATAATATTTACATTCCACTAGTTAAGATAAAACGGAGGCTACAATTATGGAACGCTATAATATATGCGGTATTTACATTCCACTAGTTAAGATAAAACTTGGTGAGTTTGATGTAGAATCAAATATCATTTCACCATTTACATTCCACTAGTTAAGATAAAACTAACAAAAGTAACAAAATAACTGTTTTCACCTAAAAATATTTACATTCCACTAGTTAAGATAAAACGCTGACCCTGCCAACAACTTGCAAGTTGTGGAAAATAATTTACATTCCACTAGTTAAGATAAAACGGATTGAGCATTATGCAAATGCCACTATCTAAAGAGAAATTTACATTCCACTAGTTAAGATAAAAC

>CP023671|2|2|359797-365277|CRISPRCasFinder
CACTCTCTTCCACTAGTTAAGATAAAAC	GTGTGCCCCCTTGTGGGGTCTACAATTTTAGAAGGG
ATTTACATTCCACTAGTTAAGATAAAAC	CCTGGTCTTTATGTTTTAGATATGATAATGTTGCC
ATTTACATTCCACTAGTTAAGATAAAAC	ACGCACTAAAAATAAAATTTGCACCCCTTAATATAATA
ATTTACATTCCACTAGTTAAGATAAAAC	TATATTCTCTGCATAATGTTAAACAGATTCAAGGCTA
ATTTACATTCCACTAGTTAAGATAAAAC	GCGAGCAGCGTACTTAACTTGATTTTATCTACTTAAA
ATTTACATTCCACTAGTTAAGATAAAAC	AGTCAACTTTAACTTGTTCTTACTATCACGAATTCAC
ATTTACATTCCACTAGTTAAGATAAAAC	AAGTTTTAATAATACTATAAGAACATCTCTGTGCT
ATTTACATTCCACTAGTTAAGATAAAAC	TCATTTATCACTTTTTTTGGGCAACGCTACGCTATAGA
ATTTACATTCCACTAGTTAAGATAAAAC	TTATTTTATATTATATTATATATTCAGTTAATGCAAC
ATTTACATTCCACTAGTTAAGATAAAAC	CTTAAAAGAGATAAGAGGGAATATTTTTGTATGAT
ATTTACATTCCACTAGTTAAGATAAAAC	TTTAATTATTTTGAATTATTTTAAATTATTTTTAAAA
ATTTACATTCCACTAGTTAAGATAAAAC	GCCTGTTGACAAAACGGAAAAACTTGACAATGTTAA
ATTTACATTCCACTAGTTAAGATAAAAC	ATATCCGATATTGGTGTTGATTATGATAAATTTTGTG
ATTTACATTCCACTAGTTAAGATAAAAC	GTAATACTATTTATTTGAGATGTATGAAGTCCTATCG
ATTTACATTCCACTAGTTAAGATAAAAC	CCTAATGTTTCTGCTGCATCTGATGCTTCTTTGCT
ATTTACATTCCACTAGTTAAGATAAAAC	CGCTTGGAAGTGGATTTAATAACTATAATCAAGATTA
ATTTACATTCCACTAGTTAAGATAAAAC	TGACTGCAATAGATTTTATTTTTAAAGATTTAGAACCA
ATTTACATTCCACTAGTTAAGATAAAAC	AACTTCTTTTTTAAAAGAAAGAAGTTTCATAGAAGA
ATTTACATTCCACTAGTTAAGATAAAAC	AAATTACAAAAAACCTCAAAAATCGAGGTTTAGAC
ATTTACATTCCACTAGTTAAGATAAAAC	CCTCCAGACTTCACTATCCTGGATATTTCTTTTTTA
ATTTACATTCCACTAGTTAAGATAAAAC	CAGTTAGATTTAGAACAAAGATGTATGATTTATCAG
ATTTACATTCCACTAGTTAAGATAAAAC	CCTTCAGAATACTAATAAGAATACTAGAGAAAAAAAG
ATTTACATTCCACTAGTTAAGATAAAAC	GTTTATCCCATTATATGACGAGTATACATCTAACTTGA
ATTTACATTCCACTAGTTAAGATAAAAC	TGATTTTTAATCACTTACCGGACTCGGCGGTTGCTA
ATTTACATTCCACTAGTTAAGATAAAAC	ATTATACAAGATATAAAATATACTTTTGATGCTACAGT
ATTTACATTCCACTAGTTAAGATAAAAC	GTGCAGAGTTCCAGGGACTGATATCAACGTCAAACACTA
ATTTACATTCCACTAGTTAAGATAAAAC	GAGCCTCTTGTAAAAATGGATAAAAAAAGCGTTTCAGA
ATTTACATTCCACTAGTTAAGATAAAAC	GTAAGCTTGATATATCAGATACAGCAAAATTAGATGC
ATTTACATTCCACTAGTTAAGATAAAAC	TTTAACTTTTAAACAAGAGAATGAAGAGATTTATGCA
ATTTACATTCCACTAGTTAAGATAAAAC	TGGGGAATAGAAATACAAGAAAGAATAACAGAAATAG
ATTTACATTCCACTAGTTAAGATAAAAC	TGAACCTGAAGAATTAAGCAATACATTTCAAAATTTGG
ATTTACATTCCACTAGTTAAGATAAAAC	TACTCATTGTCCTGGTTATGCTGAATTCGACCTTGT
ATTTACATTCCACTAGTTAAGATAAAAC	GAGAGAAGATATTGCGAAACAGAATATAGCAGATAG
ATTTACATTCCACTAGTTAAGATAAAAC	ATGAAGTTTTACAGCCAGTTTTAACTGCTATAGCAAT
ATTTACATTCCACTAGTTAAGATAAAAC	CTTAGTGCAAGTGCTATCATTTAAACATCAACAAAA
ATTTACATTCCACTAGTTAAGATAAAAC	GCAAAATCAAATAGATATAATTAATAATAATCTATCGAG
ATTTACATTCCACTAGTTAAGATAAAAC	CGGGTGTTGCATGGGAAACCTTATTAGGTAGCCAAG
ATTTACATTCCACTAGTTAAGATAAAAC	ATGGGCGTGTCTGCTAGTGCTTTGATTGTTTTGGCGA
ATTTACATTCCACTAGTTAAGATAAAAC	TAACAAGATTACTAAATGTAAACATAATTTTCTATA
ATTTACATTCCACTAGTTAAGATAAAAC	CGTATTACTCAATTTGAGCATAATTATTCGAGGATT
ATTTACATTCCACTAGTTAAGATAAAAC	CAAGAATACCTTCAGCTAAATGTTGTAAAGGTTTCAA
ATTTACATTCCACTAGTTAAGATAAAAC	TATATAGGTTAGGAGGATTATTATGGTTTGTAAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TCTTTACCATTTAGTACTTACTATACCGAACCTTGA
ATTTACATTCCACTAGTTAAGATAAAAC	GTAACAAGATTACTAAATGTAAACATAATTTTTTGTA
ATTTACATTCCACTAGTTAAGATAAAAC	ACGAAATGGAATAAACAGTCGCTATATTCTTCTAGCAC
ATTTACATTCCACTAGTTAAGATAAAAC	TTATAGCCTTATCTAGCTCCGTTGTAGGATTATACTT
ATTTACATTCCACTAGTTAAGATAAAAC	CTCCAGCTTACATCACTTGTTCGCCTTACTCTACACC
ATTTACATTCCACTAGTTAAGATAAAAC	AGAATGCACCTTTTCTATTGTGCATCTCATTTTTGA
ATTTACATTCCACTAGTTAAGATAAAAC	TGAGATAGGAAGGTGGATTGTAGAAGGATTATGGAA
ATTTACATTCCACTAGTTAAGATAAAAC	AAGGCTATTTTTTCGTGTTAATAGATAACACATTGAT
ATTTACATTCCACTAGTTAAGATAAAAC	AGGCAAGTGCATAACTTAGTGCATACCCAATTTTGTA
ATTTACATTCCACTAGTTAAGATAAAAC	TGTGTTTGTTAACCCTACTACAAGAGGGATAAGAGA
ATTTACATTCCACTAGTTAAGATAAAAC	CTGCATTCTTAATTAAATCATCGACCACTTCCAAAT
ATTTACATTCCACTAGTTAAGATAAAAC	GCATACTATGAAAAGAGACCTATAACTATTTTAGGCAC
ATTTACATTCCACTAGTTAAGATAAAAC	AAGTTTATTAAGTCTATAAATACAACTGACTCTAAAAT
ATTTACATTCCACTAGTTAAGATAAAAC	AAACGCACCTAAATGGCGTAATTTGAACAATACTGAA
ATTTACATTCCACTAGTTAAGATAAAAC	TAGATATTATTCTAATTTAACTATGAATAGATATCGC
ATTTACATTCCACTAGTTAAGATAAAAC	CTTTAGTTGGATTGGTATTTCAAATAGACAATGCGTT
ATTTACATTCCACTAGTTAAGATAAAAC	TCAGGTTCAGTCAAAACCATATTGTAATTTGTTGTTAG
ATTTACATTCCACTAGTTAAGATAAAAC	GAATACAAATACACATAAAGAAAGTGTGCTGGCAAA
ATTTACATTCCACTAGTTAAGATAAAAC	CAATCACTAATAAACGGTCAGTTAACAGATAAGTCAAT
ATTTACATTCCACTAGTTAAGATAAAAC	TTACGTTCATAAAATATCACCTCAATCAAAGTAACTAG
ATTTACATTCCACTAGTTAAGATAAAAC	ATTTTGCCCACATACATGAGGGTGGTTATTGCTCAA
ATTTACATTCCACTAGTTAAGATAAAAC	AATTTAAAATTAGACTAGGAGATTATTTTGCCATGTA
ATTTACATTCCACTAGTTAAGATAAAAC	GTTTAACCTCGGCTTTTCTTATATACATGGAGGTAAGCA
ATTTACATTCCACTAGTTAAGATAAAAC	GAACCTGAAAAAAGTCAAACTCATTATAGAGTTCAAGT
ATTTACATTCCACTAGTTAAGATAAAAC	CCTTGTGTATCTCTTATGGTGAGATAGTCATATAGAC
ATTTACATTCCACTAGTTAAGATAAAAC	GAGCGAAACCCCCTCTACCCCCCTCGACACAATTT
ATTTACATTCCACTAGTTAAGATAAAAC	ATAATGAAATATACACTTACAAAGCTTTGTATCAAGA
ATTTACATTCCACTAGTTAAGATAAAAC	AAGAAAATAATATATAACTATATATACCCGGGCGTGTCA
ATTTACATTCCACTAGTTAAGATAAAAC	GGTGCTTTCTTGAAGCCATCATTATTAAGAAGCAAAG
ATTTACATTCCACTAGTTAAGATAAAAC	CTCGCTTAGAGGTTTAATGTCTTTATATCCTACAACAG
ATTTACATTCCACTAGTTAAGATAAAAC	GCAATTGCTGTAATCATTATCCATTTCATTTTGTT
ATTTACATTCCACTAGTTAAGATAAAAC	ATGAAATTGAACGGTTACGGAACGTATAATCCCTACTT
ATTTACATTCCACTAGTTAAGATAAAAC	TTAAAAAAATATTAAAAAACCTAACTATAATAATAGA
ATTTACATTCCACTAGTTAAGATAAAAC	AGTTTTAAACGAAAAACTTGTTGACAAATGCGGACAT
ATTTACATTCCACTAGTTAAGATAAAAC	TTAACATTTTTCAATGATTACACGAAAATAAAAATAAC
ATTTACATTCCACTAGTTAAGATAAAAC	AGAACTATGCTAATCCAAGAAGGGTTAAATCTAGATGC
ATTTACATTCCACTAGTTAAGATAAAAC	GAGCTAAAAACTCTATCCCAGCTCCCGTCTACATAAT
ATTTACATTCCACTAGTTAAGATAAAAC	GGAGGCTACAATTATGGAACGCTATAATATATGCGGT
ATTTACATTCCACTAGTTAAGATAAAAC	TTGGTGAGTTTGATGTAGAATCAAATATCATTTCACC
ATTTACATTCCACTAGTTAAGATAAAAC	TAACAAAAGTAACAAAATAACTGTTTTCACCTAAAAAT
ATTTACATTCCACTAGTTAAGATAAAAC	GCTGACCCTGCCAACAACTTGCAAGTTGTGGAAAATA
ATTTACATTCCACTAGTTAAGATAAAAC	GGATTGAGCATTATGCAAATGCCACTATCTAAAGAGAA
ATTTACATTCCACTAGTTAAGATAAAAC

>CP023671|2|2|359797-365277|CRT
CACTCTCTTCCACTAGTTAAGATAAAAC	GTGTGCCCCCTTGTGGGGTCTACAATTTTAGAAGGG
ATTTACATTCCACTAGTTAAGATAAAAC	CCTGGTCTTTATGTTTTAGATATGATAATGTTGCC
ATTTACATTCCACTAGTTAAGATAAAAC	ACGCACTAAAAATAAAATTTGCACCCCTTAATATAATA
ATTTACATTCCACTAGTTAAGATAAAAC	TATATTCTCTGCATAATGTTAAACAGATTCAAGGCTA
ATTTACATTCCACTAGTTAAGATAAAAC	GCGAGCAGCGTACTTAACTTGATTTTATCTACTTAAA
ATTTACATTCCACTAGTTAAGATAAAAC	AGTCAACTTTAACTTGTTCTTACTATCACGAATTCAC
ATTTACATTCCACTAGTTAAGATAAAAC	AAGTTTTAATAATACTATAAGAACATCTCTGTGCT
ATTTACATTCCACTAGTTAAGATAAAAC	TCATTTATCACTTTTTTTGGGCAACGCTACGCTATAGA
ATTTACATTCCACTAGTTAAGATAAAAC	TTATTTTATATTATATTATATATTCAGTTAATGCAAC
ATTTACATTCCACTAGTTAAGATAAAAC	CTTAAAAGAGATAAGAGGGAATATTTTTGTATGAT
ATTTACATTCCACTAGTTAAGATAAAAC	TTTAATTATTTTGAATTATTTTAAATTATTTTTAAAA
ATTTACATTCCACTAGTTAAGATAAAAC	GCCTGTTGACAAAACGGAAAAACTTGACAATGTTAA
ATTTACATTCCACTAGTTAAGATAAAAC	ATATCCGATATTGGTGTTGATTATGATAAATTTTGTG
ATTTACATTCCACTAGTTAAGATAAAAC	GTAATACTATTTATTTGAGATGTATGAAGTCCTATCG
ATTTACATTCCACTAGTTAAGATAAAAC	CCTAATGTTTCTGCTGCATCTGATGCTTCTTTGCT
ATTTACATTCCACTAGTTAAGATAAAAC	CGCTTGGAAGTGGATTTAATAACTATAATCAAGATTA
ATTTACATTCCACTAGTTAAGATAAAAC	TGACTGCAATAGATTTTATTTTTAAAGATTTAGAACCA
ATTTACATTCCACTAGTTAAGATAAAAC	AACTTCTTTTTTAAAAGAAAGAAGTTTCATAGAAGA
ATTTACATTCCACTAGTTAAGATAAAAC	AAATTACAAAAAACCTCAAAAATCGAGGTTTAGAC
ATTTACATTCCACTAGTTAAGATAAAAC	CCTCCAGACTTCACTATCCTGGATATTTCTTTTTTA
ATTTACATTCCACTAGTTAAGATAAAAC	CAGTTAGATTTAGAACAAAGATGTATGATTTATCAG
ATTTACATTCCACTAGTTAAGATAAAAC	CCTTCAGAATACTAATAAGAATACTAGAGAAAAAAAG
ATTTACATTCCACTAGTTAAGATAAAAC	GTTTATCCCATTATATGACGAGTATACATCTAACTTGA
ATTTACATTCCACTAGTTAAGATAAAAC	TGATTTTTAATCACTTACCGGACTCGGCGGTTGCTA
ATTTACATTCCACTAGTTAAGATAAAAC	ATTATACAAGATATAAAATATACTTTTGATGCTACAGT
ATTTACATTCCACTAGTTAAGATAAAAC	GTGCAGAGTTCCAGGGACTGATATCAACGTCAAACACTA
ATTTACATTCCACTAGTTAAGATAAAAC	GAGCCTCTTGTAAAAATGGATAAAAAAAGCGTTTCAGA
ATTTACATTCCACTAGTTAAGATAAAAC	GTAAGCTTGATATATCAGATACAGCAAAATTAGATGC
ATTTACATTCCACTAGTTAAGATAAAAC	TTTAACTTTTAAACAAGAGAATGAAGAGATTTATGCA
ATTTACATTCCACTAGTTAAGATAAAAC	TGGGGAATAGAAATACAAGAAAGAATAACAGAAATAG
ATTTACATTCCACTAGTTAAGATAAAAC	TGAACCTGAAGAATTAAGCAATACATTTCAAAATTTGG
ATTTACATTCCACTAGTTAAGATAAAAC	TACTCATTGTCCTGGTTATGCTGAATTCGACCTTGT
ATTTACATTCCACTAGTTAAGATAAAAC	GAGAGAAGATATTGCGAAACAGAATATAGCAGATAG
ATTTACATTCCACTAGTTAAGATAAAAC	ATGAAGTTTTACAGCCAGTTTTAACTGCTATAGCAAT
ATTTACATTCCACTAGTTAAGATAAAAC	CTTAGTGCAAGTGCTATCATTTAAACATCAACAAAA
ATTTACATTCCACTAGTTAAGATAAAAC	GCAAAATCAAATAGATATAATTAATAATAATCTATCGAG
ATTTACATTCCACTAGTTAAGATAAAAC	CGGGTGTTGCATGGGAAACCTTATTAGGTAGCCAAG
ATTTACATTCCACTAGTTAAGATAAAAC	ATGGGCGTGTCTGCTAGTGCTTTGATTGTTTTGGCGA
ATTTACATTCCACTAGTTAAGATAAAAC	TAACAAGATTACTAAATGTAAACATAATTTTCTATA
ATTTACATTCCACTAGTTAAGATAAAAC	CGTATTACTCAATTTGAGCATAATTATTCGAGGATT
ATTTACATTCCACTAGTTAAGATAAAAC	CAAGAATACCTTCAGCTAAATGTTGTAAAGGTTTCAA
ATTTACATTCCACTAGTTAAGATAAAAC	TATATAGGTTAGGAGGATTATTATGGTTTGTAAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TCTTTACCATTTAGTACTTACTATACCGAACCTTGA
ATTTACATTCCACTAGTTAAGATAAAAC	GTAACAAGATTACTAAATGTAAACATAATTTTTTGTA
ATTTACATTCCACTAGTTAAGATAAAAC	ACGAAATGGAATAAACAGTCGCTATATTCTTCTAGCAC
ATTTACATTCCACTAGTTAAGATAAAAC	TTATAGCCTTATCTAGCTCCGTTGTAGGATTATACTT
ATTTACATTCCACTAGTTAAGATAAAAC	CTCCAGCTTACATCACTTGTTCGCCTTACTCTACACC
ATTTACATTCCACTAGTTAAGATAAAAC	AGAATGCACCTTTTCTATTGTGCATCTCATTTTTGA
ATTTACATTCCACTAGTTAAGATAAAAC	TGAGATAGGAAGGTGGATTGTAGAAGGATTATGGAA
ATTTACATTCCACTAGTTAAGATAAAAC	AAGGCTATTTTTTCGTGTTAATAGATAACACATTGAT
ATTTACATTCCACTAGTTAAGATAAAAC	AGGCAAGTGCATAACTTAGTGCATACCCAATTTTGTA
ATTTACATTCCACTAGTTAAGATAAAAC	TGTGTTTGTTAACCCTACTACAAGAGGGATAAGAGA
ATTTACATTCCACTAGTTAAGATAAAAC	CTGCATTCTTAATTAAATCATCGACCACTTCCAAAT
ATTTACATTCCACTAGTTAAGATAAAAC	GCATACTATGAAAAGAGACCTATAACTATTTTAGGCAC
ATTTACATTCCACTAGTTAAGATAAAAC	AAGTTTATTAAGTCTATAAATACAACTGACTCTAAAAT
ATTTACATTCCACTAGTTAAGATAAAAC	AAACGCACCTAAATGGCGTAATTTGAACAATACTGAA
ATTTACATTCCACTAGTTAAGATAAAAC	TAGATATTATTCTAATTTAACTATGAATAGATATCGC
ATTTACATTCCACTAGTTAAGATAAAAC	CTTTAGTTGGATTGGTATTTCAAATAGACAATGCGTT
ATTTACATTCCACTAGTTAAGATAAAAC	TCAGGTTCAGTCAAAACCATATTGTAATTTGTTGTTAG
ATTTACATTCCACTAGTTAAGATAAAAC	GAATACAAATACACATAAAGAAAGTGTGCTGGCAAA
ATTTACATTCCACTAGTTAAGATAAAAC	CAATCACTAATAAACGGTCAGTTAACAGATAAGTCAAT
ATTTACATTCCACTAGTTAAGATAAAAC	TTACGTTCATAAAATATCACCTCAATCAAAGTAACTAG
ATTTACATTCCACTAGTTAAGATAAAAC	ATTTTGCCCACATACATGAGGGTGGTTATTGCTCAA
ATTTACATTCCACTAGTTAAGATAAAAC	AATTTAAAATTAGACTAGGAGATTATTTTGCCATGTA
ATTTACATTCCACTAGTTAAGATAAAAC	GTTTAACCTCGGCTTTTCTTATATACATGGAGGTAAGCA
ATTTACATTCCACTAGTTAAGATAAAAC	GAACCTGAAAAAAGTCAAACTCATTATAGAGTTCAAGT
ATTTACATTCCACTAGTTAAGATAAAAC	CCTTGTGTATCTCTTATGGTGAGATAGTCATATAGAC
ATTTACATTCCACTAGTTAAGATAAAAC	GAGCGAAACCCCCTCTACCCCCCTCGACACAATTT
ATTTACATTCCACTAGTTAAGATAAAAC	ATAATGAAATATACACTTACAAAGCTTTGTATCAAGA
ATTTACATTCCACTAGTTAAGATAAAAC	AAGAAAATAATATATAACTATATATACCCGGGCGTGTCA
ATTTACATTCCACTAGTTAAGATAAAAC	GGTGCTTTCTTGAAGCCATCATTATTAAGAAGCAAAG
ATTTACATTCCACTAGTTAAGATAAAAC	CTCGCTTAGAGGTTTAATGTCTTTATATCCTACAACAG
ATTTACATTCCACTAGTTAAGATAAAAC	GCAATTGCTGTAATCATTATCCATTTCATTTTGTT
ATTTACATTCCACTAGTTAAGATAAAAC	ATGAAATTGAACGGTTACGGAACGTATAATCCCTACTT
ATTTACATTCCACTAGTTAAGATAAAAC	TTAAAAAAATATTAAAAAACCTAACTATAATAATAGA
ATTTACATTCCACTAGTTAAGATAAAAC	AGTTTTAAACGAAAAACTTGTTGACAAATGCGGACAT
ATTTACATTCCACTAGTTAAGATAAAAC	TTAACATTTTTCAATGATTACACGAAAATAAAAATAAC
ATTTACATTCCACTAGTTAAGATAAAAC	AGAACTATGCTAATCCAAGAAGGGTTAAATCTAGATGC
ATTTACATTCCACTAGTTAAGATAAAAC	GAGCTAAAAACTCTATCCCAGCTCCCGTCTACATAAT
ATTTACATTCCACTAGTTAAGATAAAAC	GGAGGCTACAATTATGGAACGCTATAATATATGCGGT
ATTTACATTCCACTAGTTAAGATAAAAC	TTGGTGAGTTTGATGTAGAATCAAATATCATTTCACC
ATTTACATTCCACTAGTTAAGATAAAAC	TAACAAAAGTAACAAAATAACTGTTTTCACCTAAAAAT
ATTTACATTCCACTAGTTAAGATAAAAC	GCTGACCCTGCCAACAACTTGCAAGTTGTGGAAAATA
ATTTACATTCCACTAGTTAAGATAAAAC	GGATTGAGCATTATGCAAATGCCACTATCTAAAGAGAA
ATTTACATTCCACTAGTTAAGATAAAAC

>CP023671|2|2|360895-365277|PILER-CR
ATTTACATTCCACTAGTTAAGATAAAAC	AACTTCTTTTTTAAAAGAAAGAAGTTTCATAGAAGA
ATTTACATTCCACTAGTTAAGATAAAAC	AAATTACAAAAAACCTCAAAAATCGAGGTTTAGAC
ATTTACATTCCACTAGTTAAGATAAAAC	CCTCCAGACTTCACTATCCTGGATATTTCTTTTTTA
ATTTACATTCCACTAGTTAAGATAAAAC	CAGTTAGATTTAGAACAAAGATGTATGATTTATCAG
ATTTACATTCCACTAGTTAAGATAAAAC	CCTTCAGAATACTAATAAGAATACTAGAGAAAAAAAG
ATTTACATTCCACTAGTTAAGATAAAAC	GTTTATCCCATTATATGACGAGTATACATCTAACTTGA
ATTTACATTCCACTAGTTAAGATAAAAC	TGATTTTTAATCACTTACCGGACTCGGCGGTTGCTA
ATTTACATTCCACTAGTTAAGATAAAAC	ATTATACAAGATATAAAATATACTTTTGATGCTACAGT
ATTTACATTCCACTAGTTAAGATAAAAC	GTGCAGAGTTCCAGGGACTGATATCAACGTCAAACACTA
ATTTACATTCCACTAGTTAAGATAAAAC	GAGCCTCTTGTAAAAATGGATAAAAAAAGCGTTTCAGA
ATTTACATTCCACTAGTTAAGATAAAAC	GTAAGCTTGATATATCAGATACAGCAAAATTAGATGC
ATTTACATTCCACTAGTTAAGATAAAAC	TTTAACTTTTAAACAAGAGAATGAAGAGATTTATGCA
ATTTACATTCCACTAGTTAAGATAAAAC	TGGGGAATAGAAATACAAGAAAGAATAACAGAAATAG
ATTTACATTCCACTAGTTAAGATAAAAC	TGAACCTGAAGAATTAAGCAATACATTTCAAAATTTGG
ATTTACATTCCACTAGTTAAGATAAAAC	TACTCATTGTCCTGGTTATGCTGAATTCGACCTTGT
ATTTACATTCCACTAGTTAAGATAAAAC	GAGAGAAGATATTGCGAAACAGAATATAGCAGATAG
ATTTACATTCCACTAGTTAAGATAAAAC	ATGAAGTTTTACAGCCAGTTTTAACTGCTATAGCAAT
ATTTACATTCCACTAGTTAAGATAAAAC	CTTAGTGCAAGTGCTATCATTTAAACATCAACAAAA
ATTTACATTCCACTAGTTAAGATAAAAC	GCAAAATCAAATAGATATAATTAATAATAATCTATCGAG
ATTTACATTCCACTAGTTAAGATAAAAC	CGGGTGTTGCATGGGAAACCTTATTAGGTAGCCAAG
ATTTACATTCCACTAGTTAAGATAAAAC	ATGGGCGTGTCTGCTAGTGCTTTGATTGTTTTGGCGA
ATTTACATTCCACTAGTTAAGATAAAAC	TAACAAGATTACTAAATGTAAACATAATTTTCTATA
ATTTACATTCCACTAGTTAAGATAAAAC	CGTATTACTCAATTTGAGCATAATTATTCGAGGATT
ATTTACATTCCACTAGTTAAGATAAAAC	CAAGAATACCTTCAGCTAAATGTTGTAAAGGTTTCAA
ATTTACATTCCACTAGTTAAGATAAAAC	TATATAGGTTAGGAGGATTATTATGGTTTGTAAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TCTTTACCATTTAGTACTTACTATACCGAACCTTGA
ATTTACATTCCACTAGTTAAGATAAAAC	GTAACAAGATTACTAAATGTAAACATAATTTTTTGTA
ATTTACATTCCACTAGTTAAGATAAAAC	ACGAAATGGAATAAACAGTCGCTATATTCTTCTAGCAC
ATTTACATTCCACTAGTTAAGATAAAAC	TTATAGCCTTATCTAGCTCCGTTGTAGGATTATACTT
ATTTACATTCCACTAGTTAAGATAAAAC	CTCCAGCTTACATCACTTGTTCGCCTTACTCTACACC
ATTTACATTCCACTAGTTAAGATAAAAC	AGAATGCACCTTTTCTATTGTGCATCTCATTTTTGA
ATTTACATTCCACTAGTTAAGATAAAAC	TGAGATAGGAAGGTGGATTGTAGAAGGATTATGGAA
ATTTACATTCCACTAGTTAAGATAAAAC	AAGGCTATTTTTTCGTGTTAATAGATAACACATTGAT
ATTTACATTCCACTAGTTAAGATAAAAC	AGGCAAGTGCATAACTTAGTGCATACCCAATTTTGTA
ATTTACATTCCACTAGTTAAGATAAAAC	TGTGTTTGTTAACCCTACTACAAGAGGGATAAGAGA
ATTTACATTCCACTAGTTAAGATAAAAC	CTGCATTCTTAATTAAATCATCGACCACTTCCAAAT
ATTTACATTCCACTAGTTAAGATAAAAC	GCATACTATGAAAAGAGACCTATAACTATTTTAGGCAC
ATTTACATTCCACTAGTTAAGATAAAAC	AAGTTTATTAAGTCTATAAATACAACTGACTCTAAAAT
ATTTACATTCCACTAGTTAAGATAAAAC	AAACGCACCTAAATGGCGTAATTTGAACAATACTGAA
ATTTACATTCCACTAGTTAAGATAAAAC	TAGATATTATTCTAATTTAACTATGAATAGATATCGC
ATTTACATTCCACTAGTTAAGATAAAAC	CTTTAGTTGGATTGGTATTTCAAATAGACAATGCGTT
ATTTACATTCCACTAGTTAAGATAAAAC	TCAGGTTCAGTCAAAACCATATTGTAATTTGTTGTTAG
ATTTACATTCCACTAGTTAAGATAAAAC	GAATACAAATACACATAAAGAAAGTGTGCTGGCAAA
ATTTACATTCCACTAGTTAAGATAAAAC	CAATCACTAATAAACGGTCAGTTAACAGATAAGTCAAT
ATTTACATTCCACTAGTTAAGATAAAAC	TTACGTTCATAAAATATCACCTCAATCAAAGTAACTAG
ATTTACATTCCACTAGTTAAGATAAAAC	ATTTTGCCCACATACATGAGGGTGGTTATTGCTCAA
ATTTACATTCCACTAGTTAAGATAAAAC	AATTTAAAATTAGACTAGGAGATTATTTTGCCATGTA
ATTTACATTCCACTAGTTAAGATAAAAC	GTTTAACCTCGGCTTTTCTTATATACATGGAGGTAAGCA
ATTTACATTCCACTAGTTAAGATAAAAC	GAACCTGAAAAAAGTCAAACTCATTATAGAGTTCAAGT
ATTTACATTCCACTAGTTAAGATAAAAC	CCTTGTGTATCTCTTATGGTGAGATAGTCATATAGAC
ATTTACATTCCACTAGTTAAGATAAAAC	GAGCGAAACCCCCTCTACCCCCCTCGACACAATTT
ATTTACATTCCACTAGTTAAGATAAAAC	ATAATGAAATATACACTTACAAAGCTTTGTATCAAGA
ATTTACATTCCACTAGTTAAGATAAAAC	AAGAAAATAATATATAACTATATATACCCGGGCGTGTCA
ATTTACATTCCACTAGTTAAGATAAAAC	GGTGCTTTCTTGAAGCCATCATTATTAAGAAGCAAAG
ATTTACATTCCACTAGTTAAGATAAAAC	CTCGCTTAGAGGTTTAATGTCTTTATATCCTACAACAG
ATTTACATTCCACTAGTTAAGATAAAAC	GCAATTGCTGTAATCATTATCCATTTCATTTTGTT
ATTTACATTCCACTAGTTAAGATAAAAC	ATGAAATTGAACGGTTACGGAACGTATAATCCCTACTT
ATTTACATTCCACTAGTTAAGATAAAAC	TTAAAAAAATATTAAAAAACCTAACTATAATAATAGA
ATTTACATTCCACTAGTTAAGATAAAAC	AGTTTTAAACGAAAAACTTGTTGACAAATGCGGACAT
ATTTACATTCCACTAGTTAAGATAAAAC	TTAACATTTTTCAATGATTACACGAAAATAAAAATAAC
ATTTACATTCCACTAGTTAAGATAAAAC	AGAACTATGCTAATCCAAGAAGGGTTAAATCTAGATGC
ATTTACATTCCACTAGTTAAGATAAAAC	GAGCTAAAAACTCTATCCCAGCTCCCGTCTACATAAT
ATTTACATTCCACTAGTTAAGATAAAAC	GGAGGCTACAATTATGGAACGCTATAATATATGCGGT
ATTTACATTCCACTAGTTAAGATAAAAC	TTGGTGAGTTTGATGTAGAATCAAATATCATTTCACC
ATTTACATTCCACTAGTTAAGATAAAAC	TAACAAAAGTAACAAAATAACTGTTTTCACCTAAAAAT
ATTTACATTCCACTAGTTAAGATAAAAC	GCTGACCCTGCCAACAACTTGCAAGTTGTGGAAAATA
ATTTACATTCCACTAGTTAAGATAAAAC	GGATTGAGCATTATGCAAATGCCACTATCTAAAGAGAA
ATTTACATTCCACTAGTTAAGATAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP023671.1\|AYE33256.1\|372549_373284_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|187789
CP023671.1\|AYE33257.1\|373293_374169_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
CP023671.1\|AYE33261.1\|378080_380666_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379121
CP023671.1\|AYE33246.1\|349599_351291_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|273568
CP023671.1\|AYE33253.1\|365456_366677_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
CP023671.1\|AYE33260.1\|376730_377669_-\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
CP023671.1\|AYE33245.1\|348670_349606_-\|lipoate--protein-ligase	unknown	unknown	gnl\|CDD\|179655
CP023671.1\|AYE33249.1\|352681_353092_-\|UDP-N-acetylglucosamine-pyrophosphorylase	unknown	unknown	unknown
CP023671.1\|AYE33255.1\|368735_369719_-\|subtype-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
CP023671.1\|AYE33250.1\|353406_354537_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227628
CP023671.1\|AYE33252.1\|358508_359729_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
CP023671.1\|AYE33254.1\|368470_368734_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP023671.1\|AYE33247.1\|351373_351727_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
CP023671.1\|AYE33258.1\|374168_375860_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09665_cas8b2_CAS-I-B	gnl\|CDD\|187796
CP023671.1\|AYE33251.1\|355962_356247_-\|hypothetical-protein	unknown	unknown	unknown
CP023671.1\|AYE33244.1\|346949_348626_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378333
CP023671.1\|AYE33262.1\|381027_382248_-\|peptidase-T	unknown	unknown	gnl\|CDD\|235484
CP023671.1\|AYE33248.1\|351798_352242_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP023671.1\|AYE33259.1\|375871_376606_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
CP023671.1\|AYE33243.1\|345197_346826_+\|aspartate-4-decarboxylase	unknown	unknown	gnl\|CDD\|163513

