CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP032094	Vibrio alfacsensis strain CAIM 1831 chromosome II, complete sequence	0 crisprs	csa3,WYL,cas3	0	2
CP032093	Vibrio alfacsensis strain CAIM 1831 chromosome I, complete sequence	4 crisprs	DEDDh,csx1,cas3,DinG,cas2,cas1,RT,csx16,cas10,csm3gr7,csx10gr5,cas6,csm4gr5,csa3	2	3
CP032095	Vibrio alfacsensis strain CAIM 1831 plasmid pVa1, complete sequence	0 crisprs	DEDDh	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

379065 : 386697

Escherichia_phage(83.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY02710.1\|379065_380421_+	hypothetical protein	O64347	Escherichia_phage	1.0e-13	26.1
AXY02711.1\|380411_380651_+	hypothetical protein	NA	NA	NA	NA
AXY02712.1\|380738_382241_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.3e-75	41.0
AXY02713.1\|382801_383572_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.6e-56	49.6
AXY02714.1\|383847_384756_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.3e-102	68.7
AXY02715.1\|384781_386038_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	2.5e-131	56.7
AXY03616.1\|386064_386697_+	aldolase	A0A077SK32	Escherichia_phage	1.7e-67	61.7

DBSCAN-SWA_2

1335430 : 1346576

Escherichia_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY03405.1\|1335430_1337800_+	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	1.1e-172	37.5
AXY03406.1\|1338011_1338791_+	hypothetical protein	NA	NA	NA	NA
AXY03407.1\|1338973_1339819_-	dimethylsulfoxide reductase	A0A077SK59	Escherichia_phage	1.7e-19	32.0
AXY03408.1\|1339820_1340435_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	3.7e-80	62.0
AXY03409.1\|1340444_1342892_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	7.5e-217	47.6
AXY03410.1\|1343197_1343782_+	molecular chaperone	A0A077SLS7	Escherichia_phage	7.2e-25	36.2
AXY03411.1\|1343781_1344318_+	4Fe-4S dicluster domain-containing protein	A0A077SLP0	Escherichia_phage	2.8e-07	27.7
AXY03412.1\|1344415_1345237_+	LuxR family transcriptional regulator	NA	NA	NA	NA
AXY03413.1\|1345319_1346576_+\|tRNA	tyrosine--tRNA ligase	A0A1S6UA79	Serratia_phage	7.1e-86	41.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP032093

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CRISPR-Cas detection and classification

Crispr_ID: CP032093_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032093_2

1352523-1353262

TypeIII

Consensus_repeat	Method
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	PILER-CR
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	CRISPRCasFinder
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	CRT

10 spacers

cas2,cas1,RT,csx16,csx1

The CRISPR arrays of CP032093_2

>merge|CP032093|2|1352523-1353262|PILER-CR,CRISPRCasFinder,CRT
GTATTCGACATGCCCAGATTAGATGGGATTAAGACAACATATGTTGATGTTGAATATGTTGTTGTAAATAGTATTCGACATGCCCAGATTAGATGGGATTAAGACTGTAACTATCCAAGCCACCCAAGCGAAAAATGCTACGGTGTATTCGACATGCCCAGATTAGATGGGATTAAGACTTTCCCTAATAATGGAGTTTAATTCAGTTACATGTTTGTATTCGACATGCCCAGATTAGATGGGATTAAGACAAACAAGTCGTCTTCATCCACATATTCAGGAACTGTATTCGACATGCCCAGATTAGATGGGATTAAGACCTGGATCATTGGATGTTCAAGCGTCATGTTTTGAGTATTCGACATGCCCAGATTAGATGGGATTAAGACTCTCAACTTCGAAACGAAATGCTTTGTTTGGGTCCGTATTCGACATGCCCAGATTAGATGGGATTAAGACTTATTCTTGAGCATATTGAAATCAATTGACTTTTCGTGTATTCGACATGCCCAGATTAGATGGGATTAAGACTCCAAGTAGGATAGCATCGTTTGTATGGTAAAGGGTATTCGACATGCCCAGATTAGATGGGATTAAGACATCGGGTTCATGCCGGCTTGAATAGATTTCATGCCGTATTCAACATGCCCAGATTAGATGGGATTAAGACGAATAGGTTTGTCCATAGGCGTTCATCGTTCTTGCGTATTCGACATGCCCAGATTAGATGGGATTTTCTT

>CP032093|2|1|1352523-1353192|PILER-CR
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	AACATATGTTGATGTTGAATATGTTGTTGTAAATA
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	TGTAACTATCCAAGCCACCCAAGCGAAAAATGCTACGGT
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	TTTCCCTAATAATGGAGTTTAATTCAGTTACATGTTT
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	AAACAAGTCGTCTTCATCCACATATTCAGGAACT
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	CTGGATCATTGGATGTTCAAGCGTCATGTTTTGA
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	TCTCAACTTCGAAACGAAATGCTTTGTTTGGGTCC
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	TTATTCTTGAGCATATTGAAATCAATTGACTTTTCGT
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	TCCAAGTAGGATAGCATCGTTTGTATGGTAAAGG
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	ATCGGGTTCATGCCGGCTTGAATAGATTTCATGCC
GTATTCAACATGCCCAGATTAGATGGGATTAAGAC

>CP032093|2|2|1352523-1353262|CRISPRCasFinder
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	AACATATGTTGATGTTGAATATGTTGTTGTAAATA
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	TGTAACTATCCAAGCCACCCAAGCGAAAAATGCTACGGT
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	TTTCCCTAATAATGGAGTTTAATTCAGTTACATGTTT
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	AAACAAGTCGTCTTCATCCACATATTCAGGAACT
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	CTGGATCATTGGATGTTCAAGCGTCATGTTTTGA
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	TCTCAACTTCGAAACGAAATGCTTTGTTTGGGTCC
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	TTATTCTTGAGCATATTGAAATCAATTGACTTTTCGT
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	TCCAAGTAGGATAGCATCGTTTGTATGGTAAAGG
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	ATCGGGTTCATGCCGGCTTGAATAGATTTCATGCC
GTATTCAACATGCCCAGATTAGATGGGATTAAGAC	GAATAGGTTTGTCCATAGGCGTTCATCGTTCTTGC
GTATTCGACATGCCCAGATTAGATGGGATTTTCTT

>CP032093|2|1|1352523-1353262|CRT
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	AACATATGTTGATGTTGAATATGTTGTTGTAAATA
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	TGTAACTATCCAAGCCACCCAAGCGAAAAATGCTACGGT
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	TTTCCCTAATAATGGAGTTTAATTCAGTTACATGTTT
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	AAACAAGTCGTCTTCATCCACATATTCAGGAACT
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	CTGGATCATTGGATGTTCAAGCGTCATGTTTTGA
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	TCTCAACTTCGAAACGAAATGCTTTGTTTGGGTCC
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	TTATTCTTGAGCATATTGAAATCAATTGACTTTTCGT
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	TCCAAGTAGGATAGCATCGTTTGTATGGTAAAGG
GTATTCGACATGCCCAGATTAGATGGGATTAAGAC	ATCGGGTTCATGCCGGCTTGAATAGATTTCATGCC
GTATTCAACATGCCCAGATTAGATGGGATTAAGAC	GAATAGGTTTGTCCATAGGCGTTCATCGTTCTTGC
GTATTCGACATGCCCAGATTAGATGGGATTTTCTT

Protein	Signature genes	Signature genes Name	Protein_function
CP032093.1\|AXY00916.1\|1357596_1358220_-\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00910.1\|1349595_1350597_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226699
CP032093.1\|AXY00918.1\|1359250_1359547_+\|CRISPR-associated-protein-Csx16	csx16	pfam09652_csx16_CAS-I:CAS-III	gnl\|CDD\|370601
CP032093.1\|AXY00911.1\|1350589_1351573_-\|protein-phosphatase-2C-domain-containing-protein	unknown	unknown	gnl\|CDD\|379325
CP032093.1\|AXY00914.1\|1355426_1355939_-\|hypothetical-protein	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
CP032093.1\|AXY02332.1\|1351551_1352160_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226696
CP032093.1\|AXY00917.1\|1358253_1359207_+\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00912.1\|1353554_1353836_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP032093.1\|AXY00906.1\|1344945_1345500_+\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00907.1\|1345538_1345820_+\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00905.1\|1343624_1344806_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173841
CP032093.1\|AXY00904.1\|1342375_1343623_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
CP032093.1\|AXY00908.1\|1345914_1346358_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
CP032093.1\|AXY00903.1\|1341380_1342031_+\|sporulation-control-protein-Spo0M	unknown	unknown	gnl\|CDD\|369195
CP032093.1\|AXY00921.1\|1361750_1363466_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|274251
CP032093.1\|AXY00919.1\|1359701_1360925_-\|DUF1887-family-protein	csx1	pfam09002_csx1_CAS-III	gnl\|CDD\|312526
CP032093.1\|AXY00909.1\|1346469_1346655_-\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00920.1\|1361285_1361606_-\|DUF1232-domain-containing-protein	unknown	unknown	gnl\|CDD\|225876
CP032093.1\|AXY00913.1\|1353849_1355472_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766
CP032093.1\|AXY00915.1\|1355926_1356943_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP032093.1\|AXY00910.1\|1349595_1350597_-\|hypothetical-protein	gnl\|CDD\|226699	COG4248, COG4248, Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only].	1.06923e-33
CP032093.1\|AXY00911.1\|1350589_1351573_-\|protein-phosphatase-2C-domain-containing-protein	gnl\|CDD\|379325	pfam13672, PP2C_2, Protein phosphatase 2C. Protein phosphatase 2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.	4.56267e-31
CP032093.1\|AXY00912.1\|1353554_1353836_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.7354e-24
CP032093.1\|AXY02332.1\|1351551_1352160_-\|VWA-domain-containing-protein	gnl\|CDD\|226696	COG4245, TerY, Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only].	2.13374e-51
CP032093.1\|AXY00918.1\|1359250_1359547_+\|CRISPR-associated-protein-Csx16	gnl\|CDD\|370601	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548). This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPRs (Clustered Regularly Interspaced Short Palindromic Repeats). In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas (CRISPR-associated) genes.	5.67352e-31
CP032093.1\|AXY00913.1\|1353849_1355472_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	5.85464e-89
CP032093.1\|AXY00905.1\|1343624_1344806_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	1.96014e-124
CP032093.1\|AXY00904.1\|1342375_1343623_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	7.83738e-67
CP032093.1\|AXY00908.1\|1345914_1346358_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.6861e-47
CP032093.1\|AXY00903.1\|1341380_1342031_+\|sporulation-control-protein-Spo0M	gnl\|CDD\|369195	pfam07070, Spo0M, SpoOM protein. This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH.	2.21282e-57
CP032093.1\|AXY00921.1\|1361750_1363466_-\|radical-SAM-protein	gnl\|CDD\|274251	TIGR02668, moaA_archaeal, probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666). [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.58764e-27
CP032093.1\|AXY00919.1\|1359701_1360925_-\|DUF1887-family-protein	gnl\|CDD\|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	7.51025e-38
CP032093.1\|AXY00914.1\|1355426_1355939_-\|hypothetical-protein	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	8.73104e-46
CP032093.1\|AXY00920.1\|1361285_1361606_-\|DUF1232-domain-containing-protein	gnl\|CDD\|225876	COG3339, COG3339, Uncharacterized conserved protein [Function unknown].	6.26954e-17

>CP032093.1|AXY02332.1|1351551_1352160_-|VWA-domain-containing-protein
MLVMDASSSMSGAPNQELNLGLSQFVEEVQADEMASCSVEAGVISFGHNVELVQPMMTVDDIEVLPKIDAYGMTPMGEAVNLAIDKLEARKHEYKQSGVSYYQPWLVLMTDGEPNDDWKAAAQRLKQLAQNQKMVVLCVGIGDAADMQILQEFSVLEPKKLKGLEFRAFFRWLSASMQRVSQSIPGDKVALPSTSGWDAISV
>CP032093.1|AXY00911.1|1350589_1351573_-|protein-phosphatase-2C-domain-containing-protein
MGRNQRLTLCDSNNKRNNKPLYDLLLRSATSFGDCTVSHYVPLLPYSDPQVPFSTSASNWTYAAQSVVGYRHIESSLPCQDACCSQANLRPIAILCDGAGSAKLSHLGSQGLTAGLLRLCSTLEPLLMSMLDTQDTPNKSDQALFGNLLARHSKGIIKDLATTYQQQAKEFRSTLLMAVVGRYRSLWLQVGDGFILTRNKRSHEWTVLTPPAKGEFANQTCFVDASLSLNQVQSGWLENQFDAVMLLSDGSAEKLVDNRSHTPANKACNSLLSWLEDDKSANKNLHYFLSDPKIWCRSTGDDKSIALLGYQEAKQHTPPFIEEARYV
>CP032093.1|AXY00910.1|1349595_1350597_-|hypothetical-protein
MFNLSNDNSTVLQTVFDFNGESRQLGKELARGGEGCVYPLSINCKILTKIYHSDYLGDKERMDKINAMIKLYKSTPSLSKLPVAWPQLAVFDEQRIWQGYAMKAADGIKLSVFKVPKLVRKYFPEINRTDVIEILQSLLKTAEQLHSHGIYMGDINLDNFLVEPQTKLVSFIDCDSYQVSIQGQHFPCPVGTDSMIPPEHQGQNLSSVVRNVYSDTFSLTIICFMLLMSGRHPYEHIGGESISHNIRIGHFPWGQSIRPGSNGAVPVGPWYNWWSHLSGTLKGAFIQTFTAGSSNVSERVPLSELRKLLSQYKYSIEKGYLSNEMWPNQAKNK
>CP032093.1|AXY00909.1|1346469_1346655_-|hypothetical-protein
MFYTKQHMILVFAFVAMIYAMCSRKLTAAGTKLSTNTDVHVFVRTSILKKRHKITTAFYIN
>CP032093.1|AXY00908.1|1345914_1346358_+|GGDEF-domain-containing-protein
MTLCRNRQYIESRMQKRGYWQHVQQSGHSLIVFDIDHFKHVNDTYGHLEGDRTLAQVASIVRRCLRESDEFIRWGGDEFIVLFDIKAHEAVHIANRMREIVKQETMVSLSIGVTDILIDDSYTSAMGRADCALYEAKQSGRNQVKVR
>CP032093.1|AXY00907.1|1345538_1345820_+|hypothetical-protein
MDEQVSVLFLTKDGEVRLPKKNKGESIFTLFKSISSEQFEAAKMQDRIVYTYSLNKSELLYIHYFKDINRMLLIKMDITDYYVQSIKQHIYSF
>CP032093.1|AXY00906.1|1344945_1345500_+|hypothetical-protein
MKSKWQGLDGHILDTARIAMVVILVFSILNVAHFYMALKIFQENIADAALQRTTNYISRILKDVNNTYTCLSKTLAEIYEYKLQGPYNIDAILLDLKNKKEQLFVHTIGLVDIRDNLYLDSFGRVLSIDTTSERDQWVQEFIDQPEDSRYHFYDPDQSEYEALYSFYYDHKLKIILVKPSVFLA
>CP032093.1|AXY00905.1|1343624_1344806_+|acyl-CoA-dehydrogenase
MKLTFSTEDELFRHEVANWLTNHLVGEFEPLRFRGGPGDEHMFTEERKVWEQQLAKGGWTCIGWPLEDGGRGATIEQQVIFHEEYARAGGPGRVGHIGEGLAGPTISMFGTKEQKERYLPGIVSGKELWCQGYSEPDAGSDLAGVKTKARYDEAINQWVISGQKVWTSLAMDADWCFVIARCEPGSSGHKGLGFFLVDMAQENVQVRPIKQLTGTCEFNEVFFDDAVAADIIGEPGDGWRIAMALLGLERGVSTLGQQMLFQNELNEVIELAKKNGMADNCDIRQRIAKAHSELTIMRYNSLRMLSSKQSGQLQKEALVYKLFWASWHRDLGKLAMDVMGPESEILACKSYDLTRLQSLFLFTRSDTIYGGTNEIQRNIIAERGLGMPKEPKL
>CP032093.1|AXY00904.1|1342375_1343623_+|acyl-CoA-dehydrogenase
MNFSYTDEQIMIEQSASDFFSEVSPIEAAREIMVTEQGYDVKVWQKICDEMFFHGILIPEENGGLGLGYVELCIVLEQIGAKLACLPFHASACMATSALLVAGSEYQKQYYFEHLLRGEVATLAYTGIHTGTKTGWGCDAVDVTYQKQGQQYRLNGTYRYVSFGHNAQWLILAARKKGTRGKEGISLFVTKADTPGISRNLLPTMDQTQKQAQIELDNVLLDASCVMPNEGHCGEALHTVIAVGQIGLAAEQLGGAQAVLEQTVQYTQQRTQFNRPIASFQAVKHQAADMMLKAEAGCSSVYYAACTADATPLARPTSTEITLNGRQPLSERLNELCQAAYIAKSYCSDAYFFNAATAIQLHGGVGFTWEFDVHLYFKRAQASGVMLGNSAYHHELIAEHLLPLATKSKNQSSGA
>CP032093.1|AXY00903.1|1341380_1342031_+|sporulation-control-protein-Spo0M
MRGHVQIKGGDVEQQIDAITLKLNTEMKVEADDSVSYQTFTIDQLKAVDPFVIQPNEEKQVPFELKLHDETPITAVSALKNQCHVWVETTLDIGFAIDPRDRDYVEVKPLSVVSRVIRSIEQAGFTMVKADVEKGFLRGNGFSSRSGIYQELEFRNNGFISTKEIELSFILDGAVVHCLVEIDRSFSMSGDQYRSFTLPLDASDSQVASALAPVIG
>CP032093.1|AXY00912.1|1353554_1353836_-|CRISPR-associated-endonuclease-Cas2
MRHIFLVCYDISDNKTRRYVEKALLNHGVRVQYSVFECMLTLQQLHRLRYSLRQKIDPITDAVHYFHLCKHCKAKRFAQGSGQIHTYKSYELV
>CP032093.1|AXY00913.1|1353849_1355472_-|CRISPR-associated-endonuclease-Cas1
MQQKVSTALANSPYVNLVNQAITAQQQNLDNELSFGSSVGVGIPQGSPLSPLLANLFLNELDIAMLDSGYEIVRYADDFVVHCKTEQVARLALEEVNLILERSHLELNQEKTKVTNFDLGFHFLGVHFIDQLTLPESLHTDRCWHNLKPNVTSPPDIDNEIDLTITLPKNYWLDSVPNHLVHLNDCIEDELEPQQQTLDKTSASISQIAKLRTLYVQKQGAVMSMRNGQIRVSHKGQELQCFPAATIDTIWLFGNVHPTIAVIKHCLTHAIPIILLSQAGQRCGAFGFETQNNPELLQAQVFEQSDSARCLKHVRFFISQKLNNQLQLLKRWNKQGLPLDPTCINGLINARNSVAECNHIDQLRGYEGIGARFYFQQWKTWSQHTWHFSGRNRRPPKDPINVLLSFGYQLLFNNIQVILEVRGISPLFGYLHKQANGFPSLVLDLMEPWRPLVVDEVVLKLILRQTLKASDFVQTDQGCILLERGKKIFVQAFEQRMQQRFTHPDLKIKTDLRRFIDLQVLELRQLLLTKDGSLTPLRLR
>CP032093.1|AXY00914.1|1355426_1355939_-|hypothetical-protein
MRIMNNATAVTELVTLQELHCAFHRVAENNGIAGTDGISIEQFELAKERYLSQLLNDLNHNSWQPKPYLRVNVPKKNGGERYLAIPCVRDRVVHTWLAQKISPIFESQFTRSSYGYRPHRSYMDAIQRVEFLRDSGYHWVVDADITAFLIILTTIYCNKKSQPHWLTHLM
>CP032093.1|AXY00915.1|1355926_1356943_-|hypothetical-protein
MEQSTQELTQAINQLAIALNQVTQCLQSIVNQSNSPQILEHVKPAEIIEKMDYLASQTSPLIHPSTSVQQLSPKSNVTNISALPEVVCNWFRKYHLGFVRFNRPAANTERSRQLSLHIARHYNDVERLMSLLNQWATGSRTLNLNLRNKAVEVITETTSVANQMNDIGFLQHYQYKRSPHCFLQVQSNGLPATQSYLKGKWFELAIEQQLIEMKRTISTLEWVSNPVIRTSKGQEREIDFIVSLGEQIFVVEASTSPWQKTATETISLANQLQLPIKHCLIVSPEHEPQLMKEFSELHGANILSFEQFSLWIDQQMEQPSPQNESDNVMIMDMESCVL
>CP032093.1|AXY00916.1|1357596_1358220_-|hypothetical-protein
MGASYREQANAKDKHKFVIAYKKHLTLYSDLLNIERHAMTHILTLNTQENMTRYQTQVWKILSDSYQTVSGGLHYTSPKALIEESDQWQILVKDGIVLAVTVYKAKQGWKLVAMGIHHQYIPQAKSALAILIKSALNHSWMELSEGAERFVMKHCDGHKYMIHISIANKLLGKFIEPSTTSQYHYKRKIMDKVKTKILLGSPMMTFT
>CP032093.1|AXY00917.1|1358253_1359207_+|hypothetical-protein
MCKQSSLSKYQKQIVKELTGLMGVNIPFTYEKAQNNHLKVLIDGIEKPLYTGSTPSDRNSAKNFIAQVKRAIKDMALDVNEELEAAKRAIPFENVQNKEVDKMVECCIKSLRTRKESLKKKETDYLLEQGDLDLLHPYRSEVVKLTLEHAMKQRKQLGYFRPKQKKELEKSVRKHLDFIMPNKADYSDLLACQHTERDSQTVQQSYLEASNVVMLDTTNQGSSPVVQRQSASHEEAVTKLELTDQAQHGNIALQLMNIAKGKRVDMLRDLSHDHIIQLLADIEQAKELNIRCAIADIKQLVKVNDVPLERLFDALNR
>CP032093.1|AXY00918.1|1359250_1359547_+|CRISPR-associated-protein-Csx16
MKTYFVTRHPATKAWAKDRQMKIDHWLEHISDLTLFNPGDVVYGTLPIQMAAQLCKQGVRYGHFTLIVPPHLRGLEFSAEQLQSCQPKIEFFEVMKVG
>CP032093.1|AXY00919.1|1359701_1360925_-|DUF1887-family-protein
MRIKNLLREITVTIHINLLSAQMIPNIIPILAMKESVQKVYIVIAGSEFDSKSAHLKQFYYNNGIEDVKEFYCPDANDYYSLRHKAKELFDDIQALHPGQQIILNATCGTKPMSFAFVRQFDKPEDNCLAIYVASNSNQIIFLSDSDKLTNVDTRSVMTINDYLYLNMFKLYQKTDMSCDDDVTYRAGISKSILKLASDYPKLVSLVNHLAQESNFNHASQFQPVVSLLMRPQGTVEELFNILKYADLIQYTDTSITFNSPEVSRYLGGGWFEELIYLAAKEAQVEEVALNVTGNLINRDGNESSVKNELDVVLLHNNHMMIIEAKTANWENQIKAGQEAMSKLDSLSQYYGGSDTKALIATIYPLPDAVQQRVESMRHISALRVETYEQLVERFKDWKLQCSRKIG
>CP032093.1|AXY00920.1|1361285_1361606_-|DUF1232-domain-containing-protein
MTYSEPSTSDFWEKITHGFKKMGGEVAILAITLWLVMTDPKTPISIKITIGSALAYLIMPVDMIPDFIPVTGYADDLAALSAAATAAGTSITEEHKTQAREKWEAL
>CP032093.1|AXY00921.1|1361750_1363466_-|radical-SAM-protein
MSFNISSPFMGLDYSIHTDQSTAKLALHACDGDILSPLVKIELTLAESGIKTIVITNTPLATKQQVRLKKLNYHLTHDQNYQKAVTYRKSVRFSVTEKCNYHCFFCHEEGMEMEVKRETSSNETFFDVIKQLAELNYDDFTFTGGEPLLNWRTVDACMSYMETINYLPEVTIVTNGERLNPRMLERLSSYPGKVRLNLSLHSFLDDEYLEIVHRKKKPGFGSDTLLDTIKQKMVMLNEANIPFKLNVVLLKDINTSHQSLSAILKYAAEYNATSVKFLELLITEKLRNFYPYFYTLDSVKQTLKDELTLVWQNQKKDVYQYQDTSLEVELQHCPCARGCNTCLLNRGVTFTAEMKFFPCFLNPQDNYALSDNNLAECVEKGDDYIEIMAKHYQDNSPILIRESYSTKREQAYFYVINSSDKQSISRLLKGRLTRIRTFNEQYFSKPEQPRYEICKLATNTHEEHAYSLEVKQRIDADTQGLHISEFLHEGIKVYDRQCYLDAMLKEGFEQSHTLDWEIEYYATKNESFSISANKQTGLLFLRTQAPFELLSIKSEPVTVPLPVYIQSLLTS

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Crispr_ID: CP032093_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032093_3

1357246-1357562

TypeIII

Consensus_repeat	Method
GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC	PILER-CR
GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC	CRISPRCasFinder
GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC	CRT

4 spacers

RT,cas1,cas2,csx16,csx1,cas10,csm3gr7,csx10gr5

The CRISPR arrays of CP032093_3

>merge|CP032093|3|1357246-1357562|PILER-CR,CRISPRCasFinder,CRT
GTATTCGACGTGCCCAGATTAGATGGGATTAAGACTTTTAAAGCAAGTGTAACGAATGTCATAAAACTCATGTATTCGACGTGCCCAGATTAGATGGGATTAAGACCATGAAACTTCAATGTATCATCTAATAGCATTTGGTATTCGACGTGCCCAGATTAGATGGGATTAAGACGATTTTAGTTTCACCGAAACCTTTAGTTACTTCGATGTATTCGACGTGCCCAGATTAGATGGGATTAAGACCGAGGAAGTTGAATGCCACCTTTGGATTCCATTGTTGTATTGAATTTGCCCAGATTAGATGGGATTAACAA

>CP032093|3|2|1357246-1357491|PILER-CR
GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC	TTTTAAAGCAAGTGTAACGAATGTCATAAAACTCAT
GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC	CATGAAACTTCAATGTATCATCTAATAGCATTTG
GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC	GATTTTAGTTTCACCGAAACCTTTAGTTACTTCGAT
GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC

>CP032093|3|3|1357246-1357562|CRISPRCasFinder
GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC	TTTTAAAGCAAGTGTAACGAATGTCATAAAACTCAT
GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC	CATGAAACTTCAATGTATCATCTAATAGCATTTG
GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC	GATTTTAGTTTCACCGAAACCTTTAGTTACTTCGAT
GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC	CGAGGAAGTTGAATGCCACCTTTGGATTCCATTGTT
GTATTGAATTTGCCCAGATTAGATGGGATTAACAA

>CP032093|3|2|1357246-1357562|CRT
GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC	TTTTAAAGCAAGTGTAACGAATGTCATAAAACTCAT
GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC	CATGAAACTTCAATGTATCATCTAATAGCATTTG
GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC	GATTTTAGTTTCACCGAAACCTTTAGTTACTTCGAT
GTATTCGACGTGCCCAGATTAGATGGGATTAAGAC	CGAGGAAGTTGAATGCCACCTTTGGATTCCATTGTT
GTATTGAATTTGCCCAGATTAGATGGGATTAACAA

Protein	Signature genes	Signature genes Name	Protein_function
CP032093.1\|AXY00922.1\|1363754_1365530_+\|hypothetical-protein	cas10	cls000686_cas10_CAS-III	gnl\|CDD\|274208
CP032093.1\|AXY00916.1\|1357596_1358220_-\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00914.1\|1355426_1355939_-\|hypothetical-protein	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
CP032093.1\|AXY00910.1\|1349595_1350597_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226699
CP032093.1\|AXY00911.1\|1350589_1351573_-\|protein-phosphatase-2C-domain-containing-protein	unknown	unknown	gnl\|CDD\|379325
CP032093.1\|AXY00918.1\|1359250_1359547_+\|CRISPR-associated-protein-Csx16	csx16	pfam09652_csx16_CAS-I:CAS-III	gnl\|CDD\|370601
CP032093.1\|AXY00915.1\|1355926_1356943_-\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY02332.1\|1351551_1352160_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226696
CP032093.1\|AXY00917.1\|1358253_1359207_+\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00912.1\|1353554_1353836_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP032093.1\|AXY00925.1\|1366705_1367680_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131722
CP032093.1\|AXY00907.1\|1345538_1345820_+\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00908.1\|1345914_1346358_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
CP032093.1\|AXY00913.1\|1353849_1355472_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766
CP032093.1\|AXY00921.1\|1361750_1363466_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|274251
CP032093.1\|AXY00924.1\|1366098_1366509_+\|hypothetical-protein	csx10gr5	cls000748_csx10gr5_CAS-III-D	unknown
CP032093.1\|AXY00919.1\|1359701_1360925_-\|DUF1887-family-protein	csx1	pfam09002_csx1_CAS-III	gnl\|CDD\|312526
CP032093.1\|AXY00909.1\|1346469_1346655_-\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00920.1\|1361285_1361606_-\|DUF1232-domain-containing-protein	unknown	unknown	gnl\|CDD\|225876
CP032093.1\|AXY00923.1\|1365529_1366099_+\|hypothetical-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|377130

Protein	Function_ID	Function_description	E-value
CP032093.1\|AXY00922.1\|1363754_1365530_+\|hypothetical-protein	gnl\|CDD\|274208	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.	0.0053256
CP032093.1\|AXY00914.1\|1355426_1355939_-\|hypothetical-protein	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	8.73104e-46
CP032093.1\|AXY00910.1\|1349595_1350597_-\|hypothetical-protein	gnl\|CDD\|226699	COG4248, COG4248, Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only].	1.06923e-33
CP032093.1\|AXY00911.1\|1350589_1351573_-\|protein-phosphatase-2C-domain-containing-protein	gnl\|CDD\|379325	pfam13672, PP2C_2, Protein phosphatase 2C. Protein phosphatase 2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.	4.56267e-31
CP032093.1\|AXY00912.1\|1353554_1353836_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.7354e-24
CP032093.1\|AXY02332.1\|1351551_1352160_-\|VWA-domain-containing-protein	gnl\|CDD\|226696	COG4245, TerY, Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only].	2.13374e-51
CP032093.1\|AXY00918.1\|1359250_1359547_+\|CRISPR-associated-protein-Csx16	gnl\|CDD\|370601	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548). This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPRs (Clustered Regularly Interspaced Short Palindromic Repeats). In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas (CRISPR-associated) genes.	5.67352e-31
CP032093.1\|AXY00925.1\|1366705_1367680_+\|hypothetical-protein	gnl\|CDD\|131722	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family. CRISPR is a widespread repeat family in prokaryotes. At least 45 different protein families occur in prokaryotes only when these repeats are present. This family, a minor CRISPR-associated protein family, seems largely restricted to the Cyanobacteria. It belongs to the RAMP superfamily (pfam03787).	0.00201134
CP032093.1\|AXY00913.1\|1353849_1355472_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	5.85464e-89
CP032093.1\|AXY00908.1\|1345914_1346358_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.6861e-47
CP032093.1\|AXY00919.1\|1359701_1360925_-\|DUF1887-family-protein	gnl\|CDD\|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	7.51025e-38
CP032093.1\|AXY00921.1\|1361750_1363466_-\|radical-SAM-protein	gnl\|CDD\|274251	TIGR02668, moaA_archaeal, probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666). [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.58764e-27
CP032093.1\|AXY00920.1\|1361285_1361606_-\|DUF1232-domain-containing-protein	gnl\|CDD\|225876	COG3339, COG3339, Uncharacterized conserved protein [Function unknown].	6.26954e-17
CP032093.1\|AXY00923.1\|1365529_1366099_+\|hypothetical-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	6.55683e-18

>CP032093.1|AXY00915.1|1355926_1356943_-|hypothetical-protein
MEQSTQELTQAINQLAIALNQVTQCLQSIVNQSNSPQILEHVKPAEIIEKMDYLASQTSPLIHPSTSVQQLSPKSNVTNISALPEVVCNWFRKYHLGFVRFNRPAANTERSRQLSLHIARHYNDVERLMSLLNQWATGSRTLNLNLRNKAVEVITETTSVANQMNDIGFLQHYQYKRSPHCFLQVQSNGLPATQSYLKGKWFELAIEQQLIEMKRTISTLEWVSNPVIRTSKGQEREIDFIVSLGEQIFVVEASTSPWQKTATETISLANQLQLPIKHCLIVSPEHEPQLMKEFSELHGANILSFEQFSLWIDQQMEQPSPQNESDNVMIMDMESCVL
>CP032093.1|AXY00914.1|1355426_1355939_-|hypothetical-protein
MRIMNNATAVTELVTLQELHCAFHRVAENNGIAGTDGISIEQFELAKERYLSQLLNDLNHNSWQPKPYLRVNVPKKNGGERYLAIPCVRDRVVHTWLAQKISPIFESQFTRSSYGYRPHRSYMDAIQRVEFLRDSGYHWVVDADITAFLIILTTIYCNKKSQPHWLTHLM
>CP032093.1|AXY00913.1|1353849_1355472_-|CRISPR-associated-endonuclease-Cas1
MQQKVSTALANSPYVNLVNQAITAQQQNLDNELSFGSSVGVGIPQGSPLSPLLANLFLNELDIAMLDSGYEIVRYADDFVVHCKTEQVARLALEEVNLILERSHLELNQEKTKVTNFDLGFHFLGVHFIDQLTLPESLHTDRCWHNLKPNVTSPPDIDNEIDLTITLPKNYWLDSVPNHLVHLNDCIEDELEPQQQTLDKTSASISQIAKLRTLYVQKQGAVMSMRNGQIRVSHKGQELQCFPAATIDTIWLFGNVHPTIAVIKHCLTHAIPIILLSQAGQRCGAFGFETQNNPELLQAQVFEQSDSARCLKHVRFFISQKLNNQLQLLKRWNKQGLPLDPTCINGLINARNSVAECNHIDQLRGYEGIGARFYFQQWKTWSQHTWHFSGRNRRPPKDPINVLLSFGYQLLFNNIQVILEVRGISPLFGYLHKQANGFPSLVLDLMEPWRPLVVDEVVLKLILRQTLKASDFVQTDQGCILLERGKKIFVQAFEQRMQQRFTHPDLKIKTDLRRFIDLQVLELRQLLLTKDGSLTPLRLR
>CP032093.1|AXY00912.1|1353554_1353836_-|CRISPR-associated-endonuclease-Cas2
MRHIFLVCYDISDNKTRRYVEKALLNHGVRVQYSVFECMLTLQQLHRLRYSLRQKIDPITDAVHYFHLCKHCKAKRFAQGSGQIHTYKSYELV
>CP032093.1|AXY02332.1|1351551_1352160_-|VWA-domain-containing-protein
MLVMDASSSMSGAPNQELNLGLSQFVEEVQADEMASCSVEAGVISFGHNVELVQPMMTVDDIEVLPKIDAYGMTPMGEAVNLAIDKLEARKHEYKQSGVSYYQPWLVLMTDGEPNDDWKAAAQRLKQLAQNQKMVVLCVGIGDAADMQILQEFSVLEPKKLKGLEFRAFFRWLSASMQRVSQSIPGDKVALPSTSGWDAISV
>CP032093.1|AXY00911.1|1350589_1351573_-|protein-phosphatase-2C-domain-containing-protein
MGRNQRLTLCDSNNKRNNKPLYDLLLRSATSFGDCTVSHYVPLLPYSDPQVPFSTSASNWTYAAQSVVGYRHIESSLPCQDACCSQANLRPIAILCDGAGSAKLSHLGSQGLTAGLLRLCSTLEPLLMSMLDTQDTPNKSDQALFGNLLARHSKGIIKDLATTYQQQAKEFRSTLLMAVVGRYRSLWLQVGDGFILTRNKRSHEWTVLTPPAKGEFANQTCFVDASLSLNQVQSGWLENQFDAVMLLSDGSAEKLVDNRSHTPANKACNSLLSWLEDDKSANKNLHYFLSDPKIWCRSTGDDKSIALLGYQEAKQHTPPFIEEARYV
>CP032093.1|AXY00910.1|1349595_1350597_-|hypothetical-protein
MFNLSNDNSTVLQTVFDFNGESRQLGKELARGGEGCVYPLSINCKILTKIYHSDYLGDKERMDKINAMIKLYKSTPSLSKLPVAWPQLAVFDEQRIWQGYAMKAADGIKLSVFKVPKLVRKYFPEINRTDVIEILQSLLKTAEQLHSHGIYMGDINLDNFLVEPQTKLVSFIDCDSYQVSIQGQHFPCPVGTDSMIPPEHQGQNLSSVVRNVYSDTFSLTIICFMLLMSGRHPYEHIGGESISHNIRIGHFPWGQSIRPGSNGAVPVGPWYNWWSHLSGTLKGAFIQTFTAGSSNVSERVPLSELRKLLSQYKYSIEKGYLSNEMWPNQAKNK
>CP032093.1|AXY00909.1|1346469_1346655_-|hypothetical-protein
MFYTKQHMILVFAFVAMIYAMCSRKLTAAGTKLSTNTDVHVFVRTSILKKRHKITTAFYIN
>CP032093.1|AXY00908.1|1345914_1346358_+|GGDEF-domain-containing-protein
MTLCRNRQYIESRMQKRGYWQHVQQSGHSLIVFDIDHFKHVNDTYGHLEGDRTLAQVASIVRRCLRESDEFIRWGGDEFIVLFDIKAHEAVHIANRMREIVKQETMVSLSIGVTDILIDDSYTSAMGRADCALYEAKQSGRNQVKVR
>CP032093.1|AXY00907.1|1345538_1345820_+|hypothetical-protein
MDEQVSVLFLTKDGEVRLPKKNKGESIFTLFKSISSEQFEAAKMQDRIVYTYSLNKSELLYIHYFKDINRMLLIKMDITDYYVQSIKQHIYSF
>CP032093.1|AXY00916.1|1357596_1358220_-|hypothetical-protein
MGASYREQANAKDKHKFVIAYKKHLTLYSDLLNIERHAMTHILTLNTQENMTRYQTQVWKILSDSYQTVSGGLHYTSPKALIEESDQWQILVKDGIVLAVTVYKAKQGWKLVAMGIHHQYIPQAKSALAILIKSALNHSWMELSEGAERFVMKHCDGHKYMIHISIANKLLGKFIEPSTTSQYHYKRKIMDKVKTKILLGSPMMTFT
>CP032093.1|AXY00917.1|1358253_1359207_+|hypothetical-protein
MCKQSSLSKYQKQIVKELTGLMGVNIPFTYEKAQNNHLKVLIDGIEKPLYTGSTPSDRNSAKNFIAQVKRAIKDMALDVNEELEAAKRAIPFENVQNKEVDKMVECCIKSLRTRKESLKKKETDYLLEQGDLDLLHPYRSEVVKLTLEHAMKQRKQLGYFRPKQKKELEKSVRKHLDFIMPNKADYSDLLACQHTERDSQTVQQSYLEASNVVMLDTTNQGSSPVVQRQSASHEEAVTKLELTDQAQHGNIALQLMNIAKGKRVDMLRDLSHDHIIQLLADIEQAKELNIRCAIADIKQLVKVNDVPLERLFDALNR
>CP032093.1|AXY00918.1|1359250_1359547_+|CRISPR-associated-protein-Csx16
MKTYFVTRHPATKAWAKDRQMKIDHWLEHISDLTLFNPGDVVYGTLPIQMAAQLCKQGVRYGHFTLIVPPHLRGLEFSAEQLQSCQPKIEFFEVMKVG
>CP032093.1|AXY00919.1|1359701_1360925_-|DUF1887-family-protein
MRIKNLLREITVTIHINLLSAQMIPNIIPILAMKESVQKVYIVIAGSEFDSKSAHLKQFYYNNGIEDVKEFYCPDANDYYSLRHKAKELFDDIQALHPGQQIILNATCGTKPMSFAFVRQFDKPEDNCLAIYVASNSNQIIFLSDSDKLTNVDTRSVMTINDYLYLNMFKLYQKTDMSCDDDVTYRAGISKSILKLASDYPKLVSLVNHLAQESNFNHASQFQPVVSLLMRPQGTVEELFNILKYADLIQYTDTSITFNSPEVSRYLGGGWFEELIYLAAKEAQVEEVALNVTGNLINRDGNESSVKNELDVVLLHNNHMMIIEAKTANWENQIKAGQEAMSKLDSLSQYYGGSDTKALIATIYPLPDAVQQRVESMRHISALRVETYEQLVERFKDWKLQCSRKIG
>CP032093.1|AXY00920.1|1361285_1361606_-|DUF1232-domain-containing-protein
MTYSEPSTSDFWEKITHGFKKMGGEVAILAITLWLVMTDPKTPISIKITIGSALAYLIMPVDMIPDFIPVTGYADDLAALSAAATAAGTSITEEHKTQAREKWEAL
>CP032093.1|AXY00921.1|1361750_1363466_-|radical-SAM-protein
MSFNISSPFMGLDYSIHTDQSTAKLALHACDGDILSPLVKIELTLAESGIKTIVITNTPLATKQQVRLKKLNYHLTHDQNYQKAVTYRKSVRFSVTEKCNYHCFFCHEEGMEMEVKRETSSNETFFDVIKQLAELNYDDFTFTGGEPLLNWRTVDACMSYMETINYLPEVTIVTNGERLNPRMLERLSSYPGKVRLNLSLHSFLDDEYLEIVHRKKKPGFGSDTLLDTIKQKMVMLNEANIPFKLNVVLLKDINTSHQSLSAILKYAAEYNATSVKFLELLITEKLRNFYPYFYTLDSVKQTLKDELTLVWQNQKKDVYQYQDTSLEVELQHCPCARGCNTCLLNRGVTFTAEMKFFPCFLNPQDNYALSDNNLAECVEKGDDYIEIMAKHYQDNSPILIRESYSTKREQAYFYVINSSDKQSISRLLKGRLTRIRTFNEQYFSKPEQPRYEICKLATNTHEEHAYSLEVKQRIDADTQGLHISEFLHEGIKVYDRQCYLDAMLKEGFEQSHTLDWEIEYYATKNESFSISANKQTGLLFLRTQAPFELLSIKSEPVTVPLPVYIQSLLTS
>CP032093.1|AXY00922.1|1363754_1365530_+|hypothetical-protein
MIYVYLFEAKSIQKFLFNSGKLKDVISASERLDRLIDTSKNSILAQVLHSARLESDLFDANMANQPGLIRFLRCKGGAFYAYCEQPEPLQKLRSLWTLTVSQLFPSLTVTDALEQAETLIQAMDKGHKALAASRNAPQLSFPIAPAIAERYSRTGNASVPLGDLAKRATHAQESQDDSLDFETEKHRQAYQSFDLRDAAALQDRFTPESHIGEIYYPIDFEKEFDFDGSKESLIKSKREAIKDMALIHIDGNGLGLLLMALKTELSADDVDNYRNGFRTFSEALNVATEKAAKQSTQELLETIKPETRDNKGRFTLPMRPVVLGGDDVTLFCRADLALQYSRTFCKHFKLESEQALKPLFEHFLPKSTDLLPYITASGGVLFHKASHPFMQSHHLVEALCDQAKTLTKSIYGTGKVGPAALAMYRVSNATQLSFGEITETSSVHHRVEMGMQSYFVEEEAEEQTHKRNFGLLGKLCALSMEKDAPVSIAKWRQMATHIALDDMEEAKRIYHRCIEQCKNEQAKAQLSELLKRFVPEESTQKSTAPWCWTVEKENQYGEQESAQQTFINDLLIFAHYQPAKTVNLPDCRENI
>CP032093.1|AXY00923.1|1365529_1366099_+|hypothetical-protein
MTIKLTLQFDIQSHWHIGSGNEGGAYADALALKDEQGLPYIPGRSVKGLLREAMTLACENQWFEDDKLTHLFGEEGNNAFTQGKISVSNASFSAAEKVYFGQQKGAKKHLYQVVHSTAIEHTTGVAKNTSLRSLEVVIPLTLSAQVMVNGTKEDAQAIMEVLPLITHLGAKRHRGLGQVFVTASTEGAN
>CP032093.1|AXY00924.1|1366098_1366509_+|hypothetical-protein
MRFYYILKTLEPVIVSKTTATTTNHQALDHISGSAVLGLVASDIYPQKAHDSDLTWSLFHSGEVQFGPCYPLIDGELSLPTPASWHFEKGEKVVNKGRYQGEKITNHANFERQAGCNISSAAMVLLRAKVKRVKLN
>CP032093.1|AXY00925.1|1366705_1367680_+|hypothetical-protein
MVEINETQLSITNEKAEADKKPVAKQPLILWCLSDCEIINQQGLPTFTPQLADLALGGELGELSGRLNTEKSFIRTTSVSRFNQARAGIDSEQVLIAKGSVLVFDDVPMTPQQLELLENKGIGINRQQGLGWVKVNPAWAFETQLSSQLFPSLMFDTQSDKKVLKPANSPLTRWLDEKLSAEQSNQGVNKDVMCLIEAILQAYTKLRSYNHISIRQNAGPSHAQWGRVREAVKSDKHNWQAKLFDKHNVKTSKAICKSVNDEFGWGICWYEEQGEVNFTEFSQALFKDATNQTMMLAIEKLSRYELCNQRELARAKSELLGEKA

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Crispr_ID: CP032093_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032093_4

1374268-1374730

TypeIII

Consensus_repeat	Method
GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC	PILER-CR
GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC	CRISPRCasFinder
GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC	CRT

6 spacers

csx1,cas6,csm3gr7,csx10gr5

The CRISPR arrays of CP032093_4

>merge|CP032093|4|1374268-1374730|PILER-CR,CRISPRCasFinder,CRT
GTATCAGACGTGCCCAGATTAGATGGGATTAAGACGAGACATCAATTGTCCCATGACTCACAATCTTAAACAGTATCAGACGTGCCCAGATTAGATGGGATTAAGACTTTGTAAACGACGCATTTCTTTTCGGAACACACCAAATGTATCAGACGTGCCCAGATTAGATGGGATTAAGACCTGAGTTCATTATATTTCCTTACATTTCTTCTGCGATGTATCAGGCGTGCCCAGATTAGATGGGATTAAGACGACACTATTGATAGCACCCCACAGTAGGCGACGCTCAGTATCAGACGTGCCCAGATTAGATGGGATTAAGACAGAGATAGTCATCTCTGCTTTGATAGTATCAGCCGTATCAGACGTGCCCAGATTAGATGGGATTAAGACGTTTCATGCGACATCATAGTTAGATCAGTCATTACGTATCAGACGTGCCAAGATTAGATGGGATTTTCCT

>CP032093|4|3|1374268-1374660|PILER-CR
GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC	GAGACATCAATTGTCCCATGACTCACAATCTTAAACA
GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC	TTTGTAAACGACGCATTTCTTTTCGGAACACACCAAAT
GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC	CTGAGTTCATTATATTTCCTTACATTTCTTCTGCGAT
GTATCAGGCGTGCCCAGATTAGATGGGATTAAGAC	GACACTATTGATAGCACCCCACAGTAGGCGACGCTCA
GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC	AGAGATAGTCATCTCTGCTTTGATAGTATCAGCC
GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC

>CP032093|4|4|1374268-1374730|CRISPRCasFinder
GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC	GAGACATCAATTGTCCCATGACTCACAATCTTAAACA
GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC	TTTGTAAACGACGCATTTCTTTTCGGAACACACCAAAT
GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC	CTGAGTTCATTATATTTCCTTACATTTCTTCTGCGAT
GTATCAGGCGTGCCCAGATTAGATGGGATTAAGAC	GACACTATTGATAGCACCCCACAGTAGGCGACGCTCA
GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC	AGAGATAGTCATCTCTGCTTTGATAGTATCAGCC
GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC	GTTTCATGCGACATCATAGTTAGATCAGTCATTAC
GTATCAGACGTGCCAAGATTAGATGGGATTTTCCT

>CP032093|4|3|1374268-1374730|CRT
GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC	GAGACATCAATTGTCCCATGACTCACAATCTTAAACA
GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC	TTTGTAAACGACGCATTTCTTTTCGGAACACACCAAAT
GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC	CTGAGTTCATTATATTTCCTTACATTTCTTCTGCGAT
GTATCAGGCGTGCCCAGATTAGATGGGATTAAGAC	GACACTATTGATAGCACCCCACAGTAGGCGACGCTCA
GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC	AGAGATAGTCATCTCTGCTTTGATAGTATCAGCC
GTATCAGACGTGCCCAGATTAGATGGGATTAAGAC	GTTTCATGCGACATCATAGTTAGATCAGTCATTAC
GTATCAGACGTGCCAAGATTAGATGGGATTTTCCT

Protein	Signature genes	Signature genes Name	Protein_function
CP032093.1\|AXY00932.1\|1372701_1373706_+\|TIGR02584-family-CRISPR-associated-protein	csx1	pfam09623_csx1_CAS-III	gnl\|CDD\|187872
CP032093.1\|AXY00927.1\|1369058_1369571_+\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00933.1\|1373840_1374035_-\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00936.1\|1377109_1377784_-\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00931.1\|1371704_1372610_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|337605
CP032093.1\|AXY00942.1\|1383518_1383848_+\|NfeD-family-protein	unknown	unknown	gnl\|CDD\|224501
CP032093.1\|AXY00935.1\|1375594_1376554_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|226124
CP032093.1\|AXY00925.1\|1366705_1367680_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131722
CP032093.1\|AXY00943.1\|1383999_1384206_+\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00939.1\|1381718_1381949_+\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00940.1\|1382053_1382242_-\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00938.1\|1379218_1381438_-\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00924.1\|1366098_1366509_+\|hypothetical-protein	csx10gr5	cls000748_csx10gr5_CAS-III-D	unknown
CP032093.1\|AXY00934.1\|1374883_1375582_+\|GTP-binding-protein-HSR1	unknown	unknown	gnl\|CDD\|226124
CP032093.1\|AXY00928.1\|1369570_1369756_+\|hypothetical-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
CP032093.1\|AXY00930.1\|1370143_1371700_+\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
CP032093.1\|AXY00941.1\|1382687_1383365_+\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00926.1\|1367679_1369059_+\|hypothetical-protein	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
CP032093.1\|AXY00929.1\|1369692_1370202_+\|hypothetical-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
CP032093.1\|AXY00937.1\|1377848_1379237_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271189

Protein	Function_ID	Function_description	E-value
CP032093.1\|AXY00932.1\|1372701_1373706_+\|TIGR02584-family-CRISPR-associated-protein	gnl\|CDD\|187872	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as NE0113 family.	3.87419e-69
CP032093.1\|AXY00937.1\|1377848_1379237_-\|hypothetical-protein	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	0.000120541
CP032093.1\|AXY00942.1\|1383518_1383848_+\|NfeD-family-protein	gnl\|CDD\|224501	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	0.00502371
CP032093.1\|AXY00931.1\|1371704_1372610_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	7.31717e-05
CP032093.1\|AXY00934.1\|1374883_1375582_+\|GTP-binding-protein-HSR1	gnl\|CDD\|226124	COG3596, COG3596, Predicted GTPase [General function prediction only].	7.90264e-47
CP032093.1\|AXY00928.1\|1369570_1369756_+\|hypothetical-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	4.89391e-12
CP032093.1\|AXY00930.1\|1370143_1371700_+\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	7.15844e-55
CP032093.1\|AXY00935.1\|1375594_1376554_+\|GTP-binding-protein	gnl\|CDD\|226124	COG3596, COG3596, Predicted GTPase [General function prediction only].	8.83197e-61
CP032093.1\|AXY00926.1\|1367679_1369059_+\|hypothetical-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	4.40018e-14
CP032093.1\|AXY00929.1\|1369692_1370202_+\|hypothetical-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	2.24524e-22
CP032093.1\|AXY00925.1\|1366705_1367680_+\|hypothetical-protein	gnl\|CDD\|131722	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family. CRISPR is a widespread repeat family in prokaryotes. At least 45 different protein families occur in prokaryotes only when these repeats are present. This family, a minor CRISPR-associated protein family, seems largely restricted to the Cyanobacteria. It belongs to the RAMP superfamily (pfam03787).	0.00201134

>CP032093.1|AXY00933.1|1373840_1374035_-|hypothetical-protein
MRELAHRDEYKNLVQGAYLLCKMDIIWKYFQAFALNWAFITIVFLKFRDRFNDIVICQFLPRTR
>CP032093.1|AXY00932.1|1372701_1373706_+|TIGR02584-family-CRISPR-associated-protein
MTTPSKHLLLAVSGMTPQIITETLYAIHKKSPEKMPTEVIVLTTATGCERIEKALMGEDNQLDQFCIDYGYQPIKLEIRIPEIGGITLADVRTDSEQEATADFITDQVRKLTQDDSVAIHASLAGGRKTMGFTLGYAMSLFGRPQDCLSHVLVNEPYDQVPDFFYPTQTTVYRFDRDKKNRLDLSKAEVTLGEIPLVLMREGLPNDLIAKENTSYTQVVKHANQANALNTETVVVTLDKDQLTIYCNDMPVKLSAEQFAFYAWMARDTQDAFGEGIEPVNNDMSAHELTKRLRSWLISSLPEVSGVDYTAFELPDLIDEADFPAFKLNVSTLKC
>CP032093.1|AXY00931.1|1371704_1372610_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MVRKAMMTQELQLLTNQFQLLKLHLTVQLKQGTTLPAFKGAMWHGLLGESLKAHSEQCYQVFYGAHDEQQPKPYAIAPDGDHKTQWHKEELLNLELTLFGDACQLAQHVIDAMSSASLNSNLGIGEKRAAFKLLSVSSATPSGLRVGLHTFSLADWMRELPHYTLQQEVALSFITPVRAKYQNKVLRNQAPELDFWVNQCLRRLTQLSRFWVLDDQTLFDAIYAQTLSAIPQDLDWQSDCYFEDWVRYSTRHEKKIPIGGLKGQVACYGDVHALLPILKVGELLQVGGKTTFGLGKYRLMV
>CP032093.1|AXY00930.1|1370143_1371700_+|TIGR03986-family-CRISPR-associated-RAMP-protein
MVGRKTCVQGAKKRHFVFTNTRILGRGDKNTYNFSYFFFDRQSSVFSDNIQQQVQNLFDNHRSVTESVNGQAYDQVQYLQKHAHHEYGIPVFALMMQGKVHSFGFANMPRVSYKHSSRDLVDNLAKEHNEDSYFSLTDLMFGTLREDALGLKSRVMFSDAVLTSKEGSIISKSVVLSSPKPSFLGAYIEQPDAEQYASYGYHNEKETAKLAGWKRYPVKREFTENEPPNDNSNVQTKLEMLTENHEFSGRIVFHNLKCDELGGLIWVLTLNGSHEHYHTLGHAKSLGAGAVQFELSLDENTLYSNNGQPVDCNPLSWVERFVAHMDSQMVKGEWLKTPQIKHLLALADGYISDENDFSTHGLSEFQRIKNDKSSIEPLSYNGSILSRTDNAPERLGSLAFGKGRLSRLVDIESNVLHQTFAELSQSKQDIMEKKQKKQALAQAAEALQDAPPYERSLGLLQNIVEEQDGSTASFKKDKAKEIRTIAKDLKEAILTSEEVGTLLAVVKQISIAEKDIQN
>CP032093.1|AXY00929.1|1369692_1370202_+|hypothetical-protein
MQIKNKTELCVGSTKDGNNVLKFARDPQGNPIIPGSSLKGMIRNVLDIASFGKLEQMDDFKLSYRDISSKSAYLDLIDKHKPVAGWIKYDAVTQKWAFYQCQCAKVHHDEIKAKLGLIIKNEDSAIRRYNQLPLSTSVMADISAPKGIKKNRWAENLRSGSKEASFCFY
>CP032093.1|AXY00928.1|1369570_1369756_+|hypothetical-protein
MSSVHAPYHFVPLSKWVYMPDWAHLVSHDHPFEDGHSGVIEYKLKIKQNYALAALKMEIMF
>CP032093.1|AXY00927.1|1369058_1369571_+|hypothetical-protein
MSSLTQYRELTKNAQAKDKLGVALPDLTRAKVNVITQQYDVSDLQAVVEVFAPDAGWVVYRDGVEITNQAPNRSDVIEAEYYCQAADVQSIKIKHLFAKQYLVTRFEVIDEESDEYCYSEQAVIVRKNLAEQAQTAHYRLWYKQDDAFRWNPFAQQFIGFNAAGEQKENK
>CP032093.1|AXY00926.1|1367679_1369059_+|hypothetical-protein
MGNTQITLTKLVIETQSPMAISTGQRETGFDTQLARDVNGLPTIPATAIAGVWSHLVETHLGEQTKKAWFGFTDSKNAKVSALTISDAKLLNSRGKTMANFTPAAEMENDPLLALCLNTNPLHRERVAINDRGVTCETGKFDQILIPKGVRFALTLQWTNQRDASLTQTGWHELLALWADPTFAFGSSTRNGLGRIKVVHSDEHVFELQNNAQGAQQFADYRKSSVEPTHKLAQVFTELETNVETYSIKLRALDNWRSGSGSELLTDASKLPEKSVNIITYSEKSVVWGLQNQASISNAKPMLCGSSIKGILAHRIAFHYRKHQKRWAETMDNASHDEWQQRPEELKALLGIAAENHEDSLAGALWVEDAELHYTDTVIRHHNSIDRFTGGVRKGALYSEELLHKPRFEVRLHLSKEIEDEVLKKAFEDTLQDLELGLLPMGAGSGRGTSLVVKDEEAA
>CP032093.1|AXY00925.1|1366705_1367680_+|hypothetical-protein
MVEINETQLSITNEKAEADKKPVAKQPLILWCLSDCEIINQQGLPTFTPQLADLALGGELGELSGRLNTEKSFIRTTSVSRFNQARAGIDSEQVLIAKGSVLVFDDVPMTPQQLELLENKGIGINRQQGLGWVKVNPAWAFETQLSSQLFPSLMFDTQSDKKVLKPANSPLTRWLDEKLSAEQSNQGVNKDVMCLIEAILQAYTKLRSYNHISIRQNAGPSHAQWGRVREAVKSDKHNWQAKLFDKHNVKTSKAICKSVNDEFGWGICWYEEQGEVNFTEFSQALFKDATNQTMMLAIEKLSRYELCNQRELARAKSELLGEKA
>CP032093.1|AXY00924.1|1366098_1366509_+|hypothetical-protein
MRFYYILKTLEPVIVSKTTATTTNHQALDHISGSAVLGLVASDIYPQKAHDSDLTWSLFHSGEVQFGPCYPLIDGELSLPTPASWHFEKGEKVVNKGRYQGEKITNHANFERQAGCNISSAAMVLLRAKVKRVKLN
>CP032093.1|AXY00934.1|1374883_1375582_+|GTP-binding-protein-HSR1
MSINAQTYRSRDISARLDDAKLPVLDVMFTGVTGAGKSSTINALFGSNKVLVGHGVDPMTMELDAYYLQNAFRVWDTPGLGDGAEQDRTHERKLIDLLFKTWSADGETYGFIDMVIVIIEGINRDMGTTYRLLRNTILPCINANRVVVAINQADVAQKGRGWDHKTNTPTVQLTEFLEQQALSIQRRIKESCGITINKPIYFSAEHRYNLDKLMDAIIVAMPSNRRQITASE
>CP032093.1|AXY00935.1|1375594_1376554_+|GTP-binding-protein
MQDSQKMLEALKLQIQTMYFEHEQDKQTMLSNILKIQQQHVNILIVGPTGVGKSSTINALFKCDKAVVGRGVDPETMHIAKYELENITFYDSPGLGDGIEQDNRHAQGIVELLCKLDVNGEPLIDLVLVLLDGGSRDYGTTYQLLKNVIVPTLDQERYGRILVAINQADMAMKGRGWDYVLNSPMPELKEFLDAKVASTAKRIKESTGVDMTPIYYSAGYQDKSGKQQPYNMAKLLLFIVQHMPKHKRFSLSGEVRPDPDIYAADENSKGHLEQTKASFLDSLVSAVRNGVSVVADVVTEVVSNVVSKAVSFFRSLLPW
>CP032093.1|AXY00936.1|1377109_1377784_-|hypothetical-protein
MTETQITLAIPLSDFYAALGTTKSELSRGEMSAVELVLQKSLGRALIDLKYRIQDGTTLVLLLDTRKLPETIDSLDSLIEHIYEWKDHMIDVTSECSETHRYAEKRRARAGLKNLSRIGDIVAKQYYEELNLCYKEREAIVFHCITRIELIYDSEQSHRLLAIRFTYEGQQIQCAVTQMQNQDAAPILDAFCQGAFHHLTVHAIADITKLGCYLNVTLVALEQG
>CP032093.1|AXY00937.1|1377848_1379237_-|hypothetical-protein
MQQCILTDGLNTQTKESMQAAIRGIFTCLGDENFQLPSGAKSKVKPQNKELVWPHQYRRLLHWITLQTSLGEADHLLYTCAAILMYKGGLRPNELCLLTADSISSSGETIRITSQNGYRAKSVKGNRVVMMAHNLTDVEQNQLQQLRSLLQKTVGLPPLFARVNVELLSFGLKTLTGNSNLSAYALRRSYANFHYLLVMDVHLPVLEVYFGRSIVIARAQLVADWCLRGYEDEAILKALSVSLGHANIATTMKYYICTLPIVRFYHNSQAQCLSQRTIAALLTIPLSTYRARAKTHPSGLPIGSLKILDTRHHSPLVTPLISSSTYNDTLVSQALGWLVKLTNSKEMDFRQALEREARCVELNLKQTEFLLAKAPTHQWLTFLERLPNSTRWQIYEAWLSRVQPRGRLREPVRVIEFVQFMQALGWEYRVREGKYVQIGQMKNRNGHIAAALCVMQSISLKT
>CP032093.1|AXY00938.1|1379218_1381438_-|hypothetical-protein
MTSTIYDENRIRPEFVFANHNLFTYPTRDEERAFQQHLWHSVGSKPEREQRFIAGCALMLITGRGPNESLCLSWDTQADEHVNLSTERYVKKYLLPSGAAKPIRSSFLYDTDQHLELPIPAFISRILRNCSQLKNRQHFCLSELLPPSWPTLWQKLYELMPMQLLPKRRGHAFFHCWLSMALTELSDKEVAFALTGHSGFSSQHHLYYVTLEKQQLINVWCDAMTRIFGQLLHVPEDVVGYVGSPLLIRPRMIAEHFSSHYETFPVNERWQGYSKAKLIDCFNAITIEAYVALATNFALRRPAPEVLESVLSDTNKPWVTVLDKNVDKLHPERNLPMSNITRAVVMQLSEVREFLRARWHIDIPQKGLFLLDSLTKQARPLSRIDINAVLFDGEHLPSNVFRHAMASLLRTHNAGRWGVTLLGHRPDKAHLPNKDILASCAEPNMIAAIEHIQRNEFGLQHRALNSSIPLSQMLPILVKQARWEDALALQLAFNLPRPILNKLTQYTTHIESHQGFHHLIVNDSFLDFLTDEQLALFNQVPSSRWQAAAKRAKSYALSPQQTSIGDRMWAHVQAYSSTNNFLSEACLTSWFSELPPLLPNQLKQYQSIIHKPMAPSLKRIKLLVDKLASHQHTAPEQIFQQHLLSIFSVINNRPNSTTELLNLVDIQLNNIEGAIYHYMYKKMVARKRNYARNIAGNTWRTEYGKVYKRMIDLMGSETNVSLLSEDILSAYYQKCSNAY
>CP032093.1|AXY00939.1|1381718_1381949_+|hypothetical-protein
MAEWLYEKYQCDFVLLFNHRRDGFTLSLRSKKGSGTVVDEIACRFNGNGHEHAAGCFVASLDSIGTKLDDPLVELV
>CP032093.1|AXY00940.1|1382053_1382242_-|hypothetical-protein
MGDIIVSIGRGIMNVISAIFIIWFSPALLLKKLELDFLANVLGVILLVLGLTFFQFVIRPTF
>CP032093.1|AXY00941.1|1382687_1383365_+|hypothetical-protein
MFDTLIDHLDDYVESLTELWFFHIPGPLLVYYFALSTAEKADVSWLCFPIIMLTTPVFISLWDRKVLPLLIIAPILFGIGYAFLGGPEFSSFYFLCLKWIGITVVGCVAILVLRQVYMFTAWLVRKVLSVTIFYNWFTMLISAVVAYQIGKYAWNTYGDTINFIMLLAVPFVIAILFFTGGSDLTLRSWMSVFEHKRDGMSTPEALDKAEMEQRTREAFWSLFKK
>CP032093.1|AXY00942.1|1383518_1383848_+|NfeD-family-protein
MVATLVELGVIPDQVVEILIAITVSTALVSFVLYPFLKRLQNARPTSEVESDFANIEFVLESATEQGEPPRYHYSGIDWRLRSEEPIVAGIKVRVVKKEVGVFWIEPVA
>CP032093.1|AXY00943.1|1383999_1384206_+|hypothetical-protein
MESEGSKWQNIALTNRNLIVGIINLGNLATDRIAQSLEQKCGYVNQAELWERVISYLGRSYQLSARLG

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Crispr_ID: CP032093_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032093_5

1442124-1442502

TypeIII

Consensus_repeat	Method
TCAACAGCCTATGCGGCTTCATATCTTGCGAC	CRISPRCasFinder
TCAACAGCCTATGCGGCTTCATATCTTGCGAC	CRT
GTTTCAACAGCCTATGCGGCTTCATATCTTGCGAC	PILER-CR

5 spacers

csx1,cas2,cas1,csm3gr7,csm4gr5,cas10

The CRISPR arrays of CP032093_5

>merge|CP032093|5|1442124-1442502|CRISPRCasFinder,CRT,PILER-CR
TTAACTGCCTAAAAATCCTCATGTCTTGCGACCTATCAAACTTAAGCCGCAACTAGCTATCAAAATGTCTCAACAGCCTATGCGGCTTCATATCTTGCGACACTAAAGAGGAAAATCCTATGAAAATGCTTAAGGTCTCAACAGCCTATGCGGCTTCATATCTTGCGACTTGTTATGTCACAAATGCAAATCCCATGGGAAGCGCGTTTCAACAGCCTATGCGGCTTCATATCTTGCGACAATTAGCAAACTTTTCCGAAGATGTTCAATGCGCCAGTTTCAACAGCCTATGCGGCTTCATATCTTGCGACACCTTATGGAGATATTATCTATGTATACATCAGGTTTCAACAGCCTATGCGGCTTCATATCTTGCGAC

>CP032093|5|5|1442124-1442502|CRISPRCasFinder
TTAACTGCCTAAAAATCCTCATGTCTTGCGAC	CTATCAAACTTAAGCCGCAACTAGCTATCAAAATGTC
TCAACAGCCTATGCGGCTTCATATCTTGCGAC	ACTAAAGAGGAAAATCCTATGAAAATGCTTAAGGTC
TCAACAGCCTATGCGGCTTCATATCTTGCGAC	TTGTTATGTCACAAATGCAAATCCCATGGGAAGCGCGTT
TCAACAGCCTATGCGGCTTCATATCTTGCGAC	AATTAGCAAACTTTTCCGAAGATGTTCAATGCGCCAGTT
TCAACAGCCTATGCGGCTTCATATCTTGCGAC	ACCTTATGGAGATATTATCTATGTATACATCAGGTT
TCAACAGCCTATGCGGCTTCATATCTTGCGAC

>CP032093|5|4|1442124-1442502|CRT
TTAACTGCCTAAAAATCCTCATGTCTTGCGAC	CTATCAAACTTAAGCCGCAACTAGCTATCAAAATGTC
TCAACAGCCTATGCGGCTTCATATCTTGCGAC	ACTAAAGAGGAAAATCCTATGAAAATGCTTAAGGTC
TCAACAGCCTATGCGGCTTCATATCTTGCGAC	TTGTTATGTCACAAATGCAAATCCCATGGGAAGCGCGTT
TCAACAGCCTATGCGGCTTCATATCTTGCGAC	AATTAGCAAACTTTTCCGAAGATGTTCAATGCGCCAGTT
TCAACAGCCTATGCGGCTTCATATCTTGCGAC	ACCTTATGGAGATATTATCTATGTATACATCAGGTT
TCAACAGCCTATGCGGCTTCATATCTTGCGAC

>CP032093|5|4|1442190-1442502|PILER-CR
GTCTCAACAGCCTATGCGGCTTCATATCTTGCGAC	ACTAAAGAGGAAAATCCTATGAAAATGCTTAAG
GTCTCAACAGCCTATGCGGCTTCATATCTTGCGAC	TTGTTATGTCACAAATGCAAATCCCATGGGAAGCGC
GTTTCAACAGCCTATGCGGCTTCATATCTTGCGAC	AATTAGCAAACTTTTCCGAAGATGTTCAATGCGCCA
GTTTCAACAGCCTATGCGGCTTCATATCTTGCGAC	ACCTTATGGAGATATTATCTATGTATACATCAG
GTTTCAACAGCCTATGCGGCTTCATATCTTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
CP032093.1\|AXY00993.1\|1451205_1453056_-\|hypothetical-protein	csm4gr5	cls000259_csm4gr5_CAS-III-D	gnl\|CDD\|187857
CP032093.1\|AXY00994.1\|1453052_1454390_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	unknown
CP032093.1\|AXY00992.1\|1450398_1451202_-\|hypothetical-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	gnl\|CDD\|224256
CP032093.1\|AXY00983.1\|1439041_1440679_+\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00991.1\|1449737_1450427_-\|hypothetical-protein	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187857
CP032093.1\|AXY00984.1\|1440714_1441533_+\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00980.1\|1436722_1438171_+\|decarboxylating-NADP(+)-dependent-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236453
CP032093.1\|AXY00978.1\|1434463_1435969_+\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
CP032093.1\|AXY00976.1\|1431819_1433247_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
CP032093.1\|AXY00981.1\|1438256_1438463_-\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00977.1\|1433384_1433612_-\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00982.1\|1438713_1438938_-\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00990.1\|1448523_1449735_-\|hypothetical-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
CP032093.1\|AXY00986.1\|1442753_1443902_-\|DUF1887-family-protein	csx1	pfam09002_csx1_CAS-III	gnl\|CDD\|312526
CP032093.1\|AXY00985.1\|1441556_1442003_+\|hypothetical-protein	unknown	unknown	unknown
CP032093.1\|AXY00987.1\|1444236_1447053_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
CP032093.1\|AXY00989.1\|1447613_1448303_-\|hypothetical-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
CP032093.1\|AXY00988.1\|1447049_1447541_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374562
CP032093.1\|AXY00979.1\|1435965_1436682_+\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|376480
CP032093.1\|AXY02334.1\|1443964_1444240_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256

Protein	Function_ID	Function_description	E-value
CP032093.1\|AXY00993.1\|1451205_1453056_-\|hypothetical-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	4.94392e-05
CP032093.1\|AXY00992.1\|1450398_1451202_-\|hypothetical-protein	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.15646e-18
CP032093.1\|AXY00991.1\|1449737_1450427_-\|hypothetical-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	2.70438e-14
CP032093.1\|AXY00980.1\|1436722_1438171_+\|decarboxylating-NADP(+)-dependent-phosphogluconate-dehydrogenase	gnl\|CDD\|236453	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase.	0
CP032093.1\|AXY00978.1\|1434463_1435969_+\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
CP032093.1\|AXY00976.1\|1431819_1433247_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.13491e-41
CP032093.1\|AXY02334.1\|1443964_1444240_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	3.05665e-15
CP032093.1\|AXY00979.1\|1435965_1436682_+\|6-phosphogluconolactonase	gnl\|CDD\|376480	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase.	1.64356e-75
CP032093.1\|AXY00986.1\|1442753_1443902_-\|DUF1887-family-protein	gnl\|CDD\|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	1.19179e-43
CP032093.1\|AXY00990.1\|1448523_1449735_-\|hypothetical-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	4.36434e-22
CP032093.1\|AXY00989.1\|1447613_1448303_-\|hypothetical-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.16386e-11
CP032093.1\|AXY00987.1\|1444236_1447053_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.14379e-73
CP032093.1\|AXY00988.1\|1447049_1447541_-\|hypothetical-protein	gnl\|CDD\|374562	pfam16473, DUF5051, 3' exoribonuclease, RNase T-like. This is a highly divergent 3' exoribonuclease family. The proteins constitute a typical RNase fold, where the active site residues form a magnesium catalytic centre. The protein of the solved structure readily cleaves 3' overhangs in a time-dependent manner. It is similar to DEDD-type RNases and is an unusual ATP-binding protein that binds ATP and dATP. It forms a dimer in solution and both protomers in the asymmetric unit bind a magnesium ion through Asp-6 in UniProtKB:P9WJ73.	4.86619e-06

>CP032093.1|AXY00985.1|1441556_1442003_+|hypothetical-protein
MHFQALTAETFTRLMFWLAFATLVGTAYELYGGKASETETYWWVPLLFLYFVSAWLLHKKIVNGLVVLGQSRVEMESETPLRLGARIKQKIRKTIAKLGTCFRTSSKVYWSVMALGGGIGFVLFTDIELRSVTVQLTESMESLFRKVK
>CP032093.1|AXY00984.1|1440714_1441533_+|hypothetical-protein
MYTDKIRQLYPSFAERESDKQKGALAYFFGKASLFNQPLTNPEVNQQATPRTLNFEQLSKCHYDLPQDIEAIFAKLGIDKVCRLKPFIDNRMFINVAYGLAGDCKVNDMSKAKYEALFSLAAYVDDIDDSFSRLDGYAYDPEFVRALLDRQSYQRWRALGNLYAFTDYSNVYMGYGTEFNENIVPRHVFYNYQNMLLMGLFYRESLHDFSERISDVSKRIDIVSHQEFQTIREHFIRFTNVSWFQDLTSQLQGKEVYQKQLSGLNVQKNMSF
>CP032093.1|AXY00983.1|1439041_1440679_+|hypothetical-protein
MQLKFSLKKKTYKIQILGIEGGWDASLDSSPFFKINHQWLEQLSREKRQGVATYRNWNQLNTEQHEEVLSSIVICCVKPGQLTKALLQKKGVEIHQMGLQGTLLEDLAVWLGEDLLSIDKAHSIYYKDYLPGLSVQGVPLNSSSHIHAPFGPLSRNTNSTPSVDKIVLRTQIFSQDPITVSGDSPEIDNFRIDDFWRGVSQNKIKGKSREEKERVKSERDLCLYLVDEQSLTESDYTFSQYVAHFLDAVNYQHCMTHQPDGNDYISCSERHHSIRLPTSLVLFCHQGEENQNPFKRVEVIEFVTSNCDKQALEKLAMDPKLNGLAKVSVNSGQYTHYLCARIIHQPGTDSCTIVDYIVDNLMGVSLNGERPLVSYGSTFFLPFRQVHSKKNDTLSLKGGPFNYHNIIVASDEDVKTHQHRGMERFNLIANERDNFLYIDPVIRERLFRLEDGEMQRIEEWRADISPDDELTNACEKYIWSVIKTAPNRLSQCVSATVRSIKLYKFYNEVYILAVNVYEQFLMVNLHLLRMGMIGGMICLLPMSKH
>CP032093.1|AXY00982.1|1438713_1438938_-|hypothetical-protein
MLCIFALAHFFTSLFKVALSDGGVLHFDVELHALKFTQQLKNCHLDSKNDGNVKMITNVIIYELSIFAPTQRIA
>CP032093.1|AXY00981.1|1438256_1438463_-|hypothetical-protein
MKSTKLGRIMSFSRMFSFIAFLTATFAWVLDMHALFTVSVVALFVSAILYLNDKFGHHFKGNTREKSA
>CP032093.1|AXY00980.1|1436722_1438171_+|decarboxylating-NADP(+)-dependent-phosphogluconate-dehydrogenase
MKGDIGVIGLAVMGQNLILNMNDHGFKVVAHNRTAAKVDEFLEGPAKGTNIIGAYSLEELVEKLETPRKVMLMVRAGDVVDTFIDNLIPLLDEGDIIIDGGNTNYPDTNRRVAHCREKGIHFIGTGVSGGEEGARFGPSIMPGGAAEAWEAVKPIFQGISAKTDAGEPCCDWVGNDGAGHFVKMVHNGIEYGDMQLITEAYQFMKDGLGMSADEMQAVFADWNKTELDSYLVEITADILGYKDEDGEPLVEKILDTAGQKGTGKWTGINALDLGIPLTLISESVFSRCLSALKDQRVEAESLFGKTITPVEGDKQEWVDALRQALLASKIISYAQGFMLMREASNENGWDLNYGNVALMWRGGCIIRSAFLGNIRDAYEANPDIAFLGSDEYFKNILQGSLAAWRKVAAKSLESGIPMPCTISALSFLDGYTTARLPANLLQAQRDYFGAHTYERIDRPRGEFFHTNWTGTGGNTASTTYDV
>CP032093.1|AXY00979.1|1435965_1436682_+|6-phosphogluconolactonase
MINHKIYQTADQVVESLANDMKSFSEMGRPVHISLSGGSTPKMLFKLLATEAYATSIQWQNLHFWWGDERCVAPDDAESNFGEANALLFSQVGMPAENIHRIRGEDEPKAEAERFAKEMSDVIPSEDGTPVFDWILLGVGADGHTASLFPGQTNYDDENLSVLASHPESGQIRVSKTARVLEAAKRISYLVLGAGKADIVEEINSSPAQDLPYPAAKIQAKAGLTEWYLDLDAAAKIA
>CP032093.1|AXY00978.1|1434463_1435969_+|glucose-6-phosphate-dehydrogenase
MMVIPENSSIVIFGASGDLTYRKLIPALYHLYANKQLPSNFAILGVSRTEYSDLSYREKLKKSLQEMEKTEPETLNAFINHLHYQAINTSDTPDYSKLATRLDQLADEYQFEQRNTLFYLATPPSLYSVIPASLAAHGLNSEDDGWKRLIIEKPFGYDLESARTLDKDIHEHFQEHQIYRIDHYLGKETVQNLLVLRFSNAMFEPLWNRNFIDYVEITGAEFLGVEERGGYYDGSGAVRDMFQNHLLQVLAMVGMEPPAQINADSMRDEVVKVLQCLKPLDEDALRNDLVLGQYTASEVRGQQLPGYREENGVADDSRTETYIGLKAYINNWRWNGVPFYVRTGKRLPTRVTEVVIHFKQTPHPVFGQNAPENKLIIRIQPDEGIQMSFGLKEPGAGFKAKEVKMNFHYADLQETQMLTAYERLLLDALNGDATLFARSDAVEACWKYVQPILDFKQDPQALFGYACGTWGPKEADDLLQRANRAWRFPCKNLTDTDYCEL
>CP032093.1|AXY00977.1|1433384_1433612_-|hypothetical-protein
MERDTFGICLSKAMLSQNMYSTFTHVRAYEKNDTSPSDLKVLLSFPQMTGKDLLNTMRGSRQLEWRAEFHCPSIK
>CP032093.1|AXY00976.1|1431819_1433247_-|TolC-family-protein
MKPTGKLWVLGLLSSSISFACHSAPITFDNAWNLLLENNYSLKAQRANVESYQYQQDATGNLNLPQVSIGANYTRLDTDVTLSGQQIFDSTGQKISVPPELLPIVEPVFNTLASTTSTITERDIFTSSIRAIWPIFTGGRINAAQAAAQGKTDEAKSQLVMEQQARFEDLSKYYFSVVLAKEVLATRQAVEKGLTKHRNFAVKMEEQGQIARVERLQADASLDKAKVETRKAASDLTIAQAALGTILAQNESVEPSESLFINDRIPPLSAFVDQTLLTYPGLDLLDAKHKQASSLIKAEKGKYYPEVYLYGDYSLYEDDSLASQMKPDWMVGVGVNIPLIESTGRSEKVKAAQSMVTQVDALKSQAKQDLSLLVQKTYLEAQQAIDEVQGLESSIALANENLRLREKAFTQGLSSSLDVVDAQLYVASVETQQSAARFRYLISLTKLLALSSEMNSFAQYQHTAYTPKPTSKEAN
>CP032093.1|AXY00986.1|1442753_1443902_-|DUF1887-family-protein
MLRTHSHTQIGVLTKNTIPLITPVIDHTILCQHFVLLVSPDHSAQLPYIEHFLRQKDINLTVIPLESDLQSLNHALKPYQNSNIAINLSEGRPGITGQLLLWAKQHKQCAFWLNANTDKLRFLLPESTPPIPLADHICIPEFLALKGMIFQEGYRHLPSQNQLLPLAAKWLTKAHSHRQAFQTLNWLSSSANGLELTSLSCARHLWNKPHLQQLIRDLTDLNLVKKEGERRITFSDPTIASFVRGGWLEYACFSTLHQLKSTRHDIQDIALGVKIERQLQGTSVINELDVIALVNNRLFLIECKTGKLSQKPVLNQQTIYRLDSITELLGESCHGFVVSLEPLGHQINTRALEVGIHLLEGYDIKQLSQRIESIANGHNEHI
>CP032093.1|AXY02334.1|1443964_1444240_-|CRISPR-associated-endonuclease-Cas2
MVLVLACFDIEDDKTRRQVGHLLGGYGDRVQRSVFEVLFKNPQECKKVFDDLMNIIDDGDDLRFYPLCKRCADKAVGSIENPGDLNRPLVI
>CP032093.1|AXY00987.1|1444236_1447053_-|CRISPR-associated-endonuclease-Cas1
MRELLTSLLPIRGISVTLKWLSPAELKPFHQPALSAFLRGLIEHKTAFNEGLVIDCPESPRMRYSTGDYYRFTVYAFANYDQPLFHLIQQLSLLPNSAPLTQSKLPFRDNVQLVSICDTFSGQAINDFFELCEYDYDTLCTEASLWQNKTLQAHWLSPARIRRKKEDITNMKGEQRYCRDNAHVPPAMLIERVYNTITSLIRALGGDAPYSPAIPFPQVQGHTHAYWVDANYHDEKGKKKTMGGLLGHVHFSDVEKEWLPWIVLGQYTGIGHYRAFGWGRYQLRQPDGQVSMRRTIAAHPILTGIRDGAWLEDAWTHISQGKTATDKPKTSFKQNYDSLESKLNKVLNESYTVPSLSAFELKQANKDTRTLLIAPFKDRVLQRATAQWLTPILESLFSNRSYGYRPGRSREGAKEQICHLIRKGYRWVAESDIEKFFDKLDRKQIQSRLDGIFQDSTLTNAVLNWLSAPISTNKNIQPRPTGIPQGSPLSPLMANLVLDDFDNDMHSQGYQCIRFADDFIILCKTEAQAKRAMQSAERSLAEHGLSLNQSKTKISPTDKGFEFLGYLFLNDLVVENREKDKQHLDRLKQSLTKSELTFPSTSITSSDEIDQAYQPHSKLVCIAGPRCVLSNAQQRLEIKRDKELVASLAWRQIRSLVIFGQHHITTPALTAALRHDVAVHFSSPMGQYIGSAGSGRPPHGPNLWLKQIHHFDNEKFSLSLSHTLIEAKIKSQAEVLRKRNLDHHSLLQLVNDIPKTKDTMQLNGVEGHASQHYFQQLGSTLPDWANFTGRNRRPPLDPFNTLLSLGYTLLFGYCDSIARSDGLYPWQGFYHKQRSGHASLASDLVEPFRYEVDRFAHKLLTQSQLSEAHFYHDHVGACMMEREARRWYLSQLTQQFLRDVTHSKTKVKASLIDHIHKQNISLTRALAETGTFEPWSIR
>CP032093.1|AXY00988.1|1447049_1447541_-|hypothetical-protein
MVDSSGRSFYAEIVQDEKHKRNTWLKKHVINNMLWLDDASFAPFPPFIDGQATQVYGDRQATTQALNEWLTAYKQVEIWADCPAYDWVLFCDLFGGALSLPKNINYMVMDFATALRLKGRDPHTPREKLVPDASKPNGEPHNALYDALLLKACYEHHIQQEIQ
>CP032093.1|AXY00989.1|1447613_1448303_-|hypothetical-protein
MNAQGIFENQKKPWDAGKENGKQTQHLNTDLISQDQAFYYHVDFDNLSAAELTLLKIALDPNSSTEGQTMGQDVKSPYYHKIGLGKPLGLGSVQNAILFTLFIDRDARYSINGLNASRYHWAEKPSGKLKGVQEQYLSEWEALNQLEKSPPIFDDQYICAQQWQAQCIVGCADYDRSIGVKYPANNNSGEENFKWFVTNASRETRSPQQIKPITQNGPTAMRPYRSKGA
>CP032093.1|AXY00990.1|1448523_1449735_-|hypothetical-protein
MSEFYNPYQFIPLNDAPSGLAHKQEIGKKATTARHDYWGTETYSGRIICKLVTKTPVAIAAKHTKGNSNQPGQATLYTNPMTINSEKHDWPAIPATSLRGMVSAVAEAISDSPMRVFDNRHYSVRKPPQKALSAVGLLRKVRTKKNSDFQWELLPLSLPTMRNKKDEESRGYLHFFGMDRKLSECMKIYLGKDPVGTTSTCTDADQLKNEQDKGKFTIQCAINSNVTLKSLMDNYQQYFADNGTDLKKKGQYIIGQNFSKSYDSPLTSGLYRSTAFNFGKHDWFIPLTKETIENQQYWHPVSSDVINKLERMLLEVIPKDQSKNTNLLPKGYNIKPDQNGDIELIDGSIVLFDINSEGQVNELSYSQIWRKELNDTAKDFFPSGYISEDNGVALSPVDAILVQ
>CP032093.1|AXY00991.1|1449737_1450427_-|hypothetical-protein
MLIHDPEQVRPAKENEKSDQKSSDLIYLKRQGANLLIPGTTLKGAFRAQARKVLLTIAMRKLTNEKAQTFADTLVSEIFGNQDQRSLLRFPDVEVTTEHDDVKSHQYFNAIDRFTGGVKHGALFDAAIAIPKSFKVIVQGTLYKPEHKALWAWLVRDFLEGDIAIGYGKSKGYGALSALIHSPKNKKGFTWQSWYNHHKTETQSQLDALITRLDAESQNVALSPINKES
>CP032093.1|AXY00992.1|1450398_1451202_-|hypothetical-protein
MSQSFEKIKYTITLVLESDLHIGDGTINLQCANKETTSNHNPIVIDHQGQPYIPASTLRGLFAETYRAINGQDTSIFGEMRQAKEKSDIKTEHQLTPNVTPSSTAGKLAVFDAFLNKDVAKGDNEQSTSTRYRTSIDPITQTAQKHQLFTQAVVLSGTQFNVELILSNATEQRQKAVNDIIKALQTSGLYIGAGKQSGFGKSKIHQVGYQTLSKSAYLEFYLGNKQDLEWQHSYKPIYSDNSSLPNREEFVFNVTPLSDFDSRSRTG
>CP032093.1|AXY00993.1|1451205_1453056_-|hypothetical-protein
MRTEFELTFNIIAPVISQKAGVLPFGADSGYLVENNRQVLPGTLIKGNIRHALNYAVDILRSHDESKAQELNEYIKAWFGSENSHDNAFTPNRAKTHFARYWVAETELAADAYKQRRNRIKIGENGTVEKGSLLIIDTPYPTGQEIAFTGKIYLTDCHEKNAMILSLGSIKRSKRSNQWGLIKTLDLVELHRLVSKVPQSLSEPPQTLSIADTNIDETHSHLTIRYRPLEPFCIAKPHVNNSNRFESYRHIAGNILKAILVKQLREERSDSELTKMNVDNWVVKHAFPVKAENTLSKIRPYQPQISLFKNSYPATHHEAKNTWYDAAFVNDANALLTFTPKLTPTFNIDWKESDHSELEELIGKPHTPKTQLQLHTAINPTTEQSEESALFSMELIVPDETDWLGEIDLSLLTQQERQIAISELKTINNTILLGLGKTGVPVSFDIVDSTNKTRKAESKEQHTLALVLQTECIMFTQHTVEKYTAKDRHASLHDIYNEYWQSISDNGLTLSHFYATQQLRGGEYLHRRFRHEKYRPYWLTQPGSVFVLNVDKSNQTDVFELVNQWLDSGLPLPQTKTEDSENSNWKHSPYINRNGFGEIALLRDFSERGIQLLRTE
>CP032093.1|AXY00994.1|1453052_1454390_-|hypothetical-protein
MKYNQKRLPTQYFSFIVAITEETDFLLAKEQLIAKTRILQMQSFSVSPLLIPSENEHKFTQICQWSGIYPAQDSGSELGNLGESVKARRLIGKKQKRELFKNESPLIASDRHYNAQADINEQEIDNLLIPDDLESLAKIAKTELKGKIALFYADGNKFGKIQQHLLQECTTSESTKRAQRHFDDEVKKYRATFLQRLVEVIHTHSANDFPLEVLMWGGDEFYFIVPAELGFKAVQTFYDISKDWQIANPDTQASPYKLTHAGGLVFCPAKTPLKVIQSLAHDLAEEVKSTIGPELEHQTNAFNVMALESIDYPTESLSEFWQHHYGEQLGKIRLPLEPFRENWFQLIANLKTLPKGQLYRLVHSAIEEWRHGAQSQHSFKEQLARLDETTTKDTNELENDLRSLFTLVQKDHEKSEENSSDFSSDILPWIYLIELWDYLPQEGEK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP032093_2	2.1\|1352558\|35\|CP032093\|PILER-CR,CRISPRCasFinder,CRT	1352558-1352592	35	NC_024355	Staphylococcus phage 6ec, complete genome	83688-83722	8	0.771
CP032093_2	2.1\|1352558\|35\|CP032093\|PILER-CR,CRISPRCasFinder,CRT	1352558-1352592	35	NZ_CP049229	Lactobacillus iners strain C0210C1 plasmid pC0210C1, complete sequence	68083-68117	8	0.771
CP032093_2	2.1\|1352558\|35\|CP032093\|PILER-CR,CRISPRCasFinder,CRT	1352558-1352592	35	NZ_CP049227	Lactobacillus iners strain C0011D1 plasmid pC0011D1, complete sequence	76923-76957	8	0.771
CP032093_2	2.1\|1352558\|35\|CP032093\|PILER-CR,CRISPRCasFinder,CRT	1352558-1352592	35	NZ_CP044034	Klebsiella pneumoniae strain FDAARGOS_631 plasmid unnamed2, complete sequence	37730-37764	10	0.714
CP032093_2	2.1\|1352558\|35\|CP032093\|PILER-CR,CRISPRCasFinder,CRT	1352558-1352592	35	MF377441	Arthrobacter phage Timinator, complete genome	37228-37262	10	0.714
CP032093_2	2.1\|1352558\|35\|CP032093\|PILER-CR,CRISPRCasFinder,CRT	1352558-1352592	35	KF929199	Staphylococcus phage vB_SepS_SEP9, complete genome	77669-77703	10	0.714
CP032093_2	2.4\|1352774\|34\|CP032093\|PILER-CR,CRISPRCasFinder,CRT	1352774-1352807	34	NZ_CP021643	Campylobacter concisus strain P2CDO4 plasmid pICON, complete sequence	12833-12866	11	0.676

1. spacer 2.1|1352558|35|CP032093|PILER-CR,CRISPRCasFinder,CRT matches to NC_024355 (Staphylococcus phage 6ec, complete genome) position: , mismatch: 8, identity: 0.771

aacatatgttgatgttgaatatgttgttgtaaata	CRISPR spacer
caagaatgttgatgttgaatatgttgatgtagagg	Protospacer
 * . ********************* ****.* .

2. spacer 2.1|1352558|35|CP032093|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049229 (Lactobacillus iners strain C0210C1 plasmid pC0210C1, complete sequence) position: , mismatch: 8, identity: 0.771

aacatatgttgatgttgaatatgttgttgtaaata	CRISPR spacer
attttttgttgatgttcaatattttgttgtaaagc	Protospacer
* . * ********** ***** **********

3. spacer 2.1|1352558|35|CP032093|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049227 (Lactobacillus iners strain C0011D1 plasmid pC0011D1, complete sequence) position: , mismatch: 8, identity: 0.771

aacatatgttgatgttgaatatgttgttgtaaata	CRISPR spacer
attttttgttgatgttcaatattttgttgtaaagc	Protospacer
* . * ********** ***** **********

4. spacer 2.1|1352558|35|CP032093|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044034 (Klebsiella pneumoniae strain FDAARGOS_631 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

aacatatgttgatgttgaatatgttgttgtaaata	CRISPR spacer
tgctaagaaagaggttgattatgttgttgtaaata	Protospacer
 .*  * .  ** ***** ****************

5. spacer 2.1|1352558|35|CP032093|PILER-CR,CRISPRCasFinder,CRT matches to MF377441 (Arthrobacter phage Timinator, complete genome) position: , mismatch: 10, identity: 0.714

aacatatgttgatgttgaatatgttgttgtaaata	CRISPR spacer
tattgatgttgatgctgaatatgttgatgttcact	Protospacer
 *.  *********.*********** ***  *.

6. spacer 2.1|1352558|35|CP032093|PILER-CR,CRISPRCasFinder,CRT matches to KF929199 (Staphylococcus phage vB_SepS_SEP9, complete genome) position: , mismatch: 10, identity: 0.714

aacatatgttgatgttgaatatgttgttgtaaata	CRISPR spacer
caagaatgttgatgttgaatatgtcgatgttgagg	Protospacer
 * . *******************.* *** .* .

7. spacer 2.4|1352774|34|CP032093|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021643 (Campylobacter concisus strain P2CDO4 plasmid pICON, complete sequence) position: , mismatch: 11, identity: 0.676

aaacaagtcgtcttcatccacatattcaggaact	CRISPR spacer
ctggaagtcgtcttcgtccatatattcattgtca	Protospacer
  . ***********.****.*******  . *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

444435 : 450411

Vibrio_phage(50.0%)

integrase

attL 444227:444283|attR 457896:457952

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
444227:444283	attL	NA	NA	NA	NA
AXY00245.1\|444435_445461_+\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	2.5e-20	33.6
AXY00246.1\|445453_445990_+	hypothetical protein	NA	NA	NA	NA
AXY02296.1\|446360_446606_+	hypothetical protein	NA	NA	NA	NA
AXY00247.1\|446602_447091_+	helix-turn-helix domain-containing protein	R9TPU9	Vibrio_phage	1.7e-19	39.2
AXY00248.1\|447069_447513_+	hypothetical protein	W8EA44	Vibrio_phage	1.7e-10	40.4
AXY00249.1\|447487_447946_+	hypothetical protein	A0A2I7S3R6	Vibrio_phage	1.5e-06	31.7
AXY00250.1\|447947_448592_+	hypothetical protein	A0A1I9KFG9	Aeromonas_phage	1.8e-08	25.5
AXY00251.1\|448797_450411_+	DNA methyltransferase	A0A220A2U4	Liberibacter_phage	1.6e-50	27.4
457896:457952	attR	NA	NA	NA	NA

DBSCAN-SWA_2

541861 : 553180

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY00320.1\|541861_542638_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.9e-65	51.2
AXY00321.1\|542637_543264_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.4e-37	53.3
AXY00322.1\|543278_544202_+	LysM peptidoglycan-binding domain-containing protein	D7RWE0	Brochothrix_phage	1.5e-05	35.2
AXY00323.1\|544282_545269_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.9e-36	35.2
AXY00324.1\|545379_547941_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	2.2e-33	22.4
AXY00325.1\|548025_548508_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	4.4e-28	48.7
AXY00326.1\|548708_549752_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	3.7e-112	61.0
AXY00327.1\|549972_550440_+	recombination regulator RecX	NA	NA	NA	NA
AXY00328.1\|550582_553180_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.6e-76	37.3

DBSCAN-SWA_3

2417922 : 2424611

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXY01727.1\|2417922_2418393_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.3e-32	49.3
AXY01728.1\|2418562_2419672_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	4.4e-63	39.0
AXY01729.1\|2419830_2420484_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.9e-34	38.0
AXY01730.1\|2420495_2421623_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	7.1e-45	36.6
AXY01731.1\|2421627_2422077_-	transcriptional regulator NrdR	NA	NA	NA	NA
AXY01732.1\|2422203_2423454_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	7.3e-99	48.2
AXY01733.1\|2423471_2424611_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.9e-62	41.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP032094

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP032093

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection