CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP032097	Arcobacter ellisii strain LMG 26155 chromosome, complete genome	2 crisprs	csa3,cas6,PrimPol,DEDDh,PD-DExK,WYL,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas1,cas2,csx1,casR	0	7	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP032097_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032097_2

1393596-1393678

Orphan

Consensus_repeat	Method
TGTCGGATTAAAGTTCCTTCCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP032097_2

>merge|CP032097|2|1393596-1393678|CRISPRCasFinder
TGTCGGATTAAAGTTCCTTCCTACAGCCCACTCTAGGAGAGAAAATAGTTGAAACTTGACTGTCGGATTAAAGTTCCTTCCAA

>CP032097|2|1|1393596-1393678|CRISPRCasFinder
TGTCGGATTAAAGTTCCTTCCTA	CAGCCCACTCTAGGAGAGAAAATAGTTGAAACTTGAC
TGTCGGATTAAAGTTCCTTCCAA

Protein	Signature genes	Signature genes Name	Protein_function
CP032097.1\|AXX95086.1\|1379204_1379858_+\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|235647
CP032097.1\|AXX95095.1\|1392527_1392980_+\|hypothetical-protein	unknown	unknown	unknown
CP032097.1\|AXX95096.1\|1393816_1394458_+\|hypothetical-protein	unknown	unknown	unknown
CP032097.1\|AXX95099.1\|1396874_1397312_+\|RDD-family-membrane-protein	unknown	unknown	gnl\|CDD\|377640
CP032097.1\|AXX95089.1\|1384268_1385507_-\|type-I-restriction/modification-system,-specificity-subunit	unknown	unknown	gnl\|CDD\|341135
CP032097.1\|AXX95104.1\|1402811_1404902_+\|chemotaxis-sensory-histidine-kinase	unknown	unknown	gnl\|CDD\|223716
CP032097.1\|AXX95092.1\|1388096_1388936_-\|transposase-associated-protein,-IS21-family	unknown	unknown	gnl\|CDD\|181681
CP032097.1\|AXX95098.1\|1395601_1396867_+\|phosphoribosylamine-glycine-ligase	unknown	unknown	gnl\|CDD\|234856
CP032097.1\|AXX95101.1\|1399427_1400078_+\|putative-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|224837
CP032097.1\|AXX95094.1\|1391614_1392247_+\|resolvase	unknown	unknown	gnl\|CDD\|184041
CP032097.1\|AXX95102.1\|1400084_1402259_+\|polynucleotide-phosphorylase	unknown	unknown	gnl\|CDD\|236995
CP032097.1\|AXX95105.1\|1404907_1405753_+\|MCP-protein-methyltransferase	unknown	unknown	gnl\|CDD\|224271
CP032097.1\|AXX95093.1\|1388932_1390435_-\|transposase,-IS21-family	unknown	unknown	gnl\|CDD\|366234
CP032097.1\|AXX95097.1\|1394448_1395144_+\|putative-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|378235
CP032097.1\|AXX95103.1\|1402426_1402795_+\|chemotaxis-regulatory-protein	unknown	unknown	gnl\|CDD\|381110
CP032097.1\|AXX95088.1\|1381389_1384254_-\|type-I-restriction/modification-system,-restriction-subunit	unknown	unknown	gnl\|CDD\|223683
CP032097.1\|AXX95090.1\|1385499_1385727_-\|hypothetical-protein	unknown	unknown	unknown
CP032097.1\|AXX95100.1\|1397304_1399428_+\|lipooligosaccharide-transport-system,-OM-translocon-component-LptD	unknown	unknown	gnl\|CDD\|224369
CP032097.1\|AXX95087.1\|1380151_1381384_+\|site-specific-tyrosine-recombinase,-phage-integrase-family-(INT_C_like_1-domain)	unknown	unknown	gnl\|CDD\|271184
CP032097.1\|AXX95091.1\|1385738_1387298_-\|type-I-restriction/modification-system,-methylation-subunit	unknown	unknown	gnl\|CDD\|211578

Protein	Function_ID	Function_description	E-value
CP032097.1\|AXX95086.1\|1379204_1379858_+\|uroporphyrinogen-III-synthase	gnl\|CDD\|235647	PRK05928, hemD, uroporphyrinogen-III synthase; Reviewed.	9.47236e-41
CP032097.1\|AXX95088.1\|1381389_1384254_-\|type-I-restriction/modification-system,-restriction-subunit	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
CP032097.1\|AXX95099.1\|1396874_1397312_+\|RDD-family-membrane-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	1.50574e-16
CP032097.1\|AXX95089.1\|1384268_1385507_-\|type-I-restriction/modification-system,-specificity-subunit	gnl\|CDD\|341135	cd17246, RMtype1_S_SonII-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Shewanella oneidensis MR-1 S subunit (S.SonII) TRD2-CR2. This model contains Shewanella oneidensis MR-1 S subunit (S.SonII) TRD2-CR2 and similar TRD-CR's. S.SonII recognizes 5'... GTCANNNNNNRTCA ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases. S.SonII TRD1-CR1 does not belong to this subfamily.	1.70324e-28
CP032097.1\|AXX95092.1\|1388096_1388936_-\|transposase-associated-protein,-IS21-family	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	2.23296e-77
CP032097.1\|AXX95098.1\|1395601_1396867_+\|phosphoribosylamine-glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
CP032097.1\|AXX95101.1\|1399427_1400078_+\|putative-phosphoribosyltransferase	gnl\|CDD\|224837	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only].	1.12361e-33
CP032097.1\|AXX95094.1\|1391614_1392247_+\|resolvase	gnl\|CDD\|184041	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase.	3.0145e-45
CP032097.1\|AXX95102.1\|1400084_1402259_+\|polynucleotide-phosphorylase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
CP032097.1\|AXX95105.1\|1404907_1405753_+\|MCP-protein-methyltransferase	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	2.28051e-62
CP032097.1\|AXX95093.1\|1388932_1390435_-\|transposase,-IS21-family	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	3.66179e-15
CP032097.1\|AXX95097.1\|1394448_1395144_+\|putative-phage-regulatory-protein	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	7.89362e-34
CP032097.1\|AXX95104.1\|1402811_1404902_+\|chemotaxis-sensory-histidine-kinase	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
CP032097.1\|AXX95103.1\|1402426_1402795_+\|chemotaxis-regulatory-protein	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.39568e-60
CP032097.1\|AXX95100.1\|1397304_1399428_+\|lipooligosaccharide-transport-system,-OM-translocon-component-LptD	gnl\|CDD\|224369	COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane].	1.56412e-55
CP032097.1\|AXX95087.1\|1380151_1381384_+\|site-specific-tyrosine-recombinase,-phage-integrase-family-(INT_C_like_1-domain)	gnl\|CDD\|271184	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain containing six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	4.10671e-22
CP032097.1\|AXX95091.1\|1385738_1387298_-\|type-I-restriction/modification-system,-methylation-subunit	gnl\|CDD\|211578	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). [DNA metabolism, Restriction/modification].	4.59603e-144