Protein	Function_ID	Function_description	E-value
CP023671.1\|AYE33256.1\|372549_373284_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|187789	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.51983e-23
CP023671.1\|AYE33257.1\|373293_374169_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.37257e-57
CP023671.1\|AYE33246.1\|349599_351291_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	0
CP023671.1\|AYE33253.1\|365456_366677_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.43976e-124
CP023671.1\|AYE33245.1\|348670_349606_-\|lipoate--protein-ligase	gnl\|CDD\|179655	PRK03822, lplA, lipoate-protein ligase A; Provisional.	2.2733e-75
CP023671.1\|AYE33260.1\|376730_377669_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.59056e-26
CP023671.1\|AYE33261.1\|378080_380666_-\|hypothetical-protein	gnl\|CDD\|379121	pfam13320, DUF4091, Domain of unknown function (DUF4091). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 70 amino acids in length. There is a single completely conserved residue G that may be functionally important.	4.30147e-19
CP023671.1\|AYE33250.1\|353406_354537_+\|hypothetical-protein	gnl\|CDD\|227628	COG5316, COG5316, Uncharacterized conserved protein [Function unknown].	2.22121e-27
CP023671.1\|AYE33252.1\|358508_359729_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	4.40552e-125
CP023671.1\|AYE33254.1\|368470_368734_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.3328e-25
CP023671.1\|AYE33247.1\|351373_351727_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	5.589e-25
CP023671.1\|AYE33258.1\|374168_375860_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	8.21612e-14
CP023671.1\|AYE33255.1\|368735_369719_-\|subtype-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	5.55785e-156
CP023671.1\|AYE33244.1\|346949_348626_+\|hypothetical-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	4.65653e-33
CP023671.1\|AYE33262.1\|381027_382248_-\|peptidase-T	gnl\|CDD\|235484	PRK05469, PRK05469, tripeptide aminopeptidase PepT.	0
CP023671.1\|AYE33248.1\|351798_352242_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	5.11007e-19
CP023671.1\|AYE33259.1\|375871_376606_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	7.09397e-25
CP023671.1\|AYE33243.1\|345197_346826_+\|aspartate-4-decarboxylase	gnl\|CDD\|163513	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). [Energy metabolism, Amino acids and amines].	0

>CP023671.1|AYE33252.1|358508_359729_-|IS256-family-transposase
MSFSKEELIKILAKDPNIKTAEDIQNVLKDLFGGMLQQMLEAELDNHLGYEKHDYQNKNTTNSRNGKSRKTMKSNLGYFDLDVPRDREGSFEPEIVKKHQTDVSHLESSIIGMYAKGMTTRDIASQVNEIYGMDISPTLVSNITDKVIPMIREWQSRPLETVYPIVFMDAIHFKVRKDNTVVSKAAYAAIGVNIEGKKDVLGIWIGASESSKYWLLVLNELKNRGVKDILIASVDGLVGFNEAIRAVYPNTEIQRCIIHQIRNSSKYLSYKDLKAFNADLKLVYTASTEEVALAELDRLEEKWGEKYLIAVRSWRNNWNELSTFFKYPPEIRKIIYTTNAMESYNRQLRKVTKTKSIFPNDESLMKILYLATVDITKKWTQSIRGWAQILAQLSIFFEGRLDDQLF
>CP023671.1|AYE33251.1|355962_356247_-|hypothetical-protein
MYSFILEVLFIMVPLAISLIIYMKIDKKYAITNIISLKLGIKREWMAFFCFCFTILIMLTINMINEYVINILPIVYFILGGIFTGMVVGVKYSK
>CP023671.1|AYE33250.1|353406_354537_+|hypothetical-protein
MFIKSCNNQNKELTLSIYNNNVALVNELRDLFKGKVINTIEYCDISKFIYENSVIIENVEVSQLNFNYKCCNNDKNKSENSSCNDCLSSFVNSIDIEVDSINSKNIRVYYLTAGVKWDSSYTLILNENKLSMQSWINISNKSGISYNHANLKCISGEVNFDSLSPIPYSKTSYANSEAVENPKLQPLDDYYIYNLSGKYILENNSTKRIKNFSAENIEYTKLYDFGYYNTNADILIKLNNTEDNNLGIPMPSGTVNIYASLNDSLQFLGSDSIKNTPINQELNLNIGKAFDITCERKIINYQKYDNYEFKEIELIINNSKDEDVPIKICYPIFAPWEITSTTDNYEKDSNGNPCFKVKVSANSKKRILFTYKTKIS
>CP023671.1|AYE33249.1|352681_353092_-|UDP-N-acetylglucosamine-pyrophosphorylase
MKYELTIYELGKLLKNIDSKYNISLLSKIKLSGGWMTMTGEISVIDVPTEAILLKGNNIITLKLKNNNENGSEIKITGLKDSKFVIDISATKYKEIKPGMLNLDVIKVNNNQCKLRIDEDMIFTIDTSVDKVIKCL
>CP023671.1|AYE33248.1|351798_352242_-|MarR-family-transcriptional-regulator
MFRLEECVGFITSTASKELSDEFNRRLLLKGSTRVQWIALYYIGNEKGISQKVLADKINVKESTIVRLIDRMEKEGIVKREKEETDRRVTNIFLTEKGENLKEELLPLGEKFSDDITKGIKQEHIDIFNSVLRKMVLNINMNVDNIT
>CP023671.1|AYE33247.1|351373_351727_-|carboxymuconolactone-decarboxylase-family-protein
MKKDPRQMLNDFMQGLNSVGETNGENVQAFMNLLGATYSEGKLTTKTKELISVAIAAYNRCEYCIVFHVYKALEAGANREEIMEAAMVAVAFGGGPSMAYSTTLLKDSIDEFEKDFK
>CP023671.1|AYE33246.1|349599_351291_-|dihydrolipoyl-dehydrogenase
MDIKLESLTGHDKSAKVGKINVSIGDMVEINTVLLQVETGKGNSPIKAKGSYKIKEIKVNEGEEVKIGDTLIKVEVLEENNSNKNNFNYFGNMIKGKDEKIETDLIVIGAGPGGYVSAIYAAKRGLKVVSIEKENLGGTCLNVGCIPTKALVKSSEVYYNLVNCNEFGLECENPKVNMGKIIDRKDKIKNTLVSGIDYLLNKNEVKQIKGEASFKDKRTIEVKSGRDKYSITGKNIIIATGSKISKINIKGIEEPFVLNSTTALSSKEKPKSITIIGGGVIGMEFAFMYSNLGVKVNVVEFADRLLTMVDSEISEEIKNIAEKKGITIFNSSKVSRIEKTENGEALVIFNKGEEEKYIVSEKVLVAIGREPNIEGLEIENANIKLNENLRGIEVSETLETNIDGIYAIGDVNNIMQLAHIASHQGIVAVDNILGENKTVDYSAVPNVIFTYPEIASVGLTEDQAKNNDIKYKTSKFYFQGNGKALTMGENEGFIKLVKDIEKDKIIGASIIGPDASSLVSTLTLIIKNNIKEDGIIETIFAHPTTGEVIHEAALELGIGGLHC
>CP023671.1|AYE33245.1|348670_349606_-|lipoate--protein-ligase
MLKNIIVISKSTDPYCNLAMEEYIFNNIKKNEVIFYLWQNHKTVVIGRNQNPYIECDVDYIEGNGAKIARRMSGGGTVYHDLGNLNFTFVTSKENHNIEKQILVIRKAIEKFGLSVDKSGRNDLTINNKKFSGHAFYEDDNKMFHHGTIMIDVDKLELNNILKPSKIKLKSKGIDSVKSRVINLKECNNDITLNDVFKNLIESFKEVYGEVYSIRETIGKEVKGNLLEKYKNHKWVYGESPEFNVNLETPTDIGNIQILMDIKDNVVKKVRVYSDSLNQISFSDLEQLIVKQEFNRENILKTVYYFLESFK
>CP023671.1|AYE33244.1|346949_348626_+|hypothetical-protein
MKKLFSILTIIFIFAFPNVVSATTKEYYIDNVNIQAEILQNGDVNVTENLGYDFNGDFNGIFRNLKLNNTLGYKISEVYSIDENGHKQLISEADNEADYTYKLIDNGDSIQIKVFCPSSNEKKSFFFNYTIEKAAKKYSDLSQLYWNFYTVENVSSIKEGSLNLSLNNSNFDSSVFHYDVFGDGDFETTYNDKSVSVNFKNLTSLLGIKLNFQKEFLNDIPEINSTAPTEVESQYQSSTDLNGKCIAFIALFISLGLGGIGFGFFINKLKFKKELEKYRSKFTFIPNEIYVEPPSSTSPALIDLLMNEKVVSKEILTPTLFYLVKKGYYTISESTYYSGKNKSNNLKEDLIFTRVHSKGLPKENHLVFLIDWFSMYEVNGSFSLQKIKKRIQSQSEAQKFINKLNEWIAEVFEDADSYTFFKTIGNKRILRNKYYNEKLKWLSYKNYLINSKENLEHKNLTNIDDPLIYATALDIDYDDIKVILNSLSKDIKRNSSEIPEFSYLYCNNYLFYSLLVNDINGDAHINIDNSPNSTSSSFGGFSSGSGFTGGGGGGSGAF
>CP023671.1|AYE33243.1|345197_346826_+|aspartate-4-decarboxylase
MKNRNLQREEIENIYGKISPFEFKNKLINLANGEKEKSARTLLDAGRGNPNWTASTPRQSFFTFGQFAVEESQRVIKNGDLAGMPQKDGIYKRFKEFISKNNSAPGISLLNNIIDYGVNKKSFNPDDFVYELADGIIGDNYPFPDRMLTHIEEIVHDYLVQEMCYNKLPTGKFNIFAVEGATAAMCYIFDTLKSNNLLKSRDKIAIMVPIFTPYLEIPHLPRYNLEVIYIKANELTKDHAHTWQYPKNELEKLKDSSIKALFFVNPSNPPSVSINKEGRELLVHIVKNYNKDLMIISDDVYGTFVNDFRSLMADLPYNTIGVYSLSKYFGVTGWRLGTLALHENNVFDKLLKNLSNEEKAILNKRYGDMNLNPESIPFIDRIVADSRQVALNHTAGLSTPQQVQMAFFCAFSLLDKENIYKNLTIDICHRRKKLLFEGLGLDLTEDPYDAAYYTEFDLLEWATNYYGDNFSRYLENNFKLVDVLYKLAEESSIVLLSGSGFQGPEWSIRISLANLNDEAYSTIGKVLHKILEGFVIDWKNSL
>CP023671.1|AYE33253.1|365456_366677_-|IS256-family-transposase
MSFSKKELIKILAKDPNIKTAEDIQNVLKDLFGGMLQQMLEAELDNHLGYEKHDYQNKNTTNSRNGKSRKTMKSNLGYFDLDVPRDREGSFEPEIVKKHQTDVSHLESSIIGMYAKGMTTRDIASQVNEIYGMDISPTLVSNITDKVIPMIREWQSRPLETVYPIVFMDAIHFKVRKDNTVVSKAAYAAIGVNIEGKKDVLGIWIGASESSKYWLLVLNELKNRGVKDILIASVDGLVGFNEAIRAVYPNTEIQRCIIHQIRNSSKYLSYKDLKAFNADLKLVYTASTEEVALAELDRLEEKWGEKYLIAVRSWRNNWNELSTFFKYPPEIRKIIYTTNAMESYNRQLRKVTKTKSIFPNDESLMKILYLATVDITKKWTQSIRGWAQILAQLSIFFEGRLDDQLF
>CP023671.1|AYE33254.1|368470_368734_-|CRISPR-associated-endonuclease-Cas2
MFVIITYDVNEKRVNRVRKILKKYVTWTQNSVFEGEITEGKLTKCLAEVKKNLVSAEDSLYIYRVSYSKNITKDVVGVEKNLDELFI
>CP023671.1|AYE33255.1|368735_369719_-|subtype-I-B-CRISPR-associated-endonuclease-Cas1
MGKDYYVFSPGRIKRKDNTIYFINTDEEKRGIPIESIERIHFFSEVDLNSKFINYISQYKIILNFYNYYGFYSGSYYPRKKNVSGFLLVEQAVAYKDLESRLFLAKAFIDSAIHHILRNMRRYDKVPNEYFEKIAEEKERMLKANSIPEIMGAEGRIRKIYYESYQYILKNDFGFTNRNRRPPKDPLNALISFGNSVMYTAILGEVYQTQLDPTISYLHEPSTKRFSLILDISEIFKPLIIDTIIFSLINNRRLNNKDFTNEEGVCFLNDEGKKKFLTEFEKKMATSIKHRKLKRSVSYRQLIKLEGYKIIKHLINDEKYKPLKAWW
>CP023671.1|AYE33256.1|372549_373284_-|type-I-B-CRISPR-associated-protein-Cas5
MKRAVRLEIYQNLVNYKKPTSFQLKETYPLPPPSTVIGMVHFACDYKSYIPMNIGIQGEYNSKINDLYTRYEFAGASYEADRHNVKIDSKEQGKSYGMMRGISTAELLVDCNLVLYIQPEDDSKVEEIFEAFKNPREYISLGRREDLVQINKVEIVELKEVELEENMPLEMDSYIPVSLKNDIKSNATLYTLNKDYTLRTIKKGVETRSWNKIKVIHAVKGSTVIDEYTSLNKDLVNNSVVFLL
>CP023671.1|AYE33257.1|373293_374169_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MEKKGLTASFIFEAESANYGEGVGNVTALKKISRGDGEAYSYISRQAIRYNIINQMGEDNTPLGLDGEVLQFHTDATIKDYPEIDFFGYMKTIKPIRTRSAVVRLSNAVALESFNADTEFLTNKGLLDRYNKDLKDKKNGGNIAQSEIHKSYYSYTITIDLDKVGIDENDNIEISNEEKAKRVNKLLDTILFLYRDIRGRRENLSPIFAIGGVYSIKNPFFENRLKIKNNSLRIETINSILDLNEDINNNTNIGLLKGIFNNDESIENALKPIEIGEFFKELKSKVTEYYK
>CP023671.1|AYE33258.1|374168_375860_-|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MAKVRIELSDWMKNAGIVGFVKIINHRLNGSSQIDLKSNYIEFDTEILENFEEVYFEYLIYKYKEFISIEKIVSKYDYINLLLSKEVDEKDLAILNSHIKYTKERLKSASYKSAYEIINDSSYNLLEKEKQLKEIKIKKKQSISDVSEDIKLQCNLLKEIIEYLNEENVRKIIAAKNVIYDVIQGFWSDVSFLNKNNNKKNMYECYINDFINPVINYESSNLEKAKYTCFTCDNKIQKLSKPFAYDITWITKMGVDGSRKSSHYWNFQSDSNICPICNLIYSCIPAGFSVLNGKGLFINNNKSISKIISANNLILYSGKKIDELEQESYFNIIDSMEDKSVNEVNSEIENIQIVKFDKSNNSRPYTFNVLSKNKLEIISKNKKQLSALIGKSVKIAKDYYINIYSEVILRIYNGKNLFDLIALLTRLRISGEYKNSKIIYILISLNNNLMEGKYKVWYKDIDKFRDYGIKLRQIYGRNDENKIPGIAYRLQNALKVKNESRFMDTLLNAYTSRKQPIPIDFIEALKDVNKFQTIGYAFLIGLQGGLENRNQENNGNNIEEDNK
>CP023671.1|AYE33259.1|375871_376606_-|CRISPR-associated-endoribonuclease-Cas6
MRILVEIITEKIPLNNNRYLTLSLIKNVLEKQSPELFKAMYEDDENYNYRTKPFTYSLKLNDFKIVGDEFELKGNSTISISTPDPVLGSILYNGFLLTKEYEYNKKYKLSIGRVTLLKEKKVISNEVLFKTLSPLVIKNRRGEFLKIDNENYEKELNYIANKVLESYRGFGLKESLIFQPILMKKRVAKEKIEKFTKETNKDIFYITGYEGVFKLTGNKEDLNLIYNLGLGVRRSSGFGMLQIV
>CP023671.1|AYE33260.1|376730_377669_-|WYL-domain-containing-protein
MSSLGNLLKMLYILKRGQKVKVKDLAEELEVDHRQIRRYKEELSEYFDIQSITGPNGGYILCDEYFPFKDILTEKEINNLKRAIDTVSYSEEYELGKAIDKINFTILNSQSESLISEQIIPYSRPKMEIEKINKMYNEINLSILSCKEIIIVYVDNKGSLTRRAIQPHKFLRFKGEYYIIATCKLRNEIRYFKLVRIKEYILTEKRFEKMKNIDELINEYKENSIGIFGGNEIEVELEINPPMANTIKERIWVDNQEVIELEDGKILFKAIMKLGPELISWVLSMGDSVKINSSEELKRQVRIKVENIFKNL
>CP023671.1|AYE33261.1|378080_380666_-|hypothetical-protein
MRVEESKNLNIKLSVLITLFMIFSLFSNLSTPIQAETTRKEYVTTVNDHTIGDELFQFKFSSGWIESTGVNSFYNGDEYWTNATKSFQPSYRLKFYGNKVELYGVKEQTSAICEVSIDGGDIEEVDPYNPTRVTGQKIYEKSGLTDDEHILELKITYRKNQASKNYNGEIDFAKVYHKEIPATGVEMNKESIQIEVGMTDSIKAKVLPSYSTEKNIVYLVEDESIATITEDGEITGIKEGKTNIIATIEGTEIVGKTHLTIIKAGLPLGASIGSTDFHYLQKNYDDIKSLNKTTWNDIAWIGDELNSKIVTWTKDSNVNNVIISSSNFANENGDVIGSINVEISWLKETLANIGRGNPSAPVELFPDIIHNKGDLDIEANKVASAWVNITIPRDAKPGIYNGTITVSAEGLDTPYVFNYSFEVVNLVQPLPKETKTQMEIWQHPYAVARYYGVQKEELFTENHFKYLRPSLEEYRDMGGRGVIAHIVEEAWNHQSYDSDPSMVKWTKSLDGTFKFDYIDFDRWIQFNIDLGIINPKDGFGQIKCYSIVPWNNRIEYYNELTGEKESINPTPGTAEWRVPWTEFLSNFMNHLEEKGWFNITYISMDERSMKDLIASVDLIENIRNSNGESFKISSAMNYQSGNDYSFLDKIDDISIGLSHINHNSEDMKNMAKHRQEAGLLTTIYTCTGDYPNSFTISDSSESAWTMWYSLSQNTDGFMRWSWDGWVEDPLENVSYKYWEPGDPWLIYPAEKNSETKTFYSTPRYERLKEGIRDINKAKYLMENSKELKGEIEALVKSLKRANKGNNGYGSAVAATEKDRELTNNEVKRMRNGINDFAKQYIESKGVSVESVASKHMGNMLY
>CP023671.1|AYE33262.1|381027_382248_-|peptidase-T
MKKVEERFLEYIKIDTKSDETTGLTPSTKGQLKLAEILAEELKKIGVNKVEISENGYVYAVLEKNCDKNIPTIGFIAHMDTAPDYCGLNVNPQIVQNYDGGDIKLNDEVILSPKFSPELRDYIGKTLITTDGTTLLGADDKAGIAEIMTAIEYLVNHPEIKHGDIKIGFTPDEEIGEGADHFNVEMFKADFAYTIDGGAIGELEFENFNAAGVKVEIKGVNVHPGYAKNKMINSIMVAHEFINKLPLNEVPEKTEKYEGFSHLTDIKGSIEKTTLDFIIRDFFADTFEERKEKFKEIEKELNEVYGEGVVTVKVKEQYRNMKEKIEPIMHIVETAKKAMEDANVTPKVKPIRGGTDGARLSYMGLPTPNLFAGGENFHGKYEYIPIESMEKAVEVILNIVRIYSEK

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Crispr_ID: CP023671_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023671_3

366769-368289

Unclear

Consensus_repeat	Method
ATTTACATTCCACTAGTTAAGATAAAAC	PILER-CR
ATTTACATTCCACTAGTTAAGATAAAAC	CRISPRCasFinder
ATTTACATTCCACTAGTTAAGATAAAAC	CRT

23 spacers

cas2,cas1,cas5,cas7,cas8b2,cas6,WYL

The CRISPR arrays of CP023671_3

>merge|CP023671|3|366769-368289|PILER-CR,CRISPRCasFinder,CRT
ATTTACATTCCACTAGTTAAGATAAAACTAGTTCTTTGTCTATAGTAAAAGTTTTAGCTATCTCGATTTACATTCCACTAGTTAAGATAAAACAGTTCCAGCCCATACTCTGTTTGCATTCTTTGTTTGCATTTACATTCCACTAGTTAAGATAAAACCCTGTTACTTTTGATGATCAGATGAGTGCTATGAATATTTACATTCCACTAGTTAAGATAAAACTATAAACACCAACTTAAACAAAAATGTTGAACTAAGATTTACATTCCACTAGTTAAGATAAAACTTCCGTTGTTCTAAAGCCTATAGTAATCATTCCTATATTTACATTCCACTAGTTAAGATAAAACTTTTTATTACTACCTTTGGCTATCAAATTGCTACCTTATTTACATTCCACTAGTTAAGATAAAACAAGGAGAATTTTTTATGAAACTTTTAGGATTAGATAAATTTACATTCCACTAGTTAAGATAAAACGAGTAGGTTTTAAATTAATCTACTCTTTTTAATTTGTATTTACATTCCACTAGTTAAGATAAAACTTATACTAGATCCACTTATTGAACTTCTACATGATGAATTTACATTCCACTAGTTAAGATAAAACCAGCTTTCGACTTCTTATCAGTCTTTAAGCTCTGTAATTTACATTCCACTAGTTAAGATAAAACATTGTTTGTATCCCTATCTCTCCATTCTCTTTAGATAAATTTACATTCCACTAGTTAAGATAAAACGGAGGTATTTATCAGTCAGTAACAGATGGTATAGCACATTTACATTCCACTAGTTAAGATAAAACAGCACCTTACTTTGAAGGGCAATATATTAAGCTACAATTTACATTCCACTAGTTAAGATAAAACAAAAACCTAACTATAATAATCGACGGGAGAGAGCAAAATTTACATTCCACTAGTTAAGATAAAACTATGGAGCAATTTAAAAAAGGGAACGATATGGAAAGGATTTACATTCCACTAGTTAAGATAAAACGAGCAACTAGAAGCAAATCTAAATCAAGAGAAAGAGGGATTTACATTCCACTAGTTAAGATAAAACGCTAGTTAGACTTTCGGGGGCTATATTTAAGGCTGTAAATTTACATTCCACTAGTTAAGATAAAACTCAATAATATGTTATAATATAGTATAGGAGTTTGATAATTTACATTCCACTAGTTAAGATAAAACGGAAAAAAGCTAAACAATGGTTATTTAGCATATAAGGATTTACATTCCACTAGTTAAGATAAAACGAATAGAAGGCAGTAAATTAGTTGTTTATTCTATGGTATTTACATTCCACTAGTTAAGATAAAACGTTGACGATATTAATTAAAAGTGGTATTATTAAATCAATTTACATTCCACTAGTTAAGATAAAACTAGTATGAACAAGGATAGATTTAAGAATATTTACTTTATTTACATTCCACTAGTTAAGATAAAACTATGTGTGAACATTGTAAAGAAAATAAAAGATTTGATATTTACATTCCACTAGTTAAGATAAAAC

>CP023671|3|3|366769-368289|PILER-CR
ATTTACATTCCACTAGTTAAGATAAAAC	TAGTTCTTTGTCTATAGTAAAAGTTTTAGCTATCTCG
ATTTACATTCCACTAGTTAAGATAAAAC	AGTTCCAGCCCATACTCTGTTTGCATTCTTTGTTTGC
ATTTACATTCCACTAGTTAAGATAAAAC	CCTGTTACTTTTGATGATCAGATGAGTGCTATGAAT
ATTTACATTCCACTAGTTAAGATAAAAC	TATAAACACCAACTTAAACAAAAATGTTGAACTAAG
ATTTACATTCCACTAGTTAAGATAAAAC	TTCCGTTGTTCTAAAGCCTATAGTAATCATTCCTAT
ATTTACATTCCACTAGTTAAGATAAAAC	TTTTTATTACTACCTTTGGCTATCAAATTGCTACCTT
ATTTACATTCCACTAGTTAAGATAAAAC	AAGGAGAATTTTTTATGAAACTTTTAGGATTAGATAA
ATTTACATTCCACTAGTTAAGATAAAAC	GAGTAGGTTTTAAATTAATCTACTCTTTTTAATTTGT
ATTTACATTCCACTAGTTAAGATAAAAC	TTATACTAGATCCACTTATTGAACTTCTACATGATGA
ATTTACATTCCACTAGTTAAGATAAAAC	CAGCTTTCGACTTCTTATCAGTCTTTAAGCTCTGTA
ATTTACATTCCACTAGTTAAGATAAAAC	ATTGTTTGTATCCCTATCTCTCCATTCTCTTTAGATAA
ATTTACATTCCACTAGTTAAGATAAAAC	GGAGGTATTTATCAGTCAGTAACAGATGGTATAGCAC
ATTTACATTCCACTAGTTAAGATAAAAC	AGCACCTTACTTTGAAGGGCAATATATTAAGCTACA
ATTTACATTCCACTAGTTAAGATAAAAC	AAAAACCTAACTATAATAATCGACGGGAGAGAGCAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TATGGAGCAATTTAAAAAAGGGAACGATATGGAAAGG
ATTTACATTCCACTAGTTAAGATAAAAC	GAGCAACTAGAAGCAAATCTAAATCAAGAGAAAGAGGG
ATTTACATTCCACTAGTTAAGATAAAAC	GCTAGTTAGACTTTCGGGGGCTATATTTAAGGCTGTAA
ATTTACATTCCACTAGTTAAGATAAAAC	TCAATAATATGTTATAATATAGTATAGGAGTTTGATA
ATTTACATTCCACTAGTTAAGATAAAAC	GGAAAAAAGCTAAACAATGGTTATTTAGCATATAAGG
ATTTACATTCCACTAGTTAAGATAAAAC	GAATAGAAGGCAGTAAATTAGTTGTTTATTCTATGGT
ATTTACATTCCACTAGTTAAGATAAAAC	GTTGACGATATTAATTAAAAGTGGTATTATTAAATCA
ATTTACATTCCACTAGTTAAGATAAAAC	TAGTATGAACAAGGATAGATTTAAGAATATTTACTTT
ATTTACATTCCACTAGTTAAGATAAAAC	TATGTGTGAACATTGTAAAGAAAATAAAAGATTTGAT
ATTTACATTCCACTAGTTAAGATAAAAC

>CP023671|3|3|366769-368289|CRISPRCasFinder
ATTTACATTCCACTAGTTAAGATAAAAC	TAGTTCTTTGTCTATAGTAAAAGTTTTAGCTATCTCG
ATTTACATTCCACTAGTTAAGATAAAAC	AGTTCCAGCCCATACTCTGTTTGCATTCTTTGTTTGC
ATTTACATTCCACTAGTTAAGATAAAAC	CCTGTTACTTTTGATGATCAGATGAGTGCTATGAAT
ATTTACATTCCACTAGTTAAGATAAAAC	TATAAACACCAACTTAAACAAAAATGTTGAACTAAG
ATTTACATTCCACTAGTTAAGATAAAAC	TTCCGTTGTTCTAAAGCCTATAGTAATCATTCCTAT
ATTTACATTCCACTAGTTAAGATAAAAC	TTTTTATTACTACCTTTGGCTATCAAATTGCTACCTT
ATTTACATTCCACTAGTTAAGATAAAAC	AAGGAGAATTTTTTATGAAACTTTTAGGATTAGATAA
ATTTACATTCCACTAGTTAAGATAAAAC	GAGTAGGTTTTAAATTAATCTACTCTTTTTAATTTGT
ATTTACATTCCACTAGTTAAGATAAAAC	TTATACTAGATCCACTTATTGAACTTCTACATGATGA
ATTTACATTCCACTAGTTAAGATAAAAC	CAGCTTTCGACTTCTTATCAGTCTTTAAGCTCTGTA
ATTTACATTCCACTAGTTAAGATAAAAC	ATTGTTTGTATCCCTATCTCTCCATTCTCTTTAGATAA
ATTTACATTCCACTAGTTAAGATAAAAC	GGAGGTATTTATCAGTCAGTAACAGATGGTATAGCAC
ATTTACATTCCACTAGTTAAGATAAAAC	AGCACCTTACTTTGAAGGGCAATATATTAAGCTACA
ATTTACATTCCACTAGTTAAGATAAAAC	AAAAACCTAACTATAATAATCGACGGGAGAGAGCAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TATGGAGCAATTTAAAAAAGGGAACGATATGGAAAGG
ATTTACATTCCACTAGTTAAGATAAAAC	GAGCAACTAGAAGCAAATCTAAATCAAGAGAAAGAGGG
ATTTACATTCCACTAGTTAAGATAAAAC	GCTAGTTAGACTTTCGGGGGCTATATTTAAGGCTGTAA
ATTTACATTCCACTAGTTAAGATAAAAC	TCAATAATATGTTATAATATAGTATAGGAGTTTGATA
ATTTACATTCCACTAGTTAAGATAAAAC	GGAAAAAAGCTAAACAATGGTTATTTAGCATATAAGG
ATTTACATTCCACTAGTTAAGATAAAAC	GAATAGAAGGCAGTAAATTAGTTGTTTATTCTATGGT
ATTTACATTCCACTAGTTAAGATAAAAC	GTTGACGATATTAATTAAAAGTGGTATTATTAAATCA
ATTTACATTCCACTAGTTAAGATAAAAC	TAGTATGAACAAGGATAGATTTAAGAATATTTACTTT
ATTTACATTCCACTAGTTAAGATAAAAC	TATGTGTGAACATTGTAAAGAAAATAAAAGATTTGAT
ATTTACATTCCACTAGTTAAGATAAAAC

>CP023671|3|3|366769-368289|CRT
ATTTACATTCCACTAGTTAAGATAAAAC	TAGTTCTTTGTCTATAGTAAAAGTTTTAGCTATCTCG
ATTTACATTCCACTAGTTAAGATAAAAC	AGTTCCAGCCCATACTCTGTTTGCATTCTTTGTTTGC
ATTTACATTCCACTAGTTAAGATAAAAC	CCTGTTACTTTTGATGATCAGATGAGTGCTATGAAT
ATTTACATTCCACTAGTTAAGATAAAAC	TATAAACACCAACTTAAACAAAAATGTTGAACTAAG
ATTTACATTCCACTAGTTAAGATAAAAC	TTCCGTTGTTCTAAAGCCTATAGTAATCATTCCTAT
ATTTACATTCCACTAGTTAAGATAAAAC	TTTTTATTACTACCTTTGGCTATCAAATTGCTACCTT
ATTTACATTCCACTAGTTAAGATAAAAC	AAGGAGAATTTTTTATGAAACTTTTAGGATTAGATAA
ATTTACATTCCACTAGTTAAGATAAAAC	GAGTAGGTTTTAAATTAATCTACTCTTTTTAATTTGT
ATTTACATTCCACTAGTTAAGATAAAAC	TTATACTAGATCCACTTATTGAACTTCTACATGATGA
ATTTACATTCCACTAGTTAAGATAAAAC	CAGCTTTCGACTTCTTATCAGTCTTTAAGCTCTGTA
ATTTACATTCCACTAGTTAAGATAAAAC	ATTGTTTGTATCCCTATCTCTCCATTCTCTTTAGATAA
ATTTACATTCCACTAGTTAAGATAAAAC	GGAGGTATTTATCAGTCAGTAACAGATGGTATAGCAC
ATTTACATTCCACTAGTTAAGATAAAAC	AGCACCTTACTTTGAAGGGCAATATATTAAGCTACA
ATTTACATTCCACTAGTTAAGATAAAAC	AAAAACCTAACTATAATAATCGACGGGAGAGAGCAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TATGGAGCAATTTAAAAAAGGGAACGATATGGAAAGG
ATTTACATTCCACTAGTTAAGATAAAAC	GAGCAACTAGAAGCAAATCTAAATCAAGAGAAAGAGGG
ATTTACATTCCACTAGTTAAGATAAAAC	GCTAGTTAGACTTTCGGGGGCTATATTTAAGGCTGTAA
ATTTACATTCCACTAGTTAAGATAAAAC	TCAATAATATGTTATAATATAGTATAGGAGTTTGATA
ATTTACATTCCACTAGTTAAGATAAAAC	GGAAAAAAGCTAAACAATGGTTATTTAGCATATAAGG
ATTTACATTCCACTAGTTAAGATAAAAC	GAATAGAAGGCAGTAAATTAGTTGTTTATTCTATGGT
ATTTACATTCCACTAGTTAAGATAAAAC	GTTGACGATATTAATTAAAAGTGGTATTATTAAATCA
ATTTACATTCCACTAGTTAAGATAAAAC	TAGTATGAACAAGGATAGATTTAAGAATATTTACTTT
ATTTACATTCCACTAGTTAAGATAAAAC	TATGTGTGAACATTGTAAAGAAAATAAAAGATTTGAT
ATTTACATTCCACTAGTTAAGATAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP023671.1\|AYE33256.1\|372549_373284_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|187789
CP023671.1\|AYE33257.1\|373293_374169_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
CP023671.1\|AYE33261.1\|378080_380666_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379121
CP023671.1\|AYE33246.1\|349599_351291_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|273568
CP023671.1\|AYE33263.1\|382342_383407_-\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|200569
CP023671.1\|AYE33253.1\|365456_366677_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
CP023671.1\|AYE33245.1\|348670_349606_-\|lipoate--protein-ligase	unknown	unknown	gnl\|CDD\|179655
CP023671.1\|AYE33249.1\|352681_353092_-\|UDP-N-acetylglucosamine-pyrophosphorylase	unknown	unknown	unknown
CP023671.1\|AYE33255.1\|368735_369719_-\|subtype-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
CP023671.1\|AYE33250.1\|353406_354537_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227628
CP023671.1\|AYE33252.1\|358508_359729_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
CP023671.1\|AYE33254.1\|368470_368734_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP023671.1\|AYE33247.1\|351373_351727_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
CP023671.1\|AYE33258.1\|374168_375860_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09665_cas8b2_CAS-I-B	gnl\|CDD\|187796
CP023671.1\|AYE33251.1\|355962_356247_-\|hypothetical-protein	unknown	unknown	unknown
CP023671.1\|AYE33244.1\|346949_348626_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378333
CP023671.1\|AYE33262.1\|381027_382248_-\|peptidase-T	unknown	unknown	gnl\|CDD\|235484
CP023671.1\|AYE33248.1\|351798_352242_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP023671.1\|AYE33259.1\|375871_376606_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
CP023671.1\|AYE33260.1\|376730_377669_-\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|379100

Protein	Function_ID	Function_description	E-value
CP023671.1\|AYE33256.1\|372549_373284_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|187789	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.51983e-23
CP023671.1\|AYE33257.1\|373293_374169_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.37257e-57
CP023671.1\|AYE33246.1\|349599_351291_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	0
CP023671.1\|AYE33263.1\|382342_383407_-\|polysaccharide-deacetylase	gnl\|CDD\|200569	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins. This family is represented by a putative polysaccharide deacetylase PgdA from the oral pathogen Streptococcus mutans (SmPgdA) and Bacillus subtilis YheN (BsYheN), which are members of the carbohydrate esterase 4 (CE4) superfamily. SmPgdA is an extracellular metal-dependent polysaccharide deacetylase with a typical CE4 fold, with metal bound to a His-His-Asp triad. It possesses de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. SmPgdA plays a role in tuning cell surface properties and in interactions with (salivary) agglutinin, an essential component of the innate immune system, most likely through deacetylation of an as-yet-unidentified polysaccharide. SmPgdA shows significant homology to the catalytic domains of peptidoglycan deacetylases from Streptococcus pneumoniae (SpPgdA) and Listeria monocytogenes (LmPgdA), both of which are involved in the bacterial defense mechanism against human mucosal lysozyme. The Bacillus subtilis genome contains six polysaccharide deacetylase gene homologs: pdaA, pdaB (previously known as ybaN), yheN, yjeA, yxkH and ylxY. The biological function of BsYheN is still unknown. This family also includes many uncharacterized polysaccharide deacetylases mainly found in bacteria.	4.55974e-79
CP023671.1\|AYE33253.1\|365456_366677_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.43976e-124
CP023671.1\|AYE33245.1\|348670_349606_-\|lipoate--protein-ligase	gnl\|CDD\|179655	PRK03822, lplA, lipoate-protein ligase A; Provisional.	2.2733e-75
CP023671.1\|AYE33261.1\|378080_380666_-\|hypothetical-protein	gnl\|CDD\|379121	pfam13320, DUF4091, Domain of unknown function (DUF4091). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 70 amino acids in length. There is a single completely conserved residue G that may be functionally important.	4.30147e-19
CP023671.1\|AYE33250.1\|353406_354537_+\|hypothetical-protein	gnl\|CDD\|227628	COG5316, COG5316, Uncharacterized conserved protein [Function unknown].	2.22121e-27
CP023671.1\|AYE33252.1\|358508_359729_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	4.40552e-125
CP023671.1\|AYE33254.1\|368470_368734_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.3328e-25
CP023671.1\|AYE33247.1\|351373_351727_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	5.589e-25
CP023671.1\|AYE33258.1\|374168_375860_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	8.21612e-14
CP023671.1\|AYE33255.1\|368735_369719_-\|subtype-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	5.55785e-156
CP023671.1\|AYE33244.1\|346949_348626_+\|hypothetical-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	4.65653e-33
CP023671.1\|AYE33262.1\|381027_382248_-\|peptidase-T	gnl\|CDD\|235484	PRK05469, PRK05469, tripeptide aminopeptidase PepT.	0
CP023671.1\|AYE33248.1\|351798_352242_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	5.11007e-19
CP023671.1\|AYE33259.1\|375871_376606_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	7.09397e-25
CP023671.1\|AYE33260.1\|376730_377669_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.59056e-26

>CP023671.1|AYE33253.1|365456_366677_-|IS256-family-transposase
MSFSKKELIKILAKDPNIKTAEDIQNVLKDLFGGMLQQMLEAELDNHLGYEKHDYQNKNTTNSRNGKSRKTMKSNLGYFDLDVPRDREGSFEPEIVKKHQTDVSHLESSIIGMYAKGMTTRDIASQVNEIYGMDISPTLVSNITDKVIPMIREWQSRPLETVYPIVFMDAIHFKVRKDNTVVSKAAYAAIGVNIEGKKDVLGIWIGASESSKYWLLVLNELKNRGVKDILIASVDGLVGFNEAIRAVYPNTEIQRCIIHQIRNSSKYLSYKDLKAFNADLKLVYTASTEEVALAELDRLEEKWGEKYLIAVRSWRNNWNELSTFFKYPPEIRKIIYTTNAMESYNRQLRKVTKTKSIFPNDESLMKILYLATVDITKKWTQSIRGWAQILAQLSIFFEGRLDDQLF
>CP023671.1|AYE33252.1|358508_359729_-|IS256-family-transposase
MSFSKEELIKILAKDPNIKTAEDIQNVLKDLFGGMLQQMLEAELDNHLGYEKHDYQNKNTTNSRNGKSRKTMKSNLGYFDLDVPRDREGSFEPEIVKKHQTDVSHLESSIIGMYAKGMTTRDIASQVNEIYGMDISPTLVSNITDKVIPMIREWQSRPLETVYPIVFMDAIHFKVRKDNTVVSKAAYAAIGVNIEGKKDVLGIWIGASESSKYWLLVLNELKNRGVKDILIASVDGLVGFNEAIRAVYPNTEIQRCIIHQIRNSSKYLSYKDLKAFNADLKLVYTASTEEVALAELDRLEEKWGEKYLIAVRSWRNNWNELSTFFKYPPEIRKIIYTTNAMESYNRQLRKVTKTKSIFPNDESLMKILYLATVDITKKWTQSIRGWAQILAQLSIFFEGRLDDQLF
>CP023671.1|AYE33251.1|355962_356247_-|hypothetical-protein
MYSFILEVLFIMVPLAISLIIYMKIDKKYAITNIISLKLGIKREWMAFFCFCFTILIMLTINMINEYVINILPIVYFILGGIFTGMVVGVKYSK
>CP023671.1|AYE33250.1|353406_354537_+|hypothetical-protein
MFIKSCNNQNKELTLSIYNNNVALVNELRDLFKGKVINTIEYCDISKFIYENSVIIENVEVSQLNFNYKCCNNDKNKSENSSCNDCLSSFVNSIDIEVDSINSKNIRVYYLTAGVKWDSSYTLILNENKLSMQSWINISNKSGISYNHANLKCISGEVNFDSLSPIPYSKTSYANSEAVENPKLQPLDDYYIYNLSGKYILENNSTKRIKNFSAENIEYTKLYDFGYYNTNADILIKLNNTEDNNLGIPMPSGTVNIYASLNDSLQFLGSDSIKNTPINQELNLNIGKAFDITCERKIINYQKYDNYEFKEIELIINNSKDEDVPIKICYPIFAPWEITSTTDNYEKDSNGNPCFKVKVSANSKKRILFTYKTKIS
>CP023671.1|AYE33249.1|352681_353092_-|UDP-N-acetylglucosamine-pyrophosphorylase
MKYELTIYELGKLLKNIDSKYNISLLSKIKLSGGWMTMTGEISVIDVPTEAILLKGNNIITLKLKNNNENGSEIKITGLKDSKFVIDISATKYKEIKPGMLNLDVIKVNNNQCKLRIDEDMIFTIDTSVDKVIKCL
>CP023671.1|AYE33248.1|351798_352242_-|MarR-family-transcriptional-regulator
MFRLEECVGFITSTASKELSDEFNRRLLLKGSTRVQWIALYYIGNEKGISQKVLADKINVKESTIVRLIDRMEKEGIVKREKEETDRRVTNIFLTEKGENLKEELLPLGEKFSDDITKGIKQEHIDIFNSVLRKMVLNINMNVDNIT
>CP023671.1|AYE33247.1|351373_351727_-|carboxymuconolactone-decarboxylase-family-protein
MKKDPRQMLNDFMQGLNSVGETNGENVQAFMNLLGATYSEGKLTTKTKELISVAIAAYNRCEYCIVFHVYKALEAGANREEIMEAAMVAVAFGGGPSMAYSTTLLKDSIDEFEKDFK
>CP023671.1|AYE33246.1|349599_351291_-|dihydrolipoyl-dehydrogenase
MDIKLESLTGHDKSAKVGKINVSIGDMVEINTVLLQVETGKGNSPIKAKGSYKIKEIKVNEGEEVKIGDTLIKVEVLEENNSNKNNFNYFGNMIKGKDEKIETDLIVIGAGPGGYVSAIYAAKRGLKVVSIEKENLGGTCLNVGCIPTKALVKSSEVYYNLVNCNEFGLECENPKVNMGKIIDRKDKIKNTLVSGIDYLLNKNEVKQIKGEASFKDKRTIEVKSGRDKYSITGKNIIIATGSKISKINIKGIEEPFVLNSTTALSSKEKPKSITIIGGGVIGMEFAFMYSNLGVKVNVVEFADRLLTMVDSEISEEIKNIAEKKGITIFNSSKVSRIEKTENGEALVIFNKGEEEKYIVSEKVLVAIGREPNIEGLEIENANIKLNENLRGIEVSETLETNIDGIYAIGDVNNIMQLAHIASHQGIVAVDNILGENKTVDYSAVPNVIFTYPEIASVGLTEDQAKNNDIKYKTSKFYFQGNGKALTMGENEGFIKLVKDIEKDKIIGASIIGPDASSLVSTLTLIIKNNIKEDGIIETIFAHPTTGEVIHEAALELGIGGLHC
>CP023671.1|AYE33245.1|348670_349606_-|lipoate--protein-ligase
MLKNIIVISKSTDPYCNLAMEEYIFNNIKKNEVIFYLWQNHKTVVIGRNQNPYIECDVDYIEGNGAKIARRMSGGGTVYHDLGNLNFTFVTSKENHNIEKQILVIRKAIEKFGLSVDKSGRNDLTINNKKFSGHAFYEDDNKMFHHGTIMIDVDKLELNNILKPSKIKLKSKGIDSVKSRVINLKECNNDITLNDVFKNLIESFKEVYGEVYSIRETIGKEVKGNLLEKYKNHKWVYGESPEFNVNLETPTDIGNIQILMDIKDNVVKKVRVYSDSLNQISFSDLEQLIVKQEFNRENILKTVYYFLESFK
>CP023671.1|AYE33244.1|346949_348626_+|hypothetical-protein
MKKLFSILTIIFIFAFPNVVSATTKEYYIDNVNIQAEILQNGDVNVTENLGYDFNGDFNGIFRNLKLNNTLGYKISEVYSIDENGHKQLISEADNEADYTYKLIDNGDSIQIKVFCPSSNEKKSFFFNYTIEKAAKKYSDLSQLYWNFYTVENVSSIKEGSLNLSLNNSNFDSSVFHYDVFGDGDFETTYNDKSVSVNFKNLTSLLGIKLNFQKEFLNDIPEINSTAPTEVESQYQSSTDLNGKCIAFIALFISLGLGGIGFGFFINKLKFKKELEKYRSKFTFIPNEIYVEPPSSTSPALIDLLMNEKVVSKEILTPTLFYLVKKGYYTISESTYYSGKNKSNNLKEDLIFTRVHSKGLPKENHLVFLIDWFSMYEVNGSFSLQKIKKRIQSQSEAQKFINKLNEWIAEVFEDADSYTFFKTIGNKRILRNKYYNEKLKWLSYKNYLINSKENLEHKNLTNIDDPLIYATALDIDYDDIKVILNSLSKDIKRNSSEIPEFSYLYCNNYLFYSLLVNDINGDAHINIDNSPNSTSSSFGGFSSGSGFTGGGGGGSGAF
>CP023671.1|AYE33254.1|368470_368734_-|CRISPR-associated-endonuclease-Cas2
MFVIITYDVNEKRVNRVRKILKKYVTWTQNSVFEGEITEGKLTKCLAEVKKNLVSAEDSLYIYRVSYSKNITKDVVGVEKNLDELFI
>CP023671.1|AYE33255.1|368735_369719_-|subtype-I-B-CRISPR-associated-endonuclease-Cas1
MGKDYYVFSPGRIKRKDNTIYFINTDEEKRGIPIESIERIHFFSEVDLNSKFINYISQYKIILNFYNYYGFYSGSYYPRKKNVSGFLLVEQAVAYKDLESRLFLAKAFIDSAIHHILRNMRRYDKVPNEYFEKIAEEKERMLKANSIPEIMGAEGRIRKIYYESYQYILKNDFGFTNRNRRPPKDPLNALISFGNSVMYTAILGEVYQTQLDPTISYLHEPSTKRFSLILDISEIFKPLIIDTIIFSLINNRRLNNKDFTNEEGVCFLNDEGKKKFLTEFEKKMATSIKHRKLKRSVSYRQLIKLEGYKIIKHLINDEKYKPLKAWW
>CP023671.1|AYE33256.1|372549_373284_-|type-I-B-CRISPR-associated-protein-Cas5
MKRAVRLEIYQNLVNYKKPTSFQLKETYPLPPPSTVIGMVHFACDYKSYIPMNIGIQGEYNSKINDLYTRYEFAGASYEADRHNVKIDSKEQGKSYGMMRGISTAELLVDCNLVLYIQPEDDSKVEEIFEAFKNPREYISLGRREDLVQINKVEIVELKEVELEENMPLEMDSYIPVSLKNDIKSNATLYTLNKDYTLRTIKKGVETRSWNKIKVIHAVKGSTVIDEYTSLNKDLVNNSVVFLL
>CP023671.1|AYE33257.1|373293_374169_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MEKKGLTASFIFEAESANYGEGVGNVTALKKISRGDGEAYSYISRQAIRYNIINQMGEDNTPLGLDGEVLQFHTDATIKDYPEIDFFGYMKTIKPIRTRSAVVRLSNAVALESFNADTEFLTNKGLLDRYNKDLKDKKNGGNIAQSEIHKSYYSYTITIDLDKVGIDENDNIEISNEEKAKRVNKLLDTILFLYRDIRGRRENLSPIFAIGGVYSIKNPFFENRLKIKNNSLRIETINSILDLNEDINNNTNIGLLKGIFNNDESIENALKPIEIGEFFKELKSKVTEYYK
>CP023671.1|AYE33258.1|374168_375860_-|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MAKVRIELSDWMKNAGIVGFVKIINHRLNGSSQIDLKSNYIEFDTEILENFEEVYFEYLIYKYKEFISIEKIVSKYDYINLLLSKEVDEKDLAILNSHIKYTKERLKSASYKSAYEIINDSSYNLLEKEKQLKEIKIKKKQSISDVSEDIKLQCNLLKEIIEYLNEENVRKIIAAKNVIYDVIQGFWSDVSFLNKNNNKKNMYECYINDFINPVINYESSNLEKAKYTCFTCDNKIQKLSKPFAYDITWITKMGVDGSRKSSHYWNFQSDSNICPICNLIYSCIPAGFSVLNGKGLFINNNKSISKIISANNLILYSGKKIDELEQESYFNIIDSMEDKSVNEVNSEIENIQIVKFDKSNNSRPYTFNVLSKNKLEIISKNKKQLSALIGKSVKIAKDYYINIYSEVILRIYNGKNLFDLIALLTRLRISGEYKNSKIIYILISLNNNLMEGKYKVWYKDIDKFRDYGIKLRQIYGRNDENKIPGIAYRLQNALKVKNESRFMDTLLNAYTSRKQPIPIDFIEALKDVNKFQTIGYAFLIGLQGGLENRNQENNGNNIEEDNK
>CP023671.1|AYE33259.1|375871_376606_-|CRISPR-associated-endoribonuclease-Cas6
MRILVEIITEKIPLNNNRYLTLSLIKNVLEKQSPELFKAMYEDDENYNYRTKPFTYSLKLNDFKIVGDEFELKGNSTISISTPDPVLGSILYNGFLLTKEYEYNKKYKLSIGRVTLLKEKKVISNEVLFKTLSPLVIKNRRGEFLKIDNENYEKELNYIANKVLESYRGFGLKESLIFQPILMKKRVAKEKIEKFTKETNKDIFYITGYEGVFKLTGNKEDLNLIYNLGLGVRRSSGFGMLQIV
>CP023671.1|AYE33260.1|376730_377669_-|WYL-domain-containing-protein
MSSLGNLLKMLYILKRGQKVKVKDLAEELEVDHRQIRRYKEELSEYFDIQSITGPNGGYILCDEYFPFKDILTEKEINNLKRAIDTVSYSEEYELGKAIDKINFTILNSQSESLISEQIIPYSRPKMEIEKINKMYNEINLSILSCKEIIIVYVDNKGSLTRRAIQPHKFLRFKGEYYIIATCKLRNEIRYFKLVRIKEYILTEKRFEKMKNIDELINEYKENSIGIFGGNEIEVELEINPPMANTIKERIWVDNQEVIELEDGKILFKAIMKLGPELISWVLSMGDSVKINSSEELKRQVRIKVENIFKNL
>CP023671.1|AYE33261.1|378080_380666_-|hypothetical-protein
MRVEESKNLNIKLSVLITLFMIFSLFSNLSTPIQAETTRKEYVTTVNDHTIGDELFQFKFSSGWIESTGVNSFYNGDEYWTNATKSFQPSYRLKFYGNKVELYGVKEQTSAICEVSIDGGDIEEVDPYNPTRVTGQKIYEKSGLTDDEHILELKITYRKNQASKNYNGEIDFAKVYHKEIPATGVEMNKESIQIEVGMTDSIKAKVLPSYSTEKNIVYLVEDESIATITEDGEITGIKEGKTNIIATIEGTEIVGKTHLTIIKAGLPLGASIGSTDFHYLQKNYDDIKSLNKTTWNDIAWIGDELNSKIVTWTKDSNVNNVIISSSNFANENGDVIGSINVEISWLKETLANIGRGNPSAPVELFPDIIHNKGDLDIEANKVASAWVNITIPRDAKPGIYNGTITVSAEGLDTPYVFNYSFEVVNLVQPLPKETKTQMEIWQHPYAVARYYGVQKEELFTENHFKYLRPSLEEYRDMGGRGVIAHIVEEAWNHQSYDSDPSMVKWTKSLDGTFKFDYIDFDRWIQFNIDLGIINPKDGFGQIKCYSIVPWNNRIEYYNELTGEKESINPTPGTAEWRVPWTEFLSNFMNHLEEKGWFNITYISMDERSMKDLIASVDLIENIRNSNGESFKISSAMNYQSGNDYSFLDKIDDISIGLSHINHNSEDMKNMAKHRQEAGLLTTIYTCTGDYPNSFTISDSSESAWTMWYSLSQNTDGFMRWSWDGWVEDPLENVSYKYWEPGDPWLIYPAEKNSETKTFYSTPRYERLKEGIRDINKAKYLMENSKELKGEIEALVKSLKRANKGNNGYGSAVAATEKDRELTNNEVKRMRNGINDFAKQYIESKGVSVESVASKHMGNMLY
>CP023671.1|AYE33262.1|381027_382248_-|peptidase-T
MKKVEERFLEYIKIDTKSDETTGLTPSTKGQLKLAEILAEELKKIGVNKVEISENGYVYAVLEKNCDKNIPTIGFIAHMDTAPDYCGLNVNPQIVQNYDGGDIKLNDEVILSPKFSPELRDYIGKTLITTDGTTLLGADDKAGIAEIMTAIEYLVNHPEIKHGDIKIGFTPDEEIGEGADHFNVEMFKADFAYTIDGGAIGELEFENFNAAGVKVEIKGVNVHPGYAKNKMINSIMVAHEFINKLPLNEVPEKTEKYEGFSHLTDIKGSIEKTTLDFIIRDFFADTFEERKEKFKEIEKELNEVYGEGVVTVKVKEQYRNMKEKIEPIMHIVETAKKAMEDANVTPKVKPIRGGTDGARLSYMGLPTPNLFAGGENFHGKYEYIPIESMEKAVEVILNIVRIYSEK
>CP023671.1|AYE33263.1|382342_383407_-|polysaccharide-deacetylase
MNNVERKAYNGRYKNQRKKCKVKNSNINKLKKKRYRRRVRNKIIFKFIMISLFVTILIVIKNNISNYKAEKSKENAKNEIVTTIVDDKSNDNKDTEPKKQERYEKQEEIKKSDPHEIMPNSNVTYEGVTYAMDASDVKAMLYGTYAGSKKYVFLTFDDGPSPNTEKVLDILKENNVKGTFFVLGSMIEASTEAQKTLKRIIKEGNALANHTYTHNLSTLYPRNTIDINYFMEEVNNTNKLMKKILGENFNTKVLRMPGGYMSRKYYNDPSLPAFDDKLNSEGIVSIDWNTLNGDAEGVEYTVEEMVNKVKEGAKEVNQSIVLMHDTYGKEKTVEALPEIINYFKSQGYEFRTIK

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Crispr_ID: CP023671_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023671_4

1521392-1521492

Orphan

Consensus_repeat	Method
AAGCGACTCGTTTATCTTATCACTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023671_4

>merge|CP023671|4|1521392-1521492|CRISPRCasFinder
AAGCGACTCGTTTATCTTATCACTCTTAAAAATTCTTGTCAACAACTTTTTTAAAGTCATTTTTCAAATCTACTAAAAGCGACTCGTTTATCTTATCATCA

>CP023671|4|4|1521392-1521492|CRISPRCasFinder
AAGCGACTCGTTTATCTTATCACTC	TTAAAAATTCTTGTCAACAACTTTTTTAAAGTCATTTTTCAAATCTACTAA
AAGCGACTCGTTTATCTTATCATCA

Protein	Signature genes	Signature genes Name	Protein_function
CP023671.1\|AYE34170.1\|1511275_1512022_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|234605
CP023671.1\|AYE34176.1\|1521810_1522488_+\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
CP023671.1\|AYE34167.1\|1507538_1508888_+\|iron-hydrogenase	unknown	unknown	gnl\|CDD\|274983
CP023671.1\|AYE34175.1\|1514783_1516013_-\|IS91-family-transposase	unknown	unknown	gnl\|CDD\|377437
CP023671.1\|AYE34177.1\|1522583_1522793_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223014
CP023671.1\|AYE34168.1\|1509019_1509661_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
CP023671.1\|AYE34184.1\|1529684_1530050_-\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
CP023671.1\|AYE34182.1\|1525872_1526109_-\|hypothetical-protein	unknown	unknown	unknown
CP023671.1\|AYE34172.1\|1512934_1513126_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|334828
CP023671.1\|AYE34180.1\|1524135_1525071_-\|CPBP-family-intramembrane-metalloprotease-domain-containing-protein	unknown	unknown	gnl\|CDD\|376806
CP023671.1\|AYE35836.1\|1526201_1528277_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|237186
CP023671.1\|AYE34183.1\|1528428_1529364_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133030
CP023671.1\|AYE34171.1\|1512189_1512648_+\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|224146
CP023671.1\|AYE34166.1\|1506568_1506874_-\|hypothetical-protein	unknown	unknown	unknown
CP023671.1\|AYE34179.1\|1523627_1524056_+\|hypothetical-protein	unknown	unknown	unknown
CP023671.1\|AYE34173.1\|1513140_1514370_-\|IS91-family-transposase	unknown	unknown	gnl\|CDD\|377437
CP023671.1\|AYE34174.1\|1514577_1514769_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|334828
CP023671.1\|AYE34169.1\|1509870_1511109_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
CP023671.1\|AYE34181.1\|1525260_1525749_-\|damage-inducible-protein-CinA	unknown	unknown	gnl\|CDD\|234789
CP023671.1\|AYE34178.1\|1523284_1523494_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP023671.1\|AYE34170.1\|1511275_1512022_-\|peptidylprolyl-isomerase	gnl\|CDD\|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	3.67637e-34
CP023671.1\|AYE34176.1\|1521810_1522488_+\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	5.05761e-145
CP023671.1\|AYE34167.1\|1507538_1508888_+\|iron-hydrogenase	gnl\|CDD\|274983	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3. See for descriptions of different groups.	3.02296e-112
CP023671.1\|AYE34175.1\|1514783_1516013_-\|IS91-family-transposase	gnl\|CDD\|377437	pfam04986, Y2_Tnp, Putative transposase. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801. This is a rolling-circle transposase.	1.4735e-46
CP023671.1\|AYE34177.1\|1522583_1522793_-\|hypothetical-protein	gnl\|CDD\|223014	PHA03231, PHA03231, glycoprotein BALF4; Provisional.	0.00361174
CP023671.1\|AYE34168.1\|1509019_1509661_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	8.93455e-45
CP023671.1\|AYE34172.1\|1512934_1513126_-\|hypothetical-protein	gnl\|CDD\|334828	pfam02146, SIR2, Sir2 family. This region is characteristic of Silent information regulator 2 (Sir2) proteins, or sirtuins. These are protein deacetylases that depend on nicotine adenine dinucleotide (NAD). They are found in many subcellular locations, including the nucleus, cytoplasm and mitochondria. Eukaryotic forms play in important role in the regulation of transcriptional repression. Moreover, they are involved in microtubule organisation and DNA damage repair processes.i.	0.00936741
CP023671.1\|AYE34180.1\|1524135_1525071_-\|CPBP-family-intramembrane-metalloprotease-domain-containing-protein	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	8.61774e-10
CP023671.1\|AYE34183.1\|1528428_1529364_-\|glycosyltransferase	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	3.13843e-96
CP023671.1\|AYE34171.1\|1512189_1512648_+\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	2.19762e-82
CP023671.1\|AYE35836.1\|1526201_1528277_-\|elongation-factor-G	gnl\|CDD\|237186	PRK12740, PRK12740, elongation factor G-like protein EF-G2.	0
CP023671.1\|AYE34173.1\|1513140_1514370_-\|IS91-family-transposase	gnl\|CDD\|377437	pfam04986, Y2_Tnp, Putative transposase. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801. This is a rolling-circle transposase.	1.4735e-46
CP023671.1\|AYE34174.1\|1514577_1514769_-\|hypothetical-protein	gnl\|CDD\|334828	pfam02146, SIR2, Sir2 family. This region is characteristic of Silent information regulator 2 (Sir2) proteins, or sirtuins. These are protein deacetylases that depend on nicotine adenine dinucleotide (NAD). They are found in many subcellular locations, including the nucleus, cytoplasm and mitochondria. Eukaryotic forms play in important role in the regulation of transcriptional repression. Moreover, they are involved in microtubule organisation and DNA damage repair processes.i.	0.00936741
CP023671.1\|AYE34169.1\|1509870_1511109_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	8.44531e-126
CP023671.1\|AYE34181.1\|1525260_1525749_-\|damage-inducible-protein-CinA	gnl\|CDD\|234789	PRK00549, PRK00549, competence damage-inducible protein A; Provisional.	4.08257e-81
CP023671.1\|AYE34184.1\|1529684_1530050_-\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	1.5592e-23

>CP023671.1|AYE34175.1|1514783_1516013_-|IS91-family-transposase
MKKGKIKRILEDHWKEFEKLYKNKIRPNVKKEVEKVLKCKDTKYGFIELKCNNCNTTKRIGFTCKSRFCTSCGKIYTDNWIDNMLGNLINVRHRHIVFTIPKELREFFGLDRQRLKILPKCAARAVTSWMHSLNRKEEFTPGIVTVIHTFGRDLKWNPHVHMMVTEGGRGNITEWRHIRHISYESLRKRWQKVLLDEITYINGNTKEIKLLKNKLYKEKDKGFYVHAKTEIKSAKTAAKYVGRYVGRPAIAESRILKYDGENVTYKYTRHEDNKVIVETVHVYEFIKRIIRHIPEKNFKMIRYFGIYSRRSKGKFNFIKMIDEKILSIRRSIATWENRILAISGVNPCKCPNCGNKMRFHDIVYPKYGSMRERLRIKIIEENEEKLEKAIENYAITKRILSGKIIPKTT
>CP023671.1|AYE34174.1|1514577_1514769_-|hypothetical-protein
MKTEEILYICTICGAKENIPKEVVEYFDEMDQSNVDEPPCFSCEKCGGVMRPKEYTGVYGIKY
>CP023671.1|AYE34173.1|1513140_1514370_-|IS91-family-transposase
MKKGKIKRILEDHWKEFEKLYKNKIRPNVKKEVEKVLKCKDTKYGFIELKCNNCNTTKRIGFTCKSRFCTSCGKIYTDNWIDNMLGNLINVRHRHIVFTIPKELREFFGLDRQRLKILPKCAARAVTSWMHSLNRKEEFTPGIVTVIHTFGRDLKWNPHVHMMVTEGGRGNITEWRHIRHISYESLRKRWQKVLLDEITYINGNTKEIKLLKNKLYKEKDKGFYVHAKTEIKSAKTAAKYVGRYVGRPAIAESRILKYDGENVTYKYTRHEDNKVIVETVHVYEFIKRIIRHIPEKNFKMIRYFGIYSRRSKGKFNFIKMIDEKILSIRRSIATWENRILAISGVNPCKCPNCGNKMRFHDIVYPKYGSMRERLRIKIIEENEEKLEKAIENYAITKRILSGKIIPKTT
>CP023671.1|AYE34172.1|1512934_1513126_-|hypothetical-protein
MKTEEILYICTICGAKENIPKEVVEYFDEMDQSNVDEPPCFSCEKCGGVMRPKEYTGVYGIKY
>CP023671.1|AYE34171.1|1512189_1512648_+|thioredoxin-dependent-thiol-peroxidase
MIELGKLAPDFTLIGSDGNEHSLSDYRGKKVILYFYPKDNTPGCSTEACDFRDNNNEINNLNAIVIGISKDSLSSHNKFIEKFHLPFILLSDEEKAVCALYDVIKEKNMYGKKVLGIERSTFIINEEGILIKEFRKVKVKGHVEAVIEELRL
>CP023671.1|AYE34170.1|1511275_1512022_-|peptidylprolyl-isomerase
MQDKILATVAGKEVKMSDLQSLVMRYPEDKRAYFQTEEAMKQLLEQVIAFELMANLGEELNLNTTEEFKANLKNVERELLTQVTMNKVLSEITVTDKEALDFYNENKNMFVEQPTVSAKHILVDSKETCENVRKEIESGEVTFEEAASKYSSCPSKEQGGSLGAFGRGMMVPEFEDAAFKLEIGVVSEPVQTQFGYHLIKVEDRSEEKTVDFENVKSQIVNKLIQERQQRKYLDVVKELEAKYGVTRN
>CP023671.1|AYE34169.1|1509870_1511109_-|IS256-family-transposase
MTRKIDTNFDYNEEIKRCKTIDDVMGKNGLIQRLVKDVLENILEGEMEEHLGRNKYERVEVVDQTKKNYRNGYSRKNLRSSFGDVDLDVPRDRNAEFEPQIIKKYETVCTELYKKIISLYAKGMSTSDIQAEIEDLYGITISPSMVSKITDKVLASAAEWQNRALDKIYPIVYLDAMYFKVRSNGKIVNKAVYICLGYTMEGYKDILGIWVDEAEGAKFWLGICNDLKNRGVKEILIACMDGLKGLPQAIKTVFPSVNIQTCIVHQIRNSIKYIASKDKKAFMKDLKEVYKATTEELALAQLDNLKERWGDKYGIVIDSWYNNWSNLSTFFDFSPTIRKMIYTTNILEGFNRQIRKFTKVRVIFPTDESLNKCVYLATMEILEKWTQPIHNWGATLAELSIIFEDQLKDELA
>CP023671.1|AYE34168.1|1509019_1509661_+|HAD-family-phosphatase
MQNIKAAIFDLDGTLVDSMWVWEQIDIDYLSAIGHKVPNNLKDEITHLSFNETALYFKNRFKLENSVEEIINSWNTMALDYYSNKIKLKKGVSEYLNKLKDNNIKIALATSNSTPLLEATLRNNGIYHYFDAITTTDEVKRNKAYPDVYLLSANKLNISPKDCVVFEDIVQAINGAKLAGMKVIAVYDKSSENQKEELMKLSDKYINDYTELI
>CP023671.1|AYE34167.1|1507538_1508888_+|iron-hydrogenase
MNKEYTDWFNELVKSYYDGNFDETIKKILSNSNKSPEETFSVISSLCGCNIKYDENYIYNLKKAITNYNVHQKIVEKLQNCFGKCSENIDEIPKCQLACPFDAIIDNKENNTKVIDNERCIDCGLCIDACDNGNFIDKVEFLPIMELIKNNTKVIAAVAPAISGQWGPNTTMDQMRAALINLGFTDMIEVAFAADMLTIKEAVEFNKHVKSSSDLMITSCCCPMWVGILKKVYKSLVKDLSPSVSPMVAAGRVIKKLNKDAKVVFIGPCIAKKAEAKEKDLSDAIDFVLTFQELKEIFNALDICPSSLQGVPSIEYASRGGRLYARTGGVSIAISEAVEELYPEKHKLFKAVQAEGVKNCKEVLAKAQEGSLDANFIEGMGCIGGCVGGPKILVSKEDGKKAVDDFAYNSSIKIATHSNILDNILNDLNITSLDDFKSPEKIHILERDF
>CP023671.1|AYE34166.1|1506568_1506874_-|hypothetical-protein
MRGSTIVMIMASIGFILIGLVILSSKKIKSLMSDVKIYTDTKKFISFNGMFNIGIGVIGLLLGSLDYFYAELSKYIVIVFIIIMVTASLIQNKLSKKYKKF
>CP023671.1|AYE34176.1|1521810_1522488_+|uracil-DNA-glycosylase
MKKILDNDWQELLESEFQKEYYQDLRKFLIYEYKTKTIYPNMYDIFNALKFTSYKDVKVVIIGQDPYHGPNQAHGLSFSVNKGIKTPPSLLNIYKELNSDLGCYIPNNGYLKKWADQGILLINTVLTVRAHEANSHKNMGWEIFTDKIISLLNGKDDPIVFILWGNPAIKKSLLITNKNHFILKSPHPSPLSASRGFFGSRPFSKTNEILKFIGKSPIDWQIENI
>CP023671.1|AYE34177.1|1522583_1522793_-|hypothetical-protein
MLEKLSLSDEEYDYLAKCIAIGVGIGTFVGSLIGNVILGFAAGGVIGIVVSGIRFLSHKLKGMHRKEII
>CP023671.1|AYE34178.1|1523284_1523494_-|hypothetical-protein
MIDLFSLSSDQLIVVAAFIAADIAQSLTSEEQEIVAWLFEAIGQNLSVFGAVEALRQKNNKNDDSGIVK
>CP023671.1|AYE34179.1|1523627_1524056_+|hypothetical-protein
MKYLLFIALISGLVGTYFYYDHKLALTRKQLMIASKRNNKLKSRATPKKNLDIKINFSNPTSKIGLTNINTNLYLAPINSSPIIRTIKIRMEVQILDAAETNSQTWYYVNLPIDSNINCRGWLNSTDFSILYSDSTNITKTT
>CP023671.1|AYE34180.1|1524135_1525071_-|CPBP-family-intramembrane-metalloprotease-domain-containing-protein
MKKVFRANLYFLIIILLEIFMPKILVPIYKEIGVTDIRIALAMNHILLFLVPATVYIILTKSSVKNTLKLNKLYFKDILLIILLAFLCQPIMSFFSIITAFFFNNEIGAFITQINSTPYLILLSLVALLPAITEECTIRGVVLSGYENKNMYLAAMVTGLFFGIFHLDPQQFLYTTVLGFILALVVRITNSIFASAIIHFIINGTSVTASKLLNSIPQSTTILEGNMDLSLRALPINEKMIMFVVYGVIALIFATFVYMIIKKLEELNIRRGVLTEERKEIIKDKDSIINIPFILIIVVYIAFMFYKYINI
>CP023671.1|AYE34181.1|1525260_1525749_-|damage-inducible-protein-CinA
MSNNGNDRSIEYIVGKILCKNKLTISTAESCTGGLVAGKLISYPGISEVFKEGVVTYSNESKMKRLGVKEETLRSFGAVSEETAREMAEGIAREAKTDVSVVTTGIAGPGGGTKEKPVGLVYIGVYVKGKTQVKKFNFKGDRQQVREEAVLSALNMLKHNLE
>CP023671.1|AYE34182.1|1525872_1526109_-|hypothetical-protein
MPDYKMDIQGNLNLSEYSNIFDYMGVVDMNDSFTITLSNTSQQDINIITSMLRDGDFLIKEQGVNGNGEYYINANKLK
>CP023671.1|AYE35836.1|1526201_1528277_-|elongation-factor-G
MKDYTINNLRNVGLIGHSGSGKTSLAEALLFHSGNSDRLGKVEDGNTIMDFDQEERRRRISLSVSLASIEFKNTKINLVDIPGYFDFYGEVIQGMRAVDVATIVVCGASGVQVGTEKAWDYCDKIKLPRTFFVNKLDRENSSFDKVLGELKEKFGISVVPIQYPIGKEDDFKGVINIISKRARIYNEKTHKVEITDIPKDLLDKVEECKQMIMEAVAETDEELLEKYFSEGELSDEEIYKGLIKGCADGDIAPVMCGSATKVIGIDSVLDDIVECFPSPEYAIPQKAINLQSDEEVFISLSEDNPFSALVFKTIADPFVGKISIFRVITGKLSNEVSVINSNNDKVEKLSNVFFLKGKNQVQTNKVMAGDIAAVAKLQYTGTGDTLCDSNNKIIYDKMNFPKPIISMSVMPKSKGDEDKISYSLQKLLEEDPSFTMHRDTENAETIISGLGETHLEVIASKLKNKFGADVILDTPKIPYRETIKGFSEVQGKHKKQSGGHGQYGDVKIRFERRDDGGEELEFIDKVVGGAVPRNFIPAVEKGLKDCIEKGILAGYPVIGLRATLYDGSYHPVDSSEMAFKMATSIAYKKGLEIAKPILLEPIMHVEILVPDEYMGDVIGDINKKRGRVIGMELEGKLQKIIGEIPLAEMSKYATDLRSMTQARGTFTSILQRYDEVPEIESKRIIEEVKKM
>CP023671.1|AYE34183.1|1528428_1529364_-|glycosyltransferase
MSKMISIVVPMYFEEKVVEECYRRLTEVMSNIKYEHELVFVNDGSTDGTLPMLKDIASKDSSVKIIDFARNFGHQIAVTAGIKEAKGDAVIVIDADLQDPPELILEMVDKWENGYEVVYAKRKKRKGETFFKLMTAKYFYKFLQIMSDVDIPRDTGDYRLMDRKVVDVFNSMTEKNRFVRGMVSWLGFNQTYVEFVRAERFAGETKYPLKKMLKLAEDGIVSFSHKPMKIIGGFGVIFLVIFFLQILIAIYNSIFRFGVSDIFCLATYVSLVAGILLISLGVLGSYIARIFDESNGRPLYIIREKVNFDDK
>CP023671.1|AYE34184.1|1529684_1530050_-|GtrA-family-protein
MEKFLKFGLVGVINTLITMIVFNGLKFIGVNILVANTIGYICGMINSYLWNNRWVFKSNTKDVSTISKFIIVNVVAMLINNGILFVFVNGVGINSTISQALAIVITTVINFVGNKIWTFNK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP023671_2	2.80\|364951\|37\|CP023671\|CRISPRCasFinder,CRT,PILER-CR	364951-364987	37	MH248069	Clostridium phage CPS2, complete genome	14017-14053	5	0.865
CP023671_2	2.80\|364951\|37\|CP023671\|CRISPRCasFinder,CRT,PILER-CR	364951-364987	37	NC_018084	Clostridium phage phiZP2, complete genome	4784-4820	6	0.838
CP023671_2	2.80\|364951\|37\|CP023671\|CRISPRCasFinder,CRT,PILER-CR	364951-364987	37	JQ729991	Clostridium phage phiCPV4, complete genome	4395-4431	6	0.838
CP023671_2	2.11\|360470\|37\|CP023671\|CRISPRCasFinder,CRT	360470-360506	37	NC_015417	Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence	95589-95625	7	0.811
CP023671_2	2.10\|360407\|35\|CP023671\|CRISPRCasFinder,CRT	360407-360441	35	GU943056	Uncultured phage MedDCM-OCT-S04-C348 genomic sequence	27714-27748	8	0.771
CP023671_2	2.73\|364495\|35\|CP023671\|CRISPRCasFinder,CRT,PILER-CR	364495-364529	35	MN694483	Marine virus AFVG_250M1031, complete genome	26636-26670	8	0.771
CP023671_2	2.75\|364624\|37\|CP023671\|CRISPRCasFinder,CRT,PILER-CR	364624-364660	37	NZ_AP017970	Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-2, complete sequence	10522-10558	8	0.784
CP023671_2	2.75\|364624\|37\|CP023671\|CRISPRCasFinder,CRT,PILER-CR	364624-364660	37	NZ_CP038614	Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence	91582-91618	8	0.784
CP023671_2	2.11\|360470\|37\|CP023671\|CRISPRCasFinder,CRT	360470-360506	37	MH051335	Escherichia phage vB_EcoM-Ro157lw, complete genome	68640-68676	9	0.757
CP023671_2	2.11\|360470\|37\|CP023671\|CRISPRCasFinder,CRT	360470-360506	37	JX128258	Escherichia phage ECML-117, complete genome	5023-5059	9	0.757
CP023671_2	2.11\|360470\|37\|CP023671\|CRISPRCasFinder,CRT	360470-360506	37	NC_048194	Escherichia phage vB_EcoM_WFH, complete genome	67576-67612	9	0.757
CP023671_2	2.11\|360470\|37\|CP023671\|CRISPRCasFinder,CRT	360470-360506	37	NC_048073	Escherichia phage FEC19, complete genome	2251-2287	9	0.757
CP023671_2	2.18\|360923\|36\|CP023671\|CRISPRCasFinder,CRT,PILER-CR	360923-360958	36	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	575675-575710	9	0.75
CP023671_2	2.19\|360987\|35\|CP023671\|CRISPRCasFinder,CRT,PILER-CR	360987-361021	35	MT178275	Klebsiella virus KpS8, complete genome	124394-124428	9	0.743
CP023671_2	2.32\|361833\|36\|CP023671\|CRISPRCasFinder,CRT,PILER-CR	361833-361868	36	LR026976	Bacillus pumilus isolate 1 genome assembly, plasmid: p576	34083-34118	10	0.722
CP023671_1	1.2\|356620\|37\|CP023671\|PILER-CR,CRISPRCasFinder,CRT	356620-356656	37	MK554696	Fusobacterium phage Fnu1, complete genome	115340-115376	12	0.676
CP023671_2	2.11\|360470\|37\|CP023671\|CRISPRCasFinder,CRT	360470-360506	37	MH051335	Escherichia phage vB_EcoM-Ro157lw, complete genome	1-30	13	0.649
CP023671_2	2.11\|360470\|37\|CP023671\|CRISPRCasFinder,CRT	360470-360506	37	NC_048194	Escherichia phage vB_EcoM_WFH, complete genome	1-30	13	0.649

1. spacer 2.80|364951|37|CP023671|CRISPRCasFinder,CRT,PILER-CR matches to MH248069 (Clostridium phage CPS2, complete genome) position: , mismatch: 5, identity: 0.865

ggaggctacaattatggaacgctataatatatgcggt	CRISPR spacer
gtcgtttacaattatggaacgctataatatatgccgt	Protospacer
*  * .**************************** **

2. spacer 2.80|364951|37|CP023671|CRISPRCasFinder,CRT,PILER-CR matches to NC_018084 (Clostridium phage phiZP2, complete genome) position: , mismatch: 6, identity: 0.838

ggaggctacaattatggaacgctataatatatgcggt	CRISPR spacer
gtcgtttacaattatggaacgctataatatacgccgt	Protospacer
*  * .*************************.** **

3. spacer 2.80|364951|37|CP023671|CRISPRCasFinder,CRT,PILER-CR matches to JQ729991 (Clostridium phage phiCPV4, complete genome) position: , mismatch: 6, identity: 0.838

ggaggctacaattatggaacgctataatatatgcggt	CRISPR spacer
gacgtttacaattatggaacgcaataatatatgccgt	Protospacer
*. * .**************** *********** **

4. spacer 2.11|360470|37|CP023671|CRISPRCasFinder,CRT matches to NC_015417 (Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence) position: , mismatch: 7, identity: 0.811

tttaattattttgaattattttaaattatttttaaaa	CRISPR spacer
aatgcttattttgaattattttaatttatttttatta	Protospacer
  *. ******************* *********  *

5. spacer 2.10|360407|35|CP023671|CRISPRCasFinder,CRT matches to GU943056 (Uncultured phage MedDCM-OCT-S04-C348 genomic sequence) position: , mismatch: 8, identity: 0.771

cttaaaagagataagagggaatatttttgtatgat-	CRISPR spacer
atctttagagatacgagagaatatttttgta-gatg	Protospacer
 *.   ******* ***.************* ***

6. spacer 2.73|364495|35|CP023671|CRISPRCasFinder,CRT,PILER-CR matches to MN694483 (Marine virus AFVG_250M1031, complete genome) position: , mismatch: 8, identity: 0.771

gcaattgctgtaatcattatccatttcattttgtt	CRISPR spacer
actaatagtgtactcattatccatttccttttggt	Protospacer
.* * *. **** ************** ***** *

7. spacer 2.75|364624|37|CP023671|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017970 (Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-2, complete sequence) position: , mismatch: 8, identity: 0.784

ttaaaaaaatattaaaaaacctaactataataataga	CRISPR spacer
aaaaaaatatattaaaaaaccaaactataaataaaaa	Protospacer
  ***** ************* ********  * *.*

8. spacer 2.75|364624|37|CP023671|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 8, identity: 0.784

ttaaaaaaatattaaaaaacctaact--ataataataga	CRISPR spacer
ttaattaaatattaaaaaacctaacttattgatttta--	Protospacer
****  ********************   *.**  **

9. spacer 2.11|360470|37|CP023671|CRISPRCasFinder,CRT matches to MH051335 (Escherichia phage vB_EcoM-Ro157lw, complete genome) position: , mismatch: 9, identity: 0.757

tttaatt--attttgaattattttaaattatttttaaaa	CRISPR spacer
--taactccattttgaattaatttaaattaattttttct	Protospacer
  ***.*  *********** ********* ****

10. spacer 2.11|360470|37|CP023671|CRISPRCasFinder,CRT matches to JX128258 (Escherichia phage ECML-117, complete genome) position: , mismatch: 9, identity: 0.757

tttaatt--attttgaattattttaaattatttttaaaa	CRISPR spacer
--taactccattttgaattaatttaaattaatttttttc	Protospacer
  ***.*  *********** ********* ****

11. spacer 2.11|360470|37|CP023671|CRISPRCasFinder,CRT matches to NC_048194 (Escherichia phage vB_EcoM_WFH, complete genome) position: , mismatch: 9, identity: 0.757

tttaatt--attttgaattattttaaattatttttaaaa	CRISPR spacer
--taactccattttgaattaatttaaattaatttttttc	Protospacer
  ***.*  *********** ********* ****

12. spacer 2.11|360470|37|CP023671|CRISPRCasFinder,CRT matches to NC_048073 (Escherichia phage FEC19, complete genome) position: , mismatch: 9, identity: 0.757

tttaatt--attttgaattattttaaattatttttaaaa	CRISPR spacer
--taactccattttgaattaatttaaattaatttttttc	Protospacer
  ***.*  *********** ********* ****

13. spacer 2.18|360923|36|CP023671|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 9, identity: 0.75

aacttcttttttaaaagaaagaagtttcatagaaga	CRISPR spacer
tagtcattttttaaaagaaagaagtttctcagagag	Protospacer
 * *. ********************** .***...

14. spacer 2.19|360987|35|CP023671|CRISPRCasFinder,CRT,PILER-CR matches to MT178275 (Klebsiella virus KpS8, complete genome) position: , mismatch: 9, identity: 0.743

aaattacaaaaaacctcaaaaatcgaggtttagac	CRISPR spacer
tcaaaacaaaaaaccacacaaatcgaggttacaac	Protospacer
  *  ********** ** ***********  .**

15. spacer 2.32|361833|36|CP023671|CRISPRCasFinder,CRT,PILER-CR matches to LR026976 (Bacillus pumilus isolate 1 genome assembly, plasmid: p576) position: , mismatch: 10, identity: 0.722

tactcattgtcctggttatgctgaattcgaccttgt	CRISPR spacer
tactcattggcctggttaagctgaataaaaaatgta	Protospacer
********* ******** *******  .*  *

16. spacer 1.2|356620|37|CP023671|PILER-CR,CRISPRCasFinder,CRT matches to MK554696 (Fusobacterium phage Fnu1, complete genome) position: , mismatch: 12, identity: 0.676

aatactcaaatattctgtttatttcctctaaactgta	CRISPR spacer
atctctcaaatactctgtctatttcctctaggaatgg	Protospacer
* . ********.*****.***********..    .

17. spacer 2.11|360470|37|CP023671|CRISPRCasFinder,CRT matches to MH051335 (Escherichia phage vB_EcoM-Ro157lw, complete genome) position: , mismatch: 13, identity: 0.649

tttaattattttgaattattttaaattatttttaaaa	CRISPR spacer
-------attttgaattaatttaaattaattttttct	Protospacer
       *********** ********* ****

18. spacer 2.11|360470|37|CP023671|CRISPRCasFinder,CRT matches to NC_048194 (Escherichia phage vB_EcoM_WFH, complete genome) position: , mismatch: 13, identity: 0.649

tttaattattttgaattattttaaattatttttaaaa	CRISPR spacer
-------attttgaattaatttaaattaatttttttc	Protospacer
       *********** ********* ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

407806 : 420920

Prochlorococcus_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYE33276.1\|407806_409309_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	Q58MG4	Prochlorococcus_phage	2.4e-64	46.2
AYE33277.1\|409326_409938_-	phosphoribosylglycinamide formyltransferase	R9S626	Prochlorococcus_phage	2.3e-21	36.2
AYE33278.1\|409925_410927_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SQF5	Cyanophage	1.4e-65	44.4
AYE33279.1\|410936_412364_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	1.7e-56	33.6
AYE33280.1\|412415_413120_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	3.8e-44	42.5
AYE33281.1\|413119_413599_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	4.0e-29	48.4
AYE33282.1\|413611_417358_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	3.8e-26	24.6
AYE33283.1\|417854_418364_-	alkaline phosphatase	NA	NA	NA	NA
AYE33284.1\|418620_418776_-	cytochrome C551	NA	NA	NA	NA
AYE33285.1\|419064_419220_-	cytochrome C551	NA	NA	NA	NA
AYE33286.1\|419519_419924_-	hypothetical protein	NA	NA	NA	NA
AYE33287.1\|419981_420920_-	peptidase	A0A2K9KZA2	Tupanvirus	3.7e-23	34.9

DBSCAN-SWA_2

638715 : 693723

Tupanvirus(15.38%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYE33479.1\|638715_639684_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
AYE33480.1\|639694_641494_-	oligoendopeptidase F	NA	NA	NA	NA
AYE33481.1\|641526_641925_-	hypothetical protein	NA	NA	NA	NA
AYE33482.1\|642076_642472_+	hypothetical protein	NA	NA	NA	NA
AYE35806.1\|642533_643208_+	metal ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.1e-13	30.5
AYE33483.1\|643254_644046_+	metal ABC transporter permease	NA	NA	NA	NA
AYE33484.1\|644067_644484_-	transcriptional repressor	NA	NA	NA	NA
AYE33485.1\|644545_645103_-	hypothetical protein	NA	NA	NA	NA
AYE33486.1\|645290_646508_+	6-phosphofructokinase	NA	NA	NA	NA
AYE33487.1\|646541_647834_-	cysteine desulfurase	A0A2K9L2Y3	Tupanvirus	6.2e-45	31.7
AYE33488.1\|647968_648676_+	hypothetical protein	NA	NA	NA	NA
AYE35807.1\|648686_649301_+	DUF4397 domain-containing protein	NA	NA	NA	NA
AYE33489.1\|649350_650550_-	macrolide ABC transporter permease	NA	NA	NA	NA
AYE33490.1\|650567_651257_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-34	37.3
AYE33491.1\|651259_652108_-	hypothetical protein	NA	NA	NA	NA
AYE33492.1\|652274_654191_+	thiamine ABC transporter substrate-binding protein	A0A2K9L3Z8	Tupanvirus	1.1e-50	27.4
AYE33493.1\|654361_655582_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.7e-55	56.4
AYE33494.1\|655839_657078_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.7e-52	51.9
AYE33495.1\|657224_657665_-	dUTP diphosphatase	A0A1L2BX65	Bacteriophage	3.4e-35	49.4
AYE33496.1\|657765_658488_-	calcium-binding protein	NA	NA	NA	NA
AYE33497.1\|658573_660049_-	GGDEF-domain containing protein	NA	NA	NA	NA
AYE33498.1\|660254_661544_-	uracil permease	Q9KX94	Enterobacteria_phage	6.6e-55	33.3
AYE33499.1\|661896_662634_+	polysaccharide deacetylase	NA	NA	NA	NA
AYE33500.1\|662664_663198_-	tryptophan transporter	NA	NA	NA	NA
AYE33501.1\|663601_664963_-	MATE family efflux transporter	NA	NA	NA	NA
AYE33502.1\|665086_666109_+\|transposase	IS6 family transposase	NA	NA	NA	NA
AYE33503.1\|666412_666604_-	hypothetical protein	NA	NA	NA	NA
AYE33504.1\|666618_667848_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AYE33505.1\|669437_669626_-	DUF4250 domain-containing protein	NA	NA	NA	NA
AYE33506.1\|670011_670872_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
AYE33507.1\|670948_671815_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.0e-31	33.2
AYE33508.1\|671977_673006_+	hypothetical protein	NA	NA	NA	NA
AYE33509.1\|673044_673347_-	stress responsive protein	NA	NA	NA	NA
AYE33510.1\|673399_673861_-	antitermination protein NusB	NA	NA	NA	NA
AYE33511.1\|673890_675252_-	FAD-linked oxidase	NA	NA	NA	NA
AYE33512.1\|675385_676786_-	carbon starvation protein A	NA	NA	NA	NA
AYE33513.1\|676925_677639_-	DNA-binding response regulator	A0A2R2ZGH8	Clostridioides_phage	2.5e-19	32.1
AYE33514.1\|677654_679310_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	7.0e-49	27.5
AYE33515.1\|679432_679870_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
AYE33516.1\|679863_680505_-	pyroglutamyl-peptidase I	NA	NA	NA	NA
AYE33517.1\|680535_681465_-	DUF979 domain-containing protein	NA	NA	NA	NA
AYE33518.1\|681465_682167_-	DUF969 domain-containing protein	NA	NA	NA	NA
AYE33519.1\|682453_683389_-	hypothetical protein	NA	NA	NA	NA
AYE33520.1\|683521_684079_+	XRE family transcriptional regulator	NA	NA	NA	NA
AYE33521.1\|684237_685434_-	DUF2812 domain-containing protein	NA	NA	NA	NA
AYE33522.1\|685554_686091_-	hypothetical protein	Q4ZA70	Staphylococcus_virus	8.9e-30	45.1
AYE33523.1\|686939_688253_-	hypothetical protein	NA	NA	NA	NA
AYE33524.1\|688345_690613_-	hypothetical protein	NA	NA	NA	NA
AYE33525.1\|691275_692118_-	alpha/beta hydrolase	A0A2P1JTI7	Mycobacterium_phage	2.1e-09	29.2
AYE33526.1\|692287_692479_-	hypothetical protein	NA	NA	NA	NA
AYE33527.1\|692493_693723_-\|transposase	IS91 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2037142 : 2045860

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYE34585.1\|2037142_2037838_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	3.5e-42	37.3
AYE34586.1\|2037821_2039597_+	sensor histidine kinase	W8CYF6	Bacillus_phage	2.3e-26	29.0
AYE34587.1\|2039654_2040005_+	ArsC family transcriptional regulator	M1PLC0	Streptococcus_phage	1.8e-23	48.1
AYE34588.1\|2040215_2042447_+	ribonucleoside-diphosphate reductase subunit alpha	A0A127AW21	Bacillus_phage	1.0e-191	47.1
AYE34589.1\|2042482_2043517_+	ribonucleotide-diphosphate reductase subunit beta	A0A127AVZ3	Bacillus_phage	2.4e-71	40.7
AYE34590.1\|2043585_2043885_-	hypothetical protein	NA	NA	NA	NA
AYE34591.1\|2044240_2045860_+	phosphoenolpyruvate--protein phosphotransferase	A0A1V0SGR7	Hokovirus	5.6e-19	33.0

DBSCAN-SWA_4

2180847 : 2238879

Clostridium_phage(16.67%)

coat,transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYE34698.1\|2180847_2181858_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.0e-66	42.5
AYE34699.1\|2181889_2182912_+	alpha/beta hydrolase	NA	NA	NA	NA
AYE34700.1\|2183071_2184319_+\|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	1.7e-15	26.2
AYE34701.1\|2184507_2184807_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
AYE34702.1\|2185445_2186525_+	ethanolamine utilization protein EutH	NA	NA	NA	NA
AYE35854.1\|2186591_2187605_-	FAD:protein FMN transferase	NA	NA	NA	NA
AYE34703.1\|2187728_2188145_-	FMN-binding protein	NA	NA	NA	NA
AYE34704.1\|2188480_2188864_+	NusG domain II-containing protein	NA	NA	NA	NA
AYE34705.1\|2188874_2189387_+	heptaprenyl diphosphate synthase	NA	NA	NA	NA
AYE34706.1\|2189401_2190280_-	LysR family transcriptional regulator	NA	NA	NA	NA
AYE34707.1\|2190384_2191512_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
AYE34708.1\|2191508_2192633_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
AYE34709.1\|2192784_2193780_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
AYE34710.1\|2193787_2194582_+	hypothetical protein	NA	NA	NA	NA
AYE35855.1\|2194574_2195621_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
AYE34711.1\|2195669_2196791_-	glycosyltransferase family 1 protein	B6EFC4	Stygiolobus_rod-shaped_virus	1.9e-05	35.6
AYE34712.1\|2196896_2197898_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
AYE34713.1\|2197982_2198867_+	sporulation peptidase YabG	NA	NA	NA	NA
AYE34714.1\|2199084_2199321_+	hypothetical protein	NA	NA	NA	NA
AYE34715.1\|2199795_2201376_+	peptidoglycan-binding protein	NA	NA	NA	NA
AYE34716.1\|2201528_2202365_+	cyanophycinase	NA	NA	NA	NA
AYE34717.1\|2202345_2204964_+	cyanophycin synthetase	NA	NA	NA	NA
AYE34718.1\|2205103_2205946_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
AYE34719.1\|2206007_2206655_+	stage II sporulation protein R	NA	NA	NA	NA
AYE34720.1\|2206751_2207741_+	DUF814 domain-containing protein	NA	NA	NA	NA
AYE34721.1\|2207753_2208170_+	DUF1934 domain-containing protein	NA	NA	NA	NA
AYE34722.1\|2208285_2208591_+	hypothetical protein	NA	NA	NA	NA
AYE34723.1\|2208760_2210368_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.2e-151	51.4
AYE34724.1\|2210725_2212120_+	transcription termination factor Rho	NA	NA	NA	NA
AYE34725.1\|2212150_2213251_-	UDP-N-acetylglucosamine--LPS N-acetylglucosamine transferase	NA	NA	NA	NA
AYE34726.1\|2213387_2213594_-	50S ribosomal protein L31	NA	NA	NA	NA
AYE34727.1\|2213880_2214468_+	thymidine kinase	A0A249XXF6	Clostridium_phage	1.7e-53	54.2
AYE34728.1\|2214491_2216249_+	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA
AYE34729.1\|2216312_2217398_+	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	9.0e-05	36.8
AYE34730.1\|2217456_2218047_+	hypothetical protein	NA	NA	NA	NA
AYE34731.1\|2218064_2219114_+	L-threonylcarbamoyladenylate synthase	S4VW33	Pandoravirus	9.9e-49	36.5
AYE34732.1\|2219191_2219641_+	ribose 5-phosphate isomerase B	NA	NA	NA	NA
AYE34733.1\|2219692_2220322_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
AYE34734.1\|2220600_2221095_+	cytidine deaminase	A0A2H5BMD7	Streptomyces_phage	7.5e-15	37.4
AYE34735.1\|2221112_2222264_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	9.9e-26	26.4
AYE34736.1\|2222382_2223564_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
AYE34737.1\|2224266_2224629_+	hypothetical protein	NA	NA	NA	NA
AYE34738.1\|2224629_2225310_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
AYE34739.1\|2225329_2225563_+	ATP synthase F0 subunit C	NA	NA	NA	NA
AYE34740.1\|2225603_2226083_+	ATP synthase F0 subunit B	NA	NA	NA	NA
AYE34741.1\|2226085_2226625_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
AYE34742.1\|2226635_2228150_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
AYE34743.1\|2228186_2229038_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
AYE34744.1\|2229053_2230445_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
AYE34745.1\|2230459_2230867_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
AYE34746.1\|2230998_2232228_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AYE34747.1\|2232242_2232434_+	hypothetical protein	NA	NA	NA	NA
AYE34748.1\|2232715_2233363_+	hypothetical protein	NA	NA	NA	NA
AYE34749.1\|2233384_2234644_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
AYE34750.1\|2234830_2235877_+	stage II sporulation protein D	Q2XU88	Pseudomonas_phage	7.5e-41	38.8
AYE34751.1\|2236054_2236804_+	M23 family peptidase	NA	NA	NA	NA
AYE34752.1\|2236883_2237135_+	sporulation transcriptional regulator SpoIIID	M9Q261	Clostridium_phage	3.1e-17	57.3
AYE34753.1\|2237262_2238297_+	rod shape-determining protein	NA	NA	NA	NA
AYE34754.1\|2238348_2238879_-\|protease	spore protease YyaC	G3M9W0	Bacillus_virus	1.3e-17	38.0

DBSCAN-SWA_5

2853304 : 2896667

Clostridium_phage(41.94%)

integrase,tail,portal,capsid

attL 2855922:2855945|attR 2905169:2905192

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYE35271.1\|2853304_2854294_+	lactate dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	3.4e-59	40.4
AYE35272.1\|2854293_2855295_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	5.7e-22	27.8
AYE35273.1\|2855309_2855963_+	TIGR00266 family protein	NA	NA	NA	NA
2855922:2855945	attL	NA	NA	NA	NA
AYE35274.1\|2856007_2857087_-\|integrase	site-specific integrase	Q8SBN2	Clostridium_phage	3.3e-23	29.4
AYE35275.1\|2857133_2857592_-	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTX7	Clostridium_phage	7.3e-41	55.3
AYE35276.1\|2858305_2858506_+	hypothetical protein	NA	NA	NA	NA
AYE35277.1\|2858787_2859075_+	transcription factor	NA	NA	NA	NA
AYE35278.1\|2859136_2859334_+	hypothetical protein	NA	NA	NA	NA
AYE35279.1\|2859568_2859823_+	hypothetical protein	A0A0A7S062	Clostridium_phage	5.0e-15	48.1
AYE35280.1\|2859973_2861896_+	hypothetical protein	D7RWF8	Brochothrix_phage	7.0e-77	32.5
AYE35281.1\|2861897_2862365_+	hypothetical protein	NA	NA	NA	NA
AYE35282.1\|2862376_2862649_+	hypothetical protein	NA	NA	NA	NA
AYE35283.1\|2862666_2863560_+	recombinase RecT	S0A2Z5	Cellulophaga_phage	2.1e-52	44.7
AYE35284.1\|2863559_2864258_+	MBL fold metallo-hydrolase	A0A0A0RVF5	Bacillus_phage	9.4e-56	49.1
AYE35285.1\|2864283_2864862_+	metal-dependent phosphohydrolase	A0A2H4J8L1	uncultured_Caudovirales_phage	7.8e-48	48.7
AYE35286.1\|2864863_2865268_+	single-stranded DNA-binding protein	Q8SBL5	Clostridium_phage	1.4e-40	61.6
AYE35287.1\|2865317_2865962_+	ERCC4-type nuclease	F8UBF1	Clostridium_phage	8.5e-43	43.3
AYE35288.1\|2865964_2866189_+	hypothetical protein	NA	NA	NA	NA
AYE35289.1\|2866202_2868797_+	DNA primase	NA	NA	NA	NA
AYE35290.1\|2868810_2868996_+	hypothetical protein	NA	NA	NA	NA
AYE35291.1\|2868988_2869183_+	hypothetical protein	NA	NA	NA	NA
AYE35292.1\|2869362_2870160_+	hypothetical protein	NA	NA	NA	NA
AYE35293.1\|2870308_2870749_+	hypothetical protein	NA	NA	NA	NA
AYE35294.1\|2870869_2871244_+	hypothetical protein	L0LC12	Bacillus_phage	1.1e-05	31.2
AYE35295.1\|2871336_2871765_+	hypothetical protein	NA	NA	NA	NA
AYE35296.1\|2871775_2871970_+	hypothetical protein	NA	NA	NA	NA
AYE35297.1\|2872093_2872624_+	hypothetical protein	S6AVW3	Thermus_phage	3.7e-12	33.0
AYE35298.1\|2872623_2872881_+	hypothetical protein	NA	NA	NA	NA
AYE35299.1\|2873402_2873837_+	RNA polymerase subunit sigma	A0A0A8WIL5	Clostridium_phage	3.0e-12	33.3
AYE35300.1\|2873992_2874442_+	resolvase	A0A2H4J863	uncultured_Caudovirales_phage	1.8e-31	57.1
AYE35301.1\|2874682_2876449_+	hypothetical protein	A0A1V0DZW7	Clostridioides_phage	1.7e-226	66.7
AYE35302.1\|2876460_2877792_+\|portal	portal protein	A0A1V0DZW8	Clostridioides_phage	1.8e-100	48.4
AYE35303.1\|2879227_2879428_+	hypothetical protein	NA	NA	NA	NA
AYE35304.1\|2879493_2879802_+	hypothetical protein	A0A2K9V384	Faecalibacterium_phage	6.9e-11	43.4
AYE35305.1\|2879816_2880080_+	hypothetical protein	A0A0S2MYE7	Enterococcus_phage	4.4e-30	70.9
AYE35306.1\|2880220_2880856_+	DUF4355 domain-containing protein	NA	NA	NA	NA
AYE35307.1\|2880870_2881242_+	hypothetical protein	NA	NA	NA	NA
AYE35308.1\|2881260_2882286_+\|capsid	major capsid protein E	S5MA55	Brevibacillus_phage	3.1e-63	41.2
AYE35309.1\|2882335_2882608_+	hypothetical protein	NA	NA	NA	NA
AYE35310.1\|2882612_2883023_+	hypothetical protein	NA	NA	NA	NA
AYE35311.1\|2883024_2883384_+\|capsid	capsid protein	F6K8R4	Clostridium_phage	9.5e-20	43.9
AYE35312.1\|2883380_2883815_+	chloramphenicol resistance protein	A0A1J1J8Y6	Escherichia_phage	4.7e-37	55.2
AYE35313.1\|2883820_2884303_+	hypothetical protein	NA	NA	NA	NA
AYE35314.1\|2884315_2884669_+	AP endonuclease	NA	NA	NA	NA
AYE35315.1\|2884671_2885274_+	hypothetical protein	F6K8R8	Clostridium_phage	4.2e-60	58.5
AYE35316.1\|2885326_2885857_+	hypothetical protein	NA	NA	NA	NA
AYE35871.1\|2885892_2886039_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
AYE35317.1\|2886109_2886439_+\|tail	phage tail tape measure protein	A0A0A7S163	Clostridium_phage	6.1e-13	74.6
AYE35318.1\|2886800_2888957_+\|tail	phage tail tape measure protein	Q0SPL2	Clostridium_phage	1.7e-71	60.3
AYE35319.1\|2888956_2889655_+\|tail	phage tail protein	A0A1B2APY0	Phage_Wrath	4.7e-39	38.4
AYE35320.1\|2889657_2891067_+	lysin	A0A1B2APX2	Phage_Wrath	4.2e-87	47.4
AYE35321.1\|2891068_2891347_+	hypothetical protein	NA	NA	NA	NA
AYE35322.1\|2891348_2894981_+	hypothetical protein	A0A1S5S9Z9	Streptococcus_phage	1.8e-12	40.5
AYE35323.1\|2895017_2895251_+	hypothetical protein	Q24LG5	Clostridium_phage	7.3e-13	47.4
AYE35324.1\|2895266_2895548_+	hypothetical protein	A0A0A8WF70	Clostridium_phage	6.8e-13	45.7
AYE35325.1\|2895617_2896667_+	N-acetylmuramoyl-L-alanine amidase	A0A1L6BY22	Clostridium_phage	2.7e-22	36.8
2905169:2905192	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3282095 : 3289733

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYE35659.1\|3282095_3282614_+	NUDIX hydrolase	A0A2K9VCP4	Lactobacillus_phage	5.1e-14	32.6
AYE35660.1\|3282771_3283407_+	stage II sporulation protein M	NA	NA	NA	NA
AYE35661.1\|3283476_3284355_+	recombinase XerD	A0A142F1N9	Bacillus_phage	7.8e-23	26.7
AYE35890.1\|3284401_3285568_+	phosphopentomutase	NA	NA	NA	NA
AYE35662.1\|3285612_3286917_+	pyrimidine-nucleoside phosphorylase	A0A0H3UZD4	Geobacillus_virus	1.3e-130	57.8
AYE35891.1\|3287137_3288271_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	3.1e-32	29.9
AYE35663.1\|3288385_3289129_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	6.0e-08	23.5
AYE35664.1\|3289121_3289733_+	segregation/condensation protein B	A0A1B1IVT7	uncultured_Mediterranean_phage	6.2e-19	32.8

DBSCAN-SWA_7

3297895 : 3328834

Clostridium_phage(42.86%)

capsid,portal,integrase,terminase,tail,head

attL 3288030:3288045|attR 3315075:3315090

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3288030:3288045	attL	NA	NA	NA	NA
AYE35671.1\|3297895_3298318_-	transcriptional regulator	A0A1V0E015	Clostridioides_phage	1.9e-11	41.2
AYE35672.1\|3298954_3299167_+	hypothetical protein	NA	NA	NA	NA
AYE35673.1\|3299259_3299814_-	hypothetical protein	NA	NA	NA	NA
AYE35674.1\|3299899_3300139_+	hypothetical protein	M9Q1J2	Clostridium_phage	3.1e-06	53.2
AYE35675.1\|3300840_3301644_+	hypothetical protein	I2E8X7	Clostridium_phage	2.4e-39	38.7
AYE35893.1\|3301672_3302782_+	hypothetical protein	A0A2H4J025	uncultured_Caudovirales_phage	2.6e-15	41.1
AYE35676.1\|3302806_3303121_-	hypothetical protein	NA	NA	NA	NA
AYE35677.1\|3303568_3303802_+	hypothetical protein	A0A2H4JCC5	uncultured_Caudovirales_phage	1.5e-13	55.1
AYE35678.1\|3303806_3304400_+	HNH endonuclease	A0A1S5SBU7	Streptococcus_phage	2.5e-33	43.2
AYE35679.1\|3304451_3304685_+	DUF370 domain-containing protein	NA	NA	NA	NA
AYE35894.1\|3304959_3305292_+	helix-turn-helix domain containing protein	M9Q1J7	Clostridium_phage	1.8e-17	45.3
AYE35680.1\|3305420_3306065_+\|integrase	integrase	F6K8Q2	Clostridium_phage	1.1e-31	44.3
AYE35681.1\|3306543_3307158_+	resolvase	A0A1V0E035	Clostridioides_phage	9.6e-20	36.0
AYE35682.1\|3307188_3307911_+	hypothetical protein	M9Q2K7	Clostridium_phage	2.3e-52	50.6
AYE35683.1\|3307903_3309187_+\|terminase	PBSX family phage terminase large subunit	B6CXD2	Clostridium_phage	8.2e-98	45.3
AYE35684.1\|3309348_3310740_+\|portal	phage portal protein	D7RWI5	Brochothrix_phage	3.2e-79	38.1
AYE35685.1\|3310729_3312454_+\|head	phage head morphogenesis protein	A0A0A7RVY7	Clostridium_phage	1.3e-111	40.5
AYE35686.1\|3312459_3312807_+	hypothetical protein	NA	NA	NA	NA
AYE35687.1\|3313052_3313316_+	hypothetical protein	A0A0S2MYE7	Enterococcus_phage	7.4e-30	69.8
AYE35688.1\|3313424_3314072_+	DUF4355 domain-containing protein	A0A2H4J4U9	uncultured_Caudovirales_phage	9.1e-21	43.7
AYE35689.1\|3314093_3315002_+\|capsid	capsid protein	A0A0A8WFI8	Clostridium_phage	5.5e-64	47.2
AYE35690.1\|3315013_3315349_+	hypothetical protein	D7RWJ1	Brochothrix_phage	1.2e-16	42.4
3315075:3315090	attR	NA	NA	NA	NA
AYE35691.1\|3315332_3315647_+	hypothetical protein	A0A2H4J6Q5	uncultured_Caudovirales_phage	9.2e-19	43.0
AYE35692.1\|3315649_3316123_+	hypothetical protein	A0A2H4J4Y3	uncultured_Caudovirales_phage	2.0e-17	36.8
AYE35693.1\|3316119_3316476_+	hypothetical protein	A0A2H4JDU4	uncultured_Caudovirales_phage	3.7e-32	61.2
AYE35694.1\|3316493_3316901_+\|tail	phage tail protein	M1PSJ7	Streptococcus_phage	8.8e-46	71.1
AYE35695.1\|3316978_3317374_+	hypothetical protein	NA	NA	NA	NA
AYE35696.1\|3317505_3317808_+	hypothetical protein	NA	NA	NA	NA
AYE35697.1\|3317804_3321896_+	hypothetical protein	A0A2H4J4V9	uncultured_Caudovirales_phage	1.1e-71	51.4
AYE35698.1\|3321911_3322256_+	hypothetical protein	A0A1S5SCJ5	Streptococcus_phage	1.9e-33	56.6
AYE35699.1\|3322268_3322517_+	hypothetical protein	NA	NA	NA	NA
AYE35700.1\|3322503_3322881_+	hypothetical protein	M9Q2L1	Clostridium_phage	1.9e-18	44.1
AYE35701.1\|3323065_3326395_+	hypothetical protein	M9Q2I5	Clostridium_phage	5.5e-45	38.2
AYE35702.1\|3326566_3326992_+	hypothetical protein	M9Q253	Clostridium_phage	3.5e-45	64.2
AYE35703.1\|3327041_3328019_+	N-acetylmuramoyl-L-alanine amidase	Q8SBN4	Clostridium_phage	1.1e-46	48.4
AYE35704.1\|3328624_3328834_+	acid-soluble spore protein	G3MAF8	Bacillus_virus	2.9e-05	39.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP023671

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection