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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP020378 Clostridioides difficile strain DSM 102859 chromosome, complete genome 16 crisprs csa3,WYL,c2c9_V-U4,cas14j,cas3,c2c10_CAS-V-U3,DEDDh,DinG,RT,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2 7 84 15 1

Results visualization

1. CP020378
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020378_1 31917-32002 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020378_2 128788-128877 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020378_3 135678-135767 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020378_4 144217-144295 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020378_5 151683-151772 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020378_6 868592-868770 TypeV NA
2 spacers
cas14j

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020378_7 1426711-1427666 Orphan I-A
14 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020378_9 1648741-1648900 Orphan I-A
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020378_10 1760025-1760382 Orphan I-A
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020378_11 1935990-1937201 Orphan I-A
18 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020378_12 2804647-2804804 TypeV NA
2 spacers
cas14j,cas3,cas5,cas7,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020378_13 2885378-2885605 Orphan I-A
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020378_14 3098442-3099388 Orphan I-A
14 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020378_19 3453908-3456960 Unclear I-A
46 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020378_20 3737432-3737527 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020378_21 3824186-3824831 Orphan I-A
9 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP020378_1 1.1|31941|38|CP020378|CRISPRCasFinder 31941-31978 38 CP020378.1 4099190-4099227 0 1.0
CP020378_2 2.1|128816|34|CP020378|CRISPRCasFinder 128816-128849 34 CP020378.1 146256-146289 0 1.0
CP020378_2 2.1|128816|34|CP020378|CRISPRCasFinder 128816-128849 34 CP020378.1 1175022-1175055 0 1.0
CP020378_2 2.1|128816|34|CP020378|CRISPRCasFinder 128816-128849 34 CP020378.1 3963233-3963266 0 1.0
CP020378_2 2.1|128816|34|CP020378|CRISPRCasFinder 128816-128849 34 CP020378.1 4099182-4099215 0 1.0
CP020378_3 3.1|135706|34|CP020378|CRISPRCasFinder 135706-135739 34 CP020378.1 146256-146289 0 1.0
CP020378_3 3.1|135706|34|CP020378|CRISPRCasFinder 135706-135739 34 CP020378.1 1175022-1175055 0 1.0
CP020378_3 3.1|135706|34|CP020378|CRISPRCasFinder 135706-135739 34 CP020378.1 3963233-3963266 0 1.0
CP020378_3 3.1|135706|34|CP020378|CRISPRCasFinder 135706-135739 34 CP020378.1 4099182-4099215 0 1.0
CP020378_5 5.1|151711|34|CP020378|CRISPRCasFinder 151711-151744 34 CP020378.1 146256-146289 0 1.0
CP020378_5 5.1|151711|34|CP020378|CRISPRCasFinder 151711-151744 34 CP020378.1 1175022-1175055 0 1.0
CP020378_5 5.1|151711|34|CP020378|CRISPRCasFinder 151711-151744 34 CP020378.1 3963233-3963266 0 1.0
CP020378_5 5.1|151711|34|CP020378|CRISPRCasFinder 151711-151744 34 CP020378.1 4099182-4099215 0 1.0
CP020378_19 19.35|3456174|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456174-3456210 37 CP020378.1 1278668-1278704 0 1.0
CP020378_21 21.2|3824281|35|CP020378|CRISPRCasFinder 3824281-3824315 35 CP020378.1 3101958-3101992 0 1.0
CP020378_11 11.16|1937005|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1937005-1937041 37 CP020378.1 1239481-1239517 1 0.973

1. spacer 1.1|31941|38|CP020378|CRISPRCasFinder matches to position: 4099190-4099227, mismatch: 0, identity: 1.0 

tagcaacagaataaactgaacgcatgtgaagtttgttt	CRISPR spacer
tagcaacagaataaactgaacgcatgtgaagtttgttt	Protospacer
**************************************

2. spacer 2.1|128816|34|CP020378|CRISPRCasFinder matches to position: 146256-146289, mismatch: 0, identity: 1.0 

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

3. spacer 2.1|128816|34|CP020378|CRISPRCasFinder matches to position: 1175022-1175055, mismatch: 0, identity: 1.0 

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

4. spacer 2.1|128816|34|CP020378|CRISPRCasFinder matches to position: 3963233-3963266, mismatch: 0, identity: 1.0 

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

5. spacer 2.1|128816|34|CP020378|CRISPRCasFinder matches to position: 4099182-4099215, mismatch: 0, identity: 1.0 

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

6. spacer 3.1|135706|34|CP020378|CRISPRCasFinder matches to position: 146256-146289, mismatch: 0, identity: 1.0 

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

7. spacer 3.1|135706|34|CP020378|CRISPRCasFinder matches to position: 1175022-1175055, mismatch: 0, identity: 1.0 

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

8. spacer 3.1|135706|34|CP020378|CRISPRCasFinder matches to position: 3963233-3963266, mismatch: 0, identity: 1.0 

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

9. spacer 3.1|135706|34|CP020378|CRISPRCasFinder matches to position: 4099182-4099215, mismatch: 0, identity: 1.0 

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

10. spacer 5.1|151711|34|CP020378|CRISPRCasFinder matches to position: 146256-146289, mismatch: 0, identity: 1.0 

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

11. spacer 5.1|151711|34|CP020378|CRISPRCasFinder matches to position: 1175022-1175055, mismatch: 0, identity: 1.0 

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

12. spacer 5.1|151711|34|CP020378|CRISPRCasFinder matches to position: 3963233-3963266, mismatch: 0, identity: 1.0 

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

13. spacer 5.1|151711|34|CP020378|CRISPRCasFinder matches to position: 4099182-4099215, mismatch: 0, identity: 1.0 

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacgcatgtgaagtttgtttgttggcgc	Protospacer
**********************************

14. spacer 19.35|3456174|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to position: 1278668-1278704, mismatch: 0, identity: 1.0 

taacagcaataaagaacactaacaaaaaagctaaaag	CRISPR spacer
taacagcaataaagaacactaacaaaaaagctaaaag	Protospacer
*************************************

15. spacer 21.2|3824281|35|CP020378|CRISPRCasFinder matches to position: 3101958-3101992, mismatch: 0, identity: 1.0 

agtttttgataacttaaaatctagctttgcagagt	CRISPR spacer
agtttttgataacttaaaatctagctttgcagagt	Protospacer
***********************************

16. spacer 11.16|1937005|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to position: 1239481-1239517, mismatch: 1, identity: 0.973 

catgaacattctctataatatgtgtgttcttcaacta	CRISPR spacer
caagaacattctctataatatgtgtgttcttcaacta	Protospacer
** **********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP020378_4 4.1|144242|29|CP020378|CRISPRCasFinder 144242-144270 29 NZ_CP033215 Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence 5105-5133 0 1.0
CP020378_7 7.1|1426740|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1426740-1426775 36 NZ_CP020425 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence 15687-15722 0 1.0
CP020378_7 7.1|1426740|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1426740-1426775 36 NZ_CP029156 Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence 31937-31972 0 1.0
CP020378_7 7.1|1426740|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1426740-1426775 36 NZ_CP029153 Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence 25981-26016 0 1.0
CP020378_7 7.1|1426740|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1426740-1426775 36 FN668942 Clostridium difficile BI1 plasmid pCDBI1, complete sequence 14332-14367 0 1.0
CP020378_7 7.1|1426740|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1426740-1426775 36 NZ_CP011969 Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence 11009-11044 0 1.0
CP020378_7 7.2|1426805|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1426805-1426841 37 NZ_CP020425 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence 24565-24601 0 1.0
CP020378_7 7.2|1426805|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1426805-1426841 37 FN668942 Clostridium difficile BI1 plasmid pCDBI1, complete sequence 23210-23246 0 1.0
CP020378_7 7.2|1426805|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1426805-1426841 37 NZ_CP011969 Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence 19887-19923 0 1.0
CP020378_7 7.5|1427003|38|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427003-1427040 38 NZ_CP029155 Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence 69258-69295 0 1.0
CP020378_7 7.5|1427003|38|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427003-1427040 38 MF547662 Clostridioides phage LIBA6276, complete genome 19422-19459 0 1.0
CP020378_7 7.5|1427003|38|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427003-1427040 38 MF547663 Clostridioides phage LIBA2945, complete genome 19422-19459 0 1.0
CP020378_7 7.7|1427139|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427139-1427175 37 NZ_CP029155 Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence 70805-70841 0 1.0
CP020378_7 7.7|1427139|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427139-1427175 37 MF547662 Clostridioides phage LIBA6276, complete genome 20970-21006 0 1.0
CP020378_7 7.7|1427139|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427139-1427175 37 MF547663 Clostridioides phage LIBA2945, complete genome 20970-21006 0 1.0
CP020378_10 10.5|1760054|38|CP020378|CRISPRCasFinder 1760054-1760091 38 NC_028838 Clostridium phage phiCD506, complete genome 24132-24169 0 1.0
CP020378_10 10.5|1760054|38|CP020378|CRISPRCasFinder 1760054-1760091 38 NC_028958 Clostridium phage phiCD146, complete genome 29963-30000 0 1.0
CP020378_10 10.5|1760054|38|CP020378|CRISPRCasFinder 1760054-1760091 38 MK473382 Clostridium phage JD032, complete genome 10118-10155 0 1.0
CP020378_11 11.2|1936084|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936084-1936120 37 FN668942 Clostridium difficile BI1 plasmid pCDBI1, complete sequence 30461-30497 0 1.0
CP020378_11 11.5|1936284|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936284-1936320 37 KU057941 Clostridium phage CDSH1, complete genome 25566-25602 0 1.0
CP020378_11 11.5|1936284|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936284-1936320 37 LN881738 Escherichia phage slur17, complete genome 36454-36490 0 1.0
CP020378_11 11.5|1936284|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936284-1936320 37 NC_028905 Clostridium phage phiCD111, complete genome 25340-25376 0 1.0
CP020378_11 11.5|1936284|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936284-1936320 37 HM568888 Clostridium phage phiCD38-2, complete genome 25062-25098 0 1.0
CP020378_11 11.5|1936284|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936284-1936320 37 NC_028958 Clostridium phage phiCD146, complete genome 24624-24660 0 1.0
CP020378_11 11.6|1936350|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936350-1936386 37 AY855346 Clostridium difficile bacteriophage phi CD119, complete genome 9170-9206 0 1.0
CP020378_11 11.6|1936350|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936350-1936386 37 NC_007917 Clostridium phage phi CD119, complete genome 9170-9206 0 1.0
CP020378_11 11.6|1936350|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936350-1936386 37 NC_028996 Clostridium phage phiCDHM19, complete genome 9416-9452 0 1.0
CP020378_11 11.9|1936546|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936546-1936582 37 NZ_CP029155 Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence 70805-70841 0 1.0
CP020378_11 11.9|1936546|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936546-1936582 37 MF547662 Clostridioides phage LIBA6276, complete genome 20970-21006 0 1.0
CP020378_11 11.9|1936546|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936546-1936582 37 MF547663 Clostridioides phage LIBA2945, complete genome 20970-21006 0 1.0
CP020378_11 11.14|1936875|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936875-1936911 37 LN681539 Clostridium phage phiCD505, complete genome 31425-31461 0 1.0
CP020378_11 11.15|1936941|35|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936941-1936975 35 NC_048642 Clostridium phage CDKM9, complete genome 26225-26259 0 1.0
CP020378_11 11.16|1937005|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1937005-1937041 37 AY855346 Clostridium difficile bacteriophage phi CD119, complete genome 41448-41484 0 1.0
CP020378_11 11.16|1937005|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1937005-1937041 37 NC_007917 Clostridium phage phi CD119, complete genome 41448-41484 0 1.0
CP020378_11 11.16|1937005|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1937005-1937041 37 HG531805 Clostridium phage CDMH1 complete genome 44300-44336 0 1.0
CP020378_14 14.4|3098669|38|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098669-3098706 38 JX145341 Clostridium phage phiMMP02, complete genome 15612-15649 0 1.0
CP020378_14 14.6|3098801|38|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098801-3098838 38 AY855346 Clostridium difficile bacteriophage phi CD119, complete genome 34150-34187 0 1.0
CP020378_14 14.6|3098801|38|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098801-3098838 38 NC_007917 Clostridium phage phi CD119, complete genome 34150-34187 0 1.0
CP020378_14 14.6|3098801|38|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098801-3098838 38 JX145341 Clostridium phage phiMMP02, complete genome 35106-35143 0 1.0
CP020378_14 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098933-3098966 34 MK473382 Clostridium phage JD032, complete genome 11919-11952 0 1.0
CP020378_14 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098933-3098966 34 LN881738 Escherichia phage slur17, complete genome 33114-33147 0 1.0
CP020378_14 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098933-3098966 34 NC_048665 Clostridium phage phiCDHM14, complete genome 22513-22546 0 1.0
CP020378_14 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098933-3098966 34 KU057941 Clostridium phage CDSH1, complete genome 28909-28942 0 1.0
CP020378_14 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098933-3098966 34 NC_028905 Clostridium phage phiCD111, complete genome 28683-28716 0 1.0
CP020378_14 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098933-3098966 34 NC_028838 Clostridium phage phiCD506, complete genome 22334-22367 0 1.0
CP020378_14 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098933-3098966 34 HM568888 Clostridium phage phiCD38-2, complete genome 28405-28438 0 1.0
CP020378_14 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098933-3098966 34 HG796225 Clostridium phage phiCDHM13 complete genome 22013-22046 0 1.0
CP020378_14 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098933-3098966 34 NC_028958 Clostridium phage phiCD146, complete genome 27967-28000 0 1.0
CP020378_14 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098933-3098966 34 LN681538 Clostridium phage phiCD481-1, complete genome 21753-21786 0 1.0
CP020378_14 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098933-3098966 34 HG798901 Clostridium phage phiCDHM11 complete genome 22013-22046 0 1.0
CP020378_14 14.10|3099062|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3099062-3099098 37 NZ_CP029156 Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence 23501-23537 0 1.0
CP020378_14 14.10|3099062|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3099062-3099098 37 NZ_CP029153 Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence 17545-17581 0 1.0
CP020378_14 14.12|3099193|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3099193-3099228 36 LN681539 Clostridium phage phiCD505, complete genome 16619-16654 0 1.0
CP020378_14 14.12|3099193|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3099193-3099228 36 NC_048642 Clostridium phage CDKM9, complete genome 16557-16592 0 1.0
CP020378_14 14.14|3099324|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3099324-3099359 36 KU057941 Clostridium phage CDSH1, complete genome 7526-7561 0 1.0
CP020378_14 14.14|3099324|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3099324-3099359 36 NC_028905 Clostridium phage phiCD111, complete genome 7555-7590 0 1.0
CP020378_14 14.14|3099324|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3099324-3099359 36 LN881738 Escherichia phage slur17, complete genome 12876-12911 0 1.0
CP020378_19 19.7|3454333|35|CP020378|CRISPRCasFinder,CRT 3454333-3454367 35 FN668942 Clostridium difficile BI1 plasmid pCDBI1, complete sequence 29555-29589 0 1.0
CP020378_19 19.14|3454790|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3454790-3454826 37 GU949551 Clostridium phage phiCD6356, complete genome 26723-26759 0 1.0
CP020378_19 19.19|3455118|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455118-3455154 37 NC_028905 Clostridium phage phiCD111, complete genome 19748-19784 0 1.0
CP020378_19 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455184-3455220 37 NC_048665 Clostridium phage phiCDHM14, complete genome 22701-22737 0 1.0
CP020378_19 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455184-3455220 37 KU057941 Clostridium phage CDSH1, complete genome 29097-29133 0 1.0
CP020378_19 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455184-3455220 37 NC_028905 Clostridium phage phiCD111, complete genome 28871-28907 0 1.0
CP020378_19 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455184-3455220 37 NC_028838 Clostridium phage phiCD506, complete genome 22522-22558 0 1.0
CP020378_19 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455184-3455220 37 HG796225 Clostridium phage phiCDHM13 complete genome 22201-22237 0 1.0
CP020378_19 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455184-3455220 37 NC_028958 Clostridium phage phiCD146, complete genome 28155-28191 0 1.0
CP020378_19 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455184-3455220 37 LN681538 Clostridium phage phiCD481-1, complete genome 21941-21977 0 1.0
CP020378_19 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455184-3455220 37 HG798901 Clostridium phage phiCDHM11 complete genome 22201-22237 0 1.0
CP020378_19 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455184-3455220 37 MK473382 Clostridium phage JD032, complete genome 11728-11764 0 1.0
CP020378_19 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455184-3455220 37 LN881738 Escherichia phage slur17, complete genome 32923-32959 0 1.0
CP020378_19 19.22|3455316|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455316-3455352 37 KU057941 Clostridium phage CDSH1, complete genome 29728-29764 0 1.0
CP020378_19 19.22|3455316|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455316-3455352 37 NC_028905 Clostridium phage phiCD111, complete genome 29524-29560 0 1.0
CP020378_19 19.22|3455316|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455316-3455352 37 NC_028838 Clostridium phage phiCD506, complete genome 23150-23186 0 1.0
CP020378_19 19.22|3455316|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455316-3455352 37 HM568888 Clostridium phage phiCD38-2, complete genome 29222-29258 0 1.0
CP020378_19 19.22|3455316|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455316-3455352 37 NC_028958 Clostridium phage phiCD146, complete genome 28786-28822 0 1.0
CP020378_19 19.22|3455316|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455316-3455352 37 MK473382 Clostridium phage JD032, complete genome 11099-11135 0 1.0
CP020378_19 19.22|3455316|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455316-3455352 37 LN881738 Escherichia phage slur17, complete genome 32292-32328 0 1.0
CP020378_19 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455382-3455418 37 KU057941 Clostridium phage CDSH1, complete genome 30531-30567 0 1.0
CP020378_19 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455382-3455418 37 LN881738 Escherichia phage slur17, complete genome 31489-31525 0 1.0
CP020378_19 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455382-3455418 37 HM568888 Clostridium phage phiCD38-2, complete genome 30023-30059 0 1.0
CP020378_19 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455382-3455418 37 NC_028958 Clostridium phage phiCD146, complete genome 29784-29820 0 1.0
CP020378_19 19.29|3455777|38|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455777-3455814 38 JX145342 Clostridium phage phiMMP04, complete genome 9281-9318 0 1.0
CP020378_19 19.30|3455844|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455844-3455880 37 AY855346 Clostridium difficile bacteriophage phi CD119, complete genome 10806-10842 0 1.0
CP020378_19 19.30|3455844|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455844-3455880 37 NC_007917 Clostridium phage phi CD119, complete genome 10806-10842 0 1.0
CP020378_19 19.30|3455844|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455844-3455880 37 NC_028996 Clostridium phage phiCDHM19, complete genome 11052-11088 0 1.0
CP020378_19 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455910-3455946 37 AY855346 Clostridium difficile bacteriophage phi CD119, complete genome 28937-28973 0 1.0
CP020378_19 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455910-3455946 37 NC_007917 Clostridium phage phi CD119, complete genome 28937-28973 0 1.0
CP020378_19 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455910-3455946 37 LN681539 Clostridium phage phiCD505, complete genome 30973-31009 0 1.0
CP020378_19 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455910-3455946 37 NC_028996 Clostridium phage phiCDHM19, complete genome 32965-33001 0 1.0
CP020378_19 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455910-3455946 37 LN681542 Clostridium phage phiMMP03, complete genome 29952-29988 0 1.0
CP020378_19 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455910-3455946 37 HG531805 Clostridium phage CDMH1 complete genome 29324-29360 0 1.0
CP020378_19 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455910-3455946 37 NC_009231 Clostridium phage phiC2, complete genome 33485-33521 0 1.0
CP020378_19 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455910-3455946 37 JX145341 Clostridium phage phiMMP02, complete genome 30207-30243 0 1.0
CP020378_19 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455910-3455946 37 NC_011398 Clostridium phage phiCD27, complete genome 32744-32780 0 1.0
CP020378_19 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455910-3455946 37 NC_048642 Clostridium phage CDKM9, complete genome 31432-31468 0 1.0
CP020378_19 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455910-3455946 37 KX228400 Clostridium phage CDKM15, complete genome 32353-32389 0 1.0
CP020378_19 19.33|3456042|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456042-3456077 36 LN881738 Escherichia phage slur17, complete genome 975-1010 0 1.0
CP020378_19 19.33|3456042|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456042-3456077 36 KU057941 Clostridium phage CDSH1, complete genome 19427-19462 0 1.0
CP020378_19 19.33|3456042|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456042-3456077 36 HM568888 Clostridium phage phiCD38-2, complete genome 18923-18958 0 1.0
CP020378_19 19.33|3456042|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456042-3456077 36 NC_028958 Clostridium phage phiCD146, complete genome 18932-18967 0 1.0
CP020378_19 19.36|3456240|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456240-3456276 37 JX145341 Clostridium phage phiMMP02, complete genome 37071-37107 0 1.0
CP020378_19 19.39|3456438|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456438-3456473 36 LN681542 Clostridium phage phiMMP03, complete genome 693-728 0 1.0
CP020378_19 19.39|3456438|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456438-3456473 36 HG531805 Clostridium phage CDMH1 complete genome 606-641 0 1.0
CP020378_19 19.39|3456438|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456438-3456473 36 NC_009231 Clostridium phage phiC2, complete genome 724-759 0 1.0
CP020378_19 19.39|3456438|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456438-3456473 36 NC_009231 Clostridium phage phiC2, complete genome 56492-56527 0 1.0
CP020378_19 19.39|3456438|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456438-3456473 36 LN681541 Clostridium phage phiMMP01, complete genome 693-728 0 1.0
CP020378_19 19.42|3456634|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456634-3456669 36 LN681539 Clostridium phage phiCD505, complete genome 33801-33836 0 1.0
CP020378_19 19.42|3456634|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456634-3456669 36 JX145341 Clostridium phage phiMMP02, complete genome 33030-33065 0 1.0
CP020378_21 21.6|3824569|35|CP020378|CRISPRCasFinder 3824569-3824603 35 NZ_CP020425 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence 37117-37151 0 1.0
CP020378_21 21.6|3824569|35|CP020378|CRISPRCasFinder 3824569-3824603 35 FN668942 Clostridium difficile BI1 plasmid pCDBI1, complete sequence 35851-35885 0 1.0
CP020378_21 21.6|3824569|35|CP020378|CRISPRCasFinder 3824569-3824603 35 NZ_CP011969 Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence 32439-32473 0 1.0
CP020378_21 21.6|3824569|35|CP020378|CRISPRCasFinder 3824569-3824603 35 NZ_CP029156 Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence 8675-8709 0 1.0
CP020378_21 21.6|3824569|35|CP020378|CRISPRCasFinder 3824569-3824603 35 NZ_CP029153 Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence 2719-2753 0 1.0
CP020378_2 2.1|128816|34|CP020378|CRISPRCasFinder 128816-128849 34 NZ_CP033215 Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence 3086-3119 1 0.971
CP020378_3 3.1|135706|34|CP020378|CRISPRCasFinder 135706-135739 34 NZ_CP033215 Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence 3086-3119 1 0.971
CP020378_5 5.1|151711|34|CP020378|CRISPRCasFinder 151711-151744 34 NZ_CP033215 Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence 3086-3119 1 0.971
CP020378_7 7.8|1427205|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427205-1427241 37 AY855346 Clostridium difficile bacteriophage phi CD119, complete genome 35738-35774 1 0.973
CP020378_7 7.8|1427205|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427205-1427241 37 NC_007917 Clostridium phage phi CD119, complete genome 35738-35774 1 0.973
CP020378_7 7.8|1427205|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427205-1427241 37 LN681542 Clostridium phage phiMMP03, complete genome 37403-37439 1 0.973
CP020378_7 7.8|1427205|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427205-1427241 37 NC_009231 Clostridium phage phiC2, complete genome 40940-40976 1 0.973
CP020378_7 7.8|1427205|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427205-1427241 37 LN681541 Clostridium phage phiMMP01, complete genome 34821-34857 1 0.973
CP020378_7 7.8|1427205|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427205-1427241 37 NC_048642 Clostridium phage CDKM9, complete genome 38887-38923 1 0.973
CP020378_7 7.9|1427271|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427271-1427307 37 NZ_MF547664 Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence 26774-26810 1 0.973
CP020378_7 7.14|1427601|37|CP020378|CRISPRCasFinder,CRT 1427601-1427637 37 NZ_CP029155 Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence 99242-99278 1 0.973
CP020378_7 7.14|1427601|37|CP020378|CRISPRCasFinder,CRT 1427601-1427637 37 MF547662 Clostridioides phage LIBA6276, complete genome 53095-53131 1 0.973
CP020378_7 7.14|1427601|37|CP020378|CRISPRCasFinder,CRT 1427601-1427637 37 MF547663 Clostridioides phage LIBA2945, complete genome 52945-52981 1 0.973
CP020378_9 9.1|1648769|38|CP020378|CRISPRCasFinder 1648769-1648806 38 GU949551 Clostridium phage phiCD6356, complete genome 127-164 1 0.974
CP020378_10 10.1|1760053|39|CP020378|PILER-CR,CRT 1760053-1760091 39 MK473382 Clostridium phage JD032, complete genome 10118-10156 1 0.974
CP020378_10 10.1|1760053|39|CP020378|PILER-CR,CRT 1760053-1760091 39 NC_028838 Clostridium phage phiCD506, complete genome 24131-24169 1 0.974
CP020378_10 10.1|1760053|39|CP020378|PILER-CR,CRT 1760053-1760091 39 NC_028958 Clostridium phage phiCD146, complete genome 29962-30000 1 0.974
CP020378_10 10.2|1760120|38|CP020378|PILER-CR,CRT 1760120-1760157 38 GU949551 Clostridium phage phiCD6356, complete genome 36663-36700 1 0.974
CP020378_10 10.6|1760121|37|CP020378|CRISPRCasFinder 1760121-1760157 37 GU949551 Clostridium phage phiCD6356, complete genome 36664-36700 1 0.973
CP020378_11 11.7|1936416|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936416-1936451 36 MF547662 Clostridioides phage LIBA6276, complete genome 11889-11924 1 0.972
CP020378_11 11.7|1936416|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936416-1936451 36 MF547663 Clostridioides phage LIBA2945, complete genome 11889-11924 1 0.972
CP020378_11 11.8|1936481|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936481-1936516 36 MF547662 Clostridioides phage LIBA6276, complete genome 103999-104034 1 0.972
CP020378_11 11.8|1936481|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936481-1936516 36 MF547663 Clostridioides phage LIBA2945, complete genome 102539-102574 1 0.972
CP020378_11 11.12|1936744|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936744-1936780 37 MF547662 Clostridioides phage LIBA6276, complete genome 3466-3502 1 0.973
CP020378_11 11.12|1936744|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936744-1936780 37 MF547663 Clostridioides phage LIBA2945, complete genome 3466-3502 1 0.973
CP020378_13 13.1|2885407|36|CP020378|PILER-CR,CRT 2885407-2885442 36 GU949551 Clostridium phage phiCD6356, complete genome 12396-12431 1 0.972
CP020378_13 13.4|2885408|35|CP020378|CRISPRCasFinder 2885408-2885442 35 GU949551 Clostridium phage phiCD6356, complete genome 12397-12431 1 0.971
CP020378_14 14.14|3099324|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3099324-3099359 36 HM568888 Clostridium phage phiCD38-2, complete genome 7213-7248 1 0.972
CP020378_14 14.14|3099324|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3099324-3099359 36 NC_028958 Clostridium phage phiCD146, complete genome 7225-7260 1 0.972
CP020378_19 19.9|3454464|36|CP020378|CRISPRCasFinder,CRT 3454464-3454499 36 NC_028905 Clostridium phage phiCD111, complete genome 22095-22130 1 0.972
CP020378_19 19.19|3455118|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455118-3455154 37 KU057941 Clostridium phage CDSH1, complete genome 19780-19816 1 0.973
CP020378_19 19.19|3455118|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455118-3455154 37 HM568888 Clostridium phage phiCD38-2, complete genome 19276-19312 1 0.973
CP020378_19 19.19|3455118|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455118-3455154 37 NC_028958 Clostridium phage phiCD146, complete genome 19285-19321 1 0.973
CP020378_19 19.19|3455118|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455118-3455154 37 LN881738 Escherichia phage slur17, complete genome 621-657 1 0.973
CP020378_19 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455184-3455220 37 HM568888 Clostridium phage phiCD38-2, complete genome 28593-28629 1 0.973
CP020378_19 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455382-3455418 37 NC_048665 Clostridium phage phiCDHM14, complete genome 23380-23416 1 0.973
CP020378_19 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455382-3455418 37 MK473382 Clostridium phage JD032, complete genome 10298-10334 1 0.973
CP020378_19 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455382-3455418 37 NC_028838 Clostridium phage phiCD506, complete genome 23953-23989 1 0.973
CP020378_19 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455382-3455418 37 HG796225 Clostridium phage phiCDHM13 complete genome 22881-22917 1 0.973
CP020378_19 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455382-3455418 37 LN681538 Clostridium phage phiCD481-1, complete genome 22620-22656 1 0.973
CP020378_19 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455382-3455418 37 HG798901 Clostridium phage phiCDHM11 complete genome 22880-22916 1 0.973
CP020378_19 19.28|3455711|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455711-3455747 37 NC_028905 Clostridium phage phiCD111, complete genome 4750-4786 1 0.973
CP020378_19 19.35|3456174|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456174-3456210 37 NC_048665 Clostridium phage phiCDHM14, complete genome 20206-20242 1 0.973
CP020378_19 19.35|3456174|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456174-3456210 37 HG796225 Clostridium phage phiCDHM13 complete genome 19706-19742 1 0.973
CP020378_19 19.35|3456174|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456174-3456210 37 HG798901 Clostridium phage phiCDHM11 complete genome 19705-19741 1 0.973
CP020378_19 19.50|3454333|36|CP020378|PILER-CR 3454333-3454368 36 FN668942 Clostridium difficile BI1 plasmid pCDBI1, complete sequence 29555-29590 1 0.972
CP020378_21 21.2|3824281|35|CP020378|CRISPRCasFinder 3824281-3824315 35 NC_011398 Clostridium phage phiCD27, complete genome 15173-15207 1 0.971
CP020378_21 21.2|3824281|35|CP020378|CRISPRCasFinder 3824281-3824315 35 KX228400 Clostridium phage CDKM15, complete genome 15316-15350 1 0.971
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 LN681539 Clostridium phage phiCD505, complete genome 43253-43291 1 0.974
CP020378_21 21.15|3824568|38|CP020378|CRT 3824568-3824605 38 NZ_CP029156 Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence 8673-8710 1 0.974
CP020378_21 21.15|3824568|38|CP020378|CRT 3824568-3824605 38 NZ_CP029153 Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence 2717-2754 1 0.974
CP020378_21 21.15|3824568|38|CP020378|CRT 3824568-3824605 38 NZ_CP020425 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence 37116-37153 1 0.974
CP020378_21 21.15|3824568|38|CP020378|CRT 3824568-3824605 38 FN668942 Clostridium difficile BI1 plasmid pCDBI1, complete sequence 35850-35887 1 0.974
CP020378_21 21.15|3824568|38|CP020378|CRT 3824568-3824605 38 NZ_CP011969 Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence 32438-32475 1 0.974
CP020378_1 1.1|31941|38|CP020378|CRISPRCasFinder 31941-31978 38 NZ_CP033215 Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence 3094-3131 2 0.947
CP020378_7 7.8|1427205|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427205-1427241 37 LN681539 Clostridium phage phiCD505, complete genome 37235-37271 2 0.946
CP020378_7 7.8|1427205|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427205-1427241 37 JX145341 Clostridium phage phiMMP02, complete genome 36645-36681 2 0.946
CP020378_7 7.14|1427601|37|CP020378|CRISPRCasFinder,CRT 1427601-1427637 37 CP011970 Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence 47035-47071 2 0.946
CP020378_7 7.14|1427601|37|CP020378|CRISPRCasFinder,CRT 1427601-1427637 37 LN681537 Clostridium phage phiCD211, complete genome 55897-55933 2 0.946
CP020378_7 7.14|1427601|37|CP020378|CRISPRCasFinder,CRT 1427601-1427637 37 NZ_CP020426 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence 74929-74965 2 0.946
CP020378_7 7.16|1427613|36|CP020378|PILER-CR 1427613-1427648 36 NZ_CP029155 Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence 99244-99279 2 0.944
CP020378_7 7.16|1427613|36|CP020378|PILER-CR 1427613-1427648 36 MF547662 Clostridioides phage LIBA6276, complete genome 53097-53132 2 0.944
CP020378_7 7.16|1427613|36|CP020378|PILER-CR 1427613-1427648 36 MF547663 Clostridioides phage LIBA2945, complete genome 52947-52982 2 0.944
CP020378_11 11.15|1936941|35|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936941-1936975 35 MK473382 Clostridium phage JD032, complete genome 15887-15921 2 0.943
CP020378_13 13.2|2885472|37|CP020378|PILER-CR,CRT 2885472-2885508 37 JX145342 Clostridium phage phiMMP04, complete genome 20116-20152 2 0.946
CP020378_13 13.3|2885538|38|CP020378|PILER-CR,CRT 2885538-2885575 38 NZ_CP020425 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence 29664-29701 2 0.947
CP020378_13 13.3|2885538|38|CP020378|PILER-CR,CRT 2885538-2885575 38 FN668942 Clostridium difficile BI1 plasmid pCDBI1, complete sequence 28308-28345 2 0.947
CP020378_13 13.3|2885538|38|CP020378|PILER-CR,CRT 2885538-2885575 38 NZ_CP011969 Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence 24986-25023 2 0.947
CP020378_13 13.5|2885473|36|CP020378|CRISPRCasFinder 2885473-2885508 36 JX145342 Clostridium phage phiMMP04, complete genome 20116-20151 2 0.944
CP020378_13 13.6|2885539|37|CP020378|CRISPRCasFinder 2885539-2885575 37 NZ_CP020425 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence 29665-29701 2 0.946
CP020378_13 13.6|2885539|37|CP020378|CRISPRCasFinder 2885539-2885575 37 FN668942 Clostridium difficile BI1 plasmid pCDBI1, complete sequence 28309-28345 2 0.946
CP020378_13 13.6|2885539|37|CP020378|CRISPRCasFinder 2885539-2885575 37 NZ_CP011969 Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence 24987-25023 2 0.946
CP020378_14 14.11|3099128|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3099128-3099163 36 NZ_CP020425 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence 34568-34603 2 0.944
CP020378_14 14.11|3099128|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3099128-3099163 36 FN668942 Clostridium difficile BI1 plasmid pCDBI1, complete sequence 33302-33337 2 0.944
CP020378_14 14.11|3099128|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3099128-3099163 36 NZ_CP011969 Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence 29890-29925 2 0.944
CP020378_19 19.9|3454464|36|CP020378|CRISPRCasFinder,CRT 3454464-3454499 36 KU057941 Clostridium phage CDSH1, complete genome 22355-22390 2 0.944
CP020378_19 19.9|3454464|36|CP020378|CRISPRCasFinder,CRT 3454464-3454499 36 HM568888 Clostridium phage phiCD38-2, complete genome 21851-21886 2 0.944
CP020378_19 19.9|3454464|36|CP020378|CRISPRCasFinder,CRT 3454464-3454499 36 NC_028958 Clostridium phage phiCD146, complete genome 21413-21448 2 0.944
CP020378_19 19.9|3454464|36|CP020378|CRISPRCasFinder,CRT 3454464-3454499 36 LN881738 Escherichia phage slur17, complete genome 39666-39701 2 0.944
CP020378_19 19.10|3454529|33|CP020378|CRISPRCasFinder,CRT 3454529-3454561 33 MF547662 Clostridioides phage LIBA6276, complete genome 115468-115500 2 0.939
CP020378_19 19.10|3454529|33|CP020378|CRISPRCasFinder,CRT 3454529-3454561 33 KU057941 Clostridium phage CDSH1, complete genome 27134-27166 2 0.939
CP020378_19 19.10|3454529|33|CP020378|CRISPRCasFinder,CRT 3454529-3454561 33 LN881738 Escherichia phage slur17, complete genome 34890-34922 2 0.939
CP020378_19 19.10|3454529|33|CP020378|CRISPRCasFinder,CRT 3454529-3454561 33 NC_028905 Clostridium phage phiCD111, complete genome 26908-26940 2 0.939
CP020378_19 19.10|3454529|33|CP020378|CRISPRCasFinder,CRT 3454529-3454561 33 HM568888 Clostridium phage phiCD38-2, complete genome 26630-26662 2 0.939
CP020378_19 19.10|3454529|33|CP020378|CRISPRCasFinder,CRT 3454529-3454561 33 NC_028958 Clostridium phage phiCD146, complete genome 26192-26224 2 0.939
CP020378_19 19.11|3454591|38|CP020378|CRISPRCasFinder,CRT 3454591-3454628 38 KU057941 Clostridium phage CDSH1, complete genome 26968-27005 2 0.947
CP020378_19 19.11|3454591|38|CP020378|CRISPRCasFinder,CRT 3454591-3454628 38 LN881738 Escherichia phage slur17, complete genome 35051-35088 2 0.947
CP020378_19 19.11|3454591|38|CP020378|CRISPRCasFinder,CRT 3454591-3454628 38 NC_028905 Clostridium phage phiCD111, complete genome 26742-26779 2 0.947
CP020378_19 19.11|3454591|38|CP020378|CRISPRCasFinder,CRT 3454591-3454628 38 HM568888 Clostridium phage phiCD38-2, complete genome 26464-26501 2 0.947
CP020378_19 19.11|3454591|38|CP020378|CRISPRCasFinder,CRT 3454591-3454628 38 NC_028958 Clostridium phage phiCD146, complete genome 26026-26063 2 0.947
CP020378_19 19.12|3454658|37|CP020378|CRISPRCasFinder,CRT 3454658-3454694 37 LN681542 Clostridium phage phiMMP03, complete genome 2419-2455 2 0.946
CP020378_19 19.12|3454658|37|CP020378|CRISPRCasFinder,CRT 3454658-3454694 37 HG531805 Clostridium phage CDMH1 complete genome 2332-2368 2 0.946
CP020378_19 19.12|3454658|37|CP020378|CRISPRCasFinder,CRT 3454658-3454694 37 NC_009231 Clostridium phage phiC2, complete genome 2450-2486 2 0.946
CP020378_19 19.12|3454658|37|CP020378|CRISPRCasFinder,CRT 3454658-3454694 37 LN681541 Clostridium phage phiMMP01, complete genome 2419-2455 2 0.946
CP020378_19 19.12|3454658|37|CP020378|CRISPRCasFinder,CRT 3454658-3454694 37 AY522340 Clostridium difficile phage phiC2 isolate RW11 portal protein and hypothetical protein genes, complete cds 89-125 2 0.946
CP020378_19 19.24|3455448|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455448-3455484 37 LN681534 Clostridium phage phiCD24-1, complete genome 24273-24309 2 0.946
CP020378_19 19.24|3455448|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455448-3455484 37 MN718463 Clostridium phage phiCDKH01, complete genome 44007-44043 2 0.946
CP020378_19 19.33|3456042|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456042-3456077 36 NC_028905 Clostridium phage phiCD111, complete genome 19397-19432 2 0.944
CP020378_19 19.35|3456174|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456174-3456210 37 MK473382 Clostridium phage JD032, complete genome 14177-14213 2 0.946
CP020378_19 19.52|3454464|37|CP020378|PILER-CR 3454464-3454500 37 NC_028905 Clostridium phage phiCD111, complete genome 22094-22130 2 0.946
CP020378_19 19.53|3454529|34|CP020378|PILER-CR 3454529-3454562 34 MF547662 Clostridioides phage LIBA6276, complete genome 115467-115500 2 0.941
CP020378_19 19.53|3454529|34|CP020378|PILER-CR 3454529-3454562 34 KU057941 Clostridium phage CDSH1, complete genome 27134-27167 2 0.941
CP020378_19 19.53|3454529|34|CP020378|PILER-CR 3454529-3454562 34 LN881738 Escherichia phage slur17, complete genome 34889-34922 2 0.941
CP020378_19 19.53|3454529|34|CP020378|PILER-CR 3454529-3454562 34 NC_028905 Clostridium phage phiCD111, complete genome 26908-26941 2 0.941
CP020378_19 19.53|3454529|34|CP020378|PILER-CR 3454529-3454562 34 HM568888 Clostridium phage phiCD38-2, complete genome 26630-26663 2 0.941
CP020378_19 19.53|3454529|34|CP020378|PILER-CR 3454529-3454562 34 NC_028958 Clostridium phage phiCD146, complete genome 26192-26225 2 0.941
CP020378_21 21.2|3824281|35|CP020378|CRISPRCasFinder 3824281-3824315 35 LN681539 Clostridium phage phiCD505, complete genome 15224-15258 2 0.943
CP020378_21 21.2|3824281|35|CP020378|CRISPRCasFinder 3824281-3824315 35 NC_048642 Clostridium phage CDKM9, complete genome 15162-15196 2 0.943
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 LN681539 Clostridium phage phiCD505, complete genome 42100-42138 2 0.949
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 AY855346 Clostridium difficile bacteriophage phi CD119, complete genome 43071-43109 2 0.949
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 NC_007917 Clostridium phage phi CD119, complete genome 43071-43109 2 0.949
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 LN681542 Clostridium phage phiMMP03, complete genome 45042-45080 2 0.949
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 NC_009231 Clostridium phage phiC2, complete genome 48580-48618 2 0.949
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 JX145341 Clostridium phage phiMMP02, complete genome 42167-42205 2 0.949
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 JX145341 Clostridium phage phiMMP02, complete genome 43320-43358 2 0.949
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 NC_048642 Clostridium phage CDKM9, complete genome 44255-44293 2 0.949
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 KX228400 Clostridium phage CDKM15, complete genome 45564-45602 2 0.949
CP020378_21 21.19|3824281|37|CP020378|PILER-CR 3824281-3824317 37 NC_011398 Clostridium phage phiCD27, complete genome 15173-15209 2 0.946
CP020378_21 21.19|3824281|37|CP020378|PILER-CR 3824281-3824317 37 KX228400 Clostridium phage CDKM15, complete genome 15316-15352 2 0.946
CP020378_7 7.1|1426740|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1426740-1426775 36 KX905163 Clostridioides phage phiSemix9P1, complete genome 16870-16905 3 0.917
CP020378_7 7.15|1427547|24|CP020378|PILER-CR 1427547-1427570 24 MN694672 Marine virus AFVG_250M611, complete genome 33391-33414 3 0.875
CP020378_7 7.16|1427613|36|CP020378|PILER-CR 1427613-1427648 36 NZ_CP020426 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence 74928-74963 3 0.917
CP020378_7 7.16|1427613|36|CP020378|PILER-CR 1427613-1427648 36 CP011970 Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence 47037-47072 3 0.917
CP020378_7 7.16|1427613|36|CP020378|PILER-CR 1427613-1427648 36 LN681537 Clostridium phage phiCD211, complete genome 55899-55934 3 0.917
CP020378_11 11.7|1936416|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936416-1936451 36 NZ_CP029155 Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence 64994-65029 3 0.917
CP020378_11 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936810-1936845 36 AY855346 Clostridium difficile bacteriophage phi CD119, complete genome 42195-42230 3 0.917
CP020378_11 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936810-1936845 36 NC_007917 Clostridium phage phi CD119, complete genome 42195-42230 3 0.917
CP020378_11 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936810-1936845 36 LN681539 Clostridium phage phiCD505, complete genome 42378-42413 3 0.917
CP020378_11 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936810-1936845 36 NC_028996 Clostridium phage phiCDHM19, complete genome 45208-45243 3 0.917
CP020378_11 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936810-1936845 36 LN681542 Clostridium phage phiMMP03, complete genome 44167-44202 3 0.917
CP020378_11 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936810-1936845 36 HG531805 Clostridium phage CDMH1 complete genome 45530-45565 3 0.917
CP020378_11 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936810-1936845 36 NC_009231 Clostridium phage phiC2, complete genome 47704-47739 3 0.917
CP020378_11 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936810-1936845 36 JX145341 Clostridium phage phiMMP02, complete genome 42445-42480 3 0.917
CP020378_11 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936810-1936845 36 NC_011398 Clostridium phage phiCD27, complete genome 43256-43291 3 0.917
CP020378_11 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936810-1936845 36 NC_048642 Clostridium phage CDKM9, complete genome 44533-44568 3 0.917
CP020378_11 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1936810-1936845 36 KX228400 Clostridium phage CDKM15, complete genome 44689-44724 3 0.917
CP020378_13 13.6|2885539|37|CP020378|CRISPRCasFinder 2885539-2885575 37 NZ_CP029156 Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence 17076-17112 3 0.919
CP020378_13 13.6|2885539|37|CP020378|CRISPRCasFinder 2885539-2885575 37 NZ_CP029153 Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence 11120-11156 3 0.919
CP020378_14 14.3|3098603|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098603-3098639 37 LN681539 Clostridium phage phiCD505, complete genome 14085-14121 3 0.919
CP020378_14 14.3|3098603|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098603-3098639 37 NC_048642 Clostridium phage CDKM9, complete genome 14023-14059 3 0.919
CP020378_19 19.52|3454464|37|CP020378|PILER-CR 3454464-3454500 37 LN881738 Escherichia phage slur17, complete genome 39666-39702 3 0.919
CP020378_19 19.52|3454464|37|CP020378|PILER-CR 3454464-3454500 37 KU057941 Clostridium phage CDSH1, complete genome 22354-22390 3 0.919
CP020378_19 19.52|3454464|37|CP020378|PILER-CR 3454464-3454500 37 HM568888 Clostridium phage phiCD38-2, complete genome 21850-21886 3 0.919
CP020378_19 19.52|3454464|37|CP020378|PILER-CR 3454464-3454500 37 NC_028958 Clostridium phage phiCD146, complete genome 21412-21448 3 0.919
CP020378_19 19.54|3454591|39|CP020378|PILER-CR 3454591-3454629 39 LN881738 Escherichia phage slur17, complete genome 35050-35088 3 0.923
CP020378_19 19.54|3454591|39|CP020378|PILER-CR 3454591-3454629 39 KU057941 Clostridium phage CDSH1, complete genome 26968-27006 3 0.923
CP020378_19 19.54|3454591|39|CP020378|PILER-CR 3454591-3454629 39 NC_028905 Clostridium phage phiCD111, complete genome 26742-26780 3 0.923
CP020378_19 19.54|3454591|39|CP020378|PILER-CR 3454591-3454629 39 HM568888 Clostridium phage phiCD38-2, complete genome 26464-26502 3 0.923
CP020378_19 19.54|3454591|39|CP020378|PILER-CR 3454591-3454629 39 NC_028958 Clostridium phage phiCD146, complete genome 26026-26064 3 0.923
CP020378_21 21.11|3824280|38|CP020378|CRT 3824280-3824317 38 NC_011398 Clostridium phage phiCD27, complete genome 15172-15209 3 0.921
CP020378_21 21.11|3824280|38|CP020378|CRT 3824280-3824317 38 KX228400 Clostridium phage CDKM15, complete genome 15315-15352 3 0.921
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 NC_048642 Clostridium phage CDKM9, complete genome 45409-45447 3 0.923
CP020378_21 21.19|3824281|37|CP020378|PILER-CR 3824281-3824317 37 LN681539 Clostridium phage phiCD505, complete genome 15224-15260 3 0.919
CP020378_21 21.19|3824281|37|CP020378|PILER-CR 3824281-3824317 37 NC_048642 Clostridium phage CDKM9, complete genome 15162-15198 3 0.919
CP020378_14 14.12|3099193|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3099193-3099228 36 NC_011398 Clostridium phage phiCD27, complete genome 16569-16604 4 0.889
CP020378_21 21.11|3824280|38|CP020378|CRT 3824280-3824317 38 LN681539 Clostridium phage phiCD505, complete genome 15223-15260 4 0.895
CP020378_21 21.11|3824280|38|CP020378|CRT 3824280-3824317 38 NC_048642 Clostridium phage CDKM9, complete genome 15161-15198 4 0.895
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 HG531805 Clostridium phage CDMH1 complete genome 45252-45290 4 0.897
CP020378_19 19.22|3455316|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455316-3455352 37 GU949551 Clostridium phage phiCD6356, complete genome 24929-24965 5 0.865
CP020378_19 19.22|3455316|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455316-3455352 37 JX145342 Clostridium phage phiMMP04, complete genome 20795-20831 5 0.865
CP020378_19 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455382-3455418 37 NC_028905 Clostridium phage phiCD111, complete genome 30326-30362 5 0.865
CP020378_19 19.29|3455777|38|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455777-3455814 38 NC_048665 Clostridium phage phiCDHM14, complete genome 9295-9332 5 0.868
CP020378_19 19.29|3455777|38|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455777-3455814 38 MK473382 Clostridium phage JD032, complete genome 25380-25417 5 0.868
CP020378_19 19.29|3455777|38|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455777-3455814 38 NC_028838 Clostridium phage phiCD506, complete genome 9721-9758 5 0.868
CP020378_19 19.29|3455777|38|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455777-3455814 38 HG796225 Clostridium phage phiCDHM13 complete genome 9263-9300 5 0.868
CP020378_19 19.29|3455777|38|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455777-3455814 38 LN681538 Clostridium phage phiCD481-1, complete genome 9748-9785 5 0.868
CP020378_19 19.29|3455777|38|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455777-3455814 38 HG798901 Clostridium phage phiCDHM11 complete genome 9262-9299 5 0.868
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 LN681542 Clostridium phage phiMMP03, complete genome 43889-43927 5 0.872
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 NC_009231 Clostridium phage phiC2, complete genome 47426-47464 5 0.872
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 KX228400 Clostridium phage CDKM15, complete genome 44411-44449 5 0.872
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 NC_028996 Clostridium phage phiCDHM19, complete genome 44930-44968 5 0.872
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 NC_011398 Clostridium phage phiCD27, complete genome 42978-43016 5 0.872
CP020378_4 4.1|144242|29|CP020378|CRISPRCasFinder 144242-144270 29 KY971610 Pseudomonas phage PspYZU05, complete genome 134239-134267 6 0.793
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 AY855346 Clostridium difficile bacteriophage phi CD119, complete genome 41918-41956 7 0.821
CP020378_21 21.14|3824502|39|CP020378|CRT 3824502-3824540 39 NC_007917 Clostridium phage phi CD119, complete genome 41918-41956 7 0.821
CP020378_7 7.5|1427003|38|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427003-1427040 38 KU057941 Clostridium phage CDSH1, complete genome 22443-22480 8 0.789
CP020378_7 7.5|1427003|38|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427003-1427040 38 NC_028905 Clostridium phage phiCD111, complete genome 22183-22220 8 0.789
CP020378_7 7.5|1427003|38|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427003-1427040 38 HM568888 Clostridium phage phiCD38-2, complete genome 21939-21976 8 0.789
CP020378_7 7.5|1427003|38|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427003-1427040 38 NC_028958 Clostridium phage phiCD146, complete genome 21501-21538 8 0.789
CP020378_7 7.5|1427003|38|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427003-1427040 38 LN881738 Escherichia phage slur17, complete genome 39576-39613 8 0.789
CP020378_10 10.7|1760187|36|CP020378|CRISPRCasFinder 1760187-1760222 36 MK448930 Streptococcus phage Javan406, complete genome 17755-17790 8 0.778
CP020378_10 10.3|1760186|37|CP020378|PILER-CR,CRT 1760186-1760222 37 MK448930 Streptococcus phage Javan406, complete genome 17754-17790 9 0.757
CP020378_11 11.17|1937071|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1937071-1937107 37 NZ_CP020425 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence 21108-21144 9 0.757
CP020378_11 11.17|1937071|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1937071-1937107 37 FN668942 Clostridium difficile BI1 plasmid pCDBI1, complete sequence 19753-19789 9 0.757
CP020378_11 11.17|1937071|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1937071-1937107 37 NZ_CP011969 Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence 16430-16466 9 0.757
CP020378_11 11.18|1937137|36|CP020378|PILER-CR,CRISPRCasFinder,CRT 1937137-1937172 36 NC_015390 Carnobacterium sp. 17-4 plasmid pCAR50, complete sequence 33747-33782 9 0.75
CP020378_19 19.4|3454132|37|CP020378|CRISPRCasFinder,CRT 3454132-3454168 37 JN371769 Synechococcus phage metaG-MbCM1, complete genome 97464-97500 9 0.757
CP020378_19 19.10|3454529|33|CP020378|CRISPRCasFinder,CRT 3454529-3454561 33 NZ_CP046302 Staphylococcus hominis strain FDAARGOS_747 plasmid unnamed2, complete sequence 12220-12252 9 0.727
CP020378_19 19.10|3454529|33|CP020378|CRISPRCasFinder,CRT 3454529-3454561 33 MT074146 Bacteroides phage SJC03, complete genome 71744-71776 9 0.727
CP020378_19 19.19|3455118|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455118-3455154 37 MN693953 Marine virus AFVG_250M577, complete genome 38694-38730 9 0.757
CP020378_19 19.39|3456438|36|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456438-3456473 36 NZ_CP013238 Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence 46390-46425 9 0.75
CP020378_19 19.53|3454529|34|CP020378|PILER-CR 3454529-3454562 34 NZ_CP020004 Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed2, complete sequence 37459-37492 9 0.735
CP020378_19 19.53|3454529|34|CP020378|PILER-CR 3454529-3454562 34 NC_048762 Bacillus phage vB_BtS_B83, complete genome 6545-6578 9 0.735
CP020378_19 19.53|3454529|34|CP020378|PILER-CR 3454529-3454562 34 MT074146 Bacteroides phage SJC03, complete genome 71744-71777 9 0.735
CP020378_20 20.1|3737461|38|CP020378|CRISPRCasFinder 3737461-3737498 38 NZ_CP013716 Staphylococcus equorum strain C2014 plasmid pC2014-2, complete sequence 38348-38385 9 0.763
CP020378_11 11.17|1937071|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1937071-1937107 37 MT932329 Campylobacter phage F379, complete genome 82494-82530 10 0.73
CP020378_11 11.17|1937071|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1937071-1937107 37 MT446421 UNVERIFIED: Escherichia virus TH55, complete genome 110583-110619 10 0.73
CP020378_11 11.17|1937071|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1937071-1937107 37 MT533174 Escherichia phage CJ20, complete genome 146195-146231 10 0.73
CP020378_11 11.17|1937071|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1937071-1937107 37 FN667788 Campylobacter phage CP220, complete genome 77257-77293 10 0.73
CP020378_19 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455382-3455418 37 NC_016820 Leuconostoc mesenteroides subsp. mesenteroides J18 plasmid pKLE02, complete sequence 9475-9511 10 0.73
CP020378_19 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455382-3455418 37 NZ_AP017937 Leuconostoc mesenteroides strain LK-151 plasmid pLm151-a, complete sequence 19940-19976 10 0.73
CP020378_19 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455382-3455418 37 NZ_CP014602 Leuconostoc mesenteroides subsp. mesenteroides strain DRC0211 plasmid pDSK2, complete sequence 15194-15230 10 0.73
CP020378_19 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455382-3455418 37 NZ_CP014602 Leuconostoc mesenteroides subsp. mesenteroides strain DRC0211 plasmid pDSK2, complete sequence 50622-50658 10 0.73
CP020378_19 19.28|3455711|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455711-3455747 37 MN693392 Marine virus AFVG_25M95, complete genome 33202-33238 10 0.73
CP020378_19 19.43|3456699|35|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456699-3456733 35 AP014374 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S42-C54, *** SEQUENCING IN PROGRESS *** 20462-20496 10 0.714
CP020378_19 19.53|3454529|34|CP020378|PILER-CR 3454529-3454562 34 NZ_CP046302 Staphylococcus hominis strain FDAARGOS_747 plasmid unnamed2, complete sequence 12219-12252 10 0.706
CP020378_7 7.9|1427271|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1427271-1427307 37 NZ_CP013615 Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence 356056-356092 11 0.703
CP020378_11 11.17|1937071|37|CP020378|PILER-CR,CRISPRCasFinder,CRT 1937071-1937107 37 CP011075 Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence 698312-698348 11 0.703
CP020378_13 13.4|2885408|35|CP020378|CRISPRCasFinder 2885408-2885442 35 NZ_CP031276 Staphylococcus xylosus strain 2 plasmid unnamed1, complete sequence 42154-42188 11 0.686
CP020378_14 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098933-3098966 34 NC_021727 Acinetobacter baumannii BJAB07104 plasmid p1BJAB07104, complete sequence 47069-47102 11 0.676
CP020378_14 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098933-3098966 34 NZ_CP018422 Acinetobacter baumannii strain XDR-BJ83 isolate male patient plasmid pBJ83, complete sequence 5923-5956 11 0.676
CP020378_14 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098933-3098966 34 NC_017848 Acinetobacter baumannii MDR-TJ plasmid pABTJ1, complete sequence 39097-39130 11 0.676
CP020378_14 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098933-3098966 34 NZ_KM922672 Acinetobacter baumannii strain A221 plasmid pAZJ221, complete sequence 47069-47102 11 0.676
CP020378_14 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098933-3098966 34 NC_021731 Acinetobacter baumannii BJAB0868 plasmid p2BJAB0868, complete sequence 47069-47102 11 0.676
CP020378_14 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098933-3098966 34 NZ_CP018144 Acinetobacter baumannii strain HRAB-85 plasmid unnamed, complete sequence 2499-2532 11 0.676
CP020378_14 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR 3098933-3098966 34 NZ_MK386682 Acinetobacter baumannii strain ABAY10001 plasmid pABAY10001_1C, complete sequence 17640-17673 11 0.676
CP020378_19 19.32|3455976|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3455976-3456012 37 MN694760 Marine virus AFVG_250M661, complete genome 45652-45688 11 0.703
CP020378_19 19.41|3456567|38|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456567-3456604 38 NZ_MN602039 Staphylococcus capitis strain APC2923 plasmid pJOS_01, complete sequence 9535-9572 11 0.711
CP020378_19 19.45|3456829|37|CP020378|CRISPRCasFinder,CRT,PILER-CR 3456829-3456865 37 NZ_AP019826 Leptotrichia hofstadii strain JCM16775 plasmid pJCM16775-3, complete sequence 3014-3050 11 0.703

1. spacer 4.1|144242|29|CP020378|CRISPRCasFinder matches to NZ_CP033215 (Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0 

tgtaataagttaaagcaatatgaatcaac	CRISPR spacer
tgtaataagttaaagcaatatgaatcaac	Protospacer
*****************************

2. spacer 7.1|1426740|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020425 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0 

tgtaaatgatgatgttaaaaacataatagttgatga	CRISPR spacer
tgtaaatgatgatgttaaaaacataatagttgatga	Protospacer
************************************

3. spacer 7.1|1426740|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029156 (Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0 

tgtaaatgatgatgttaaaaacataatagttgatga	CRISPR spacer
tgtaaatgatgatgttaaaaacataatagttgatga	Protospacer
************************************

4. spacer 7.1|1426740|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029153 (Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0 

tgtaaatgatgatgttaaaaacataatagttgatga	CRISPR spacer
tgtaaatgatgatgttaaaaacataatagttgatga	Protospacer
************************************

5. spacer 7.1|1426740|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 0, identity: 1.0 

tgtaaatgatgatgttaaaaacataatagttgatga	CRISPR spacer
tgtaaatgatgatgttaaaaacataatagttgatga	Protospacer
************************************

6. spacer 7.1|1426740|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011969 (Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0 

tgtaaatgatgatgttaaaaacataatagttgatga	CRISPR spacer
tgtaaatgatgatgttaaaaacataatagttgatga	Protospacer
************************************

7. spacer 7.2|1426805|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020425 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0 

tcaactaaatctattgtcgttccaggtggtactgcta	CRISPR spacer
tcaactaaatctattgtcgttccaggtggtactgcta	Protospacer
*************************************

8. spacer 7.2|1426805|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 0, identity: 1.0 

tcaactaaatctattgtcgttccaggtggtactgcta	CRISPR spacer
tcaactaaatctattgtcgttccaggtggtactgcta	Protospacer
*************************************

9. spacer 7.2|1426805|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011969 (Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0 

tcaactaaatctattgtcgttccaggtggtactgcta	CRISPR spacer
tcaactaaatctattgtcgttccaggtggtactgcta	Protospacer
*************************************

10. spacer 7.5|1427003|38|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0 

aattctatttaaatagtttatattttttattatatcaa	CRISPR spacer
aattctatttaaatagtttatattttttattatatcaa	Protospacer
**************************************

11. spacer 7.5|1427003|38|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 0, identity: 1.0 

aattctatttaaatagtttatattttttattatatcaa	CRISPR spacer
aattctatttaaatagtttatattttttattatatcaa	Protospacer
**************************************

12. spacer 7.5|1427003|38|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 0, identity: 1.0 

aattctatttaaatagtttatattttttattatatcaa	CRISPR spacer
aattctatttaaatagtttatattttttattatatcaa	Protospacer
**************************************

13. spacer 7.7|1427139|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0 

tcggttaaatcacgaagtatttcgtttactgattcag	CRISPR spacer
tcggttaaatcacgaagtatttcgtttactgattcag	Protospacer
*************************************

14. spacer 7.7|1427139|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 0, identity: 1.0 

tcggttaaatcacgaagtatttcgtttactgattcag	CRISPR spacer
tcggttaaatcacgaagtatttcgtttactgattcag	Protospacer
*************************************

15. spacer 7.7|1427139|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 0, identity: 1.0 

tcggttaaatcacgaagtatttcgtttactgattcag	CRISPR spacer
tcggttaaatcacgaagtatttcgtttactgattcag	Protospacer
*************************************

16. spacer 10.5|1760054|38|CP020378|CRISPRCasFinder matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 0, identity: 1.0 

ctcttacgctttttcaatcacttttttccttgctaaaa	CRISPR spacer
ctcttacgctttttcaatcacttttttccttgctaaaa	Protospacer
**************************************

17. spacer 10.5|1760054|38|CP020378|CRISPRCasFinder matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 0, identity: 1.0 

ctcttacgctttttcaatcacttttttccttgctaaaa	CRISPR spacer
ctcttacgctttttcaatcacttttttccttgctaaaa	Protospacer
**************************************

18. spacer 10.5|1760054|38|CP020378|CRISPRCasFinder matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 0, identity: 1.0 

ctcttacgctttttcaatcacttttttccttgctaaaa	CRISPR spacer
ctcttacgctttttcaatcacttttttccttgctaaaa	Protospacer
**************************************

19. spacer 11.2|1936084|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 0, identity: 1.0 

ttaagtgatagaatttcgtctcaattgagcaaagaat	CRISPR spacer
ttaagtgatagaatttcgtctcaattgagcaaagaat	Protospacer
*************************************

20. spacer 11.5|1936284|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 0, identity: 1.0 

tgtcattttttcacacctctcttatttatataataac	CRISPR spacer
tgtcattttttcacacctctcttatttatataataac	Protospacer
*************************************

21. spacer 11.5|1936284|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 0, identity: 1.0 

tgtcattttttcacacctctcttatttatataataac	CRISPR spacer
tgtcattttttcacacctctcttatttatataataac	Protospacer
*************************************

22. spacer 11.5|1936284|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 0, identity: 1.0 

tgtcattttttcacacctctcttatttatataataac	CRISPR spacer
tgtcattttttcacacctctcttatttatataataac	Protospacer
*************************************

23. spacer 11.5|1936284|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 0, identity: 1.0 

tgtcattttttcacacctctcttatttatataataac	CRISPR spacer
tgtcattttttcacacctctcttatttatataataac	Protospacer
*************************************

24. spacer 11.5|1936284|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 0, identity: 1.0 

tgtcattttttcacacctctcttatttatataataac	CRISPR spacer
tgtcattttttcacacctctcttatttatataataac	Protospacer
*************************************

25. spacer 11.6|1936350|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 0, identity: 1.0 

ggtgtatttatgttggcaagaagcgttgatgaaatga	CRISPR spacer
ggtgtatttatgttggcaagaagcgttgatgaaatga	Protospacer
*************************************

26. spacer 11.6|1936350|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 0, identity: 1.0 

ggtgtatttatgttggcaagaagcgttgatgaaatga	CRISPR spacer
ggtgtatttatgttggcaagaagcgttgatgaaatga	Protospacer
*************************************

27. spacer 11.6|1936350|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 0, identity: 1.0 

ggtgtatttatgttggcaagaagcgttgatgaaatga	CRISPR spacer
ggtgtatttatgttggcaagaagcgttgatgaaatga	Protospacer
*************************************

28. spacer 11.9|1936546|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0 

tcggttaaatcacgaagtatttcgtttactgattcag	CRISPR spacer
tcggttaaatcacgaagtatttcgtttactgattcag	Protospacer
*************************************

29. spacer 11.9|1936546|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 0, identity: 1.0 

tcggttaaatcacgaagtatttcgtttactgattcag	CRISPR spacer
tcggttaaatcacgaagtatttcgtttactgattcag	Protospacer
*************************************

30. spacer 11.9|1936546|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 0, identity: 1.0 

tcggttaaatcacgaagtatttcgtttactgattcag	CRISPR spacer
tcggttaaatcacgaagtatttcgtttactgattcag	Protospacer
*************************************

31. spacer 11.14|1936875|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 0, identity: 1.0 

gtataaattgaaatcagaaggttttattattgattta	CRISPR spacer
gtataaattgaaatcagaaggttttattattgattta	Protospacer
*************************************

32. spacer 11.15|1936941|35|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 0, identity: 1.0 

ctattaactttaggtattttgtaagatttttcctc	CRISPR spacer
ctattaactttaggtattttgtaagatttttcctc	Protospacer
***********************************

33. spacer 11.16|1937005|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 0, identity: 1.0 

catgaacattctctataatatgtgtgttcttcaacta	CRISPR spacer
catgaacattctctataatatgtgtgttcttcaacta	Protospacer
*************************************

34. spacer 11.16|1937005|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 0, identity: 1.0 

catgaacattctctataatatgtgtgttcttcaacta	CRISPR spacer
catgaacattctctataatatgtgtgttcttcaacta	Protospacer
*************************************

35. spacer 11.16|1937005|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 0, identity: 1.0 

catgaacattctctataatatgtgtgttcttcaacta	CRISPR spacer
catgaacattctctataatatgtgtgttcttcaacta	Protospacer
*************************************

36. spacer 14.4|3098669|38|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 0, identity: 1.0 

cagcaaaaaagtaatgaacttgctacagcaacacaaaa	CRISPR spacer
cagcaaaaaagtaatgaacttgctacagcaacacaaaa	Protospacer
**************************************

37. spacer 14.6|3098801|38|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 0, identity: 1.0 

tttaaaattctagctatctttaaagctgtacgaatgtt	CRISPR spacer
tttaaaattctagctatctttaaagctgtacgaatgtt	Protospacer
**************************************

38. spacer 14.6|3098801|38|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 0, identity: 1.0 

tttaaaattctagctatctttaaagctgtacgaatgtt	CRISPR spacer
tttaaaattctagctatctttaaagctgtacgaatgtt	Protospacer
**************************************

39. spacer 14.6|3098801|38|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 0, identity: 1.0 

tttaaaattctagctatctttaaagctgtacgaatgtt	CRISPR spacer
tttaaaattctagctatctttaaagctgtacgaatgtt	Protospacer
**************************************

40. spacer 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 0, identity: 1.0 

ctctgggatgttgatagaacctattttgataagg	CRISPR spacer
ctctgggatgttgatagaacctattttgataagg	Protospacer
**********************************

41. spacer 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 0, identity: 1.0 

ctctgggatgttgatagaacctattttgataagg	CRISPR spacer
ctctgggatgttgatagaacctattttgataagg	Protospacer
**********************************

42. spacer 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 0, identity: 1.0 

ctctgggatgttgatagaacctattttgataagg	CRISPR spacer
ctctgggatgttgatagaacctattttgataagg	Protospacer
**********************************

43. spacer 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 0, identity: 1.0 

ctctgggatgttgatagaacctattttgataagg	CRISPR spacer
ctctgggatgttgatagaacctattttgataagg	Protospacer
**********************************

44. spacer 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 0, identity: 1.0 

ctctgggatgttgatagaacctattttgataagg	CRISPR spacer
ctctgggatgttgatagaacctattttgataagg	Protospacer
**********************************

45. spacer 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 0, identity: 1.0 

ctctgggatgttgatagaacctattttgataagg	CRISPR spacer
ctctgggatgttgatagaacctattttgataagg	Protospacer
**********************************

46. spacer 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 0, identity: 1.0 

ctctgggatgttgatagaacctattttgataagg	CRISPR spacer
ctctgggatgttgatagaacctattttgataagg	Protospacer
**********************************

47. spacer 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 0, identity: 1.0 

ctctgggatgttgatagaacctattttgataagg	CRISPR spacer
ctctgggatgttgatagaacctattttgataagg	Protospacer
**********************************

48. spacer 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 0, identity: 1.0 

ctctgggatgttgatagaacctattttgataagg	CRISPR spacer
ctctgggatgttgatagaacctattttgataagg	Protospacer
**********************************

49. spacer 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 0, identity: 1.0 

ctctgggatgttgatagaacctattttgataagg	CRISPR spacer
ctctgggatgttgatagaacctattttgataagg	Protospacer
**********************************

50. spacer 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 0, identity: 1.0 

ctctgggatgttgatagaacctattttgataagg	CRISPR spacer
ctctgggatgttgatagaacctattttgataagg	Protospacer
**********************************

51. spacer 14.10|3099062|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029156 (Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0 

catcatatatatttattgttcccacatttatagaata	CRISPR spacer
catcatatatatttattgttcccacatttatagaata	Protospacer
*************************************

52. spacer 14.10|3099062|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029153 (Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0 

catcatatatatttattgttcccacatttatagaata	CRISPR spacer
catcatatatatttattgttcccacatttatagaata	Protospacer
*************************************

53. spacer 14.12|3099193|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 0, identity: 1.0 

ccttatagatgttataatttaattataaattacatg	CRISPR spacer
ccttatagatgttataatttaattataaattacatg	Protospacer
************************************

54. spacer 14.12|3099193|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 0, identity: 1.0 

ccttatagatgttataatttaattataaattacatg	CRISPR spacer
ccttatagatgttataatttaattataaattacatg	Protospacer
************************************

55. spacer 14.14|3099324|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 0, identity: 1.0 

ttacagataaggggttgttaagtgctgatagtgtta	CRISPR spacer
ttacagataaggggttgttaagtgctgatagtgtta	Protospacer
************************************

56. spacer 14.14|3099324|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 0, identity: 1.0 

ttacagataaggggttgttaagtgctgatagtgtta	CRISPR spacer
ttacagataaggggttgttaagtgctgatagtgtta	Protospacer
************************************

57. spacer 14.14|3099324|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 0, identity: 1.0 

ttacagataaggggttgttaagtgctgatagtgtta	CRISPR spacer
ttacagataaggggttgttaagtgctgatagtgtta	Protospacer
************************************

58. spacer 19.7|3454333|35|CP020378|CRISPRCasFinder,CRT matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 0, identity: 1.0 

actgcaatggataatataaacgatcttaaaaaaga	CRISPR spacer
actgcaatggataatataaacgatcttaaaaaaga	Protospacer
***********************************

59. spacer 19.14|3454790|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 0, identity: 1.0 

ctcttgcaaaatatcctttttctttcaaacaaaaagt	CRISPR spacer
ctcttgcaaaatatcctttttctttcaaacaaaaagt	Protospacer
*************************************

60. spacer 19.19|3455118|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 0, identity: 1.0 

aaggaaaaagaaataataaaagaatttactccgaaaa	CRISPR spacer
aaggaaaaagaaataataaaagaatttactccgaaaa	Protospacer
*************************************

61. spacer 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 0, identity: 1.0 

aagttttgcatgtaccagcgagctaaaaatttttctc	CRISPR spacer
aagttttgcatgtaccagcgagctaaaaatttttctc	Protospacer
*************************************

62. spacer 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 0, identity: 1.0 

aagttttgcatgtaccagcgagctaaaaatttttctc	CRISPR spacer
aagttttgcatgtaccagcgagctaaaaatttttctc	Protospacer
*************************************

63. spacer 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 0, identity: 1.0 

aagttttgcatgtaccagcgagctaaaaatttttctc	CRISPR spacer
aagttttgcatgtaccagcgagctaaaaatttttctc	Protospacer
*************************************

64. spacer 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 0, identity: 1.0 

aagttttgcatgtaccagcgagctaaaaatttttctc	CRISPR spacer
aagttttgcatgtaccagcgagctaaaaatttttctc	Protospacer
*************************************

65. spacer 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 0, identity: 1.0 

aagttttgcatgtaccagcgagctaaaaatttttctc	CRISPR spacer
aagttttgcatgtaccagcgagctaaaaatttttctc	Protospacer
*************************************

66. spacer 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 0, identity: 1.0 

aagttttgcatgtaccagcgagctaaaaatttttctc	CRISPR spacer
aagttttgcatgtaccagcgagctaaaaatttttctc	Protospacer
*************************************

67. spacer 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 0, identity: 1.0 

aagttttgcatgtaccagcgagctaaaaatttttctc	CRISPR spacer
aagttttgcatgtaccagcgagctaaaaatttttctc	Protospacer
*************************************

68. spacer 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 0, identity: 1.0 

aagttttgcatgtaccagcgagctaaaaatttttctc	CRISPR spacer
aagttttgcatgtaccagcgagctaaaaatttttctc	Protospacer
*************************************

69. spacer 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 0, identity: 1.0 

aagttttgcatgtaccagcgagctaaaaatttttctc	CRISPR spacer
aagttttgcatgtaccagcgagctaaaaatttttctc	Protospacer
*************************************

70. spacer 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 0, identity: 1.0 

aagttttgcatgtaccagcgagctaaaaatttttctc	CRISPR spacer
aagttttgcatgtaccagcgagctaaaaatttttctc	Protospacer
*************************************

71. spacer 19.22|3455316|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 0, identity: 1.0 

gaaaaggctaagaatgaatgactttttctataaaaga	CRISPR spacer
gaaaaggctaagaatgaatgactttttctataaaaga	Protospacer
*************************************

72. spacer 19.22|3455316|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 0, identity: 1.0 

gaaaaggctaagaatgaatgactttttctataaaaga	CRISPR spacer
gaaaaggctaagaatgaatgactttttctataaaaga	Protospacer
*************************************

73. spacer 19.22|3455316|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 0, identity: 1.0 

gaaaaggctaagaatgaatgactttttctataaaaga	CRISPR spacer
gaaaaggctaagaatgaatgactttttctataaaaga	Protospacer
*************************************

74. spacer 19.22|3455316|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 0, identity: 1.0 

gaaaaggctaagaatgaatgactttttctataaaaga	CRISPR spacer
gaaaaggctaagaatgaatgactttttctataaaaga	Protospacer
*************************************

75. spacer 19.22|3455316|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 0, identity: 1.0 

gaaaaggctaagaatgaatgactttttctataaaaga	CRISPR spacer
gaaaaggctaagaatgaatgactttttctataaaaga	Protospacer
*************************************

76. spacer 19.22|3455316|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 0, identity: 1.0 

gaaaaggctaagaatgaatgactttttctataaaaga	CRISPR spacer
gaaaaggctaagaatgaatgactttttctataaaaga	Protospacer
*************************************

77. spacer 19.22|3455316|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 0, identity: 1.0 

gaaaaggctaagaatgaatgactttttctataaaaga	CRISPR spacer
gaaaaggctaagaatgaatgactttttctataaaaga	Protospacer
*************************************

78. spacer 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 0, identity: 1.0 

agagtggtttaagaaaataagttatttttcaaaacat	CRISPR spacer
agagtggtttaagaaaataagttatttttcaaaacat	Protospacer
*************************************

79. spacer 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 0, identity: 1.0 

agagtggtttaagaaaataagttatttttcaaaacat	CRISPR spacer
agagtggtttaagaaaataagttatttttcaaaacat	Protospacer
*************************************

80. spacer 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 0, identity: 1.0 

agagtggtttaagaaaataagttatttttcaaaacat	CRISPR spacer
agagtggtttaagaaaataagttatttttcaaaacat	Protospacer
*************************************

81. spacer 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 0, identity: 1.0 

agagtggtttaagaaaataagttatttttcaaaacat	CRISPR spacer
agagtggtttaagaaaataagttatttttcaaaacat	Protospacer
*************************************

82. spacer 19.29|3455777|38|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 0, identity: 1.0 

ccattatacattgtttcaagcttcttttgtacttcttt	CRISPR spacer
ccattatacattgtttcaagcttcttttgtacttcttt	Protospacer
**************************************

83. spacer 19.30|3455844|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 0, identity: 1.0 

atatggctacaagttttgaaagtaaaaatgtaataaa	CRISPR spacer
atatggctacaagttttgaaagtaaaaatgtaataaa	Protospacer
*************************************

84. spacer 19.30|3455844|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 0, identity: 1.0 

atatggctacaagttttgaaagtaaaaatgtaataaa	CRISPR spacer
atatggctacaagttttgaaagtaaaaatgtaataaa	Protospacer
*************************************

85. spacer 19.30|3455844|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 0, identity: 1.0 

atatggctacaagttttgaaagtaaaaatgtaataaa	CRISPR spacer
atatggctacaagttttgaaagtaaaaatgtaataaa	Protospacer
*************************************

86. spacer 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 0, identity: 1.0 

aaacgacattaatatttagttaatgaaacttcactct	CRISPR spacer
aaacgacattaatatttagttaatgaaacttcactct	Protospacer
*************************************

87. spacer 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 0, identity: 1.0 

aaacgacattaatatttagttaatgaaacttcactct	CRISPR spacer
aaacgacattaatatttagttaatgaaacttcactct	Protospacer
*************************************

88. spacer 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 0, identity: 1.0 

aaacgacattaatatttagttaatgaaacttcactct	CRISPR spacer
aaacgacattaatatttagttaatgaaacttcactct	Protospacer
*************************************

89. spacer 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 0, identity: 1.0 

aaacgacattaatatttagttaatgaaacttcactct	CRISPR spacer
aaacgacattaatatttagttaatgaaacttcactct	Protospacer
*************************************

90. spacer 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN681542 (Clostridium phage phiMMP03, complete genome) position: , mismatch: 0, identity: 1.0 

aaacgacattaatatttagttaatgaaacttcactct	CRISPR spacer
aaacgacattaatatttagttaatgaaacttcactct	Protospacer
*************************************

91. spacer 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 0, identity: 1.0 

aaacgacattaatatttagttaatgaaacttcactct	CRISPR spacer
aaacgacattaatatttagttaatgaaacttcactct	Protospacer
*************************************

92. spacer 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 0, identity: 1.0 

aaacgacattaatatttagttaatgaaacttcactct	CRISPR spacer
aaacgacattaatatttagttaatgaaacttcactct	Protospacer
*************************************

93. spacer 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 0, identity: 1.0 

aaacgacattaatatttagttaatgaaacttcactct	CRISPR spacer
aaacgacattaatatttagttaatgaaacttcactct	Protospacer
*************************************

94. spacer 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 0, identity: 1.0 

aaacgacattaatatttagttaatgaaacttcactct	CRISPR spacer
aaacgacattaatatttagttaatgaaacttcactct	Protospacer
*************************************

95. spacer 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 0, identity: 1.0 

aaacgacattaatatttagttaatgaaacttcactct	CRISPR spacer
aaacgacattaatatttagttaatgaaacttcactct	Protospacer
*************************************

96. spacer 19.31|3455910|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 0, identity: 1.0 

aaacgacattaatatttagttaatgaaacttcactct	CRISPR spacer
aaacgacattaatatttagttaatgaaacttcactct	Protospacer
*************************************

97. spacer 19.33|3456042|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 0, identity: 1.0 

agacacacctcgcacagatgcagaaagttccaattg	CRISPR spacer
agacacacctcgcacagatgcagaaagttccaattg	Protospacer
************************************

98. spacer 19.33|3456042|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 0, identity: 1.0 

agacacacctcgcacagatgcagaaagttccaattg	CRISPR spacer
agacacacctcgcacagatgcagaaagttccaattg	Protospacer
************************************

99. spacer 19.33|3456042|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 0, identity: 1.0 

agacacacctcgcacagatgcagaaagttccaattg	CRISPR spacer
agacacacctcgcacagatgcagaaagttccaattg	Protospacer
************************************

100. spacer 19.33|3456042|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 0, identity: 1.0 

agacacacctcgcacagatgcagaaagttccaattg	CRISPR spacer
agacacacctcgcacagatgcagaaagttccaattg	Protospacer
************************************

101. spacer 19.36|3456240|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 0, identity: 1.0 

cttatttcaaagaaagatattgttataaaacaaaaaa	CRISPR spacer
cttatttcaaagaaagatattgttataaaacaaaaaa	Protospacer
*************************************

102. spacer 19.39|3456438|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN681542 (Clostridium phage phiMMP03, complete genome) position: , mismatch: 0, identity: 1.0 

attttcaactcatcatctccaatatcatctttactt	CRISPR spacer
attttcaactcatcatctccaatatcatctttactt	Protospacer
************************************

103. spacer 19.39|3456438|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 0, identity: 1.0 

attttcaactcatcatctccaatatcatctttactt	CRISPR spacer
attttcaactcatcatctccaatatcatctttactt	Protospacer
************************************

104. spacer 19.39|3456438|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 0, identity: 1.0 

attttcaactcatcatctccaatatcatctttactt	CRISPR spacer
attttcaactcatcatctccaatatcatctttactt	Protospacer
************************************

105. spacer 19.39|3456438|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 0, identity: 1.0 

attttcaactcatcatctccaatatcatctttactt	CRISPR spacer
attttcaactcatcatctccaatatcatctttactt	Protospacer
************************************

106. spacer 19.39|3456438|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN681541 (Clostridium phage phiMMP01, complete genome) position: , mismatch: 0, identity: 1.0 

attttcaactcatcatctccaatatcatctttactt	CRISPR spacer
attttcaactcatcatctccaatatcatctttactt	Protospacer
************************************

107. spacer 19.42|3456634|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 0, identity: 1.0 

atatctttgtactcttgattttctagttttgatata	CRISPR spacer
atatctttgtactcttgattttctagttttgatata	Protospacer
************************************

108. spacer 19.42|3456634|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 0, identity: 1.0 

atatctttgtactcttgattttctagttttgatata	CRISPR spacer
atatctttgtactcttgattttctagttttgatata	Protospacer
************************************

109. spacer 21.6|3824569|35|CP020378|CRISPRCasFinder matches to NZ_CP020425 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0 

gcagcaggattatatgaagcagatggtggagcatg	CRISPR spacer
gcagcaggattatatgaagcagatggtggagcatg	Protospacer
***********************************

110. spacer 21.6|3824569|35|CP020378|CRISPRCasFinder matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 0, identity: 1.0 

gcagcaggattatatgaagcagatggtggagcatg	CRISPR spacer
gcagcaggattatatgaagcagatggtggagcatg	Protospacer
***********************************

111. spacer 21.6|3824569|35|CP020378|CRISPRCasFinder matches to NZ_CP011969 (Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0 

gcagcaggattatatgaagcagatggtggagcatg	CRISPR spacer
gcagcaggattatatgaagcagatggtggagcatg	Protospacer
***********************************

112. spacer 21.6|3824569|35|CP020378|CRISPRCasFinder matches to NZ_CP029156 (Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0 

gcagcaggattatatgaagcagatggtggagcatg	CRISPR spacer
gcagcaggattatatgaagcagatggtggagcatg	Protospacer
***********************************

113. spacer 21.6|3824569|35|CP020378|CRISPRCasFinder matches to NZ_CP029153 (Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0 

gcagcaggattatatgaagcagatggtggagcatg	CRISPR spacer
gcagcaggattatatgaagcagatggtggagcatg	Protospacer
***********************************

114. spacer 2.1|128816|34|CP020378|CRISPRCasFinder matches to NZ_CP033215 (Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.971 

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacacatgtgaagtttgtttgttggcgc	Protospacer
*********.************************

115. spacer 3.1|135706|34|CP020378|CRISPRCasFinder matches to NZ_CP033215 (Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.971 

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacacatgtgaagtttgtttgttggcgc	Protospacer
*********.************************

116. spacer 5.1|151711|34|CP020378|CRISPRCasFinder matches to NZ_CP033215 (Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.971 

aaactgaacgcatgtgaagtttgtttgttggcgc	CRISPR spacer
aaactgaacacatgtgaagtttgtttgttggcgc	Protospacer
*********.************************

117. spacer 7.8|1427205|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 1, identity: 0.973 

acaaatatagtatatcaaaggaggaaaataatggaaa	CRISPR spacer
acaaatatagtatatcaaaggaggaaaataatggcaa	Protospacer
********************************** **

118. spacer 7.8|1427205|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 1, identity: 0.973 

acaaatatagtatatcaaaggaggaaaataatggaaa	CRISPR spacer
acaaatatagtatatcaaaggaggaaaataatggcaa	Protospacer
********************************** **

119. spacer 7.8|1427205|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to LN681542 (Clostridium phage phiMMP03, complete genome) position: , mismatch: 1, identity: 0.973 

acaaatatagtatatcaaaggaggaaaataatggaaa	CRISPR spacer
acaaatatagtatatcaaaggaggaaaataatggcaa	Protospacer
********************************** **

120. spacer 7.8|1427205|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 1, identity: 0.973 

acaaatatagtatatcaaaggaggaaaataatggaaa	CRISPR spacer
acaaatatagtatatcaaaggaggaaaataatggcaa	Protospacer
********************************** **

121. spacer 7.8|1427205|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to LN681541 (Clostridium phage phiMMP01, complete genome) position: , mismatch: 1, identity: 0.973 

acaaatatagtatatcaaaggaggaaaataatggaaa	CRISPR spacer
acaaatatagtatatcaaaggaggaaaataatggcaa	Protospacer
********************************** **

122. spacer 7.8|1427205|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 1, identity: 0.973 

acaaatatagtatatcaaaggaggaaaataatggaaa	CRISPR spacer
acaaatatagtatatcaaaggaggaaaataatggcaa	Protospacer
********************************** **

123. spacer 7.9|1427271|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 1, identity: 0.973 

ccaactaactcttcataatccatactcgttaactttg	CRISPR spacer
ccaactaactctttataatccatactcgttaactttg	Protospacer
*************.***********************

124. spacer 7.14|1427601|37|CP020378|CRISPRCasFinder,CRT matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.973 

atagatgctccccaacataaaataccttcaaagacag	CRISPR spacer
atagatgctccccaacataaaataccttcaaaaacag	Protospacer
********************************.****

125. spacer 7.14|1427601|37|CP020378|CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 1, identity: 0.973 

atagatgctccccaacataaaataccttcaaagacag	CRISPR spacer
atagatgctccccaacataaaataccttcaaaaacag	Protospacer
********************************.****

126. spacer 7.14|1427601|37|CP020378|CRISPRCasFinder,CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 1, identity: 0.973 

atagatgctccccaacataaaataccttcaaagacag	CRISPR spacer
atagatgctccccaacataaaataccttcaaaaacag	Protospacer
********************************.****

127. spacer 9.1|1648769|38|CP020378|CRISPRCasFinder matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 1, identity: 0.974 

gttttttggggtgcagttgcgagtccaaccccctcttt	CRISPR spacer
cttttttggggtgcagttgcgagtccaaccccctcttt	Protospacer
 *************************************

128. spacer 10.1|1760053|39|CP020378|PILER-CR,CRT matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 1, identity: 0.974 

tctcttacgctttttcaatcacttttttccttgctaaaa	CRISPR spacer
actcttacgctttttcaatcacttttttccttgctaaaa	Protospacer
 **************************************

129. spacer 10.1|1760053|39|CP020378|PILER-CR,CRT matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 1, identity: 0.974 

tctcttacgctttttcaatcacttttttccttgctaaaa	CRISPR spacer
actcttacgctttttcaatcacttttttccttgctaaaa	Protospacer
 **************************************

130. spacer 10.1|1760053|39|CP020378|PILER-CR,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 1, identity: 0.974 

tctcttacgctttttcaatcacttttttccttgctaaaa	CRISPR spacer
actcttacgctttttcaatcacttttttccttgctaaaa	Protospacer
 **************************************

131. spacer 10.2|1760120|38|CP020378|PILER-CR,CRT matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 1, identity: 0.974 

ttgcggtatattggaattgaacaggatgatttaaacaa	CRISPR spacer
ttgcgttatattggaattgaacaggatgatttaaacaa	Protospacer
***** ********************************

132. spacer 10.6|1760121|37|CP020378|CRISPRCasFinder matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 1, identity: 0.973 

tgcggtatattggaattgaacaggatgatttaaacaa	CRISPR spacer
tgcgttatattggaattgaacaggatgatttaaacaa	Protospacer
**** ********************************

133. spacer 11.7|1936416|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 1, identity: 0.972 

ctgagtaacaaggatttttattaaaagtattatcag	CRISPR spacer
ctgagtaacaaggatttttattaaaagtactatcag	Protospacer
*****************************.******

134. spacer 11.7|1936416|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 1, identity: 0.972 

ctgagtaacaaggatttttattaaaagtattatcag	CRISPR spacer
ctgagtaacaaggatttttattaaaagtactatcag	Protospacer
*****************************.******

135. spacer 11.8|1936481|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 1, identity: 0.972 

tatctttagaataacagtatccatcataattatttg	CRISPR spacer
tatctttagaataacagtatccattataattatttg	Protospacer
************************.***********

136. spacer 11.8|1936481|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 1, identity: 0.972 

tatctttagaataacagtatccatcataattatttg	CRISPR spacer
tatctttagaataacagtatccattataattatttg	Protospacer
************************.***********

137. spacer 11.12|1936744|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 1, identity: 0.973 

gctggtaagtttgattttatatcatggtagtaagcag	CRISPR spacer
gctggtaagtttgattttatatcatggtagtaagcac	Protospacer
************************************

138. spacer 11.12|1936744|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 1, identity: 0.973 

gctggtaagtttgattttatatcatggtagtaagcag	CRISPR spacer
gctggtaagtttgattttatatcatggtagtaagcac	Protospacer
************************************

139. spacer 13.1|2885407|36|CP020378|PILER-CR,CRT matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 1, identity: 0.972 

ctttgcttataaagtagtagacgaagctaaaaagct	CRISPR spacer
ctttgcttataaagtagtagacgaagctaaaaagtt	Protospacer
**********************************.*

140. spacer 13.4|2885408|35|CP020378|CRISPRCasFinder matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 1, identity: 0.971 

tttgcttataaagtagtagacgaagctaaaaagct	CRISPR spacer
tttgcttataaagtagtagacgaagctaaaaagtt	Protospacer
*********************************.*

141. spacer 14.14|3099324|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 1, identity: 0.972 

ttacagataaggggttgttaagtgctgatagtgtta	CRISPR spacer
ttacagacaaggggttgttaagtgctgatagtgtta	Protospacer
*******.****************************

142. spacer 14.14|3099324|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 1, identity: 0.972 

ttacagataaggggttgttaagtgctgatagtgtta	CRISPR spacer
ttacagataaggggctgttaagtgctgatagtgtta	Protospacer
**************.*********************

143. spacer 19.9|3454464|36|CP020378|CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 1, identity: 0.972 

tagttttatatcttgcaaataacttaaaaaattaag	CRISPR spacer
tagttttatgtcttgcaaataacttaaaaaattaag	Protospacer
*********.**************************

144. spacer 19.19|3455118|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 1, identity: 0.973 

aaggaaaaagaaataataaaagaatttactccgaaaa	CRISPR spacer
aaggaaaaagaaataataaaagaatttactccaaaaa	Protospacer
********************************.****

145. spacer 19.19|3455118|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 1, identity: 0.973 

aaggaaaaagaaataataaaagaatttactccgaaaa	CRISPR spacer
aaggaaaaagaaataataaaagaatttactccaaaaa	Protospacer
********************************.****

146. spacer 19.19|3455118|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 1, identity: 0.973 

aaggaaaaagaaataataaaagaatttactccgaaaa	CRISPR spacer
aaggaaaaagaaataataaaagaatttactccaaaaa	Protospacer
********************************.****

147. spacer 19.19|3455118|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 1, identity: 0.973 

aaggaaaaagaaataataaaagaatttactccgaaaa	CRISPR spacer
aaggaaaaagaaataataaaagaatttactccaaaaa	Protospacer
********************************.****

148. spacer 19.20|3455184|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 1, identity: 0.973 

aagttttgcatgtaccagcgagctaaaaatttttctc	CRISPR spacer
aagttttgcatgtaccagcgagctaaaaatttctctc	Protospacer
********************************.****

149. spacer 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 1, identity: 0.973 

agagtggtttaagaaaataagttatttttcaaaacat	CRISPR spacer
agagtggtttaagaaaataagttatttttcaaagcat	Protospacer
*********************************.***

150. spacer 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 1, identity: 0.973 

agagtggtttaagaaaataagttatttttcaaaacat	CRISPR spacer
agagtggttaaagaaaataagttatttttcaaaacat	Protospacer
********* ***************************

151. spacer 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 1, identity: 0.973 

agagtggtttaagaaaataagttatttttcaaaacat	CRISPR spacer
agagtggttaaagaaaataagttatttttcaaaacat	Protospacer
********* ***************************

152. spacer 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 1, identity: 0.973 

agagtggtttaagaaaataagttatttttcaaaacat	CRISPR spacer
agagtggtttaagaaaataagttatttttcaaagcat	Protospacer
*********************************.***

153. spacer 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 1, identity: 0.973 

agagtggtttaagaaaataagttatttttcaaaacat	CRISPR spacer
agagtggtttaagaaaataagttatttttcaaagcat	Protospacer
*********************************.***

154. spacer 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 1, identity: 0.973 

agagtggtttaagaaaataagttatttttcaaaacat	CRISPR spacer
agagtggtttaagaaaataagttatttttcaaagcat	Protospacer
*********************************.***

155. spacer 19.28|3455711|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 1, identity: 0.973 

cagtatcatccataaaaccatcaaattcagccaataa	CRISPR spacer
cagtatcatccataaaaccatcaaatttagccaataa	Protospacer
***************************.*********

156. spacer 19.35|3456174|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 1, identity: 0.973 

taacagcaataaagaacactaacaaaaaagctaaaag	CRISPR spacer
taacagcaataaagaacactaataaaaaagctaaaag	Protospacer
**********************.**************

157. spacer 19.35|3456174|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 1, identity: 0.973 

taacagcaataaagaacactaacaaaaaagctaaaag	CRISPR spacer
taacagcaataaagaacactaataaaaaagctaaaag	Protospacer
**********************.**************

158. spacer 19.35|3456174|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 1, identity: 0.973 

taacagcaataaagaacactaacaaaaaagctaaaag	CRISPR spacer
taacagcaataaagaacactaataaaaaagctaaaag	Protospacer
**********************.**************

159. spacer 19.50|3454333|36|CP020378|PILER-CR matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 1, identity: 0.972 

actgcaatggataatataaacgatcttaaaaaagac	CRISPR spacer
actgcaatggataatataaacgatcttaaaaaagat	Protospacer
***********************************.

160. spacer 21.2|3824281|35|CP020378|CRISPRCasFinder matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 1, identity: 0.971 

agtttttgataacttaaaatctagctttgcagagt	CRISPR spacer
agtttttgataacttaaaatctagttttgcagagt	Protospacer
************************.**********

161. spacer 21.2|3824281|35|CP020378|CRISPRCasFinder matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 1, identity: 0.971 

agtttttgataacttaaaatctagctttgcagagt	CRISPR spacer
agtttttgataacttaaaatctagttttgcagagt	Protospacer
************************.**********

162. spacer 21.14|3824502|39|CP020378|CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 1, identity: 0.974 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
attgttgaagtgttttgtaactctcaaaaatgaaaataa	Protospacer
 **************************************

163. spacer 21.15|3824568|38|CP020378|CRT matches to NZ_CP029156 (Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.974 

cgcagcaggattatatgaagcagatggtggagcatgga	CRISPR spacer
agcagcaggattatatgaagcagatggtggagcatgga	Protospacer
 *************************************

164. spacer 21.15|3824568|38|CP020378|CRT matches to NZ_CP029153 (Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.974 

cgcagcaggattatatgaagcagatggtggagcatgga	CRISPR spacer
agcagcaggattatatgaagcagatggtggagcatgga	Protospacer
 *************************************

165. spacer 21.15|3824568|38|CP020378|CRT matches to NZ_CP020425 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.974 

cgcagcaggattatatgaagcagatggtggagcatgga	CRISPR spacer
agcagcaggattatatgaagcagatggtggagcatgga	Protospacer
 *************************************

166. spacer 21.15|3824568|38|CP020378|CRT matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 1, identity: 0.974 

cgcagcaggattatatgaagcagatggtggagcatgga	CRISPR spacer
agcagcaggattatatgaagcagatggtggagcatgga	Protospacer
 *************************************

167. spacer 21.15|3824568|38|CP020378|CRT matches to NZ_CP011969 (Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.974 

cgcagcaggattatatgaagcagatggtggagcatgga	CRISPR spacer
agcagcaggattatatgaagcagatggtggagcatgga	Protospacer
 *************************************

168. spacer 1.1|31941|38|CP020378|CRISPRCasFinder matches to NZ_CP033215 (Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.947 

tagcaacagaataaactgaacgcatgtgaagtttgttt	CRISPR spacer
aagcaacagaataaactgaacacatgtgaagtttgttt	Protospacer
 ********************.****************

169. spacer 7.8|1427205|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 2, identity: 0.946 

acaaatatagtatatcaaaggaggaaaataatggaaa	CRISPR spacer
acaaatatagtatatcaaaggagggaaataatggcaa	Protospacer
************************.********* **

170. spacer 7.8|1427205|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 2, identity: 0.946 

acaaatatagtatatcaaaggaggaaaataatggaaa	CRISPR spacer
acaaatatagtatatcaaaggagggaaataatggcaa	Protospacer
************************.********* **

171. spacer 7.14|1427601|37|CP020378|CRISPRCasFinder,CRT matches to CP011970 (Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence) position: , mismatch: 2, identity: 0.946 

atagatgctccccaacataaaataccttcaaagacag	CRISPR spacer
atagatgccccccaacataaaataccttcaaaaacag	Protospacer
********.***********************.****

172. spacer 7.14|1427601|37|CP020378|CRISPRCasFinder,CRT matches to LN681537 (Clostridium phage phiCD211, complete genome) position: , mismatch: 2, identity: 0.946 

atagatgctccccaacataaaataccttcaaagacag	CRISPR spacer
atagatgccccccaacataaaataccttcaaaaacag	Protospacer
********.***********************.****

173. spacer 7.14|1427601|37|CP020378|CRISPRCasFinder,CRT matches to NZ_CP020426 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.946 

atagatgctccccaacataaaataccttcaaagacag	CRISPR spacer
atagatgccccccaacataaaataccttcaaaaacag	Protospacer
********.***********************.****

174. spacer 7.16|1427613|36|CP020378|PILER-CR matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.944 

gatagatgctccccaacataaaataccttcaaagac	CRISPR spacer
tatagatgctccccaacataaaataccttcaaaaac	Protospacer
 ********************************.**

175. spacer 7.16|1427613|36|CP020378|PILER-CR matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 2, identity: 0.944 

gatagatgctccccaacataaaataccttcaaagac	CRISPR spacer
tatagatgctccccaacataaaataccttcaaaaac	Protospacer
 ********************************.**

176. spacer 7.16|1427613|36|CP020378|PILER-CR matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 2, identity: 0.944 

gatagatgctccccaacataaaataccttcaaagac	CRISPR spacer
tatagatgctccccaacataaaataccttcaaaaac	Protospacer
 ********************************.**

177. spacer 11.15|1936941|35|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 2, identity: 0.943 

ctattaactttaggtattttgtaagatttttcctc	CRISPR spacer
ctattaactctaggtattttgtaagacttttcctc	Protospacer
*********.****************.********

178. spacer 13.2|2885472|37|CP020378|PILER-CR,CRT matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 2, identity: 0.946 

agtaactgaaacaaatagagaaaaggcagtttacaga	CRISPR spacer
agtaactgaaacaaatagagaaaaagcagtttataga	Protospacer
************************.********.***

179. spacer 13.3|2885538|38|CP020378|PILER-CR,CRT matches to NZ_CP020425 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.947 

atgttatttacctaaaaagatgtaaatttgcttaaaaa	CRISPR spacer
atgttatttacctaaaaagatacaaatttgcttaaaaa	Protospacer
*********************..***************

180. spacer 13.3|2885538|38|CP020378|PILER-CR,CRT matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 2, identity: 0.947 

atgttatttacctaaaaagatgtaaatttgcttaaaaa	CRISPR spacer
atgttatttacctaaaaagatacaaatttgcttaaaaa	Protospacer
*********************..***************

181. spacer 13.3|2885538|38|CP020378|PILER-CR,CRT matches to NZ_CP011969 (Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.947 

atgttatttacctaaaaagatgtaaatttgcttaaaaa	CRISPR spacer
atgttatttacctaaaaagatacaaatttgcttaaaaa	Protospacer
*********************..***************

182. spacer 13.5|2885473|36|CP020378|CRISPRCasFinder matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 2, identity: 0.944 

gtaactgaaacaaatagagaaaaggcagtttacaga	CRISPR spacer
gtaactgaaacaaatagagaaaaagcagtttataga	Protospacer
***********************.********.***

183. spacer 13.6|2885539|37|CP020378|CRISPRCasFinder matches to NZ_CP020425 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.946 

tgttatttacctaaaaagatgtaaatttgcttaaaaa	CRISPR spacer
tgttatttacctaaaaagatacaaatttgcttaaaaa	Protospacer
********************..***************

184. spacer 13.6|2885539|37|CP020378|CRISPRCasFinder matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 2, identity: 0.946 

tgttatttacctaaaaagatgtaaatttgcttaaaaa	CRISPR spacer
tgttatttacctaaaaagatacaaatttgcttaaaaa	Protospacer
********************..***************

185. spacer 13.6|2885539|37|CP020378|CRISPRCasFinder matches to NZ_CP011969 (Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.946 

tgttatttacctaaaaagatgtaaatttgcttaaaaa	CRISPR spacer
tgttatttacctaaaaagatacaaatttgcttaaaaa	Protospacer
********************..***************

186. spacer 14.11|3099128|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020425 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.944 

aaatgaattagaaaaaatagatagattaatagatgt	CRISPR spacer
aaatgaattagaaaaaatagatagattagtagatat	Protospacer
****************************.*****.*

187. spacer 14.11|3099128|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 2, identity: 0.944 

aaatgaattagaaaaaatagatagattaatagatgt	CRISPR spacer
aaatgaattagaaaaaatagatagattagtagatat	Protospacer
****************************.*****.*

188. spacer 14.11|3099128|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011969 (Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.944 

aaatgaattagaaaaaatagatagattaatagatgt	CRISPR spacer
aaatgaattagaaaaaatagatagattagtagatat	Protospacer
****************************.*****.*

189. spacer 19.9|3454464|36|CP020378|CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 2, identity: 0.944 

tagttttatatcttgcaaataacttaaaaaattaag	CRISPR spacer
tagttttatgtcttgcaaataacttaaaaaatttag	Protospacer
*********.*********************** **

190. spacer 19.9|3454464|36|CP020378|CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 2, identity: 0.944 

tagttttatatcttgcaaataacttaaaaaattaag	CRISPR spacer
tagttttatgtcttgcaaataacttaaaaaatttag	Protospacer
*********.*********************** **

191. spacer 19.9|3454464|36|CP020378|CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 2, identity: 0.944 

tagttttatatcttgcaaataacttaaaaaattaag	CRISPR spacer
tagttttatgtcttgcaaataacttaaaaaatttag	Protospacer
*********.*********************** **

192. spacer 19.9|3454464|36|CP020378|CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 2, identity: 0.944 

tagttttatatcttgcaaataacttaaaaaattaag	CRISPR spacer
tagttttatgtcttgcaaataacttaaaaaatttag	Protospacer
*********.*********************** **

193. spacer 19.10|3454529|33|CP020378|CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 2, identity: 0.939 

gcgaaagaactgttatatataaaaataactaaa	CRISPR spacer
gcgaaagaactgttgtatataaaaataattaaa	Protospacer
**************.*************.****

194. spacer 19.10|3454529|33|CP020378|CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 2, identity: 0.939 

gcgaaagaactgttatatataaaaataactaaa	CRISPR spacer
gcgaaagaactgttatgtataaaaacaactaaa	Protospacer
****************.********.*******

195. spacer 19.10|3454529|33|CP020378|CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 2, identity: 0.939 

gcgaaagaactgttatatataaaaataactaaa	CRISPR spacer
gcgaaagaactgttatgtataaaaacaactaaa	Protospacer
****************.********.*******

196. spacer 19.10|3454529|33|CP020378|CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 2, identity: 0.939 

gcgaaagaactgttatatataaaaataactaaa	CRISPR spacer
gcgaaagaactgttatgtataaaaacaactaaa	Protospacer
****************.********.*******

197. spacer 19.10|3454529|33|CP020378|CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 2, identity: 0.939 

gcgaaagaactgttatatataaaaataactaaa	CRISPR spacer
gcgaaagaactgttatgtataaaaacaactaaa	Protospacer
****************.********.*******

198. spacer 19.10|3454529|33|CP020378|CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 2, identity: 0.939 

gcgaaagaactgttatatataaaaataactaaa	CRISPR spacer
gcgaaagaactgttatgtataaaaacaactaaa	Protospacer
****************.********.*******

199. spacer 19.11|3454591|38|CP020378|CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 2, identity: 0.947 

aaaaatgtagaaagtgaccttatagccaatgtaagacc	CRISPR spacer
aaaaatgtagaaagtgaccttatagctagtgtaagacc	Protospacer
**************************.*.*********

200. spacer 19.11|3454591|38|CP020378|CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 2, identity: 0.947 

aaaaatgtagaaagtgaccttatagccaatgtaagacc	CRISPR spacer
aaaaatgtagaaagtgaccttatagctagtgtaagacc	Protospacer
**************************.*.*********

201. spacer 19.11|3454591|38|CP020378|CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 2, identity: 0.947 

aaaaatgtagaaagtgaccttatagccaatgtaagacc	CRISPR spacer
aaaaatgtagaaagtgaccttatagctagtgtaagacc	Protospacer
**************************.*.*********

202. spacer 19.11|3454591|38|CP020378|CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 2, identity: 0.947 

aaaaatgtagaaagtgaccttatagccaatgtaagacc	CRISPR spacer
aaaaatgtagaaagtgaccttatagctagtgtaagacc	Protospacer
**************************.*.*********

203. spacer 19.11|3454591|38|CP020378|CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 2, identity: 0.947 

aaaaatgtagaaagtgaccttatagccaatgtaagacc	CRISPR spacer
aaaaatgtagaaagtgaccttatagctagtgtaagacc	Protospacer
**************************.*.*********

204. spacer 19.12|3454658|37|CP020378|CRISPRCasFinder,CRT matches to LN681542 (Clostridium phage phiMMP03, complete genome) position: , mismatch: 2, identity: 0.946 

ttatcacatatttaaactcgccttttctattaatata	CRISPR spacer
ttattacatatttaaactcaccttttctattaatata	Protospacer
****.**************.*****************

205. spacer 19.12|3454658|37|CP020378|CRISPRCasFinder,CRT matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 2, identity: 0.946 

ttatcacatatttaaactcgccttttctattaatata	CRISPR spacer
ttattacatatttaaactcaccttttctattaatata	Protospacer
****.**************.*****************

206. spacer 19.12|3454658|37|CP020378|CRISPRCasFinder,CRT matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 2, identity: 0.946 

ttatcacatatttaaactcgccttttctattaatata	CRISPR spacer
ttattacatatttaaactcaccttttctattaatata	Protospacer
****.**************.*****************

207. spacer 19.12|3454658|37|CP020378|CRISPRCasFinder,CRT matches to LN681541 (Clostridium phage phiMMP01, complete genome) position: , mismatch: 2, identity: 0.946 

ttatcacatatttaaactcgccttttctattaatata	CRISPR spacer
ttattacatatttaaactcaccttttctattaatata	Protospacer
****.**************.*****************

208. spacer 19.12|3454658|37|CP020378|CRISPRCasFinder,CRT matches to AY522340 (Clostridium difficile phage phiC2 isolate RW11 portal protein and hypothetical protein genes, complete cds) position: , mismatch: 2, identity: 0.946 

ttatcacatatttaaactcgccttttctattaatata	CRISPR spacer
ttattacatatttaaactcaccttttctattaatata	Protospacer
****.**************.*****************

209. spacer 19.24|3455448|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN681534 (Clostridium phage phiCD24-1, complete genome) position: , mismatch: 2, identity: 0.946 

taattacattattttctaaaatcgctcttataactgc	CRISPR spacer
taattacattattttctaaaatcgcttttataacagc	Protospacer
**************************.******* **

210. spacer 19.24|3455448|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to MN718463 (Clostridium phage phiCDKH01, complete genome) position: , mismatch: 2, identity: 0.946 

taattacattattttctaaaatcgctcttataactgc	CRISPR spacer
taattacattattttctaaaatcgcttttataacagc	Protospacer
**************************.******* **

211. spacer 19.33|3456042|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 2, identity: 0.944 

agacacacctcgcacagatgcagaaagttccaattg	CRISPR spacer
agacacacctcgcacagatgcagaaagctctaattg	Protospacer
***************************.**.*****

212. spacer 19.35|3456174|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 2, identity: 0.946 

taacagcaataaagaacactaacaaaaaagctaaaag	CRISPR spacer
taacagcaataaagaacactaataaaaaaactaaaag	Protospacer
**********************.******.*******

213. spacer 19.52|3454464|37|CP020378|PILER-CR matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 2, identity: 0.946 

tagttttatatcttgcaaataacttaaaaaattaagc	CRISPR spacer
tagttttatgtcttgcaaataacttaaaaaattaagt	Protospacer
*********.**************************.

214. spacer 19.53|3454529|34|CP020378|PILER-CR matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 2, identity: 0.941 

gcgaaagaactgttatatataaaaataactaaaa	CRISPR spacer
gcgaaagaactgttgtatataaaaataattaaaa	Protospacer
**************.*************.*****

215. spacer 19.53|3454529|34|CP020378|PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 2, identity: 0.941 

gcgaaagaactgttatatataaaaataactaaaa	CRISPR spacer
gcgaaagaactgttatgtataaaaacaactaaaa	Protospacer
****************.********.********

216. spacer 19.53|3454529|34|CP020378|PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 2, identity: 0.941 

gcgaaagaactgttatatataaaaataactaaaa	CRISPR spacer
gcgaaagaactgttatgtataaaaacaactaaaa	Protospacer
****************.********.********

217. spacer 19.53|3454529|34|CP020378|PILER-CR matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 2, identity: 0.941 

gcgaaagaactgttatatataaaaataactaaaa	CRISPR spacer
gcgaaagaactgttatgtataaaaacaactaaaa	Protospacer
****************.********.********

218. spacer 19.53|3454529|34|CP020378|PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 2, identity: 0.941 

gcgaaagaactgttatatataaaaataactaaaa	CRISPR spacer
gcgaaagaactgttatgtataaaaacaactaaaa	Protospacer
****************.********.********

219. spacer 19.53|3454529|34|CP020378|PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 2, identity: 0.941 

gcgaaagaactgttatatataaaaataactaaaa	CRISPR spacer
gcgaaagaactgttatgtataaaaacaactaaaa	Protospacer
****************.********.********

220. spacer 21.2|3824281|35|CP020378|CRISPRCasFinder matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 2, identity: 0.943 

agtttttgataacttaaaatctagctttgcagagt	CRISPR spacer
agtttttgataacttaaaatctagctttgcagaac	Protospacer
*********************************..

221. spacer 21.2|3824281|35|CP020378|CRISPRCasFinder matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 2, identity: 0.943 

agtttttgataacttaaaatctagctttgcagagt	CRISPR spacer
agtttttgataacttaaaatctagctttgcagaac	Protospacer
*********************************..

222. spacer 21.14|3824502|39|CP020378|CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 2, identity: 0.949 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
attgttgaagtgttttgtgactctcaaaaatgaaaataa	Protospacer
 *****************.********************

223. spacer 21.14|3824502|39|CP020378|CRT matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 2, identity: 0.949 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
atttttgaagtgttttgtaactctcaaaaatgaaaataa	Protospacer
 ** ***********************************

224. spacer 21.14|3824502|39|CP020378|CRT matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 2, identity: 0.949 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
atttttgaagtgttttgtaactctcaaaaatgaaaataa	Protospacer
 ** ***********************************

225. spacer 21.14|3824502|39|CP020378|CRT matches to LN681542 (Clostridium phage phiMMP03, complete genome) position: , mismatch: 2, identity: 0.949 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
atttttgaagtgttttgtaactctcaaaaatgaaaataa	Protospacer
 ** ***********************************

226. spacer 21.14|3824502|39|CP020378|CRT matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 2, identity: 0.949 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
atttttgaagtgttttgtaactctcaaaaatgaaaataa	Protospacer
 ** ***********************************

227. spacer 21.14|3824502|39|CP020378|CRT matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 2, identity: 0.949 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
attgttgaagtgttttgtgactctcaaaaatgaaaataa	Protospacer
 *****************.********************

228. spacer 21.14|3824502|39|CP020378|CRT matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 2, identity: 0.949 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
atttttgaagtgttttgtaactctcaaaaatgaaaataa	Protospacer
 ** ***********************************

229. spacer 21.14|3824502|39|CP020378|CRT matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 2, identity: 0.949 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
attgttgaagtgttttgtgactctcaaaaatgaaaataa	Protospacer
 *****************.********************

230. spacer 21.14|3824502|39|CP020378|CRT matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 2, identity: 0.949 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
atttttgaagtgttttgtaactctcaaaaatgaaaataa	Protospacer
 ** ***********************************

231. spacer 21.19|3824281|37|CP020378|PILER-CR matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 2, identity: 0.946 

agtttttgataacttaaaatctagctttgcagagttc	CRISPR spacer
agtttttgataacttaaaatctagttttgcagagtta	Protospacer
************************.***********

232. spacer 21.19|3824281|37|CP020378|PILER-CR matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 2, identity: 0.946 

agtttttgataacttaaaatctagctttgcagagttc	CRISPR spacer
agtttttgataacttaaaatctagttttgcagagtta	Protospacer
************************.***********

233. spacer 7.1|1426740|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to KX905163 (Clostridioides phage phiSemix9P1, complete genome) position: , mismatch: 3, identity: 0.917 

tgtaaatgatgatgttaaaaacataatagttgatga	CRISPR spacer
tataaatgaagatattaaaaacataatagttgatga	Protospacer
*.******* ***.**********************

234. spacer 7.15|1427547|24|CP020378|PILER-CR matches to MN694672 (Marine virus AFVG_250M611, complete genome) position: , mismatch: 3, identity: 0.875 

gttgttgaagtcgtcgaattagaa	CRISPR spacer
attgtagaagtcgttgaattagaa	Protospacer
.**** ********.*********

235. spacer 7.16|1427613|36|CP020378|PILER-CR matches to NZ_CP020426 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.917 

gatagatgctccccaacataaaataccttcaaagac	CRISPR spacer
tatagatgccccccaacataaaataccttcaaaaac	Protospacer
 ********.***********************.**

236. spacer 7.16|1427613|36|CP020378|PILER-CR matches to CP011970 (Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence) position: , mismatch: 3, identity: 0.917 

gatagatgctccccaacataaaataccttcaaagac	CRISPR spacer
tatagatgccccccaacataaaataccttcaaaaac	Protospacer
 ********.***********************.**

237. spacer 7.16|1427613|36|CP020378|PILER-CR matches to LN681537 (Clostridium phage phiCD211, complete genome) position: , mismatch: 3, identity: 0.917 

gatagatgctccccaacataaaataccttcaaagac	CRISPR spacer
tatagatgccccccaacataaaataccttcaaaaac	Protospacer
 ********.***********************.**

238. spacer 11.7|1936416|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.917 

ctgagtaacaaggatttttattaaaagtattatcag	CRISPR spacer
cactgtaacaaggatttttattaaaagtattatcag	Protospacer
*   ********************************

239. spacer 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 3, identity: 0.917 

ttaaatccaaattgtttacctgcaacagaaatgtct	CRISPR spacer
ctgaatccaaattgtttccctgcaacagaaatgtct	Protospacer
.*.************** ******************

240. spacer 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 3, identity: 0.917 

ttaaatccaaattgtttacctgcaacagaaatgtct	CRISPR spacer
ctgaatccaaattgtttccctgcaacagaaatgtct	Protospacer
.*.************** ******************

241. spacer 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 3, identity: 0.917 

ttaaatccaaattgtttacctgcaacagaaatgtct	CRISPR spacer
ctgaatccaaattgtttccctgcaacagaaatgtct	Protospacer
.*.************** ******************

242. spacer 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 3, identity: 0.917 

ttaaatccaaattgtttacctgcaacagaaatgtct	CRISPR spacer
ctgaatccaaattgtttccctgcaacagaaatgtct	Protospacer
.*.************** ******************

243. spacer 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to LN681542 (Clostridium phage phiMMP03, complete genome) position: , mismatch: 3, identity: 0.917 

ttaaatccaaattgtttacctgcaacagaaatgtct	CRISPR spacer
ctgaatccaaattgtttccctgcaacagaaatgtct	Protospacer
.*.************** ******************

244. spacer 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 3, identity: 0.917 

ttaaatccaaattgtttacctgcaacagaaatgtct	CRISPR spacer
ctgaatccaaattgtttccctgcaacagaaatgtct	Protospacer
.*.************** ******************

245. spacer 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 3, identity: 0.917 

ttaaatccaaattgtttacctgcaacagaaatgtct	CRISPR spacer
ctgaatccaaattgtttccctgcaacagaaatgtct	Protospacer
.*.************** ******************

246. spacer 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 3, identity: 0.917 

ttaaatccaaattgtttacctgcaacagaaatgtct	CRISPR spacer
ctgaatccaaattgtttccctgcaacagaaatgtct	Protospacer
.*.************** ******************

247. spacer 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 3, identity: 0.917 

ttaaatccaaattgtttacctgcaacagaaatgtct	CRISPR spacer
ctgaatccaaattgtttccctgcaacagaaatgtct	Protospacer
.*.************** ******************

248. spacer 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 3, identity: 0.917 

ttaaatccaaattgtttacctgcaacagaaatgtct	CRISPR spacer
ctgaatccaaattgtttccctgcaacagaaatgtct	Protospacer
.*.************** ******************

249. spacer 11.13|1936810|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 3, identity: 0.917 

ttaaatccaaattgtttacctgcaacagaaatgtct	CRISPR spacer
ctgaatccaaattgtttccctgcaacagaaatgtct	Protospacer
.*.************** ******************

250. spacer 13.6|2885539|37|CP020378|CRISPRCasFinder matches to NZ_CP029156 (Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.919 

tgttatttacctaaaaagatgtaaatttgcttaaaaa	CRISPR spacer
tattatttacctaaaaagatacaaatttgcttaaaaa	Protospacer
*.******************..***************

251. spacer 13.6|2885539|37|CP020378|CRISPRCasFinder matches to NZ_CP029153 (Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.919 

tgttatttacctaaaaagatgtaaatttgcttaaaaa	CRISPR spacer
tattatttacctaaaaagatacaaatttgcttaaaaa	Protospacer
*.******************..***************

252. spacer 14.3|3098603|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 3, identity: 0.919 

caaaagcagctattgcaaatactatatcacttaatac	CRISPR spacer
caaaagcagctattgcaaatcctatatcgcttaatat	Protospacer
******************** *******.*******.

253. spacer 14.3|3098603|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 3, identity: 0.919 

caaaagcagctattgcaaatactatatcacttaatac	CRISPR spacer
caaaagcagctattgcaaatcctatatcgcttaatat	Protospacer
******************** *******.*******.

254. spacer 19.52|3454464|37|CP020378|PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 3, identity: 0.919 

tagttttatatcttgcaaataacttaaaaaattaagc	CRISPR spacer
tagttttatgtcttgcaaataacttaaaaaatttagt	Protospacer
*********.*********************** **.

255. spacer 19.52|3454464|37|CP020378|PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 3, identity: 0.919 

tagttttatatcttgcaaataacttaaaaaattaagc	CRISPR spacer
tagttttatgtcttgcaaataacttaaaaaatttagt	Protospacer
*********.*********************** **.

256. spacer 19.52|3454464|37|CP020378|PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 3, identity: 0.919 

tagttttatatcttgcaaataacttaaaaaattaagc	CRISPR spacer
tagttttatgtcttgcaaataacttaaaaaatttagt	Protospacer
*********.*********************** **.

257. spacer 19.52|3454464|37|CP020378|PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 3, identity: 0.919 

tagttttatatcttgcaaataacttaaaaaattaagc	CRISPR spacer
tagttttatgtcttgcaaataacttaaaaaatttagt	Protospacer
*********.*********************** **.

258. spacer 19.54|3454591|39|CP020378|PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 3, identity: 0.923 

aaaaatgtagaaagtgaccttatagccaatgtaagacca	CRISPR spacer
aaaaatgtagaaagtgaccttatagctagtgtaagacct	Protospacer
**************************.*.*********

259. spacer 19.54|3454591|39|CP020378|PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 3, identity: 0.923 

aaaaatgtagaaagtgaccttatagccaatgtaagacca	CRISPR spacer
aaaaatgtagaaagtgaccttatagctagtgtaagacct	Protospacer
**************************.*.*********

260. spacer 19.54|3454591|39|CP020378|PILER-CR matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 3, identity: 0.923 

aaaaatgtagaaagtgaccttatagccaatgtaagacca	CRISPR spacer
aaaaatgtagaaagtgaccttatagctagtgtaagacct	Protospacer
**************************.*.*********

261. spacer 19.54|3454591|39|CP020378|PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 3, identity: 0.923 

aaaaatgtagaaagtgaccttatagccaatgtaagacca	CRISPR spacer
aaaaatgtagaaagtgaccttatagctagtgtaagacct	Protospacer
**************************.*.*********

262. spacer 19.54|3454591|39|CP020378|PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 3, identity: 0.923 

aaaaatgtagaaagtgaccttatagccaatgtaagacca	CRISPR spacer
aaaaatgtagaaagtgaccttatagctagtgtaagacct	Protospacer
**************************.*.*********

263. spacer 21.11|3824280|38|CP020378|CRT matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 3, identity: 0.921 

tagtttttgataacttaaaatctagctttgcagagttc	CRISPR spacer
cagtttttgataacttaaaatctagttttgcagagtta	Protospacer
.************************.***********

264. spacer 21.11|3824280|38|CP020378|CRT matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 3, identity: 0.921 

tagtttttgataacttaaaatctagctttgcagagttc	CRISPR spacer
cagtttttgataacttaaaatctagttttgcagagtta	Protospacer
.************************.***********

265. spacer 21.14|3824502|39|CP020378|CRT matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 3, identity: 0.923 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
attgttgaagtgttttgtaactctcaaaaactaaaataa	Protospacer
 *****************************. *******

266. spacer 21.19|3824281|37|CP020378|PILER-CR matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 3, identity: 0.919 

agtttttgataacttaaaatctagctttgcagagttc	CRISPR spacer
agtttttgataacttaaaatctagctttgcagaacta	Protospacer
*********************************..*

267. spacer 21.19|3824281|37|CP020378|PILER-CR matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 3, identity: 0.919 

agtttttgataacttaaaatctagctttgcagagttc	CRISPR spacer
agtttttgataacttaaaatctagctttgcagaacta	Protospacer
*********************************..*

268. spacer 14.12|3099193|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 4, identity: 0.889 

ccttatagatgttataatttaattataaattacatg	CRISPR spacer
ccttatagatgctataatttaattataaatcatgtg	Protospacer
***********.******************.*..**

269. spacer 21.11|3824280|38|CP020378|CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 4, identity: 0.895 

tagtttttgataacttaaaatctagctttgcagagttc	CRISPR spacer
cagtttttgataacttaaaatctagctttgcagaacta	Protospacer
.*********************************..*

270. spacer 21.11|3824280|38|CP020378|CRT matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 4, identity: 0.895 

tagtttttgataacttaaaatctagctttgcagagttc	CRISPR spacer
cagtttttgataacttaaaatctagctttgcagaacta	Protospacer
.*********************************..*

271. spacer 21.14|3824502|39|CP020378|CRT matches to HG531805 (Clostridium phage CDMH1 complete genome) position: , mismatch: 4, identity: 0.897 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
attgttgaagtgttttgtgactctcaaaaatgaaataaa	Protospacer
 *****************.****************  **

272. spacer 19.22|3455316|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 5, identity: 0.865 

gaaaaggctaagaatgaatgactttttctataaaaga-----	CRISPR spacer
gaaaaggctaagaatgaatgacttttt-----aaagaaggtt	Protospacer
***************************     *****

273. spacer 19.22|3455316|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 5, identity: 0.865 

gaaaaggctaagaatgaatgactttttctataaaaga-----	CRISPR spacer
gaaaaggctaagaatgaatgacttttt-----aaagaaggtt	Protospacer
***************************     *****

274. spacer 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 5, identity: 0.865 

agagtggtttaagaaaataagttatttttcaaaacat	CRISPR spacer
agagtggtttaagaaaataagttatttttaatctgat	Protospacer
***************************** *    **

275. spacer 19.29|3455777|38|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 5, identity: 0.868 

ccattatacattgtttcaagcttcttttgtacttcttt	CRISPR spacer
cctgcatacattgtttcaagtttcttttgtacttcctt	Protospacer
**  .***************.**************.**

276. spacer 19.29|3455777|38|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 5, identity: 0.868 

ccattatacattgtttcaagcttcttttgtacttcttt	CRISPR spacer
cctgcatacattgtttcaagtttcttttgtacttcctt	Protospacer
**  .***************.**************.**

277. spacer 19.29|3455777|38|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 5, identity: 0.868 

ccattatacattgtttcaagcttcttttgtacttcttt	CRISPR spacer
cctgcatacattgtttcaagtttcttttgtacttcctt	Protospacer
**  .***************.**************.**

278. spacer 19.29|3455777|38|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 5, identity: 0.868 

ccattatacattgtttcaagcttcttttgtacttcttt	CRISPR spacer
cctgcatacattgtttcaagtttcttttgtacttcctt	Protospacer
**  .***************.**************.**

279. spacer 19.29|3455777|38|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 5, identity: 0.868 

ccattatacattgtttcaagcttcttttgtacttcttt	CRISPR spacer
cctgcatacattgtttcaagtttcttttgtacttcctt	Protospacer
**  .***************.**************.**

280. spacer 19.29|3455777|38|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 5, identity: 0.868 

ccattatacattgtttcaagcttcttttgtacttcttt	CRISPR spacer
cctgcatacattgtttcaagtttcttttgtacttcctt	Protospacer
**  .***************.**************.**

281. spacer 21.14|3824502|39|CP020378|CRT matches to LN681542 (Clostridium phage phiMMP03, complete genome) position: , mismatch: 5, identity: 0.872 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
atcattgagatgttttgtaactctcaaaaatgaaaataa	Protospacer
 *..****..*****************************

282. spacer 21.14|3824502|39|CP020378|CRT matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 5, identity: 0.872 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
atcattgagatgttttgtaactctcaaaaatgaaaataa	Protospacer
 *..****..*****************************

283. spacer 21.14|3824502|39|CP020378|CRT matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 5, identity: 0.872 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
atcattgagatgttttgtaactctcaaaaatgaaaataa	Protospacer
 *..****..*****************************

284. spacer 21.14|3824502|39|CP020378|CRT matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 5, identity: 0.872 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
atcattgagatgttttgtaactctcaaaaatgaaaataa	Protospacer
 *..****..*****************************

285. spacer 21.14|3824502|39|CP020378|CRT matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 5, identity: 0.872 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
atcattgagatgttttgtaactctcaaaaatgaaaataa	Protospacer
 *..****..*****************************

286. spacer 4.1|144242|29|CP020378|CRISPRCasFinder matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 6, identity: 0.793 

tgtaataagttaaagcaatatgaatcaac	CRISPR spacer
tacgataagttacagcaatacgaatcatc	Protospacer
*...******** *******.****** *

287. spacer 21.14|3824502|39|CP020378|CRT matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 7, identity: 0.821 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
tatcattagatgttttgtaactctcaaaaatgaaaataa	Protospacer
. *  * *..*****************************

288. spacer 21.14|3824502|39|CP020378|CRT matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 7, identity: 0.821 

cttgttgaagtgttttgtaactctcaaaaatgaaaataa	CRISPR spacer
tatcattagatgttttgtaactctcaaaaatgaaaataa	Protospacer
. *  * *..*****************************

289. spacer 7.5|1427003|38|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 8, identity: 0.789 

aattctatttaaatagtttatattttttattatatcaa	CRISPR spacer
aattatatttaaatagtttatatttattttctgataga	Protospacer
**** ******************** ** *.  ** .*

290. spacer 7.5|1427003|38|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 8, identity: 0.789 

aattctatttaaatagtttatattttttattatatcaa	CRISPR spacer
aattatatttaaatagtttatatttattttctgataga	Protospacer
**** ******************** ** *.  ** .*

291. spacer 7.5|1427003|38|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 8, identity: 0.789 

aattctatttaaatagtttatattttttattatatcaa	CRISPR spacer
aattatatttaaatagtttatatttattttctgataga	Protospacer
**** ******************** ** *.  ** .*

292. spacer 7.5|1427003|38|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 8, identity: 0.789 

aattctatttaaatagtttatattttttattatatcaa	CRISPR spacer
aattatatttaaatagtttatatttattttctgataga	Protospacer
**** ******************** ** *.  ** .*

293. spacer 7.5|1427003|38|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 8, identity: 0.789 

aattctatttaaatagtttatattttttattatatcaa	CRISPR spacer
aattatatttaaatagtttatatttattttctgataga	Protospacer
**** ******************** ** *.  ** .*

294. spacer 10.7|1760187|36|CP020378|CRISPRCasFinder matches to MK448930 (Streptococcus phage Javan406, complete genome) position: , mismatch: 8, identity: 0.778 

gatgtaaccgcacagatattctggctaaagaatcgt	CRISPR spacer
aacacaaccgcacagatattctggttgaagaatagg	Protospacer
.*...*******************.*.****** *

295. spacer 10.3|1760186|37|CP020378|PILER-CR,CRT matches to MK448930 (Streptococcus phage Javan406, complete genome) position: , mismatch: 9, identity: 0.757 

tgatgtaaccgcacagatattctggctaaagaatcgt	CRISPR spacer
aaacacaaccgcacagatattctggttgaagaatagg	Protospacer
 .*...*******************.*.****** *

296. spacer 11.17|1937071|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020425 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.757 

gctgtatttataattttttatatttgagtaaattagc	CRISPR spacer
actgtatttatagtttttaatatttgaatttatcaaa	Protospacer
.***********.***** ********.*  **.*.

297. spacer 11.17|1937071|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 9, identity: 0.757 

gctgtatttataattttttatatttgagtaaattagc	CRISPR spacer
actgtatttatagtttttaatatttgaatttatcaaa	Protospacer
.***********.***** ********.*  **.*.

298. spacer 11.17|1937071|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011969 (Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.757 

gctgtatttataattttttatatttgagtaaattagc	CRISPR spacer
actgtatttatagtttttaatatttgaatttatcaaa	Protospacer
.***********.***** ********.*  **.*.

299. spacer 11.18|1937137|36|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NC_015390 (Carnobacterium sp. 17-4 plasmid pCAR50, complete sequence) position: , mismatch: 9, identity: 0.75 

tttataccaacaattttcttctccatacttttccat	CRISPR spacer
tatataccgataattttcttctccatacataaaatt	Protospacer
* ******.*.***************** *     *

300. spacer 19.4|3454132|37|CP020378|CRISPRCasFinder,CRT matches to JN371769 (Synechococcus phage metaG-MbCM1, complete genome) position: , mismatch: 9, identity: 0.757 

tagcaacagcaagagtagtaacaacattaacaatttc	CRISPR spacer
tagcagcagaaagagtagtaacaacagttccatctct	Protospacer
*****.*** **************** *  ** .*..

301. spacer 19.10|3454529|33|CP020378|CRISPRCasFinder,CRT matches to NZ_CP046302 (Staphylococcus hominis strain FDAARGOS_747 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.727 

gcgaaagaa------ctgttatatataaaaataactaaa	CRISPR spacer
------taattcctcctattatatttaaaaataactaaa	Protospacer
       **      **.****** **************

302. spacer 19.10|3454529|33|CP020378|CRISPRCasFinder,CRT matches to MT074146 (Bacteroides phage SJC03, complete genome) position: , mismatch: 9, identity: 0.727 

gcgaaagaactgttatatataaaaataactaaa	CRISPR spacer
tccaaagagctgttatatataataatactagta	Protospacer
 * *****.************* **** . . *

303. spacer 19.19|3455118|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to MN693953 (Marine virus AFVG_250M577, complete genome) position: , mismatch: 9, identity: 0.757 

aaggaaaaagaaataataaaagaatttactccgaaaa	CRISPR spacer
aaggaaaaagaaattataaaaaaattgttacgataaa	Protospacer
************** ******.****  . * . ***

304. spacer 19.39|3456438|36|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 9, identity: 0.75 

attttcaactcatcatctccaatatcatctttactt	CRISPR spacer
tctaagaatccatcatcttcaatatcatctttattt	Protospacer
 .*   **..********.**************.**

305. spacer 19.53|3454529|34|CP020378|PILER-CR matches to NZ_CP020004 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735 

gcgaaagaactgttatatataaaaataactaaaa	CRISPR spacer
tgaataggtgtgttatatacaaaaataacaaaaa	Protospacer
  .* **.  *********.********* ****

306. spacer 19.53|3454529|34|CP020378|PILER-CR matches to NC_048762 (Bacillus phage vB_BtS_B83, complete genome) position: , mismatch: 9, identity: 0.735 

gcgaaagaactgttatatataaaaataactaaaa	CRISPR spacer
tgaataggtgtgttatatacaaaaataacaaaaa	Protospacer
  .* **.  *********.********* ****

307. spacer 19.53|3454529|34|CP020378|PILER-CR matches to MT074146 (Bacteroides phage SJC03, complete genome) position: , mismatch: 9, identity: 0.735 

gcgaaagaactgttatatataaaaataactaaaa	CRISPR spacer
tccaaagagctgttatatataataatactagtaa	Protospacer
 * *****.************* **** . . **

308. spacer 20.1|3737461|38|CP020378|CRISPRCasFinder matches to NZ_CP013716 (Staphylococcus equorum strain C2014 plasmid pC2014-2, complete sequence) position: , mismatch: 9, identity: 0.763 

gtttattatacttctttagattaattttctatatttct	CRISPR spacer
gtaacattttgttcattagatttattttctatatttct	Protospacer
**    * *  *** ******* ***************

309. spacer 11.17|1937071|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to MT932329 (Campylobacter phage F379, complete genome) position: , mismatch: 10, identity: 0.73 

gctgtatttataattttttatatttgagtaaattagc	CRISPR spacer
tgtataaaaataattttttatatttaattaaattata	Protospacer
  *.**   ****************.* *******

310. spacer 11.17|1937071|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to MT446421 (UNVERIFIED: Escherichia virus TH55, complete genome) position: , mismatch: 10, identity: 0.73 

gctgtatttataattttttatatttgagtaaattagc	CRISPR spacer
actgtatttataatcttttaaatttgaaacaatacat	Protospacer
.*************.***** ******.  ***  ..

311. spacer 11.17|1937071|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to MT533174 (Escherichia phage CJ20, complete genome) position: , mismatch: 10, identity: 0.73 

gctgtatttataattttttatatttgagtaaattagc	CRISPR spacer
actgtatttataatcttttaaatttgaaacaatacat	Protospacer
.*************.***** ******.  ***  ..

312. spacer 11.17|1937071|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to FN667788 (Campylobacter phage CP220, complete genome) position: , mismatch: 10, identity: 0.73 

gctgtatttataattttttatatttgagtaaattagc	CRISPR spacer
tgtataaaaataattttttatatttaattaaattata	Protospacer
  *.**   ****************.* *******

313. spacer 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_016820 (Leuconostoc mesenteroides subsp. mesenteroides J18 plasmid pKLE02, complete sequence) position: , mismatch: 10, identity: 0.73 

agagtggtttaagaaaataagttatttttcaaaacat	CRISPR spacer
ttatctcctcaagaaattaagttatttttaaaaacat	Protospacer
  * .  .*.****** ************ *******

314. spacer 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017937 (Leuconostoc mesenteroides strain LK-151 plasmid pLm151-a, complete sequence) position: , mismatch: 10, identity: 0.73 

agagtggtttaagaaaataagttatttttcaaaacat	CRISPR spacer
ttatctcctcaagaaattaagttatttttaaaaacat	Protospacer
  * .  .*.****** ************ *******

315. spacer 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014602 (Leuconostoc mesenteroides subsp. mesenteroides strain DRC0211 plasmid pDSK2, complete sequence) position: , mismatch: 10, identity: 0.73 

agagtggtttaagaaaataagttatttttcaaaacat	CRISPR spacer
ttatctcctcaagaaattaagttatttttaaaaacat	Protospacer
  * .  .*.****** ************ *******

316. spacer 19.23|3455382|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014602 (Leuconostoc mesenteroides subsp. mesenteroides strain DRC0211 plasmid pDSK2, complete sequence) position: , mismatch: 10, identity: 0.73 

agagtggtttaagaaaataagttatttttcaaaacat	CRISPR spacer
ttatctcctcaagaaattaagttatttttaaaaacat	Protospacer
  * .  .*.****** ************ *******

317. spacer 19.28|3455711|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to MN693392 (Marine virus AFVG_25M95, complete genome) position: , mismatch: 10, identity: 0.73 

cagtatcatccataaaaccatcaaattcagccaataa	CRISPR spacer
caagttcatcaatcaaaccatcaaattcagctacatc	Protospacer
**.  ***** ** *****************.*

318. spacer 19.43|3456699|35|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to AP014374 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S42-C54, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.714 

acagttcctgatgttgagaatccttctttgcccgt	CRISPR spacer
acagttcttcatgttgagaatccttcaactacaaa	Protospacer
*******.* ****************  .  * .

319. spacer 19.53|3454529|34|CP020378|PILER-CR matches to NZ_CP046302 (Staphylococcus hominis strain FDAARGOS_747 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706 

gcgaaagaa------ctgttatatataaaaataactaaaa	CRISPR spacer
------taattcctcctattatatttaaaaataactaaac	Protospacer
       **      **.****** **************

320. spacer 7.9|1427271|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 11, identity: 0.703 

ccaactaactcttcataatccatactcgttaactttg	CRISPR spacer
tttgaaaactcttcataatccatactctctaacatat	Protospacer
.. .  ********************* .**** *

321. spacer 11.17|1937071|37|CP020378|PILER-CR,CRISPRCasFinder,CRT matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.703 

gctgtatttataattttttatatttgagtaaattagc--	CRISPR spacer
ttcacatttataattttttgtgtttgagtaa--cagtca	Protospacer
 ....**************.*.*********  .**.

322. spacer 13.4|2885408|35|CP020378|CRISPRCasFinder matches to NZ_CP031276 (Staphylococcus xylosus strain 2 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.686 

tttgcttataaagtagtagacgaagctaaaaagct	CRISPR spacer
gaaaaatctaaagcagtagacaaagctaaaaagaa	Protospacer
   .  * *****.*******.***********

323. spacer 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_021727 (Acinetobacter baumannii BJAB07104 plasmid p1BJAB07104, complete sequence) position: , mismatch: 11, identity: 0.676 

ctctggga----tgttgatagaacctattttgataagg	CRISPR spacer
----aaggccattgttgattgaacttattttgataaat	Protospacer
    ..*.    ******* ****.***********.

324. spacer 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018422 (Acinetobacter baumannii strain XDR-BJ83 isolate male patient plasmid pBJ83, complete sequence) position: , mismatch: 11, identity: 0.676 

ctctggga----tgttgatagaacctattttgataagg	CRISPR spacer
----aaggccattgttgattgaacttattttgataaat	Protospacer
    ..*.    ******* ****.***********.

325. spacer 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_017848 (Acinetobacter baumannii MDR-TJ plasmid pABTJ1, complete sequence) position: , mismatch: 11, identity: 0.676 

ctctggga----tgttgatagaacctattttgataagg	CRISPR spacer
----aaggccattgttgattgaacttattttgataaat	Protospacer
    ..*.    ******* ****.***********.

326. spacer 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KM922672 (Acinetobacter baumannii strain A221 plasmid pAZJ221, complete sequence) position: , mismatch: 11, identity: 0.676 

ctctggga----tgttgatagaacctattttgataagg	CRISPR spacer
----aaggccattgttgattgaacttattttgataaat	Protospacer
    ..*.    ******* ****.***********.

327. spacer 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NC_021731 (Acinetobacter baumannii BJAB0868 plasmid p2BJAB0868, complete sequence) position: , mismatch: 11, identity: 0.676 

ctctggga----tgttgatagaacctattttgataagg	CRISPR spacer
----aaggccattgttgattgaacttattttgataaat	Protospacer
    ..*.    ******* ****.***********.

328. spacer 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018144 (Acinetobacter baumannii strain HRAB-85 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.676 

ctctggga----tgttgatagaacctattttgataagg	CRISPR spacer
----aaggccattgttgattgaacttattttgataaat	Protospacer
    ..*.    ******* ****.***********.

329. spacer 14.8|3098933|34|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK386682 (Acinetobacter baumannii strain ABAY10001 plasmid pABAY10001_1C, complete sequence) position: , mismatch: 11, identity: 0.676 

ctctggga----tgttgatagaacctattttgataagg	CRISPR spacer
----aaggccattgttgattgaacttattttgataaat	Protospacer
    ..*.    ******* ****.***********.

330. spacer 19.32|3455976|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to MN694760 (Marine virus AFVG_250M661, complete genome) position: , mismatch: 11, identity: 0.703 

aaaagaacttggagttaaagaaaaagtatttgtatca	CRISPR spacer
cgatgcgacgggagttaaagaaaaaatatctgtatct	Protospacer
 .* * . . ***************.***.******

331. spacer 19.41|3456567|38|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MN602039 (Staphylococcus capitis strain APC2923 plasmid pJOS_01, complete sequence) position: , mismatch: 11, identity: 0.711 

cagaattcatcacaaatttatgctaaaattttattgaa	CRISPR spacer
tttttctcatcacaaattttttctaaaattttaagtaa	Protospacer
.    .************* * ***********   **

332. spacer 19.45|3456829|37|CP020378|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019826 (Leptotrichia hofstadii strain JCM16775 plasmid pJCM16775-3, complete sequence) position: , mismatch: 11, identity: 0.703 

agttttgatattttcttttaatacatttaaaaaatag	CRISPR spacer
ttgcctgttattttcttttaacacatttaaagcaaaa	Protospacer
   ..** *************.*********. * *.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 202435 : 245444 35 Geobacillus_virus(14.29%) transposase,protease NA
DBSCAN-SWA_2 283166 : 299342 14 Synechococcus_phage(23.08%) NA NA
DBSCAN-SWA_3 454861 : 467859 13 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_4 530580 : 547983 16 Streptococcus_phage(91.67%) NA NA
DBSCAN-SWA_5 750284 : 793818 44 Geobacillus_virus(33.33%) coat,transposase,protease NA
DBSCAN-SWA_6 1228969 : 1282070 87 Clostridium_phage(71.43%) plate,portal,tail,terminase NA
DBSCAN-SWA_7 1408357 : 1448215 56 Clostridium_phage(84.62%) head,transposase,tail,capsid,protease NA
DBSCAN-SWA_8 1511154 : 1520829 11 Geobacillus_virus(16.67%) transposase NA
DBSCAN-SWA_9 1575151 : 1599467 29 Clostridium_phage(54.55%) tail NA
DBSCAN-SWA_10 1678422 : 1688151 11 Pandoravirus(37.5%) NA NA
DBSCAN-SWA_11 2139531 : 2147262 9 Clostridium_phage(42.86%) transposase NA
DBSCAN-SWA_12 2633342 : 2640988 9 Bacillus_phage(50.0%) integrase attL 2628221:2628234|attR 2643630:2643643
DBSCAN-SWA_13 3083132 : 3140111 86 Clostridium_phage(67.12%) plate,portal,integrase,tail,terminase attL 3077935:3077952|attR 3146201:3146218
DBSCAN-SWA_14 3241743 : 3250696 8 Catovirus(50.0%) NA NA
DBSCAN-SWA_15 3805010 : 3873696 70 Clostridium_phage(50.0%) plate,integrase,protease,tail attL 3822728:3822746|attR 3832286:3832304

Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
CP020378.1|AXU26995.1|1232871_1233075_+|hypothetical-protein 1232871_1233075_+ 67 aa aa NA NA NA 1228969-1282070 yes