>CP032097.1|AXX95095.1|1392527_1392980_+|hypothetical-protein
MATNRKYIAKVQRSKVDMKETVIELSPNAFKLLNLIYYEILKDENLADDKAMKQLGVSRRPYYKAKDELKEKGYIKIVQVGSTKYKWYVGKEAISKDDLKYQNKKRKDDELFAQLVLEGISINNQDFKSKESGVFVLEGFEQDFEDEIVI
>CP032097.1|AXX95094.1|1391614_1392247_+|resolvase
MTIGYLRVSTDKQTVENQKSEIRAYCNDKLKITVDDWIEVVMSSRKDLRDRKIDELLSVLSKDDKVIVSELSRLGRSTQEVLQTIERLMNLHVELHIIKNNLVINPNNKNDFVSKAMVTLFGLFAELERDLISQRTKEALKSRKEQGVKLGKPEGTLQKSKYDEYKDRIIELKNLGLSLNKIVSNHLEPVMGKGNCSVQSLSTYITKRGL
>CP032097.1|AXX95093.1|1388932_1390435_-|transposase,-IS21-family
MEDWVTIRNLKKKDPNLGTRTIALMLGISRNTVKKALASDELPLYNRGEKKINEAVEPFIDFIKESFLKKNLKASRILKDIKSKGYRGSQYALYAYIREILKPIANDVSKNSPHAYMRYETKPAEQMQYDWSPYTVTIGENLVKINIHQTILGFSRYKFYDVSLNVSGSDVYTALEESFIFFGGVCERIQVDNATVFITNASKDNLIWNPRFLSLCGLYGIKPTRSMPSHPWSKGKVESPFSYLETHFISGNEFKSFEDLRERLKQFQDEHNLEIHGTTKQISKILFEKEEQSFLKPLPINPITGELKRYVGFKEEFRKANSECLVSYKGNKYSVPHYFASKEVWLRVLYGTTLQIYSSKNKLIATHTISLKKGEVLVNKEHFFGYRKESQFDSIAISISRLIKRFANYINIHKFIENIKVQKRISPAYHLYKIANLFEYYDEADCIMAMEEAISLNIYSFSFIKGTITHQTKPKNEQLNLFNIKLPQANIKRDLGDYKL
>CP032097.1|AXX95092.1|1388096_1388936_-|transposase-associated-protein,-IS21-family
MRTKNTTNLRNSGPVNLENGSLKANIESYCKLLSLSSVADNYESAALDAAKAKLSYQDYLYKLLQQQIVDRVDRSVNARIKKAGFKYMATLDEFDFSFQPQIDEKLIRELATLSFLDSATNVLLVGAPGVGKTHLSIALGLEATKQRRRVKFISAEDLTNELIAANHSNTITDYLESMSRIELLIIDEIGYLDLSREVASLFFRLISKRYEKSSTIITSNKEFQEWGQIFNDDVIATAILDRLLHHSHPFLINGPSYRMKDLLPKSKKKQNLENKNNEI
>CP032097.1|AXX95091.1|1385738_1387298_-|type-I-restriction/modification-system,-methylation-subunit
MSEENKKVLEQQLWNIANTLRGKMDADEFRDYILGFIFYKYLSEKMEDYANEILVEDGKTYFEIIGSKDEEDYISAIKEEAIEKLGYFLRPEELFSQIAKRGNGTSNNFILEDLTSILRNIEQTTMGHESEDDFVHLFEDLDLTSTKLGKTVEARNKLIVQVLTHLDKINFELKNHDRDVLGDAYEYLIGQFAAGAGKKAGEFYTPQQVSKILAKIVTNGKSKLKSVYDPTCGSGSLLLRVAKEVDDVSNFYGQELNRTTYNLARMNMIMHDVHYRKFSIKQEDTLEHPQHLSERFEAIVANPPFSAQWSANDLFMSDDRFSQYGKLAPSSKADFAFVQHMIYHLDDNGTMAIVLPHGVLFRGSAEGHIRKYLIEDRNYLDAVIGLPSNIFYGTSIPTCILVFKKCREDSENVLFIDASNDFEKAKNQNYLTEENIEKIVNTYAKREEIEKYSHLASMDEIRENDYNLNIPRYVDTFEEEEQIDLDKVSSELKALEIDMKTTDEIIAKFCDELGIAKPF
>CP032097.1|AXX95090.1|1385499_1385727_-|hypothetical-protein
MGNIINNQMIEDIRNLLINSRLLIQETVSLKLSWTHNLIFSIQDLVSNKYLPTVEELQKELLRERNLLLKGSDNE
>CP032097.1|AXX95089.1|1384268_1385507_-|type-I-restriction/modification-system,-specificity-subunit
MSKNMNVPKLRFKEFSGDWEKIKIQNLIDNKSIISHLDGNHGALYPKSDEFTKNGIPYVTANDFINGKVNLKKCKCLPIERASKFKKGIAKNGDVLFAHNATVGPVALLETDFDYVVLSTTATYYRCDNQRLLNNYLKVYFNTNDFIEQYSRVMSQSTRNQVPITTQRLFYVQLPSKQEQEKIASFLTSVDTKIEQLTRKEELLQQYKKGVMQKIFSQEIRFKADDGSEFPEWKWKYGNEIFQTITNKNHSSELPILAITQEYGAIPRDMIDYQISVTDKSVATYKVVEIGDFIISLRSFQGGIEYSNYKGICSPAYIILRPHIEVEDRLYKLYMKTDNYIKELNKNIEGIRDGKMISFKQFSEIKLPYPSIEEQTKIANFLSSIDSKIEQVQKQLDSTKEFKKALLQQMFV
>CP032097.1|AXX95088.1|1381389_1384254_-|type-I-restriction/modification-system,-restriction-subunit
MSKQSEAVLEENLVKQLASQGYEKVTIKDEEQLKANLKSQLEKHNKTTLSNTEFAKILNHLNKGNVFEKAKILRDKYALLRDDNTTITYIEFLDSEHWCQNLFQVTQQVTIDGAYKNRYDVTILINGLPLVQIELKRRGLELKEAFNQINRYQKHSYGFNSALFHYVQIFVISNGVNTKYYSNNKKQTFKQTFFWADKNNKNITNLEEFTTIFLEKCHISKMICKYIVLAEVPKILMILRPYQYYAVEAIVDRVKNTNKNGYIWHTTGSGKTLTSFKASQILVKLPEVDKVVFVVDRKDLDYQTSKEFNSFSDGSVDGTDNTKVLVNQFLGVHRDKKGVTKDSDLIITTIQKLNTAISKPHYLKDMEALKDKKIVFIFDECHRSQFGETHKNITNFFTNAQLIGFTGTPIFPENAVGNKFGKRTTAELFNEILHRYVITDAISDDNVLKFSVEYIGRYKRKDNDEVFKDFEVEGIDTKELMEDDKRLEQIVDYIITNHDRKTHSKEFTAMMCVSSVEVLCKYYELFKKKKHNLKIATIFSYSANEEDKGADGIYDLEESDGAHIDESHINKHSRDKLEEYISDYNKTFDTKFTTKDSQSFYNYYNDISKRVKEAQIDILLVVNMFLTGFDSPRLNTLYVDKNLKYHGLIQAYSRTNRILGEKKSQGNIVCFRNLKKYTDDAIALFSNKEAKDIILMKPYDTYVKKFNEAFVELIKIAPSVNSVDEIIDEEKQLDFIKAFRELIRLKNILEGFSEFKWSDLSMTEQQFEDYKSKYLDLYEKIKAQKGGLGDGKTSILNDVDFELELIHRDEINVSYILKLLAKYKESSKEHKAKQRENIINTINSNPQLRSKKELIEKFIDTTLEGINPEEIEEEFDKFVEEERTVAFEVLCAQEKLHTDKLKDVIDTYLYDGRKPLNDDVAGTLQVKPKLLERKTIIPRVLDKIVDFVEKFYDR
>CP032097.1|AXX95087.1|1380151_1381384_+|site-specific-tyrosine-recombinase,-phage-integrase-family-(INT_C_like_1-domain)
MSVNQLIPTLNTNKYGVYYLRFRVSKRLRRFFDKEYITKTLSTKEYKKAKVKAMVYRSRYLELLEVSDWIDDDTLKLKVDDYTKNILKLVIPDKLETQTKQDLGLNIKEAFALYDKWYKKQNISEHQYKLVIKRLGTAINYFGESKLVRELTTDDIEEYIDFLTTYPNPLKSPYKSMSFKEILQLTNVPSKDFISSSTVIKYIKAFRQLENFLVDDGKIDRKISKRAKLPTPSTVSVNPFNEDDLKILHKEFDMLGDLGLIYYTFAYTGMRTSEFWKCRIGCKDKIYYFDLSYKGVELKTASSRRLIPIHSKLIDKGILNSLKHLQSNYKQSTVSNTFNNKVINSIKDKKNKVMYGFRHTVATNLKRADVDIDKISEILGHCYENTSMTKTVYTNGYTLKQLKEAIECLM
>CP032097.1|AXX95086.1|1379204_1379858_+|uroporphyrinogen-III-synthase
MAKIYLLNSQKYEGIENLEVFQIEFLKKNIDLTKYDALIFTSKNAIYSLDSSNKDWKDVPSYAIAPKTASIIKSLGGKISFIGNSGHGNDFAYELIPLLKDKKALYIKALKTVSDLPKILKENDIFVDEVITYKTSCKESNKVLEDNSIFIFTSPSTIECFFKQYSWKDSYKAIVIGKTTAKYLPKDVNYEISLETSVDECIKLAKQNFFKLNFNHN
>CP032097.1|AXX95096.1|1393816_1394458_+|hypothetical-protein
MKQTEKYKMRFGASIMGDTDYIMIRNEFLKSKKVFSRFKKLEKAEGFSWYEVENARQLITTFNWKNTSEGYSYWNKIHTEWLEYIGIFGKYNNLKQYETALEKVAVFKSLLSEIDKDGFDAFLSAFITDNEDLELFINDTLLKTFLGGYSNSSVIKIWLDDYHLEQDYWKNILEKMKKIDFLMYELDNNPTLKASFLRTIPLDELFSEDDLCN
>CP032097.1|AXX95097.1|1394448_1395144_+|putative-phage-regulatory-protein
MQLISKHKIKGENIPVTTSRKVAEIFEKRHADVIRAIENLIDGGDPNFGLSSNELNIALVKMFFISQYKDKKGETRKEYLLTQDGFTLLAMGFTGPKALEFKLAYIKAFNEMKKELEDFRFQRKIAKEGYKGLTGSLKDELGDDAKIYHFSNEADMLNKIVLGLTAKQYCDIHQVDRKCMRDHLSSKDLEVISELEKYDEFLIRRGFTYKQREEELSEYHLRRLRKTLEVA
>CP032097.1|AXX95098.1|1395601_1396867_+|phosphoribosylamine-glycine-ligase
MNILILGSGGREYSIGLAIYKENAHNLYFMPGNGATDRLGTNINIKDYNQLAVWAKDNSIDLTIVGPEAPLVDGVVDIFKQNGLVIFGPSAAAAQLEGSKVYMKNILKKYNIPTAAFIETSNEKEAFDFIDTMSEPIVVKADGLCAGKGVIIAQTKDEAKKAASEMLSGAAFGDAGTSIVVEEYLDGYELSVFAICDGENYKVLPAAQDHKRIGDGDTGPNTGGMGAYAPTPLVNDDIYKKIEERVIKPTLKGMQQEGAPFEGVLFIGVMVVKGEPIILEYNVRFGDPECEILMPLLATPVSELFYKGATKQLDKLDIKIKDEFGVGVVMASGNYPYGSSAPAEIIVDEIVDADLLENSHISYAGVEKIDDKLMATGGRVLVCVGFGKSIKEARNRAYALCGQVHFAGKKCRTDIAYQALK
>CP032097.1|AXX95099.1|1396874_1397312_+|RDD-family-membrane-protein
MQNNTNNLQLASMRSRAFAYVIDDLLVTLIIMIIFWENIYAVSNDPDALMYLMKAELVMPLIVLKVIYHTFFVWYYGATIGKIVAKIRVIDANNWGRVNLFSSLLRAVGRIFSEMFFYVGFLLGFFNDGRKTFHDITGKTLVVNV
>CP032097.1|AXX95100.1|1397304_1399428_+|lipooligosaccharide-transport-system,-OM-translocon-component-LptD
MYKKIIGSLLITSALLQGQEINNEKFQLIAKNIDAKDNIITATGSVVIYSPTYYLSADKIIFDKEKETFELFDNVLIIKENNIQTQSEHAFVDLKNDTSNQYPMFLFENSNNIWLNSKESNKEKEIVKLESSIISSCDCLNPIWSIRTSSADYDTENKWINAYNPRLYIKDVPVFYSPYFGFPTDTTRRTGLLLPTLGFSEGEGLYYSQPIYFAPAQNYDLELIPQIRTQRGKGIYGYYRYADSPDSLLKIKSGVFVENEDYREENLLEHKEHFGLDIDYSRRNIFTNSQTSESTDGLYTAIKYLNDVEYITLEESDYTLSTDKKVESKINYFYNTPDYYTGAYSRYYIDTSKDSNSQTLQELPQVQFHSYNKEAFVDNLVYSLDTKVMNYTRPEGLTSTIYEVSAPISYTKYLLDDFMYLTLENKIVVSKYDYDNFYDSTYEDGNLIQNRASILLGSDLIKPYENYLHTVNLGAEYVIPKNLKEDGDLYKITTVSGSTKEEELKAFPINQEEKNINLTLNQSLYMKDSLKQFINHKMSQSILYDEVDNPKLQDFENYVKINHDFGYISGRVVYNMQDEQFVEDTFSNTLTYEDLSFTLGYYKSKETPNTDKEDLESYRVSTSYKISKDYSISYYENYNLLEKIRSKQGIGFNINDSCWNLDFKLESEIRPSSSTYKDGVDQKLITMNLLLKPLGGIKQKYKMENDN
>CP032097.1|AXX95101.1|1399427_1400078_+|putative-phosphoribosyltransferase
MNSDKVYFKNREVAAYRLLDVLPIDSMKLEDWTVISSSYGGFEIAKIIAKTLNGKFDIMFSEKIYAPNNEECEIAVVTEHEEVLIHEELVKSFNISLDYIYAKSKQVFEESIVKKVNRFRHGERIEKLEDKNVLIVDEGINTGLTMMACIKTAINLKAKSISVATPILPTASIPTIESIADDLYFIKKLDHFVEIDFYYDSLEELSFEDIEKINKG
>CP032097.1|AXX95102.1|1400084_1402259_+|polynucleotide-phosphorylase
MATVCEFELNGKQEIFEFEKVAKQANGSVLAKIGNAVVLATVVSEFDNPVSEDFTPLTVQYIEKTYAAAKLPGGFIKREGKPSDFETLTSRVIDRSLRPLFPKGYVYPTTITVMVLSADKDVDLQTLALNAANAALYTSNLPIKKSVCGVRVAKIENNLVINPTPAELENSVLDLYVAGSKDELLMIEMKTISSSELVEVDIEAFTKIHNSNEMNEDTLVEAIAFAQNALKEANLSYEKAFEEVSKEKVQVELIKFTIEESVINYVRDNFSNEIREAIKKLAKSERATQLKDVAKMISKNEYCITNELEFNTIYEAVSIVKREIVRAMIVNDKVRADGRGLKDVRPITIETNILPSTHSSCLFTRGETQALVIGTIAGPKDGQMYEVLTDKSTSMERFMVHYNFPGFSVGEAKPMFGVGRRELGHGNLAKKALEATIDDDYNETVRLVSEILESNGSSSMATVCGGSLALKAAGVPISDLVAGVAMGMVVEDGKYSILTDIMGLEDHDGDMDFKVAGTNKGITALQMDIKLGGIELNVLKEALLQAKEGREHILGLMNEAANEIVPSEALPLVEQFAIDPSKIMVIIGKAGATIKEIIEKFTVSIDLDRDSGTVKVSGENKQNVLDACEHIKTISNNAPSRKETPKNVDFEKLYQVDEVVTGKVERLVDFGAFILLPKGGEGLLHISKISKERVNNISDVLSVGQDIEVKVLKVKKDRIELSSN
>CP032097.1|AXX95103.1|1402426_1402795_+|chemotaxis-regulatory-protein
MAKLLIVDDSTMLRDMLNYALNEGGYTDVTEAVDGVDGLAKAKATDFDLIITDVNMPNMDGLTLIGELRKIPQYTKKPILVLTTERSDEMKAKGKAAGATGWIVKPFVPDQLLKAVNIVLSR
>CP032097.1|AXX95104.1|1402811_1404902_+|chemotaxis-sensory-histidine-kinase
MSFDISKYREMFLEEAVELFESADNVLLEAENNGTLTDEEMGQLFRDVHTLKGSGASVELALFAEFTHDVENLMDKLRNHKIEFIPEMAETLIDGLDVMKEILDLEVADKLDRDTFTQMTSSLLEEIRSYSNGTAVKKEVEPVKVEKIEKPKVEEKIEITTLDSDNFGFFDDDLNEQRDTKNKPYGIFADDDIDAVHENIGFYDDDLETISKNTKDSDFKISNDDKENFGFFDEMPNITPDSVMQTNDIEEKILPTVEKEEVVEKSAPVVRKSRAVTAEENEDAAGKKSVSNNNNSIRVNLDKIDLLMNNVGDLVITNAMLTQFSSTIDETKTRNSVLERLELLERHIRDMQDSIMSIRMVPMDSIYSKFPKVVRDISKKLGKKVEFKHYGDNVEIDKAMIEGLTDPLMHIIRNSLDHGIETPAEREKTGKPEVGSISISAEQANGQMIITIEDDGKGINSEKVAQKALEQGQIDENQYNTMTENEKALLIFGAGVSTADQITDISGRGVGMDVVKTNIHKLGGAIKLDTHLGEGTTITIMLPLTLAILDGLDIRVGNQKYILPLSSIVESLQPTSDMIKKIGDGTQDLLMLREEFIPVVKLHQLFGLEKSFDKLEDGMLIVVKSGNTKVALSIDEFLNQHQVVVKPLDKNFRSVQGIGAATVRGDGSIGLILDVVGIINAQIKIEKDMNAAKRAS
>CP032097.1|AXX95105.1|1404907_1405753_+|MCP-protein-methyltransferase
MAYTTQDVHNKVKKLLYSLTGITLSDNKDIMISNRIDKLKRNCKYSGDIMDLLNSIEQGNNVTEFINSFTTNKTHFFREDFHFVDLKDRVLPAFANSGTKINMYCSASSTGEEPYSMAMTVFKASEELGKNISASIIATDIDTNVLQYAANGIYRYSKSSKEFPSWIRPQNFFKRRIQKNLSGEEILIKVNDELKRMITFHVMNLSDPSYPFAKNQFDVIFCRNVLIYFSAEDQNSILKKLFKHLKIGGTLYLGHSENPQDLVHYVKRVGQNIFVKEKEIV

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Crispr_ID: CP032097_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032097_5

2212478-2214191

TypeIII

Consensus_repeat	Method
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	CRISPRCasFinder
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	CRT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	PILER-CR

23 spacers

cas2,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,WYL,csx1

The CRISPR arrays of CP032097_5

>merge|CP032097|5|2212478-2214191|CRISPRCasFinder,CRT,PILER-CR
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACATAAATTCTAAATTTTGCATTTCAATCCTTTTGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACATAGGTCTGCATTTTTTTGATTTTTTTTTATTTTCATTTTGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACACTTGCAGCGTGCTGAGTTAAGTTAATTGTTTTTGAGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACTTTTTAATGATTTTATGAAAATAGGTTTTCTATTTTGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACATTATTACAGTCTTAATTCCCCTTTTCCAAAAGTTAGGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACAAATTTCTCCTGCAAATTGTTTTTGAAATTCTAATAAGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACAATATACTCCTCATCCATTGTCCCATCATTTTTGTGAGGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACATCCGTGAAAATGAAACAATAGTTCTTTATCTTTTGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACAATTAGGGCATTTTTCTTCCATTTGCCAGATAAAAATTAGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACCATAACCTTTCGGCTACTGTATCTTCACCATATGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACATTAATGCTTCTCCCCATATTCCTACAGAAGAAGTTTGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACTCTTTTATTAAAGAAATAGTTTCTGTTAAAAAATCGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACAAATCTCCACTGCAACAATATTATTTTCTGCTTCGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACATCTTGTGCTTCTTCGTTAGCTGTTTTTATAGAGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACATTACTACAGAAACAGCCAAAAGAGGAAAAGAAACAGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACAACCAATTGCGATTCTTTTTTCATCTTCCGTTAAGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACAAGTTTGTGCAGCAGCAACTGGACTATCCCATGAGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACTGGTTTGGGTTATGACCTTGACCTTGGTTTGGGGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACGATCAATTAGATGTTCTTCAACAAATTCATCAAATAGTTGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACATTTGCAGAACCTATGTATAAGTCTGATTTTTTGTTGGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACAAATAATCGCTTTTGCTCTTAATTTAGGTAATTTATTTGAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGACGAATACAACTTTGCAGTTTCAGCATAAGTGATCGTGTTGAAAACCTCTCTCCAAGAGAGGTAGTTGTTTTGAGACACAATAGGTAATCTTTTTTCATAAGCAAACATTATGAAAACCTCTCTTCAAAGAAAGAAAAATTTAACGAAC

>CP032097|5|4|2212478-2214119|CRISPRCasFinder
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATAAATTCTAAATTTTGCATTTCAATCCTTTT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATAGGTCTGCATTTTTTTGATTTTTTTTTATTTTCATTTT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ACTTGCAGCGTGCTGAGTTAAGTTAATTGTTTTTGA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	TTTTTAATGATTTTATGAAAATAGGTTTTCTATTTT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATTATTACAGTCTTAATTCCCCTTTTCCAAAAGTTAG
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AAATTTCTCCTGCAAATTGTTTTTGAAATTCTAATAA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AATATACTCCTCATCCATTGTCCCATCATTTTTGTGAG
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATCCGTGAAAATGAAACAATAGTTCTTTATCTTTT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AATTAGGGCATTTTTCTTCCATTTGCCAGATAAAAATTA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	CATAACCTTTCGGCTACTGTATCTTCACCATAT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATTAATGCTTCTCCCCATATTCCTACAGAAGAAGTTT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	TCTTTTATTAAAGAAATAGTTTCTGTTAAAAAATC
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AAATCTCCACTGCAACAATATTATTTTCTGCTTC
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATCTTGTGCTTCTTCGTTAGCTGTTTTTATAGA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATTACTACAGAAACAGCCAAAAGAGGAAAAGAAACA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AACCAATTGCGATTCTTTTTTCATCTTCCGTTAA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AAGTTTGTGCAGCAGCAACTGGACTATCCCATGA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	TGGTTTGGGTTATGACCTTGACCTTGGTTTGGG
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	GATCAATTAGATGTTCTTCAACAAATTCATCAAATAGTT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATTTGCAGAACCTATGTATAAGTCTGATTTTTTGTTG
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AAATAATCGCTTTTGCTCTTAATTTAGGTAATTTATTT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	GAATACAACTTTGCAGTTTCAGCATAAGTGATCGTGTT
GAAAACCTCTCTCCAAGAGAGGTAGTTGTTTTGAGAC

>CP032097|5|1|2212478-2214191|CRT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATAAATTCTAAATTTTGCATTTCAATCCTTTT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATAGGTCTGCATTTTTTTGATTTTTTTTTATTTTCATTTT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ACTTGCAGCGTGCTGAGTTAAGTTAATTGTTTTTGA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	TTTTTAATGATTTTATGAAAATAGGTTTTCTATTTT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATTATTACAGTCTTAATTCCCCTTTTCCAAAAGTTAG
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AAATTTCTCCTGCAAATTGTTTTTGAAATTCTAATAA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AATATACTCCTCATCCATTGTCCCATCATTTTTGTGAG
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATCCGTGAAAATGAAACAATAGTTCTTTATCTTTT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AATTAGGGCATTTTTCTTCCATTTGCCAGATAAAAATTA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	CATAACCTTTCGGCTACTGTATCTTCACCATAT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATTAATGCTTCTCCCCATATTCCTACAGAAGAAGTTT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	TCTTTTATTAAAGAAATAGTTTCTGTTAAAAAATC
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AAATCTCCACTGCAACAATATTATTTTCTGCTTC
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATCTTGTGCTTCTTCGTTAGCTGTTTTTATAGA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATTACTACAGAAACAGCCAAAAGAGGAAAAGAAACA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AACCAATTGCGATTCTTTTTTCATCTTCCGTTAA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AAGTTTGTGCAGCAGCAACTGGACTATCCCATGA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	TGGTTTGGGTTATGACCTTGACCTTGGTTTGGG
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	GATCAATTAGATGTTCTTCAACAAATTCATCAAATAGTT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATTTGCAGAACCTATGTATAAGTCTGATTTTTTGTTG
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AAATAATCGCTTTTGCTCTTAATTTAGGTAATTTATTT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	GAATACAACTTTGCAGTTTCAGCATAAGTGATCGTGTT
GAAAACCTCTCTCCAAGAGAGGTAGTTGTTTTGAGAC	ACAATAGGTAATCTTTTTTCATAAGCAAACATTAT
GAAAACCTCTCTTCAAAGAAAGAAAAATTTAACGAAC

>CP032097|5|2|2212844-2214119|PILER-CR
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AAATTTCTCCTGCAAATTGTTTTTGAAATTCTAATAA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AATATACTCCTCATCCATTGTCCCATCATTTTTGTGAG
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATCCGTGAAAATGAAACAATAGTTCTTTATCTTTT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AATTAGGGCATTTTTCTTCCATTTGCCAGATAAAAATTA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	CATAACCTTTCGGCTACTGTATCTTCACCATAT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATTAATGCTTCTCCCCATATTCCTACAGAAGAAGTTT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	TCTTTTATTAAAGAAATAGTTTCTGTTAAAAAATC
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AAATCTCCACTGCAACAATATTATTTTCTGCTTC
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATCTTGTGCTTCTTCGTTAGCTGTTTTTATAGA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATTACTACAGAAACAGCCAAAAGAGGAAAAGAAACA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AACCAATTGCGATTCTTTTTTCATCTTCCGTTAA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AAGTTTGTGCAGCAGCAACTGGACTATCCCATGA
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	TGGTTTGGGTTATGACCTTGACCTTGGTTTGGG
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	GATCAATTAGATGTTCTTCAACAAATTCATCAAATAGTT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	ATTTGCAGAACCTATGTATAAGTCTGATTTTTTGTTG
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	AAATAATCGCTTTTGCTCTTAATTTAGGTAATTTATTT
GAAAACCTCTCTCCAAGAGAGGTAGTTATTTTGAGAC	GAATACAACTTTGCAGTTTCAGCATAAGTGATCGTGTT
GAAAACCTCTCTCCAAGAGAGGTAGTTGTTTTGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
CP032097.1\|AXX95874.1\|2208734_2209544_+\|CRISPR/Cas-system-associated-RAMP-protein-Cmr6,-type-III-B	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	gnl\|CDD\|213662
CP032097.1\|AXX95886.1\|2222383_2223199_-\|glycosyltransferase,-family-2	unknown	unknown	gnl\|CDD\|133038
CP032097.1\|AXX95885.1\|2221410_2222373_-\|glycosyltransferase,-family-4	unknown	unknown	gnl\|CDD\|133464
CP032097.1\|AXX95869.1\|2204100_2205234_+\|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	unknown
CP032097.1\|AXX95878.1\|2214256_2214430_+\|putative-membrane-protein	unknown	unknown	unknown
CP032097.1\|AXX95880.1\|2216903_2218094_-\|ATP-binding-protein-(AAA-domain)	unknown	unknown	gnl\|CDD\|224292
CP032097.1\|AXX95871.1\|2206567_2207548_+\|CRISPR/Cas-system-associated-RAMP-protein-Cmr3,-type-III-B	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	unknown
CP032097.1\|AXX95873.1\|2208368_2208725_+\|CRISPR/Cas-system-associated-protein-Cmr5,-type-III-B	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
CP032097.1\|AXX95872.1\|2207547_2208372_+\|CRISPR/Cas-system-associated-RAMP-protein-Cmr4,-type-III-B	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
CP032097.1\|AXX95887.1\|2223195_2224002_-\|alpha-1,2-fucosyltransferase	unknown	unknown	gnl\|CDD\|211387
CP032097.1\|AXX95870.1\|2205230_2206571_+\|CRISPR/Cas-system-associated-RAMP-protein-Cas10/Cmr2,-type-III-B	cas10	cls000742_cas10_CAS-III	gnl\|CDD\|187810
CP032097.1\|AXX95879.1\|2214483_2215569_+\|DUF1887-domain-containing-protein	csx1	pfam09002_csx1_CAS-III	gnl\|CDD\|312526
CP032097.1\|AXX95876.1\|2211787_2212063_+\|CRISPR/Cas-system-associated-endoribonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP032097.1\|AXX95882.1\|2220016_2220589_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
CP032097.1\|AXX95867.1\|2200771_2201695_+\|transcriptional-regulator-(WYL-domain)	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
CP032097.1\|AXX95883.1\|2220585_2220876_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
CP032097.1\|AXX95884.1\|2220872_2221355_-\|hypothetical-protein	unknown	unknown	unknown
CP032097.1\|AXX95881.1\|2218235_2220002_-\|NDP-sugar-epimerase,-putative-UDP-GlcNAc-inverting-4,6-dehydratase-FlaA1	unknown	unknown	gnl\|CDD\|224011
CP032097.1\|AXX95875.1\|2209556_2211788_+\|CRISPR/Cas-system-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|275209
CP032097.1\|AXX95868.1\|2201764_2204104_+\|putative-membrane-protein	unknown	unknown	gnl\|CDD\|223671

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
CP032097.1\|AXX95874.1\|2208734_2209544_+\|CRISPR/Cas-system-associated-RAMP-protein-Cmr6,-type-III-B	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	4.4e-33	109.4	2.3
CP032097.1\|AXX95870.1\|2205230_2206571_+\|CRISPR/Cas-system-associated-RAMP-protein-Cas10/Cmr2,-type-III-B	cas10	cls000742_cas10_CAS-III	3.1e-43	142.5	9.0
CP032097.1\|AXX95879.1\|2214483_2215569_+\|DUF1887-domain-containing-protein	csx1	pfam09002_csx1_CAS-III	3.3e-14	47.0	11.5
CP032097.1\|AXX95876.1\|2211787_2212063_+\|CRISPR/Cas-system-associated-endoribonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	6.4e-27	88.4	1.5
CP032097.1\|AXX95869.1\|2204100_2205234_+\|hypothetical-protein	cmr1gr7	mkCas0086_cmr1gr7_CAS-III-B	1.6e-77	256.1	24.4
CP032097.1\|AXX95867.1\|2200771_2201695_+\|transcriptional-regulator-(WYL-domain)	WYL	COG2378_WYL_CAS-I:CAS-III	4.8e-31	103.1	0.1
CP032097.1\|AXX95871.1\|2206567_2207548_+\|CRISPR/Cas-system-associated-RAMP-protein-Cmr3,-type-III-B	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	3.6e-11	38.0	0.1
CP032097.1\|AXX95875.1\|2209556_2211788_+\|CRISPR/Cas-system-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	3.7e-67	221.3	6.1
CP032097.1\|AXX95872.1\|2207547_2208372_+\|CRISPR/Cas-system-associated-RAMP-protein-Cmr4,-type-III-B	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	2.1e-48	160.0	0.0
CP032097.1\|AXX95873.1\|2208368_2208725_+\|CRISPR/Cas-system-associated-protein-Cmr5,-type-III-B	cmr5gr11	mkCas0098_cmr5gr11_CAS-III-B	6.9e-28	92.2	0.9

Protein	Function_ID	Function_description	E-value
CP032097.1\|AXX95874.1\|2208734_2209544_+\|CRISPR/Cas-system-associated-RAMP-protein-Cmr6,-type-III-B	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	3.92005e-28
CP032097.1\|AXX95886.1\|2222383_2223199_-\|glycosyltransferase,-family-2	gnl\|CDD\|133038	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.	3.57973e-84
CP032097.1\|AXX95885.1\|2221410_2222373_-\|glycosyltransferase,-family-4	gnl\|CDD\|133464	cd06854, GT_WbpL_WbcO_like, The members of this subfamily catalyze the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate (Und-P) molecule and N-acetylhexosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylhexosamine precursor. The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P transferases includes the WbcO protein from Yersinia enterocolitica and the WbpL protein from Pseudomonas aeruginosa. These transferases initiate LPS O-antigen biosynthesis. Similar to other GlcNAc/MurNAc-1-P transferase family members, WbpL is a highly hydrophobic protein possessing 11 predicted transmembrane segments.	6.73809e-78
CP032097.1\|AXX95880.1\|2216903_2218094_-\|ATP-binding-protein-(AAA-domain)	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	5.95467e-29
CP032097.1\|AXX95882.1\|2220016_2220589_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	9.85297e-81
CP032097.1\|AXX95873.1\|2208368_2208725_+\|CRISPR/Cas-system-associated-protein-Cmr5,-type-III-B	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	0.00114509
CP032097.1\|AXX95872.1\|2207547_2208372_+\|CRISPR/Cas-system-associated-RAMP-protein-Cmr4,-type-III-B	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.13095e-45
CP032097.1\|AXX95870.1\|2205230_2206571_+\|CRISPR/Cas-system-associated-RAMP-protein-Cas10/Cmr2,-type-III-B	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	9.78691e-22
CP032097.1\|AXX95879.1\|2214483_2215569_+\|DUF1887-domain-containing-protein	gnl\|CDD\|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	2.64406e-09
CP032097.1\|AXX95876.1\|2211787_2212063_+\|CRISPR/Cas-system-associated-endoribonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	6.25865e-26
CP032097.1\|AXX95887.1\|2223195_2224002_-\|alpha-1,2-fucosyltransferase	gnl\|CDD\|211387	cd11301, Fut1_Fut2_like, Alpha-1,2-fucosyltransferase. Alpha-1,2-fucosyltransferases (Fut1, Fut2) catalyze the transfer of alpha-L-fucose to the terminal beta-D-galactose residue of glycoconjugates via an alpha-1,2-linkage, generating carbohydrate structures that exhibit H-antigenicity for blood-group carbohydrates. These structures also act as ligands for morphogenesis, the adhesion of microbes, and metastasizing cancer cells. Fut1 is responsible for producing the H antigen on red blood cells. Fut2 is expressed in epithelia of secretory tissues, and individuals termed "secretors" have at least one functional copy of the gene; they secrete H antigen which is further processed into A and/or B antigens depending on the ABO genotype. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes.	1.61625e-33
CP032097.1\|AXX95867.1\|2200771_2201695_+\|transcriptional-regulator-(WYL-domain)	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	9.22955e-28
CP032097.1\|AXX95883.1\|2220585_2220876_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	6.85458e-07
CP032097.1\|AXX95881.1\|2218235_2220002_-\|NDP-sugar-epimerase,-putative-UDP-GlcNAc-inverting-4,6-dehydratase-FlaA1	gnl\|CDD\|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	0
CP032097.1\|AXX95875.1\|2209556_2211788_+\|CRISPR/Cas-system-associated-endonuclease-Cas1	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	2.99143e-67
CP032097.1\|AXX95868.1\|2201764_2204104_+\|putative-membrane-protein	gnl\|CDD\|223671	COG0598, CorA, Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism].	2.84077e-06

>CP032097.1|AXX95876.1|2211787_2212063_+|CRISPR/Cas-system-associated-endoribonuclease-Cas2
MNFIITYDIQNDKRRKKISDELEAFGIRVNYSVFECELNKTKLKRLRLKLEEIIDKKEDSLRFYHICQSCIPKSFEICDKADIFESQELFI
>CP032097.1|AXX95875.1|2209556_2211788_+|CRISPR/Cas-system-associated-endonuclease-Cas1
MFTSTLSHIFTLQNFRFAFDEISSNATGIDNMSYQEFKEDFSNQIKDLINSILSGIYSPEPLKKIEIQKEDSFETRPIALSSIKDKLVQRVLYKALNDYFDEQFSNKSYAYRKNKSTITAINRVSQFIQEGNIYILKTDIDNFFETINHEKLLMILDKQISDRSITRLISLFLQTGGFKNLDYHEHEDGVHQGDILSPLLSNIYLDLMDQWLEKNEILFVRYADDFVILNKNETQLKTIQENLEIFLSTLDLKLGNDKTYFSTIQDGFEFLGIHFKGKQKIVDNERFQKTLSKLHKLSKSKSSLVKYTKDLNAYLFAIKNYYLKIIEKNSTQYSLLEQHLIDSISYKVYICKQNKEIKTKKEFKIILSQIKLDTIFDIEIIQDKIELIIAKAYEQYLSNKSYKDSKTKIDKKKNEYAKKFANDSTLHINSFGLNLGISKNKFVVKEYGKVKMTFPFEKISRIILEGEGISLSTDVIKKSVENNITIDFLNKNAISYASLITYKAATTQNIQKQSMILNSKIHLHLAKAFIQGKAKNQINYIKYLNKYHKLLESNILNMEKLHKNIKKASTIDEIMGYEGSISVVYWNSIKLILEVPFEARVTFGAKDIVNSSLNYAYAILYGKVQHCLVHAGLSLNISFLHAIDEQKPTLVYDMIEEFRTFIVDRTIFSMLNKNEPIKLDKDGLLTKNSKQLISKNIKEKLGSYTMWKKESIKIENIIQTQCHKLAKSIDENKANYKPFIGKY
>CP032097.1|AXX95874.1|2208734_2209544_+|CRISPR/Cas-system-associated-RAMP-protein-Cmr6,-type-III-B
MSFANAFANMNKSKKEIFDNNKSSQQPTPSVKKEKEQKEFKPKANIGWLFYKDYFKDLNYSKLDDSKNEDIINKKVNNIINQKFTMQKSKDLGNTKFELSIIYPGLLIGSGNTHELPDIKGQAILGFHFDYTSGLPEITGSSIKGILRSAFNNEKYIKEILDKDDTLNIKKLESEIFDNNDIFFDAIIIKSGKNNKILEDDFITPHKEATKNPIPLRFIKVLPEVTFEFQFLLQDGIIKKEQKLNLFKQIILDFGLGAKTNVGYGKFQE
>CP032097.1|AXX95873.1|2208368_2208725_+|CRISPR/Cas-system-associated-protein-Cmr5,-type-III-B
MSKKRIESYIPKAIELLTKEFPEGKIASSYNGYISSFGASIIQSGLKPTLAVFENTNASTKEDKSYLTKLILKLLPNTQGNSLLKFVLANKQKEESLKEEILDIAVALKLSIRTFKLV
>CP032097.1|AXX95872.1|2207547_2208372_+|CRISPR/Cas-system-associated-RAMP-protein-Cmr4,-type-III-B
MQTNLYKITTLTNLHVGSGDANFDIIDNQVQRDSITKLPNINSSSLKGAFREHFTQFDANGMINYIFGPESTCDDNHQTGAYSFFEAKLLTRPVRSNVKYFFNATSPSIISEFLQNCTLFKIELDSELKNTLQKLSELKPNKPLIFEDIKDVILEDLEAQFQQFDISKLKNFLGKDLALFSDEDLKNLALPVLARNKLDNGESKNLWYEEIVPKETQFYFFIIKPDNLDAQDKIQKIDGFERRFDNEEIIQIGANKSIGYGFCKVTQIKNGDVK
>CP032097.1|AXX95871.1|2206567_2207548_+|CRISPR/Cas-system-associated-RAMP-protein-Cmr3,-type-III-B
MKYKITLKPLQPFLFGGDNTYGKIGDKENGTYITKSRLFPQQSAILGMLKKEIMTQQGLLTKKIKGEWVDKNKTTTAHEFVGLEKFNIFQNTPQNFGKIKKISPIFIEQNNQIIIKKANIKSFPIEKNDNNFFLKNFTSKFDIFDNFETLDGNKNYKTTDIFKEINQTLNQKNASENSLYKKTSYMLEKGFSFVFFLECDCEIKGSIITLGADKSSFIMEVESSTQNLDIKTSHLILLSDSYISLPLEEHCDFAITSEISYQNLTNIKGIQKNKKTNKNSFSKSKKVYLYEKGSVIIGAKQSLIDNINNPNLQQIGYNTYTLGENK
>CP032097.1|AXX95870.1|2205230_2206571_+|CRISPR/Cas-system-associated-RAMP-protein-Cas10/Cmr2,-type-III-B
MKYIALTIGPIYKTLKNSKKTRELWGGSYIFSYIMKKIIEKFKDREFVTPYVDENVFKSGKEVGLFHDRFIFRANTNDTKQSVQKIIDKVLQELSNNTSLSFEFLKAYFQINHLEIELNDDTNPILEISPYLDSLEQFYRINHYKENELSKMLKNNNSFLIKDAFDVKRKDFPSLPEIALQDFSDLWEKDDAKAFEDKRLKPYHKYIAIIHADGDNMSEIIKDTSKLQDTSKKLFDFCIKSHELIKTFGGYTIFAGGDDLLFFAPIVSKNKTIFELLDEISNEFDDKFKPKATLSFGVSITYYKYPLYEALENSRNLLFSKAKQLPKNNIAYEIIKHSGQTFGGILYKGSNSYKKFLSFVSIEKSLNDNFLHSLHHKINLHKKTLETIITDNNKLENFFKNYFNEAEHNEYKDFFVKLIDYMMSEQNIDNIYATLRFIKFIKGDKE
>CP032097.1|AXX95869.1|2204100_2205234_+|hypothetical-protein
MSNFKVKFTLKQHTPIIHFQSDQMGATLRATELKPKFDRFLLENVKDLPFRKNANGEKSLDYKIKIIAHDNIIETIEKINPKNDKEIPDPLFFGNMGDNIVRKKFAQAKELEIEFFSFSSEIKKAIEEKFEAFLANTNFGTRQNKGYGCFYLDNPFDKTLIPYEVYSFNSNNWKQDIKLLYSFLRQGINYPKGRDLPSRFYSKPAIFTYALTKNWIWDKKAIKQHFFPNDLKDQQKKYDLNSPVNANGQNTFLLRDLFGLSSEQSWMNYRASIKKEHEKEQKQEEIERFKSPLTFKIINNTVYFWADKSVEKILDKTFKISARGTPLNLKTPKIFCFDEFFEYVKSIDLSKHIDSKFHKEPEFNSLKRILDSIKASK
>CP032097.1|AXX95868.1|2201764_2204104_+|putative-membrane-protein
MNKRVFLLGGKDLEMLEIKKILSEKNETYENKDLSWGAKLSDYRNELEKYNTDDITIYGIELEEDIKAPKNYIEIDHHGKNEDNPSSLEQVAKILNIELSKEQKLIAANDSRYINGMQNLCATKEQIDEIRKRDKEAQNITFEDEKLAKESFETACNNNSNLICSKTSKFTVVSDLAYYKFDNYVIYNNEKILFYGYKKSNILEFLLSQNIDESNYYYGGGDFGFVGIKDRILSEDKINNLLEEFKKFDKKEELYSYHTFMFPFTFKDHFKKTKNWEYKPFEILEQKDFNEYVYFYKHIQDAIYNKNNKNSEKWISKYYKYKFQKGKYSINCKKGVFELELDGLSLRIFNTDVGILSFNLKNTKYSDKNSILAINDFGRRIYPQFLGEKFTGNTKNAILSNCITLELDDKIINEDFTKFNTIDSFKELKKLNLLPSFILELIEDNFSKDEENLTTIRPIIDDRMFIISLYMNDALITKLQNYKECSNQYEYETNDSWYKYIFIDGDEKTCQSKHMTKKLISESTYDRWIEWGTLFGISRYSFVSITGSWFGKNRLLPHIQTMYFQIFTLLLAYRATIIKFSDDIQNVTNETTQNLEKLSKDTEEIYEKYLSFLNKLYFKEITAQDQGIELYNQAMKVMDIEKYMSDLDHEITQLHTYVDMRKEKERNDKLEFISKIGAILLPPSLLAGLFGMNVLILDETFWNQSVSLLLIVLSGIIGFLFTFKKMKMLKIIIPTILMFIILLTIFGIYSDKKDLEKPQEIEIKNQPIEVILSKEKGEK
>CP032097.1|AXX95867.1|2200771_2201695_+|transcriptional-regulator-(WYL-domain)
MKHDYDKTVTRLITILSKFSQNEIVNPKELAQEFNVSVRTIQKDLKDKLMPNFPIYMYKKGEYRLSEGASITKSHLTNDEMIILSLALSKFKDVSDFDITTDNLLKKLLKPNLNNPYFMKYDDIEDLDIDSKIVQTIEDAIEYSNIIEVNTKNSSKIVEAYKMTNYGGIWYLFARDTKDNKIKTFMISKIKSVNLTSKKYNFPKHAIEQMLDKAHSPYYQDGNTYDVKVKVYSEIAHFFEQKEFLQSQEIEKKLEDGSLIINFEISHDEDIDNIIKAWLPHIEIIEPLRFREKLKNELKEYLEKIQF
>CP032097.1|AXX95878.1|2214256_2214430_+|putative-membrane-protein
MKIFLNFAIFIILIYSSIKLHKYLLKKYNSSPFTLFNVVLFFGSFFITSFLIYFFEK
>CP032097.1|AXX95879.1|2214483_2215569_+|DUF1887-domain-containing-protein
MILISLLGVHDSSIFPILFEFKDKIKKHIIIHDDSKYEKTIIKKVINSEEEFKNFYSLNYQTFSIQIDEDSYDSIISCYKKIEIYSNNDFKNIYFNATDGLVSSSIILSDKLLDNGASVIAYDIFDNGFNLVTKNSMEKRKITQNIDIRTHLMLKGYKIVFTGAKIEAVKRKNHILKICENIDLLHEFANKIQNQSIEKINGFDGLKSLISQIDKLDDKPFIQGGIFEEYIYWLIEDNFDFDQVMFNVKVEFEENVFNEFDVLMIKDNHLHVIECKLKKFVEGENFVYKLDSVVDYLDDDGKGMILVIGGENDKITTKGNLKRAFSLGTKARARSADILIHHAKTFNKNEFLDNIQKHFFS
>CP032097.1|AXX95880.1|2216903_2218094_-|ATP-binding-protein-(AAA-domain)
MDLATLQKISIQILSREVPTYKRYLYSKIDFNSKLIGIKGARGAGKSTILLQYAKSLDYPISKILYVSCDHPAMSGESLYDIAEAFYARGGKLFIIDEIHKNEHFSKDLKAIYDVFDLQVLFSGSSALQIENSLADLSRRAVIHTLGVLSLREFCELQTNETFQSYSLEEILQNHEDIAFQILKHIRPVEQFNNYLKYGCYPFYQESLSDYSMKLLEVINLTIDSDLCGIYNIEPSKLDKLKKIIYMLCSTKPYELNISKLSSAVGTSWPTLQKYLERMDAGSLINIVRGGEGMRAINKPDKLLLDNPNLFVVACGNGDIGSIRESFFVSQLGLHNQVHYHDKGDFIINDNYVFEIGGASKNAAQLKGNKNGYVVNDDVEIGFDNKIPLWLFGFLY
>CP032097.1|AXX95881.1|2218235_2220002_-|NDP-sugar-epimerase,-putative-UDP-GlcNAc-inverting-4,6-dehydratase-FlaA1
MLKASPLKRISFFLLSDIIISLFTLYFAYNLRFNFQIPSNFIDNFFSIFIILFSMKILVFLYFRLYRTAWRFFSLHEVKKILLAHIIVYTIFFIIFLIFKENMQPLARSIIIIDFMLSLVFITLLRLSKRIILESAGSTKYKNTLIIGANSTVKNLFCDKKNFHYTPVAIIDENKILKNTYIFDLRVYDFEDLKKVVKTKSIEAAIISKDYSQKELIAIYEKLNALNILDIKIINTLSSNDKKELKDIGVEDLLARHPKDLDKNQIENFIKDKVVLITGAGGSIGSEISRQCKAYGAKQLILLDHSEFNLYSIMEELKDENVIPVMQTVRKTEFLERTFAKYKPQIVIHAAAYKHVPLVEHNILEGISNNIIGTKNCIDLSIKYEVEKFVLISTDKAVRPTNVMGTTKRVCELYAQNVDSKNTEIVAVRFGNVLGSSGSVIPKFKAQIEAGGPITVTHPDITRYFMLIPEACELVLQAASIGKGGEIFILDMGEPIKIVDLAKKMIELSGRNEINIEFCGLRPGEKLYEELLINDSDQKTKYESITVASSTNFDINKLNQKIEELLVCEDKIAKLKEIVPEFNHQLNL
>CP032097.1|AXX95882.1|2220016_2220589_-|dTDP-4-dehydrorhamnose-3,5-epimerase
MKYLRQGIPEIIVCEPIIHFDDRGFVYEAFKKESFENFLGFNVDFCQDNISFSKHGVIRGLHTNTLEFAQSKLVTVLQGKILDVAVDFRVGSPTFGKYISIELSSENKKQLFIPRGFLHGFSVLSEDAIVNIKIDRYFAPDQSIGVKYDDEYLNIDWKIPKECVILSSADKKLLNFNDISSPFDYNSKLY
>CP032097.1|AXX95883.1|2220585_2220876_-|nucleotidyltransferase-domain-containing-protein
MRLEKIIINKIKEAICDSFGNVNVYLFGSRIDDTKKGGDIDLAIDIDLDSLEFRKKKIKFLTNLFKKDFHLKIDVVNYNTKDILLKNQIEKNAVLL
>CP032097.1|AXX95884.1|2220872_2221355_-|hypothetical-protein
MRESDTKQILEKRFEKLSKHYEALKDYKLLIDKILVNKNIYDQFIFNTLKPEEKAILDAYLKRFSSIQDFLGAKIFSLLLDVAGINSSKMSEVLYYIEKEEIIDSLESWIELREVRNELEHDYPEELEEALIDLKFCIDSFEKLESYYFNSLKFANKYLK
>CP032097.1|AXX95885.1|2221410_2222373_-|glycosyltransferase,-family-4
MIYIILLIISFFLTYVIKNYMIKKSLVATVNERSSHTIPIPHGGGIAISITWFIGLFYLFFINQIEQNLFFALLCGSVISIISFFDDIYELSPKLRLIIQAFVAVLGLYFLGGFETLTFGIFDISSLILTNIFAFFMIIWFVNLYNFLDGINGYAGSEALFLALAGFVLFGGNHFLVLAVATIGFLYWNWNKAKIFMGDVGSTLLGYNIAIFTIYYANQESTNFWVWIILFGVYWFDATLTLIRRKLNKEKLSQAHKKHAYQRLTQAGWSHYKVTNYSIGLNLILFLIVYFVSNIFVAFVLSMILLILSMKFVDKKKKFE
>CP032097.1|AXX95886.1|2222383_2223199_-|glycosyltransferase,-family-2
MNKFSVLMSIYYKENANYFNRAMVSIWDEQILKPNEIVLVLDGKLTEELMQAIFKWKNKLNEIMKIVPLENNMGLGDALNVGLKECTNELVARMDTDDISLPTRFLEQIEIFNKNNIDLCSSWIDEFDNDENKIISSRKVPEYNEDIIKFSKMRNPINHPAVMFKKQSVIDAGNYKKMYSFEDYYLWIRMVMNNSKVYNIQKSLVKMRAGYNQLERRRGWKYLIYEFNFWTSLYNVKFINFIELLKNLSLKLLIRLMPRKIIKEIYKIIRD
>CP032097.1|AXX95887.1|2223195_2224002_-|alpha-1,2-fucosyltransferase
MILVRLAGGLGNQIFQLSAALLLAKKIGVNNISIDLSGLQKYEAKHKNELVYFFDFKKLQINYIRNRIVDFRIPKIFPLKVPFYPFISDKNFQEALKNPNKQFMILDGYFQDCLIQEDFDKEIEILKDFFLPTKYEQDDQSCIIHIRGGDFVKLGWNVISPKEYYINAINIMKDEYKKNKFKVVTDDKKYANTVLEQLDINYEFIGNSIYDDFYLIGKYKYRILSSSTFSMWASALANNENSIVISPEYWTPNNLRKIFIPNERRIKF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP032097_5	5.1\|2212515\|32\|CP032097\|CRISPRCasFinder,CRT	2212515-2212546	32	NZ_CP033579	Vibrio mediterranei strain 117-T6 plasmid unnamed, complete sequence	104666-104697	8	0.75
CP032097_5	5.13\|2213394\|34\|CP032097\|CRISPRCasFinder,CRT,PILER-CR	2213394-2213427	34	AP013552	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C23B-MedDCM-OCT-S39-C49, * SEQUENCING IN PROGRESS *, 7 ordered pieces	10054-10087	8	0.765
CP032097_5	5.13\|2213394\|34\|CP032097\|CRISPRCasFinder,CRT,PILER-CR	2213394-2213427	34	AP014858	Vibrio phage RYC DNA, complete sequence	15007-15040	8	0.765
CP032097_5	5.16\|2213608\|34\|CP032097\|CRISPRCasFinder,CRT,PILER-CR	2213608-2213641	34	NZ_CP026329	Acidithiobacillus caldus strain MTH-04 plasmid p1, complete sequence	160481-160514	8	0.765
CP032097_5	5.12\|2213322\|35\|CP032097\|CRISPRCasFinder,CRT,PILER-CR	2213322-2213356	35	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	209530-209564	9	0.743
CP032097_5	5.16\|2213608\|34\|CP032097\|CRISPRCasFinder,CRT,PILER-CR	2213608-2213641	34	NZ_CP009921	Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid pBMV_2, complete sequence	159143-159176	9	0.735
CP032097_5	5.16\|2213608\|34\|CP032097\|CRISPRCasFinder,CRT,PILER-CR	2213608-2213641	34	NZ_CP035095	Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid unnamed1, complete sequence	16528-16561	9	0.735
CP032097_5	5.21\|2213970\|38\|CP032097\|CRISPRCasFinder,CRT,PILER-CR	2213970-2214007	38	AP014051	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12B-MedDCM-OCT-S26-C131, * SEQUENCING IN PROGRESS *	996-1033	9	0.763
CP032097_5	5.21\|2213970\|38\|CP032097\|CRISPRCasFinder,CRT,PILER-CR	2213970-2214007	38	AP014054	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12B-MedDCM-OCT-S33-C14, * SEQUENCING IN PROGRESS *	983-1020	9	0.763
CP032097_5	5.21\|2213970\|38\|CP032097\|CRISPRCasFinder,CRT,PILER-CR	2213970-2214007	38	AP014053	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12B-MedDCM-OCT-S29-C16, * SEQUENCING IN PROGRESS *	995-1032	9	0.763
CP032097_5	5.21\|2213970\|38\|CP032097\|CRISPRCasFinder,CRT,PILER-CR	2213970-2214007	38	AP014060	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12B-MedDCM-OCT-S45-C20, * SEQUENCING IN PROGRESS *	983-1020	9	0.763
CP032097_5	5.21\|2213970\|38\|CP032097\|CRISPRCasFinder,CRT,PILER-CR	2213970-2214007	38	AP014050	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12A-MedDCM-OCT-S36-C113, * SEQUENCING IN PROGRESS *	19894-19931	9	0.763
CP032097_5	5.21\|2213970\|38\|CP032097\|CRISPRCasFinder,CRT,PILER-CR	2213970-2214007	38	AP014056	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12B-MedDCM-OCT-S41-C215, * SEQUENCING IN PROGRESS *	7297-7334	9	0.763
CP032097_5	5.21\|2213970\|38\|CP032097\|CRISPRCasFinder,CRT,PILER-CR	2213970-2214007	38	AP014049	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12A-MedDCM-OCT-S34-C33, * SEQUENCING IN PROGRESS *	36578-36615	9	0.763
CP032097_5	5.21\|2213970\|38\|CP032097\|CRISPRCasFinder,CRT,PILER-CR	2213970-2214007	38	AP014052	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12B-MedDCM-OCT-S27-C13, * SEQUENCING IN PROGRESS *	38671-38708	9	0.763
CP032097_5	5.21\|2213970\|38\|CP032097\|CRISPRCasFinder,CRT,PILER-CR	2213970-2214007	38	AP014058	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12B-MedDCM-OCT-S42-C22, * SEQUENCING IN PROGRESS *	38664-38701	9	0.763
CP032097_5	5.1\|2212515\|32\|CP032097\|CRISPRCasFinder,CRT	2212515-2212546	32	NZ_CP050070	Klebsiella aerogenes strain 035 plasmid p35_C, complete sequence	39819-39850	10	0.688
CP032097_5	5.1\|2212515\|32\|CP032097\|CRISPRCasFinder,CRT	2212515-2212546	32	NZ_CP040996	Klebsiella pneumoniae strain FDAARGOS_775 plasmid unnamed4	1086-1117	10	0.688
CP032097_5	5.1\|2212515\|32\|CP032097\|CRISPRCasFinder,CRT	2212515-2212546	32	CP038509	Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219b	1068-1099	10	0.688
CP032097_5	5.1\|2212515\|32\|CP032097\|CRISPRCasFinder,CRT	2212515-2212546	32	NZ_CP026209	Escherichia coli strain ECONIH5 plasmid unnamed, complete sequence	1605-1636	10	0.688
CP032097_5	5.6\|2212881\|37\|CP032097\|CRISPRCasFinder,CRT,PILER-CR	2212881-2212917	37	AP014366	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S41-C63, * SEQUENCING IN PROGRESS *	12142-12178	10	0.73
CP032097_5	5.12\|2213322\|35\|CP032097\|CRISPRCasFinder,CRT,PILER-CR	2213322-2213356	35	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	164253-164287	10	0.714
CP032097_5	5.2\|2212584\|40\|CP032097\|CRISPRCasFinder,CRT	2212584-2212623	40	AP013612	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26A-MedDCM-OCT-S44-C248, * SEQUENCING IN PROGRESS *	2882-2921	11	0.725
CP032097_5	5.2\|2212584\|40\|CP032097\|CRISPRCasFinder,CRT	2212584-2212623	40	AP013613	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26A-MedDCM-OCT-S46-C220, * SEQUENCING IN PROGRESS *	6874-6913	11	0.725

1. spacer 5.1|2212515|32|CP032097|CRISPRCasFinder,CRT matches to NZ_CP033579 (Vibrio mediterranei strain 117-T6 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ataaattctaaattttgcatttcaatcctttt	CRISPR spacer
caaaattctaaattttgtatttcaaccagagt	Protospacer
  ***************.*******.*    *

2. spacer 5.13|2213394|34|CP032097|CRISPRCasFinder,CRT,PILER-CR matches to AP013552 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C23B-MedDCM-OCT-S39-C49, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces) position: , mismatch: 8, identity: 0.765

----aaatctccactgcaacaatattattttctgcttc	CRISPR spacer
tttgaaa----caatacaacaatattattttctgctga	Protospacer
    ***    ** *.********************

3. spacer 5.13|2213394|34|CP032097|CRISPRCasFinder,CRT,PILER-CR matches to AP014858 (Vibrio phage RYC DNA, complete sequence) position: , mismatch: 8, identity: 0.765

aaatctccactgcaacaatattattttctgcttc	CRISPR spacer
taaatgctagtgcatcaatattatgttctgcttc	Protospacer
 ** . *.* **** ********* *********

4. spacer 5.16|2213608|34|CP032097|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026329 (Acidithiobacillus caldus strain MTH-04 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.765

aaccaattgcgattcttttttcatcttccgttaa-	CRISPR spacer
tgataattgcgattattttttcatcgt-cgttatt	Protospacer
 . .********** ********** * *****

5. spacer 5.12|2213322|35|CP032097|CRISPRCasFinder,CRT,PILER-CR matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 9, identity: 0.743

tcttttattaaagaaatagtttctgttaaaaaatc	CRISPR spacer
gaatttattatagaaatagtttcttttaaattttt	Protospacer
   ******* ************* *****   *.

6. spacer 5.16|2213608|34|CP032097|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009921 (Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid pBMV_2, complete sequence) position: , mismatch: 9, identity: 0.735

aaccaattgcgattcttttttcatcttccgttaa	CRISPR spacer
tagtaattgctattcttttttcattttcataaaa	Protospacer
 * .****** *************.***    **

7. spacer 5.16|2213608|34|CP032097|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035095 (Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

aaccaattgcgattcttttttcatcttccgttaa	CRISPR spacer
tagtaattgctattcttttttcattttcataaaa	Protospacer
 * .****** *************.***    **

8. spacer 5.21|2213970|38|CP032097|CRISPRCasFinder,CRT,PILER-CR matches to AP014051 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12B-MedDCM-OCT-S26-C131, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.763

aaataatcgcttttgctcttaatttaggtaatttattt	CRISPR spacer
tacttttatcttttgctctttttttaggtaatttatct	Protospacer
 * *  *  ***********  **************.*

9. spacer 5.21|2213970|38|CP032097|CRISPRCasFinder,CRT,PILER-CR matches to AP014054 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12B-MedDCM-OCT-S33-C14, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.763

aaataatcgcttttgctcttaatttaggtaatttattt	CRISPR spacer
tacttttatcttttgctctttttttaggtaatttatct	Protospacer
 * *  *  ***********  **************.*

10. spacer 5.21|2213970|38|CP032097|CRISPRCasFinder,CRT,PILER-CR matches to AP014053 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12B-MedDCM-OCT-S29-C16, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.763

aaataatcgcttttgctcttaatttaggtaatttattt	CRISPR spacer
tacttttatcttttgctctttttttaggtaatttatct	Protospacer
 * *  *  ***********  **************.*

11. spacer 5.21|2213970|38|CP032097|CRISPRCasFinder,CRT,PILER-CR matches to AP014060 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12B-MedDCM-OCT-S45-C20, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.763

aaataatcgcttttgctcttaatttaggtaatttattt	CRISPR spacer
tacttttatcttttgctctttttttaggtaatttatct	Protospacer
 * *  *  ***********  **************.*

12. spacer 5.21|2213970|38|CP032097|CRISPRCasFinder,CRT,PILER-CR matches to AP014050 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12A-MedDCM-OCT-S36-C113, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.763

aaataatcgcttttgctcttaatttaggtaatttattt	CRISPR spacer
tacttttatcttttgctctttttttaggtaatttatct	Protospacer
 * *  *  ***********  **************.*

13. spacer 5.21|2213970|38|CP032097|CRISPRCasFinder,CRT,PILER-CR matches to AP014056 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12B-MedDCM-OCT-S41-C215, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.763

aaataatcgcttttgctcttaatttaggtaatttattt	CRISPR spacer
tacttttatcttttgctctttttttaggtaatttatct	Protospacer
 * *  *  ***********  **************.*

14. spacer 5.21|2213970|38|CP032097|CRISPRCasFinder,CRT,PILER-CR matches to AP014049 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12A-MedDCM-OCT-S34-C33, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.763

aaataatcgcttttgctcttaatttaggtaatttattt	CRISPR spacer
tacttttatcttttgctctttttttaggtaatttatct	Protospacer
 * *  *  ***********  **************.*

15. spacer 5.21|2213970|38|CP032097|CRISPRCasFinder,CRT,PILER-CR matches to AP014052 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12B-MedDCM-OCT-S27-C13, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.763

aaataatcgcttttgctcttaatttaggtaatttattt	CRISPR spacer
tacttttatcttttgctctttttttaggtaatttatct	Protospacer
 * *  *  ***********  **************.*

16. spacer 5.21|2213970|38|CP032097|CRISPRCasFinder,CRT,PILER-CR matches to AP014058 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12B-MedDCM-OCT-S42-C22, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.763

aaataatcgcttttgctcttaatttaggtaatttattt	CRISPR spacer
tacttttatcttttgctctttttttaggtaatttatct	Protospacer
 * *  *  ***********  **************.*

17. spacer 5.1|2212515|32|CP032097|CRISPRCasFinder,CRT matches to NZ_CP050070 (Klebsiella aerogenes strain 035 plasmid p35_C, complete sequence) position: , mismatch: 10, identity: 0.688

ataaattctaaattttgcatttcaatcctttt	CRISPR spacer
gaaaaatctaaatttttcatttcaagaataaa	Protospacer
. *** ********** ********   *

18. spacer 5.1|2212515|32|CP032097|CRISPRCasFinder,CRT matches to NZ_CP040996 (Klebsiella pneumoniae strain FDAARGOS_775 plasmid unnamed4) position: , mismatch: 10, identity: 0.688

ataaattctaaattttgcatttcaatcctttt	CRISPR spacer
gaaaaatctaaatttttcatttcaagaataaa	Protospacer
. *** ********** ********   *

19. spacer 5.1|2212515|32|CP032097|CRISPRCasFinder,CRT matches to CP038509 (Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219b) position: , mismatch: 10, identity: 0.688

ataaattctaaattttgcatttcaatcctttt	CRISPR spacer
gaaaaatctaaatttttcatttcaagaataaa	Protospacer
. *** ********** ********   *

20. spacer 5.1|2212515|32|CP032097|CRISPRCasFinder,CRT matches to NZ_CP026209 (Escherichia coli strain ECONIH5 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ataaattctaaattttgcatttcaatcctttt	CRISPR spacer
gaaaaatctaaatttttcatttcaagaataaa	Protospacer
. *** ********** ********   *

21. spacer 5.6|2212881|37|CP032097|CRISPRCasFinder,CRT,PILER-CR matches to AP014366 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S41-C63, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.73

aaatttctcctgcaaattgtttttgaaattctaataa	CRISPR spacer
ctaaatgttctgcaaattgtttttgagatgctaattg	Protospacer
  *  * *.*****************.** ***** .

22. spacer 5.12|2213322|35|CP032097|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 10, identity: 0.714

tcttttattaaagaaatagtttctgttaaaaaatc	CRISPR spacer
gaatttattaaggaaatagtttctgataacttctt	Protospacer
   ********.************* ***    *.

23. spacer 5.2|2212584|40|CP032097|CRISPRCasFinder,CRT matches to AP013612 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26A-MedDCM-OCT-S44-C248, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 11, identity: 0.725

ataggtctgcatttttttgatttttttttattttcatttt	CRISPR spacer
ttttttataagattttttgttttttttttattttcttttt	Protospacer
 *   * *. . ******* *************** ****

24. spacer 5.2|2212584|40|CP032097|CRISPRCasFinder,CRT matches to AP013613 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26A-MedDCM-OCT-S46-C220, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 11, identity: 0.725

ataggtctgcatttttttgatttttttttattttcatttt	CRISPR spacer
ttttttataagattttttgttttttttttattttcttttt	Protospacer
 *   * *. . ******* *************** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1205002 : 1277157

Shigella_phage(20.0%)

integrase,transposase

attL 1227178:1227194|attR 1286612:1286628

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX94915.1\|1205002_1207087_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	9.9e-93	32.6
AXX94916.1\|1207092_1207422_+	UPF0060 domain-containing membrane protein	A0A2H4JF35	uncultured_Caudovirales_phage	3.3e-19	53.1
AXX94917.1\|1207477_1207822_+	putative membrane protein	NA	NA	NA	NA
AXX94918.1\|1207862_1208411_-	resolvase	A0A286S1P7	Klebsiella_phage	8.8e-57	60.8
AXX94919.1\|1208420_1208756_-	toxin-antitoxin system, toxin component, MazF/PemK family	NA	NA	NA	NA
AXX94920.1\|1208742_1208991_-	hypothetical protein	NA	NA	NA	NA
AXX94921.1\|1209224_1209554_+	hypothetical protein	NA	NA	NA	NA
AXX94922.1\|1209730_1210558_-\|transposase	IS3 family transposase orfB	U5P429	Shigella_phage	2.5e-71	51.5
AXX94923.1\|1210614_1210899_-\|transposase	IS3 family transposase orfA	U5P4I9	Shigella_phage	2.6e-12	54.2
AXX94924.1\|1210991_1211693_+	short-chain dehydrogenase/reductase	NA	NA	NA	NA
AXX94925.1\|1211931_1212297_-	putative toxin-antitoxin system antitoxin component	A0A0P0ZCT8	Stx2-converting_phage	1.5e-20	48.7
AXX94926.1\|1212299_1212593_-	toxin-antitoxin system, toxin component, RelE/ParE family	A0A0P0ZE17	Stx2-converting_phage	4.7e-17	46.3
AXX94927.1\|1212641_1213925_-\|integrase	site-specific tyrosine recombinase, phage integrase family (INT_P4_C, DUF4102 domains)	B7SYF8	Stenotrophomonas_phage	9.6e-46	32.1
AXX94928.1\|1214247_1214526_-	DNA-binding protein HU	A4JWM7	Burkholderia_virus	2.7e-14	49.4
AXX94929.1\|1214647_1215226_-	putative aldolase	NA	NA	NA	NA
AXX94930.1\|1215287_1216190_+	16S rRNA m4C1402 methyltransferase	NA	NA	NA	NA
AXX94931.1\|1216182_1216488_+	hypothetical protein	NA	NA	NA	NA
AXX94932.1\|1216465_1219549_+	RND family efflux system, inner membrane transporter, AcrB family	S5VTK5	Leptospira_phage	2.1e-51	24.0
AXX94933.1\|1219576_1220851_-	NlpC/P60 family lipoprotein (SH3b1, SH3b2 type SH3 domains)	NA	NA	NA	NA
AXX94934.1\|1220968_1221367_+	hypothetical protein	NA	NA	NA	NA
AXX94935.1\|1221398_1221677_-	periplasmic monoheme cytochrome c553	NA	NA	NA	NA
AXX94936.1\|1221792_1223364_-	fatty acid CoA ligase	A0A2H4PQU7	Staphylococcus_phage	2.1e-18	24.2
AXX94937.1\|1223376_1224561_-	GlmL/MutL family protein	NA	NA	NA	NA
AXX94938.1\|1224557_1225922_-	coenzyme B12-dependent glutamate mutase GlmES, E (epsilon) subunit	NA	NA	NA	NA
AXX94939.1\|1225918_1226326_-	coenzyme B12-dependent glutamate mutase GlmES, S (sigma) subunit	NA	NA	NA	NA
AXX94940.1\|1226418_1226709_-	copper chaperone	NA	NA	NA	NA
AXX94941.1\|1226721_1227669_-	malate dehydrogenase, NAD-dependent	NA	NA	NA	NA
1227178:1227194	attL	NA	NA	NA	NA
AXX94942.1\|1227768_1229961_-	isocitrate dehydrogenase, monomeric	NA	NA	NA	NA
AXX94943.1\|1230086_1231178_-	YceG-like protein	NA	NA	NA	NA
AXX94944.1\|1231128_1234074_+	AsmA family protein (DUF3971 domain)	NA	NA	NA	NA
AXX94945.1\|1234078_1235284_-	lipoprotein releasing system, transmembrane protein, LolC/E family	NA	NA	NA	NA
AXX94946.1\|1235285_1237904_-	preprotein translocase, SecA subunit	NA	NA	NA	NA
AXX94947.1\|1237960_1238488_+	periplasmic outer membrane-specific lipoprotein chaperone	NA	NA	NA	NA
AXX94948.1\|1238975_1239203_+	D-alanyl carrier protein	NA	NA	NA	NA
AXX94949.1\|1239202_1240321_+	D-alanyl carrier protein:peptidoglycan D-alanyltransferase	NA	NA	NA	NA
AXX94950.1\|1240471_1241608_+	peptidoglycan:teichoic acid D-alanyltransferase	NA	NA	NA	NA
AXX94951.1\|1241604_1243041_+	D-alanine--[D-alanyl carrier protein] ligase	A0A2K9KZV5	Tupanvirus	1.4e-42	30.5
AXX94952.1\|1243225_1243510_+\|transposase	IS3 family transposase orfA	U5P4I9	Shigella_phage	2.6e-12	54.2
AXX94953.1\|1243566_1244394_+\|transposase	IS3 family transposase orfB	U5P429	Shigella_phage	2.5e-71	51.5
AXX94954.1\|1244960_1245695_-	uroporphyrinogen-III (C7)-methyltransferase	NA	NA	NA	NA
AXX94955.1\|1245696_1246005_-	NADH-dependent nitrite reductase, small subunit	NA	NA	NA	NA
AXX94956.1\|1246007_1248470_-	NADH-dependent nitrite reductase, catalytic subunit	NA	NA	NA	NA
AXX94957.1\|1248714_1250106_+	MCP-domain signal transduction protein	A0A2H4J162	uncultured_Caudovirales_phage	4.5e-09	32.5
AXX94958.1\|1250116_1251334_+	globin sensor-containing diguanylate phosphodiesterase	NA	NA	NA	NA
AXX94959.1\|1251318_1253628_-	molybdopterin-dependent oxidoreductase, catalytic subunit	NA	NA	NA	NA
AXX94960.1\|1253624_1255211_-	molybdopterin-dependent oxidoreductase, iron-sulfur subunit	NA	NA	NA	NA
AXX94961.1\|1255340_1257329_-	nitrate reductase	NA	NA	NA	NA
AXX94962.1\|1257531_1259505_+	PAS sensor-containing diguanylate phosphodiesterase	NA	NA	NA	NA
AXX94963.1\|1259496_1261128_-	protein serine/threonine phosphatase/kinase	A0A2H4UVE2	Bodo_saltans_virus	3.9e-12	31.6
AXX94964.1\|1261140_1262421_-	nitrate/nitrite transporter NarK, major facilitator superfamily	NA	NA	NA	NA
AXX94965.1\|1262704_1264084_+	nitrate ABC transporter, substrate-binding protein	NA	NA	NA	NA
AXX94966.1\|1264176_1264986_+	nitrate ABC transporter, permease protein	NA	NA	NA	NA
AXX94967.1\|1264997_1265795_+	nitrate ABC transporter, ATP-binding protein	G3M9Y6	Bacillus_virus	6.6e-29	34.6
AXX94968.1\|1265835_1267014_-	glutathionylspermidine amidase / glutathionylspermidine synthetase	B2ZXR7	Ralstonia_phage	2.0e-34	31.1
AXX94969.1\|1267016_1267694_-	putative lipoprotein	NA	NA	NA	NA
AXX94970.1\|1267791_1269699_-	PAS sensor-containing diguanylate cyclase (NMT1 domain)	G3MA91	Bacillus_virus	1.4e-16	36.1
AXX94971.1\|1269829_1270918_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
AXX94972.1\|1270959_1272801_+	7TMR-DISM-7TM/7TMR-DISMED2 domain-containing two-component system sensor histidine kinase	NA	NA	NA	NA
AXX94973.1\|1272793_1273483_+	two-component system response regulator	NA	NA	NA	NA
AXX94974.1\|1273552_1274314_+	hypothetical protein	NA	NA	NA	NA
AXX94975.1\|1274377_1275058_+	two-component system response regulator	NA	NA	NA	NA
AXX94976.1\|1275134_1275569_+	putative membrane protein	NA	NA	NA	NA
AXX94977.1\|1276050_1277157_+\|integrase	site-specific tyrosine recombinase, phage integrase family (INT_Rci_Hp1_C domain)	A0A067ZJC0	Vibrio_phage	5.4e-37	32.0
1286612:1286628	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2005625 : 2058930

Morganella_phage(16.67%)

integrase,transposase,protease

attL 2030615:2030635|attR 2067863:2067883

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX95689.1\|2005625_2006981_+\|integrase	site-specific tyrosine recombinase, phage integrase family	NA	NA	NA	NA
AXX95690.1\|2006970_2007558_+	hypothetical protein	NA	NA	NA	NA
AXX95691.1\|2007558_2010456_+\|integrase	site-specific tyrosine recombinase, phage integrase family	NA	NA	NA	NA
AXX95692.1\|2010525_2011101_-	zinc/iron-chelating domain-containing protein	NA	NA	NA	NA
AXX95693.1\|2011105_2011576_-\|protease	ubiquitin protease family protein (prokaryotic JAB domain)	NA	NA	NA	NA
AXX95694.1\|2011580_2013200_-	ubiquitin-activating E1 family protein	NA	NA	NA	NA
AXX95695.1\|2013237_2013660_-	DUF1508 domain-containing protein (tandem domains)	NA	NA	NA	NA
AXX95696.1\|2013905_2014796_+	transcriptional regulator (WYL domain)	NA	NA	NA	NA
AXX95697.1\|2014854_2015043_+	hypothetical protein	NA	NA	NA	NA
AXX95698.1\|2015073_2015460_+	hypothetical protein	NA	NA	NA	NA
AXX95699.1\|2015726_2016872_-	hypothetical protein	A0A1W6JNS5	Morganella_phage	1.1e-11	24.6
AXX95700.1\|2016897_2019570_-	putative metal-dependent phosphatase (AAA domain)	A0A1B1IUG5	uncultured_Mediterranean_phage	1.8e-25	25.8
AXX95701.1\|2020774_2021155_+	putative membrane protein	NA	NA	NA	NA
AXX95702.1\|2021162_2021678_-	peptide deformylase	NA	NA	NA	NA
AXX95703.1\|2021689_2022274_-\|protease	serine protease ClpP	A0A223W000	Agrobacterium_phage	9.3e-57	57.9
AXX95704.1\|2022288_2023590_-	trigger factor (peptidyl-prolyl cis /trans isomerase, chaperone)	NA	NA	NA	NA
AXX95705.1\|2023681_2025346_+	von Willebrand factor type A (vWA) domain-containing protein	NA	NA	NA	NA
AXX95706.1\|2025355_2026474_-	polyphosphate kinase 2	NA	NA	NA	NA
AXX95707.1\|2026473_2027415_-	polyphosphate kinase 2	NA	NA	NA	NA
AXX95708.1\|2027424_2028573_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA
AXX95709.1\|2028562_2028727_-	rubredoxin	NA	NA	NA	NA
AXX95710.1\|2028752_2029946_-	saccharopine dehydrogenase-like protein	NA	NA	NA	NA
2030615:2030635	attL	NA	NA	NA	NA
AXX95711.1\|2030636_2031737_+\|integrase	site-specific tyrosine recombinase, phage integrase family (INT_Rci_Hp1_C domain)	A0A059WLJ1	Vibrio_phage	8.8e-40	33.1
AXX95712.1\|2033220_2034414_-	hypothetical protein	NA	NA	NA	NA
AXX95713.1\|2034455_2035379_-	hypothetical protein	NA	NA	NA	NA
AXX95714.1\|2035379_2037416_-	hypothetical protein	NA	NA	NA	NA
AXX95715.1\|2037417_2037864_-	hypothetical protein	NA	NA	NA	NA
AXX95716.1\|2037863_2038991_-	hypothetical protein	NA	NA	NA	NA
AXX95717.1\|2038993_2040010_-	metal-dependent hydrolase, beta-lactamase superfamily	NA	NA	NA	NA
AXX95718.1\|2040160_2041042_-	transcriptional regulator (WYL domain)	NA	NA	NA	NA
AXX95719.1\|2041069_2042671_-	hypothetical protein	NA	NA	NA	NA
AXX95720.1\|2042679_2043423_-	hypothetical protein	NA	NA	NA	NA
AXX95721.1\|2043479_2043785_+	transcriptional regulator, XRE family	NA	NA	NA	NA
AXX95722.1\|2043781_2044375_-	hypothetical protein	NA	NA	NA	NA
AXX95723.1\|2044549_2045140_-	hypothetical protein	NA	NA	NA	NA
AXX95724.1\|2045507_2045669_-	hypothetical protein	NA	NA	NA	NA
AXX95725.1\|2045668_2045974_-	DUF2958 domain-containing protein	NA	NA	NA	NA
AXX95726.1\|2045973_2046876_-	putative Rad52/22 family double-strand break repair protein	F8TUV5	EBPR_podovirus	7.2e-16	38.6
AXX95727.1\|2046893_2047520_-	hypothetical protein	NA	NA	NA	NA
AXX95728.1\|2047530_2048358_-	DUF932 domain-containing protein	A0A1L2CVW9	Pectobacterium_phage	3.5e-25	27.5
AXX95729.1\|2048521_2048746_-	hypothetical protein	NA	NA	NA	NA
AXX95730.1\|2048997_2049876_-	hypothetical protein	NA	NA	NA	NA
AXX95731.1\|2049885_2052357_-	hypothetical protein	NA	NA	NA	NA
AXX95732.1\|2052358_2052553_-	putative transcriptional regulator	NA	NA	NA	NA
AXX95733.1\|2052676_2053999_-	hypothetical protein	NA	NA	NA	NA
AXX95734.1\|2054279_2054693_+	hypothetical protein	NA	NA	NA	NA
AXX95735.1\|2054685_2055534_+	nucleotidyltransferase, AbiEii toxin family	NA	NA	NA	NA
AXX95736.1\|2055707_2057582_+	hypothetical protein	NA	NA	NA	NA
AXX95737.1\|2057565_2058930_-\|transposase	transposase, IS4 family	NA	NA	NA	NA
2067863:2067883	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2227923 : 2239289

Tupanvirus(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX95892.1\|2227923_2228799_-	glycosyltransferase, family 2	A0A1V0SAH6	Catovirus	1.2e-10	34.3
AXX95893.1\|2228795_2229701_-	alpha-1,2-fucosyltransferase	A0A0N9R2S4	Chrysochromulina_ericina_virus	5.6e-16	28.6
AXX95894.1\|2229702_2230314_-	sugar O-acyltransferase	NA	NA	NA	NA
AXX95895.1\|2230300_2231401_-	dTDP-4-amino-4,6-dideoxygalactose transaminase	A0A2K9L0G1	Tupanvirus	2.5e-34	33.3
AXX95896.1\|2231400_2231913_-	WxcM-like sugar acyltransferase	NA	NA	NA	NA
AXX95897.1\|2231902_2232307_-	WxcM-like domain-containing protein	NA	NA	NA	NA
AXX95898.1\|2232303_2233347_-	dTDP-D-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	4.1e-79	46.8
AXX95899.1\|2233339_2234215_-	glucose-1-phosphate thymidylyltransferase, short form	K7QKA7	Escherichia_phage	3.9e-107	66.9
AXX95900.1\|2234211_2235267_-	GDP-L-fucose synthetase	M1HWW2	Paramecium_bursaria_Chlorella_virus	2.8e-91	51.3
AXX95901.1\|2235275_2236421_-	GDP-mannose 4,6-dehydratase	M1HVG7	Acanthocystis_turfacea_Chlorella_virus	8.6e-123	59.9
AXX95902.1\|2236422_2236884_-	GDP-mannose mannosylhydrolase	NA	NA	NA	NA
AXX95903.1\|2236887_2238261_-	bifunctional mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase	A0A1V0SH58	Hokovirus	5.6e-60	35.0
AXX95904.1\|2238257_2239289_-	UDP-glucose 4-epimerase	A0A2K9L1R4	Tupanvirus	9.0e-87	49.5

DBSCAN-SWA_4

2480402 : 2487361

Campylobacter_virus(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX96138.1\|2480402_2481083_+	7-cyano-7-deazaguanine synthase	M1PKZ7	Cellulophaga_phage	6.9e-27	37.0
AXX96139.1\|2481082_2481616_+	6-carboxy-5,6,7,8-tetrahydropterin synthase	H6SU72	Campylobacter_virus	2.6e-45	51.1
AXX96140.1\|2481608_2482373_+	7-carboxy-7-deazaguanine synthase	D5GV09	Campylobacter_virus	1.0e-50	43.7
AXX96141.1\|2482444_2483188_+	3-oxoacyl-[acp] reductase	A0A0N9R355	Chrysochromulina_ericina_virus	1.2e-11	26.6
AXX96142.1\|2483281_2483512_+	acyl carrier protein	M4QDG5	Prochlorococcus_phage	5.4e-08	66.0
AXX96143.1\|2483619_2484879_+	beta-ketoacyl-[acp] synthase II (KASII)	NA	NA	NA	NA
AXX96144.1\|2484945_2485884_+	acetyl-CoA carboxylase, carboxyltransferase, alpha subunit	NA	NA	NA	NA
AXX96145.1\|2485893_2486238_-	histidine triad nucleotide-binding protein, Hint/PKCI branch	NA	NA	NA	NA
AXX96146.1\|2486368_2487361_+\|tRNA	phenylalanyl-tRNA synthetase, alpha subunit	A0A2I2L4E3	Orpheovirus	1.2e-32	34.9

DBSCAN-SWA_5

2521117 : 2534012

Bacillus_phage(37.5%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX96181.1\|2521117_2523172_-	UvrD/REP family helicase	A7KV33	Bacillus_phage	4.1e-107	37.4
AXX96182.1\|2523288_2524185_+	transcriptional regulator, LysR family	NA	NA	NA	NA
AXX96183.1\|2524210_2525173_-	radical SAM protein, TIGR01212 family	A0A2H4PQV5	Staphylococcus_phage	3.6e-13	31.7
AXX96184.1\|2525172_2526522_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.5e-54	34.3
AXX96185.1\|2526534_2527308_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
AXX96186.1\|2527322_2528252_-	thioredoxin reductase	G3MA85	Bacillus_virus	5.5e-59	42.6
AXX96187.1\|2528464_2528782_-	thioredoxin	A0A0K2FIM3	Achromobacter_phage	1.3e-12	40.2
AXX96188.1\|2528966_2531522_+\|tRNA	alanyl-tRNA synthetase	A0A1V0SK38	Klosneuvirus	3.3e-74	35.4
AXX96189.1\|2531532_2532012_+	putative membrane protein	NA	NA	NA	NA
AXX96190.1\|2532018_2532585_-	hypothetical protein	NA	NA	NA	NA
AXX96191.1\|2532711_2533335_+	outer membrane lipoprotein, NlpC/P60 family	S5MM68	Bacillus_phage	2.2e-11	35.1
AXX96192.1\|2533358_2534012_+	outer membrane lipoprotein, NlpC/P60 family	S5MM68	Bacillus_phage	3.1e-16	43.0

DBSCAN-SWA_6

2749148 : 2759132

Staphylococcus_phage(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXX96403.1\|2749148_2750375_-	flavoprotein, HI0933 family	A0A2H4PQX1	Staphylococcus_phage	1.1e-06	33.7
AXX96404.1\|2750486_2751488_+	ATP-binding protein (AAA domain)	H6WG28	Cyanophage	1.7e-58	41.3
AXX96405.1\|2751491_2752622_+	putative metallopeptidase (DUF2201 domain)	A0A2I7SAP6	Vibrio_phage	3.9e-27	27.9
AXX96406.1\|2752618_2752933_-	Cupin domain-containing protein	NA	NA	NA	NA
AXX96407.1\|2753146_2754415_+	O-acetylhomoserine sulfhydrylase	A0A0B5JD48	Pandoravirus	1.1e-14	27.1
AXX96408.1\|2754418_2754832_+	transcriptional regulator, IscR/Rrf2 family	NA	NA	NA	NA
AXX96409.1\|2754844_2755777_+	cysteine synthase	A0A1X9I5K7	Streptococcus_phage	1.4e-78	52.7
AXX96410.1\|2755808_2756039_+	DUF2061 domain-containing protein	A0A1B0XTK5	Freshwater_phage	7.7e-07	38.7
AXX96411.1\|2756048_2756750_+	phosphoadenosine phosphosulfate reductase	M4W6M9	Bacillus_phage	1.6e-07	34.1
AXX96412.1\|2756761_2757673_+	sulfate adenylyltransferase, subunit CysD	NA	NA	NA	NA
AXX96413.1\|2757674_2759132_+	sulfate adenylyltransferase, GTPase subunit CysN	A0A1V0SGC3	Hokovirus	4.4e-31	30.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP032097

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection