CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP030142	Leptospira mayottensis strain VS2413 chromosome I, complete sequence	4 crisprs	csa3,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,Cas9_archaeal,DinG,RT	1	22	6	0
CP030143	Leptospira mayottensis strain VS2413 chromosome II, complete sequence	0 crisprs	csa3	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP030142_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030142_1

358454-359581

Orphan

NA:I-E,II-B

Consensus_repeat	Method
CGGTTCAACCCCACGTGTGTGGGGAAAAG	CRISPRCasFinder
CGGTTCAACCCCNCGTGTGNGGGGAAAAG	CRT
CGGTTCAACCCCACGTGTGTGGGGAAAAG	PILER-CR

18 spacers

The CRISPR arrays of CP030142_1

>merge|CP030142|1|358454-359581|CRISPRCasFinder,CRT,PILER-CR
TAATGCAACTCCACGTGTGCGGGGAAAAGAAATTATTAATCTTCACAAAGGGGCCGAAACACGGTTCAACCCCGCGTGTGCGGGGAAAAGCAATCGCAGAACTCGGCTGGGGTATTGAGGGCCGGTTCAACCCCGCGTGTGCGGGGAAAAGCAATCGCAGAACTCGGCTGGGGTATTGAGGGCCGGCTCAACCCCGCGTGTGCGGGGAAAAGCAATCGCAGAACTCGGCTGGGGTATTGAGGGCCGGTTCAACCCCGCGTGTGCGGGGAAAAGCGACAAAACTTAATTTGATTCTACCGCTTTATCGGTTCAACCCCGCGTGTGTGGGGAAAAGTTATTGGATAGTGGATACGATCTGAATACGTGCGGTTCAACCCCACGTGTGTGGGGAAAAGTAAAATAGAGGTACCAATCAAAACTGGATCAACGGTTCAACCCCACGTGTGTGGGGAAAAGCAAAATTCGGGAACCGGTTATTCCAACTCCCACGGTTCAACCCCGCGTGTGCGGGGAAAAGTCCTTCAGTTGCGTTTTGCGTGCGTTTTCTCGCGGTTCAACCCCACGTGTGTGGGGAAAAGCAAATGAAACGCGCAAGCGAAGGATGGGAAAACGGTTCAACCCCACGTGTGTGGGGAAAAGCGATGAGATCGTAGAATGGTTTAAATCGCTTCCGGTTCAACCCCACGTGTGTGGGGAAAAGTTTTACAGTCGATCCTATGCGATCATATAATTCGGTTCAACCCCGCGTGTGTGGGGAAAAGAGGACTACAGAAAGAAATCCGAGGAGTGACCACGGTTCAACCCCACGTGTGTGGGGAAAAGTGACCTTCGCCACCTTTTTCCTCTTCCATAGCCGGTTCAACCCCACGTGTGTGGGGAAAAGTTTCGAGTTGTGAGTCCTTTTCATAGTATTAGCGGTTCAACCCCACGTGTGTGGGGAAAAGTTATAGCGGATGCGTATTACGTTTATTTATTTGGGTTCAACCCCACGTGTGTGGGGAAAAGTCAAGGTAGCTAGAGCAATTGATGATCAAAGTGCGGTTCAACCCCACGTGTGTGGGGAAAAGTTTTAACAGACGAAACGAATTGATTGATATTACGGTTCAACCCCACGTGTGTGGGGAAAAG

>CP030142|1|1|358454-359581|CRISPRCasFinder
TAATGCAACTCCACGTGTGCGGGGAAAAG	AAATTATTAATCTTCACAAAGGGGCCGAAACA
CGGTTCAACCCCGCGTGTGCGGGGAAAAG	CAATCGCAGAACTCGGCTGGGGTATTGAGGGC
CGGTTCAACCCCGCGTGTGCGGGGAAAAG	CAATCGCAGAACTCGGCTGGGGTATTGAGGGC
CGGCTCAACCCCGCGTGTGCGGGGAAAAG	CAATCGCAGAACTCGGCTGGGGTATTGAGGGC
CGGTTCAACCCCGCGTGTGCGGGGAAAAG	CGACAAAACTTAATTTGATTCTACCGCTTTAT
CGGTTCAACCCCGCGTGTGTGGGGAAAAG	TTATTGGATAGTGGATACGATCTGAATACGTG
CGGTTCAACCCCACGTGTGTGGGGAAAAG	TAAAATAGAGGTACCAATCAAAACTGGATCAA
CGGTTCAACCCCACGTGTGTGGGGAAAAG	CAAAATTCGGGAACCGGTTATTCCAACTCCCA
CGGTTCAACCCCGCGTGTGCGGGGAAAAG	TCCTTCAGTTGCGTTTTGCGTGCGTTTTCTCG
CGGTTCAACCCCACGTGTGTGGGGAAAAG	CAAATGAAACGCGCAAGCGAAGGATGGGAAAA
CGGTTCAACCCCACGTGTGTGGGGAAAAG	CGATGAGATCGTAGAATGGTTTAAATCGCTTC
CGGTTCAACCCCACGTGTGTGGGGAAAAG	TTTTACAGTCGATCCTATGCGATCATATAATT
CGGTTCAACCCCGCGTGTGTGGGGAAAAG	AGGACTACAGAAAGAAATCCGAGGAGTGACCA
CGGTTCAACCCCACGTGTGTGGGGAAAAG	TGACCTTCGCCACCTTTTTCCTCTTCCATAGC
CGGTTCAACCCCACGTGTGTGGGGAAAAG	TTTCGAGTTGTGAGTCCTTTTCATAGTATTAG
CGGTTCAACCCCACGTGTGTGGGGAAAAG	TTATAGCGGATGCGTATTACGTTTATTTATTT
GGGTTCAACCCCACGTGTGTGGGGAAAAG	TCAAGGTAGCTAGAGCAATTGATGATCAAAGTG
CGGTTCAACCCCACGTGTGTGGGGAAAAG	TTTTAACAGACGAAACGAATTGATTGATATTA
CGGTTCAACCCCACGTGTGTGGGGAAAAG

>CP030142|1|1|358454-359581|CRT
TAATGCAACTCCACGTGTGCGGGGAAAAG	AAATTATTAATCTTCACAAAGGGGCCGAAACA
CGGTTCAACCCCGCGTGTGCGGGGAAAAG	CAATCGCAGAACTCGGCTGGGGTATTGAGGGC
CGGTTCAACCCCGCGTGTGCGGGGAAAAG	CAATCGCAGAACTCGGCTGGGGTATTGAGGGC
CGGCTCAACCCCGCGTGTGCGGGGAAAAG	CAATCGCAGAACTCGGCTGGGGTATTGAGGGC
CGGTTCAACCCCGCGTGTGCGGGGAAAAG	CGACAAAACTTAATTTGATTCTACCGCTTTAT
CGGTTCAACCCCGCGTGTGTGGGGAAAAG	TTATTGGATAGTGGATACGATCTGAATACGTG
CGGTTCAACCCCACGTGTGTGGGGAAAAG	TAAAATAGAGGTACCAATCAAAACTGGATCAA
CGGTTCAACCCCACGTGTGTGGGGAAAAG	CAAAATTCGGGAACCGGTTATTCCAACTCCCA
CGGTTCAACCCCGCGTGTGCGGGGAAAAG	TCCTTCAGTTGCGTTTTGCGTGCGTTTTCTCG
CGGTTCAACCCCACGTGTGTGGGGAAAAG	CAAATGAAACGCGCAAGCGAAGGATGGGAAAA
CGGTTCAACCCCACGTGTGTGGGGAAAAG	CGATGAGATCGTAGAATGGTTTAAATCGCTTC
CGGTTCAACCCCACGTGTGTGGGGAAAAG	TTTTACAGTCGATCCTATGCGATCATATAATT
CGGTTCAACCCCGCGTGTGTGGGGAAAAG	AGGACTACAGAAAGAAATCCGAGGAGTGACCA
CGGTTCAACCCCACGTGTGTGGGGAAAAG	TGACCTTCGCCACCTTTTTCCTCTTCCATAGC
CGGTTCAACCCCACGTGTGTGGGGAAAAG	TTTCGAGTTGTGAGTCCTTTTCATAGTATTAG
CGGTTCAACCCCACGTGTGTGGGGAAAAG	TTATAGCGGATGCGTATTACGTTTATTTATTT
GGGTTCAACCCCACGTGTGTGGGGAAAAG	TCAAGGTAGCTAGAGCAATTGATGATCAAAGTG
CGGTTCAACCCCACGTGTGTGGGGAAAAG	TTTTAACAGACGAAACGAATTGATTGATATTA
CGGTTCAACCCCACGTGTGTGGGGAAAAG

>CP030142|1|1|358515-359581|PILER-CR
CGGTTCAACCCCGCGTGTGCGGGGAAAAG	CAATCGCAGAACTCGGCTGGGGTATTGAGGGC
CGGTTCAACCCCGCGTGTGCGGGGAAAAG	CAATCGCAGAACTCGGCTGGGGTATTGAGGGC
CGGCTCAACCCCGCGTGTGCGGGGAAAAG	CAATCGCAGAACTCGGCTGGGGTATTGAGGGC
CGGTTCAACCCCGCGTGTGCGGGGAAAAG	CGACAAAACTTAATTTGATTCTACCGCTTTAT
CGGTTCAACCCCGCGTGTGTGGGGAAAAG	TTATTGGATAGTGGATACGATCTGAATACGTG
CGGTTCAACCCCACGTGTGTGGGGAAAAG	TAAAATAGAGGTACCAATCAAAACTGGATCAA
CGGTTCAACCCCACGTGTGTGGGGAAAAG	CAAAATTCGGGAACCGGTTATTCCAACTCCCA
CGGTTCAACCCCGCGTGTGCGGGGAAAAG	TCCTTCAGTTGCGTTTTGCGTGCGTTTTCTCG
CGGTTCAACCCCACGTGTGTGGGGAAAAG	CAAATGAAACGCGCAAGCGAAGGATGGGAAAA
CGGTTCAACCCCACGTGTGTGGGGAAAAG	CGATGAGATCGTAGAATGGTTTAAATCGCTTC
CGGTTCAACCCCACGTGTGTGGGGAAAAG	TTTTACAGTCGATCCTATGCGATCATATAATT
CGGTTCAACCCCGCGTGTGTGGGGAAAAG	AGGACTACAGAAAGAAATCCGAGGAGTGACCA
CGGTTCAACCCCACGTGTGTGGGGAAAAG	TGACCTTCGCCACCTTTTTCCTCTTCCATAGC
CGGTTCAACCCCACGTGTGTGGGGAAAAG	TTTCGAGTTGTGAGTCCTTTTCATAGTATTAG
CGGTTCAACCCCACGTGTGTGGGGAAAAG	TTATAGCGGATGCGTATTACGTTTATTTATTT
GGGTTCAACCCCACGTGTGTGGGGAAAAG	TCAAGGTAGCTAGAGCAATTGATGATCAAAGTG
CGGTTCAACCCCACGTGTGTGGGGAAAAG	TTTTAACAGACGAAACGAATTGATTGATATTA
CGGTTCAACCCCACGTGTGTGGGGAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP030142.1\|AXR66924.1\|360508_360709_-\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR69651.1\|362549_363161_-\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR66918.1\|348248_348494_-\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR66926.1\|364486_365098_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215619
CP030142.1\|AXR66921.1\|352727_353045_+\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR66915.1\|343595_343913_-\|methylamine-utilization-protein	unknown	unknown	gnl\|CDD\|259883
CP030142.1\|AXR66916.1\|343938_344958_-\|tryptophan-tryptophylquinone-biosynthesis-enzyme-MauG	unknown	unknown	gnl\|CDD\|163503
CP030142.1\|AXR66917.1\|345761_347663_-\|DUF1561-domain-containing-protein	unknown	unknown	gnl\|CDD\|284921
CP030142.1\|AXR69652.1\|366457_367312_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372314
CP030142.1\|AXR66914.1\|343236_343596_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|365823
CP030142.1\|AXR66920.1\|351837_352098_-\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR69653.1\|370419_371769_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
CP030142.1\|AXR66930.1\|370222_370408_+\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR66929.1\|369079_370018_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368098
CP030142.1\|AXR66928.1\|367776_368775_+\|transposase	unknown	unknown	gnl\|CDD\|372671
CP030142.1\|AXR66922.1\|353065_353245_+\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR66919.1\|349722_351624_-\|DUF1561-domain-containing-protein	unknown	unknown	gnl\|CDD\|284921
CP030142.1\|AXR66925.1\|363335_363635_-\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR66923.1\|354163_356833_+\|collagenase	unknown	unknown	gnl\|CDD\|366791
CP030142.1\|AXR66927.1\|366133_366385_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP030142.1\|AXR66917.1\|345761_347663_-\|DUF1561-domain-containing-protein	gnl\|CDD\|284921	pfam07598, DUF1561, Protein of unknown function (DUF1561). A family of paralogous proteins in Leptospira interrogans.	0
CP030142.1\|AXR66929.1\|369079_370018_-\|hypothetical-protein	gnl\|CDD\|368098	pfam04754, Transposase_31, Putative transposase, YhgA-like. This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.	5.05693e-66
CP030142.1\|AXR66926.1\|364486_365098_-\|hypothetical-protein	gnl\|CDD\|215619	PLN03185, PLN03185, phosphatidylinositol phosphate kinase; Provisional.	2.98738e-06
CP030142.1\|AXR66915.1\|343595_343913_-\|methylamine-utilization-protein	gnl\|CDD\|259883	cd04221, MauL, Methylamine utilization protein MauL. MauL is one of the products from the methylamine utilization gene cluster in Methylobacterium extorquens AM1. Mutants generated by insertions in mauL were not able to grow on methylamine or any other primary amine as carbon sources. MauL belongs to the blue or type I copper protein family. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form.	2.0435e-35
CP030142.1\|AXR66928.1\|367776_368775_+\|transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	2.04715e-13
CP030142.1\|AXR66916.1\|343938_344958_-\|tryptophan-tryptophylquinone-biosynthesis-enzyme-MauG	gnl\|CDD\|163503	TIGR03791, TTQ_mauG, tryptophan tryptophylquinone biosynthesis enzyme MauG. Members of this protein family are the tryptophan tryptophylquinone biosynthesis (TTQ) enzyme MauG, as found in Methylobacterium extorquens and related species. This protein is required to complete the maturation of the TTQ cofactor in the methylamine dehydrogenase light (beta) chain.	2.71554e-108
CP030142.1\|AXR66919.1\|349722_351624_-\|DUF1561-domain-containing-protein	gnl\|CDD\|284921	pfam07598, DUF1561, Protein of unknown function (DUF1561). A family of paralogous proteins in Leptospira interrogans.	0
CP030142.1\|AXR69652.1\|366457_367312_-\|hypothetical-protein	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	7.31422e-52
CP030142.1\|AXR66923.1\|354163_356833_+\|collagenase	gnl\|CDD\|366791	pfam01752, Peptidase_M9, Collagenase. This family of enzymes break down collagens.	6.68444e-49
CP030142.1\|AXR66914.1\|343236_343596_-\|cytochrome-c	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	1.07887e-10
CP030142.1\|AXR69653.1\|370419_371769_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	8.57133e-09

>CP030142.1|AXR66923.1|354163_356833_+|collagenase
MITNIKCKIMLALSVIITFSLGCNSQNNGLKNDLSLFATMFAQTTQQITTRSVTRSVSSLDEPIGFNPIQVENEQDFDKITDGKKRILVPSVMTFGPTHSSSNGTVQNATSSNCTGSYVARLSPKAFVRFLETHDINCVDKFVWSYDHQYSDYIYSQANMLEVVNRLEVLAPSYRGNNDLNFIQLFRMFWAGYYVKASHPSLPFDKDQISQALVAPMRTFTNSAYLLDGTDDAGKVLEFFFTAADSTGNGHIIYPGLLSFLEATLNDPQRLTNNSSQMIALNAVFRLLKRHILPQNREFLNKIDFRLIDKLRGFALDTSLNTNSSVWIINNAIFCLDRIYEYLPAFQPRIVSTVTDVLETYPYISQPYLQAVKALTRNSDCADLRIGRICLSDTKEVVKRMVFPNTYYFDDKAQIVHTSLSIDEIQPLYHALKEVESQFFRLIGIHAPVSGDTTDSISMYVYGSKKDYETFHPFLFDLSTDNGGIYIEGDKTFYTYQRTPAESIYTLEELLRHEYTHYLVGRFIIPGLWSQTPAHDNERLSWFEEGIAEFLTGSTSREIRPRKSLISEIKRDGSSRMNLSQILTARYGDFKFYRYSGVFFNYLYAYKKDTLRDLISTLRDSNIQKFDYLITQMSRDTWLNTSFQAYLDYLVGNVDNLTDPSTTAPDLANLSTNSPKVIRSFFRKTNTGSKAKCTTAAFGLNSRFSCRGLILGNAAYSPDWNSAWSDLNSRINDLMSTLENSGVNNFKSMNCRIGEIRFDKHENLFRPFAIYSCEGPLASRPRISYRHPQRSQTDFRNTRLGQHSTCFANPSTGSGTTCNIPISTIAFSNTATYEEMYQNLNADLNELKSEIYTMRPSFYRKLDCNFDSIDTVNLPDGRKYLAARSSCNL
>CP030142.1|AXR66922.1|353065_353245_+|hypothetical-protein
MAKHGLPIVILLRTCLKTSECRDFNKNLTIIKSVRKLVNYQRDAICKTPIFYYELTESL
>CP030142.1|AXR66921.1|352727_353045_+|hypothetical-protein
MGFLPFSIIWAITILHYYVFEIREHIIEEELNLPFLNRIPSFLILKLFKILNPEEYCSRVISSKTNVVLKITSVNSDLLNHENSKPLNNKERTEVLARIFFQRTR
>CP030142.1|AXR66920.1|351837_352098_-|hypothetical-protein
MQHIQIELQLESAEEIKRWFIEYLHFEIEELILTVLDQDKRSPSWLSIYFSLFLRKFIEVGGYRIVLSYFLVLEFGWENCSTNVRF
>CP030142.1|AXR66919.1|349722_351624_-|DUF1561-domain-containing-protein
MNRFIVLIVVLLISIGVDFSYGVSPALVHILSSVVSDSIVQKPTDNPKDKAIKIVIHDGGKFCYAPVFSGGESYIQLEQCWEQDVSSARYDVFQRISYYINKTWLCITAPEGVILGERNWDYVHLRPCTINDPLQRWIVKENSFWTADERYRLKDVKWYAYISKKSKDSYNHTLDSSMKDWVQTVATPGNISIKTSIAWNLGNSRYFIHSKGSKKNTTSIYYNPESGHVAQYNPVSGRLSCMYSKVGSYQWNWIRWVLCDDIPTSKDSPAYWDVYLETEEGGMLKDYKGNILRVTRYGSHWGVVYAAKPSFLEKDTRNSPTSLFLVDGYLLDWIRYAAGNLGNTEQYCPAGNKESHVYKRIKRTLPPDFQLTDDWIRRLYQIATSSVTTAQGSGVCGVCLLQGFQMLAELQEYYSQGPLQSGGYFFDTARNRDPFVSFGQRYPSLNRLLTDVPDVYNRVTTASDTNRQLVLASARIMLPQYNWIVSSEFTTRSEIQSHISSLINSPPGSIWLGILGRRRSDETLGWHAVPILRTSQGLVVIRTRVPSAPFDLYRQALTPTTDLLEVINNLQTPSRTLTRLITIQLEGGYHNTFDSMISNRDCTGEGDDRRGTGGYPTSTSVNQCLRSCRCALL
>CP030142.1|AXR66918.1|348248_348494_-|hypothetical-protein
MRVCPKTSDYRNLDENLTVVKYARKLVNYQRGVIGGNFYILLRTYRIIVTRVLEQTLIEDKVNLILVLKRFTMAFHSVPDR
>CP030142.1|AXR66917.1|345761_347663_-|DUF1561-domain-containing-protein
MNRFIVLIVVLLISIGVDFSYGVSPALVHILSSVVSDSIVQKPTDNPKDKAIKIVIHDGGKFCYAPVFSGGESYIQLEQCWEQDVSSARYDVFQRISYYINKTWLCITAPEGVILGERNWDYVHLRPCTINDPLQRWIVKENSFWTADERYRLKDVKWYAYISKKSKDSYNHTLDSSMKDWVQTVATPGNISIKTSIAWNLGNSRYFIHSKGSKKNTTSIYYNPESGHVAQYNPVSGRLSCMYSKVGSYQWNWIRWVLCDDIPTSKDSPAYWDVYLETEEGGMLKDYKGNILRVTRYGSHWGVVYAAKPSFLEKDTRNSPTSLFLVDGYLLDWIRYAAGNLGNTEQYCPAGNKESHVYKRIKRTLPPDFQLTDDWIRRLYQIATSFSSIGRGQVRGVCGVCLLQGFQMLAELQEYYSQGPLQSGGYFFDTARNRDPFVSFEQRYPLLNRLLTDVPRVYDSIDYSNRQLALASARTMLPQYNWIISSEFTTRSEIQSHISSLINSPPGSIWLGILALLCPDGTLGWHAVPILRTSQGLVVIQTNVRSMPFNIYREYLTPTTDLLEVINNLQTPNRTLARLVTIQLREAYHNIFDFMISNRDCTGEGDDRRGTGRYPTSTLVNRCSMRGGRCTLL
>CP030142.1|AXR66916.1|343938_344958_-|tryptophan-tryptophylquinone-biosynthesis-enzyme-MauG
MFRILWAVFLIFSLLLIFTCKEEKKEVVRKEGETKKVETIAYPFPPDNAPTPERILLGKTLFFDPILSGSNWISCATCHNPGLAWTDGLKTAVGHNMKILGKNTPTILNGAYGSKMFWDGRADNLEAQALGPISSPDEMNQDIDELILELKNIRGYKELFSRAYPNEDINAVTIGKAIASFERTILSTESTFDRWKKGDKTAISESAQRGFSVFNGKAKCSACHQGDQFSDNGFHNIGLKNAFKEVGRFKIVAVKSMKGAFKTPGLRDVALTGPYMHDGSYATLEEVVEHYDRGGDEKNNLDPNMTTLKLTKDEKADLVEFMKSLNGKMISISIPEFPR
>CP030142.1|AXR66915.1|343595_343913_-|methylamine-utilization-protein
MLVRFTAVFIFLVFCGGSLAAAEHEVGQKNKGFTVESLKIKVGDVVSFPNYDTFYHNVYSLSPTKIFDLGSYSQGKTQKVKFEKPGKITVQCAIHPEMKMTIDVQ
>CP030142.1|AXR66914.1|343236_343596_-|cytochrome-c
MKIYSKIIILFLFSASTFSLTALDTMEKSAVRGSIVFRTYCVLCHGEAADGKGRLATGKVPPPANLTITKLTNAQKEEIIKKGGIGVNRSPFMPPWQEELSEEQIKDVISYINFLSKSK
>CP030142.1|AXR66924.1|360508_360709_-|hypothetical-protein
MSNTRSFKCCVADWNEEIHLEFKIPLKKFELRTGQTYHIEGLFSTRNLLIIKTGFFPFRREKSRSV
>CP030142.1|AXR69651.1|362549_363161_-|hypothetical-protein
MQDINSSQASQLVSQVAVKLENPEELKEHLLGTWVFELTLNGEKVISTGFFGGLEPEKEYVVNVPSGFYDLKVNLLGDYVRPFRGRVWSTLEKGDYFRKKEFIRQVDLQPNKKYIVIIKKSNEIETDTLYTIMAFWQIFFYPVGYWPIKGMVVELDVKEAPVLSNAESTSRVNPESRAFFRKNIPAKGKGKRNSELGNTIRHY
>CP030142.1|AXR66925.1|363335_363635_-|hypothetical-protein
MKEYIQKTIKLENGDRVILYDSDKIKGKIPVFEFNRNVIKVDKNDVILWRIKVPGKDDWEAPFLEIKLRQGKLIAYHWAGGEFEVNLEDGSIKLIQEHR
>CP030142.1|AXR66926.1|364486_365098_-|hypothetical-protein
MITKYIRNWLIAGAVVLAAFYYIPRINFSCIEGDCYSGEGVYTYNNTYYYGSFQKGYRHGYGMEKYPGGCTYYGFFEGGHKQHYGSYVCEKDNYSFTTFWNNGGYHSTVFYTCGNKTYYGKWAGFRGTLICISGDCENGVGKAISPFRKIIYFGRFTDSKLHGYGEEIDACTGKILYKGKFIHSHKEKDYDAEAHKPVQGLDY
>CP030142.1|AXR66927.1|366133_366385_+|hypothetical-protein
MSQNLKSNQHQLTLSCWSFFYPISVKVSSYHFTFLNDTPIFRNQLSTFGVDSCTPSHSRAVRVCFCNLKGKMEGDFKNLEPTL
>CP030142.1|AXR69652.1|366457_367312_-|hypothetical-protein
MFKTLFVKEPKLLISMLNSVIFTNQEHRIQELTILNPELTGPSAKDKRSYLDIRAKDETGRIFHVEIQVAHENSFVKRSLYYLSGLIRDQLKSGEGYSDLKAVYQVNIVDFNLIPSENYHSKFKFREESNPEITLTDELEIHYIELPKLTEEDHLRLLREGSDLYRWMYLFKHTSELTEEEMSILVDKTPDLSKAFTILEQYSNDPKKRKEIEEKLKSDRDYVYDLAARFEAGERQGIEKGIEKGEFKKALEAARKMLAEGIKLDVVLRVTGLTEKDLGDHGIR
>CP030142.1|AXR66928.1|367776_368775_+|transposase
MPFSALLKYNPKLEYATAVPFFMDFIFSTSNNFWFWLMVLEKLILFFFWKFSPKQIAYVYRVFKTKCKSFLKLSSKGRPTRRDYWDIYYQIKDMLRDNLDWGASKIHGEILKLGFNLSLSTVKRILNKILKRSNPSGNWKYWWKLLDHLKGEIVAMDLCRIQTIYGTTLYALAFIQHSSREIIHFNITEHPTRDWVLLQIKEAKSLCSGFQTLLRDNDVLFSGQKILNGLEEFGIQSLHTPLASPWCNGIMERWFGSLRRECFNLIPIFSLHHAHRVAQEYIEYYNQWRPHLALNKDSPCGRVVTFPTPTSKVIKRKVLGGLHYVYSHSEVA
>CP030142.1|AXR66929.1|369079_370018_-|hypothetical-protein
MTEVNNPHDRLIRETFQDKKEAATFFKNTLAPEVVKLLDLENLELTESSFISEELKQEQTDLLFQIPLKSGNKSNVYLLFEHKSYLENTIYIQLLGYLTEIYRNQQRNGEPLSVIIPFVFYHGEKEWKLGDRFLDQFVLTKQETEILKDFIPDFKIDLFDLKEVELKKKLESITFQVTLGVVQKIREGDLEFVSHLPGLFSLLLGIEEESKRVAILRKLLLYIYWARDLKPTELKRVLERSKLEQYEELTVTTAERLISEGIQQGVEKGKIEGKVEGKLEDAGKMLKKGIDLKTVLEITGLSEKTLKENGIL
>CP030142.1|AXR66930.1|370222_370408_+|hypothetical-protein
MKFSSYHFTFLNETPVFRTRLSTVGVDPTACVHSFHFFIFSSEILIFLYSPLLCQLKSLLI
>CP030142.1|AXR69653.1|370419_371769_-|N-acetylmuramoyl-L-alanine-amidase
MLLGSVLLAGPEDRGTPNSKTTRPLSPLKTFKVVIDPGHGGLDLKPKEDHGDKYDPISDKYLELYKAGASFKEKKEKTIVLELSKELKEVLDLTKTEEGFKIFRSYMKLFTSDDIPWIRIDSVMTRNENAEEREYSSNEDPNAPFRLFDYPDKKTKKVQQGRISFINREKPNLVVSLHLNPSYKEHPGGMAAVLTPSYRTFYILKGIGEGRFEKEKFERSPWSEWMVFKSGWSKLENAIADAWIYFHGYWPNQSGKKTDLSAFEGYRQNMIHWKYKDVPGWEELAKLGGKGPYSKSHKDFIAEGKFWEREKSQPELWRREDGREGFGGDNHYASAELMRFVQYGLRKRKTEGKPGPINKPYLSTYALPTFINAISAYLEIGYIDKEKDMILMTKYKKDVAISLAAGIYSLVHGLKIKKQNYPYIPVGKKINWKRYETRKEGNYFQIVSE

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Crispr_ID: CP030142_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030142_2

596984-597368

Orphan

I-E,II-B

Consensus_repeat	Method
CTTTTCCCCACACACGTGGGGTTGAACCG	CRISPRCasFinder
CTTTTCCCCACACACGTGGGGTTGAACCG	CRT
CGGTTCAACCCCACGTGTGTGGGGAAAAG	PILER-CR

6 spacers

The CRISPR arrays of CP030142_2

>merge|CP030142|2|596984-597368|CRISPRCasFinder,CRT,PILER-CR
CTTTTCCCCACACACGTGGGGTTGAACCGGATACGACGCCGTTGCACGAATCTTTTCCCCACACACGTGGGGTTGAACCGATCGACATCGTTCGCGATCTTTCACTCTGGGACTTTTCCCCACACACGTGGGGTTGAACCGAATGTGACCCGGAGCCACTGCAACTTTTTTATCTTTTCCCCACACACGTGGGGTTGAACCGGACGTTAATTCTGAGTCCACAATGATTCGAAACTTTTCCCCACACACGTGGGGTTGAACCGCATTTCTTTTGTATACCCTGCCTCTTCTTCCACTTTTCCCCACACACGTGGGGTTGAACCGGAGCAGAGTGGCTTGCGATCTATGATCATAACCTTTTCCCCGCACACGTGGAGTTGCATTA

>CP030142|2|2|596984-597368|CRISPRCasFinder
CTTTTCCCCACACACGTGGGGTTGAACCG	GATACGACGCCGTTGCACGAAT
CTTTTCCCCACACACGTGGGGTTGAACCG	ATCGACATCGTTCGCGATCTTTCACTCTGGGA
CTTTTCCCCACACACGTGGGGTTGAACCG	AATGTGACCCGGAGCCACTGCAACTTTTTTAT
CTTTTCCCCACACACGTGGGGTTGAACCG	GACGTTAATTCTGAGTCCACAATGATTCGAAA
CTTTTCCCCACACACGTGGGGTTGAACCG	CATTTCTTTTGTATACCCTGCCTCTTCTTCCA
CTTTTCCCCACACACGTGGGGTTGAACCG	GAGCAGAGTGGCTTGCGATCTATGATCATAAC
CTTTTCCCCGCACACGTGGAGTTGCATTA

>CP030142|2|2|596984-597368|CRT
CTTTTCCCCACACACGTGGGGTTGAACCG	GATACGACGCCGTTGCACGAAT
CTTTTCCCCACACACGTGGGGTTGAACCG	ATCGACATCGTTCGCGATCTTTCACTCTGGGA
CTTTTCCCCACACACGTGGGGTTGAACCG	AATGTGACCCGGAGCCACTGCAACTTTTTTAT
CTTTTCCCCACACACGTGGGGTTGAACCG	GACGTTAATTCTGAGTCCACAATGATTCGAAA
CTTTTCCCCACACACGTGGGGTTGAACCG	CATTTCTTTTGTATACCCTGCCTCTTCTTCCA
CTTTTCCCCACACACGTGGGGTTGAACCG	GAGCAGAGTGGCTTGCGATCTATGATCATAAC
CTTTTCCCCGCACACGTGGAGTTGCATTA

>CP030142|2|2|597035-597307|PILER-CR
CTTTTCCCCACACACGTGGGGTTGAACCG	ATCGACATCGTTCGCGATCTTTCACTCTGGGA
CTTTTCCCCACACACGTGGGGTTGAACCG	AATGTGACCCGGAGCCACTGCAACTTTTTTAT
CTTTTCCCCACACACGTGGGGTTGAACCG	GACGTTAATTCTGAGTCCACAATGATTCGAAA
CTTTTCCCCACACACGTGGGGTTGAACCG	CATTTCTTTTGTATACCCTGCCTCTTCTTCCA
CTTTTCCCCACACACGTGGGGTTGAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP030142.1\|AXR67111.1\|607825_608593_+\|beta-ketoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|187594
CP030142.1\|AXR67097.1\|585320_586847_-\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|370050
CP030142.1\|AXR67107.1\|604097_604907_-\|prohibitin-family-protein	unknown	unknown	gnl\|CDD\|259799
CP030142.1\|AXR67106.1\|601209_603450_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226352
CP030142.1\|AXR67094.1\|581663_582410_-\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153233
CP030142.1\|AXR67101.1\|593798_594002_+\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR67105.1\|600343_601060_+\|PhoU-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273990
CP030142.1\|AXR67108.1\|605109_605535_-\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR67096.1\|583891_584896_+\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR67100.1\|591372_593850_-\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
CP030142.1\|AXR67099.1\|590174_591299_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	unknown	unknown	gnl\|CDD\|99740
CP030142.1\|AXR67104.1\|599192_599615_+\|MAPEG-family-protein	unknown	unknown	gnl\|CDD\|376462
CP030142.1\|AXR69679.1\|589353_589836_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
CP030142.1\|AXR67103.1\|597682_598876_+\|M23-family-peptidase	unknown	unknown	gnl\|CDD\|366703
CP030142.1\|AXR67102.1\|594235_595669_+\|adhesin	unknown	unknown	gnl\|CDD\|377878
CP030142.1\|AXR67109.1\|606285_606960_-\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR67098.1\|587489_588971_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143452
CP030142.1\|AXR67110.1\|606956_607664_-\|esterase	unknown	unknown	gnl\|CDD\|223477
CP030142.1\|AXR67095.1\|582470_583160_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|274056
CP030142.1\|AXR67112.1\|609755_610457_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225136

Protein	Function_ID	Function_description	E-value
CP030142.1\|AXR67111.1\|607825_608593_+\|beta-ketoacyl-ACP-reductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	1.0713e-108
CP030142.1\|AXR67097.1\|585320_586847_-\|HDOD-domain-containing-protein	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	1.60393e-61
CP030142.1\|AXR67107.1\|604097_604907_-\|prohibitin-family-protein	gnl\|CDD\|259799	cd03401, SPFH_prohibitin, Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of the SPFH (band 7) domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains, in addition to being stable scaffolds, may also be dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a hetero-oligomeric complex with Bap-37 (prohibitin 2, an SPFH domain carrying homolog). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologs have been implicated in yeast longevity and in the maintenance of mitochondrial morphology.	1.51048e-48
CP030142.1\|AXR67106.1\|601209_603450_+\|hypothetical-protein	gnl\|CDD\|226352	COG3831, COG3831, Uncharacterized conserved protein [Function unknown].	3.75209e-07
CP030142.1\|AXR67094.1\|581663_582410_-\|DJ-1/PfpI-family-protein	gnl\|CDD\|153233	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	3.82599e-86
CP030142.1\|AXR67105.1\|600343_601060_+\|PhoU-family-transcriptional-regulator	gnl\|CDD\|273990	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function. [Regulatory functions, Other, Transport and binding proteins, Anions].	7.78724e-25
CP030142.1\|AXR67102.1\|594235_595669_+\|adhesin	gnl\|CDD\|377878	pfam07603, DUF1566, Protein of unknown function (DUF1566). These proteins of unknown function are found in Leptospira interrogans and in several gamma proteobacteria.	2.24195e-28
CP030142.1\|AXR67100.1\|591372_593850_-\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
CP030142.1\|AXR67099.1\|590174_591299_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	1.52454e-112
CP030142.1\|AXR69679.1\|589353_589836_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.02289e-61
CP030142.1\|AXR67103.1\|597682_598876_+\|M23-family-peptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.70387e-24
CP030142.1\|AXR67095.1\|582470_583160_+\|HAD-family-hydrolase	gnl\|CDD\|274056	TIGR02252, Rhythmically_expressed_gene_2_protein, REG-2-like, HAD superfamily (subfamily IA) hydrolase. This family of proteins includes uncharacterized sequences from eukaryotes, cyanobacteria and Leptospira as well as the DREG-2 protein from Drosophila melanogaster which has been identified as a rhythmically (diurnally) regulated gene. This family is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called 'capping domain', or the absence of such a domain. This family is a member of subfamily 1A in which the cap domain consists of a predicted alpha helical bundle found in between the first and second catalytic motifs. A distinctive feature of this family is a conserved tandem pair of tryptophan residues in the cap domain. The most divergent sequences included within the scope of this model are from plants and have "FW" at this position instead. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.	3.08957e-72
CP030142.1\|AXR67098.1\|587489_588971_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143452	cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase AlkH-like. Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.	0
CP030142.1\|AXR67110.1\|606956_607664_-\|esterase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	9.37224e-33
CP030142.1\|AXR67104.1\|599192_599615_+\|MAPEG-family-protein	gnl\|CDD\|376462	pfam01124, MAPEG, MAPEG family. This family is has been called MAPEG (Membrane Associated Proteins in Eicosanoid and Glutathione metabolism). It includes proteins such as Prostaglandin E synthase. This enzyme catalyzes the synthesis of PGE2 from PGH2 (produced by cyclooxygenase from arachidonic acid). Because of structural similarities in the active sites of FLAP, LTC4 synthase and PGE synthase, substrates for each enzyme can compete with one another and modulate synthetic activity.	1.38475e-11
CP030142.1\|AXR67112.1\|609755_610457_-\|SAM-dependent-methyltransferase	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	7.18744e-26

>CP030142.1|AXR67102.1|594235_595669_+|adhesin
MNQTFGLLWMFAAILLFASCSQAERINIDTSSTTGLLFQGGIALGPGPNNQSQDQGDLESSEPKEINSFRFQASNHFFTTDFVGEISGTLITVQVPFGAIYRLKATFISTGVNVEVNGVPQTSGQTVNNFSSPVIYRVTATDKSVKDYTVQVIPIFRLTDAGQINCFFTFCNDDPGQDADYSTGVPKTFQSNIVLSDYTTQPVTIDRQTGLTWKYCAAGLNSAACSAYNNYSYTQSDAVTYCNNLNQINTGLGYAGIRNWRLPEIEELMTLSTHKTPSTTYIDLTEFPFGDGEFWSNTTNMSNTAEAWGFDFTYGSNNSANKSSRNMLVRCVSGGTMPVRSFSDFNNGTVKDNLTGLVWQKCSVGQTWSPISSLCNIGSITSHNFISALSICKNLNLDGRTWRLPNVHELRSLLDFPSTTSAKINRTFFPNTPAASQYVTSNSIPGSQIFRVSFTDGVINTANLSTPNYVRCVSDDL
>CP030142.1|AXR67101.1|593798_594002_+|hypothetical-protein
MEQLNSLQYPINPLKAPKDLLKSKNIPGEPDFVQVPIPEEILKSNPIHFVLKKPQKPEELSLRINLQ
>CP030142.1|AXR67100.1|591372_593850_-|endopeptidase-La
MEPLEDLSGIEENSIVPLDLILPPELFLVPIKSRPVFPGIITPLIVPNGKFAKAVEQSLRGNSFLGLVLLKDEENEKETSENIYQFGVVAKILKKVHLPDDAVNILINTIRRFKIDSYTSKDPLIAKVSYPEEEPGAPKNTIKAMMRTLLVMTRELAQNNPLFTEEMKLTMLNVNEPGKMADFVCSILNLEKEEYQSVIESNILKERIEKVLLFLKKEIELVSIQREISDQIQDKIDKQQRQFFLREQLKAIQNELGIKDDKFEKKYEKFLERLKSIGADTEVIEEVSRELDKFSYADPNTGDYNVIRNYLDILESLPWEPAPAREIDLDKAKKTLDRDHYKLEDVKDRILEFLAVKKLKSDEKGTILLLVGPPGVGKTSIARSIAEAMGRKFFRFSVGGMRDEAEIKGHRRTYIGSMPGKIISALRITKEKDCVILLDEIDKLAAGIQGDPASAFLEVLDPEQNKNFRDHYLDLPFDISNVFFIATANTLDSISRILLDRMEIINLSGYITDEKVQIFQRYLWKKVLAKNGVTSYGIEFDKKAVVSLIDSYSRESGVRGLEKVTDKLVRKIAMKIVKKEPFPKVILEKNLEMFLGVPKFTNERMVRTSVPGTALGLAWTSVGGATLLIEALFVKGKGGILLTGMIGKTMEESSNIALSYIKNFLNKDELFNDRMIHLHVPDGATPKDGPSAGITMATAILSLALNIKVKAGYGMTGELTLTGEVLAIGGLREKIVAAKRVGIYKIIYPKDNLQHLEEIPDYVKKGMSFFPVSRYEEVAAMVFDEKVLLKVNPSFKENLKLITTSAGKTALKKKTVSKKRTTPSK
>CP030142.1|AXR67099.1|590174_591299_-|DegT/DnrJ/EryC1/StrS-family-aminotransferase
MGVPFIDIKRFEPGLLEEWEEKVKILSKNASFIGGEEVSLLERNLASQAETNYSVACANGTDALQLALRALGVGKGDAVLLPDSTFWATFESVVNVGADPYTVDTDPDDLQMDFTVFEKALEKVKPKAAIIVHLYGWGSARLEDFRKLCKSKGIPLLEDGAQCYGVRYRGTSIYKDALIATTSFYPAKVLGGAGDGGAVFTNDEKLANKVRMLANHGRISHYAYGDVGWNSRLDTLQAAFLNINLKHLEARIVSRRKIAQRYYEILPNLGIRVIHPPKDYEENGYCNVTLAAAEERSLIQDVLKEKEIGFGNIYPGAMSDQPGAKSYIKEKFGDKHTTGKICASVLNYPLFPYMKEEELEEIFSAIRAYNSKKK
>CP030142.1|AXR69679.1|589353_589836_-|DNA-starvation/stationary-phase-protection-protein
MKDIDIGISEKNRETINTGLQKLLADTYILYFKTHSYHWNVTGPQFNTLHLMFQTQYNELWLSIDLIAERIRSLGFYAPSSSHQLGKLTSIHEEGGVPHAEDMVRHLVSGHETVIRTARSLLPAADEGGDEVTLDLLTQRLEVHEKTAWMLRSLLIVENT
>CP030142.1|AXR67098.1|587489_588971_+|aldehyde-dehydrogenase-family-protein
MPTIQESPVKLPYSDLTPTLPSIDKTEIERVFHLQKKHFHKVMKLTTASQRIQRLKKLREAIFKYTPEIEKAVNADFRKNEREVDITEIMPSISEINDAIKHVRRWMKPVNAKTPVTLFGAKSQILYEPRGVVLIIGPWNYPFYLTFAPLAAAIAAGNTVLIKPSEFTPVTSNLIQKIITEVFPKEEVAVFEGDYQVSGALMELPLDHIFFTGSTQVGKIVMTAAAKHLTSVTLELGGKSPAIIDKSADIKKAAKKLVWGKVLNAGQTCVAPDYLLIPNDLIKPFVEEAKSVIKEFYGKDGKALKENPDFCRIVNDRNFNRVSGYIHEAVEKGAKIEMGGETDASQNYIEPTLLSNVPENSNIMEDEIFGPVLPMIPYTNLDEAIEKINSKPKPLALYIFGKKERPIKKILKETSSGGVAVNDVILHLVNPYLPFGGVNHSGHGSYHGYFGFKAFSHERSVLRQAALSSIGLMYPPYTNFVKRLVTLTKKFLV
>CP030142.1|AXR67097.1|585320_586847_-|HDOD-domain-containing-protein
MSQNKTLEFHHHSDLGLYSNLKDLDHPVLENSPVHYRFHNLTEDVDSIISRTLDRYLLQLDIIYVRDSVFTTLKETIANSIKANVKRIYFRELKADIHNPETYKQKILGFKKDYLDNKEKYEELLFKNNFVVLVSFVYNKDMIRIRVMNNVKLSLTEVERINQRIGKAKLYNDLAEAFLEAGDETEGAGLGLVMSLMMLKNDGLSETSYKIESQGDNTSVIIDIPLSVTKENLQLQQTQDILRNIDGLPTFPRLIQDIQAMIEKPNSSIAQIAEVIKKDVALSANILKLANSAAFIRANKVETLDRAIQLIGLKELSQLLFSLGTKQILENKFPVFLSIWEKSNQCAFYCKLIASRTELPKDAVSNLMSAALLHDIGEIILISLEERTMKNIGKISASKEIASAVSMEEAALGITHTKVGALIAEKWNFPDLYAKAMEFHHRPLTVEEEYISYIYPIYLADMMIKINNEEAKYGEIPEKVLQFCKFESAGDFHSFRTKALESFLSRTR
>CP030142.1|AXR67096.1|583891_584896_+|hypothetical-protein
MNEILSNFNHPRFKTDDLAGHYESWFVRANNPNACQAVWIRYTIFSPKDHPEKAIGELWAIYFDGEKNTHFVSKSEFPIEKCKFHSIPFSVRIGDSELSDSYLLGKAGNSKGPEKFFWDLKISGGSAALFLFPENLYEGNFPKAKVLVGNPRVKVSGSLKLGSQEIQVQNWIGSHNHNWGSKHTDQYAWGQVVGFEEEADSFLELATAKLKIGPIWTPAITPVVFRFKGKDYKLNHPFLSFGRAKYRYFDWNFVANSSEIQIRGRIHAEPQDFACLQYWNPPGGWKYCLNSKIANTELFVKRKEDLIYSKLTSNRKTAFEILTDDFSHGMKPEV
>CP030142.1|AXR67095.1|582470_583160_+|HAD-family-hydrolase
MSYDKYLFLDVGDTILHLKKSAGETYFEILVEAGFKKEKNAQEFYRKAFLESWHKMHENSPPEHRDKYQFHPGGTQGWWKELLADFLERIPDRVSLEKAFPIIYNKFADPELWTVDPGFWKLKNYCKNENWGLGVISNWDHRLRALLEAKEISEYLNPIIVSAEFGYEKPSPKIFEEAMRLVRLSGDCLVYCGDKYELDVVVPRSLGWRSYLKNKKGDLESLSELIRFL
>CP030142.1|AXR67094.1|581663_582410_-|DJ-1/PfpI-family-protein
MKVVLKYLRSEFVSGSNLSIGIFIFSNVTQLDFTGPYEVFSRIPNVKIFLFAQSKEPIVAESGMKWIPDYDFSNCPDFDILLVPGGAGTTLLMEEFEVLNFLKTKTENSKFITSVCTGSLVLAAAGLLDGYKATTHWLSLDVLKLFPVQISGERFVKDRNRITGSGVTAGIDFALFLTAELFGTELAEEIQLMIEYNPAPPFTSGHPTTATSHLVEKVKLSRETTQNRRKAAAIRVLAFNKKTSKSGL
>CP030142.1|AXR67103.1|597682_598876_+|M23-family-peptidase
MRNFIVVLIFTVFTFSGLLAKTSDFNGECKPKEWICILTRNENNKVEFYVQNQTPSGEYPFIIYFNFSTLNNFEADVPLPYRFVSKGSSEPKKFLTISPIDARKERSYNSNIYVKAGDDGSKARNLPYRLPFESSSRVGQGYNGKFTHTGIFTYALDFTLSEGSPILAAREGLVIAIQDKYQSGGTISFYKDKANFIQILHKDGSIAEYAHLKHKGISVQIGQIVQTGERIGFSGNTGFSSAPHLHFHVLRHKEDLQTLESVPISFETDEGVLDELKEGVVYWNPSNTLPAGKIFFEEDLKICSEFIQKKLSECEEKFNPQKRPILALEVRKPGKYDLKVEVCNPDSICKRIDWTLQPEWKSSVSYFDWNLFPGQPGKYKIQVINDIEIIKTWIVER
>CP030142.1|AXR67104.1|599192_599615_+|MAPEG-family-protein
MHPAIIALLGFVSWTLVLGLWLVSIRSFKVLMGTNKSDEFPAGIKHGSEFYWRLNRAHLNCIENLPVFGVLVLIGGFIGVLDETFGLVSQIVLGARIFQTLAHLSSGSVFAINTRFTGFIVQYGSFIYFLWHILHNTGIV
>CP030142.1|AXR67105.1|600343_601060_+|PhoU-family-transcriptional-regulator
MFSKFDFLRKNLYSMAELCLEQVLLLDDALEKDDSELAKKLIDRDDLIDNLEKQNDNLSQNAILEAVANRNSMGMDQVDGEVVLKRDPLRFALSAIRITRNLERMGDQIVNCAKCFRRGLIPKRFFCEEEILNKLLSRVITIVGMAVESLVEEKNRFYGSVHTVEEEINNLCQSAFLKFVMDPRLDKNQFADVYRLILCLERTGDYAVNMAEELVRLNTGMDIRHVSDPVQAIAETIS
>CP030142.1|AXR67106.1|601209_603450_+|hypothetical-protein
MKKHFIYSENGSEIFWQIEISGLSLVLSSGKTGNAIAKRSIRNFKTREQCFKEFQKLIDQKSELGFRESDRIPTFKTLNGNTDYLTTWNAVLEAPDRKKALRSHFEILTETEECAAVLDQIVSKIEEIYIENDQFVFTLPWHYDEETKVHIRWNAPYIGRIHSSVPHSMAKFVTNFNGVSFHHDNDDLAITWVLGVEPKDKEKSALVVGDGGWEKEILEKGDDWWIVPAPLEILEQCFGDIQCFGGAFDNGQQIWYVFHPFIKNKFGELAVTTIDHESCELEPTLVGFGMGGFILREIANWILGTRKYDSGQELTLSGSPVVTQAFQEFLAHKAVAISKNHPEIAKRLLEFDWHTLADSIHKTISEWVCSLAKEVAVEKDILVIDSYWDDAGEVIFLGLDWHSGTDYEDAISEGANEIDYPLDFTSFYKLVLGKDQNAELDGDEVVETLEDDYSIIRDILTYLSIENLISVANGEDFQKLPLDEKGVYIAYSHYHDEEAEVVYHSIEGIKKEFFKSLFSTEGKNKKEREVPEEEQELIDDIVGDVMENYPWIWKDTIEKSMNRLAENFQENKERYQREFNKILEYKEKVDEEEKTTLSNLGMQMSSAALNRFLRENKPDAAKWVLQCYSDIYRSLEINGNSTFTGNETGNSYNTAEYFAGDIIVFITKYNESQYLALLEDLLPADIQDARLVFNLACLNSLEKNKENVLRYTKLALSLGKPKKDFEDSDFDNFKDDPEFHSLIVLR
>CP030142.1|AXR67107.1|604097_604907_-|prohibitin-family-protein
MNKKRFWFVLFLLPTLYCGSTVRAGEIGLFWKPFGFSDVGLHKEPVLNGFYWLLPWNDIYTYSTQWNAYKEKVDVLTNDDLKIDVQAIIIMRPIREEVYKLHIEVGPEYYRSIVQPEFRASIRNVVSHHQMIQISKNSAVLAKDIKTAVIERTKGKHIEVFDVILDDIEYSSNMLHAIETKLTKQQELEQQKYELEIAEKNIEIAKKRARADAEAQLIRAEAQAKSQVIINDKLTTRYLQYKSFESPNSKLIFVPQGRDNLPIVVNPKE
>CP030142.1|AXR67108.1|605109_605535_-|hypothetical-protein
MSVQFRIVVFFGKELLQNSTRIIIEVAPYIFFFFFSIPVLIWSRSNGESTIDGKYKYYNVGLQDQFTYLEINGQIENLSGKDHAEAFFTMNFYDKDDILLETCQFAIQGFPSGHKRDFYASVKYVDPKRIKRFTIEFEGEN
>CP030142.1|AXR67109.1|606285_606960_-|hypothetical-protein
MTKLIEKYIALKNKYRNYDTKEALKRMQAFRIVLKDLGEKGFHTGVEILGSINFGIVETASDIDCILLHFCDLHKEVECPEYCPNFLYETEEIKTSLRKRLNDENLKVEFLDCINLRMVEKAMEQKENLKDSDLLKRLMFYRTIGRPVNRPLFIPYCEKLEENEEFIRDILDWGSEALEDYLRTSRHRFSFSKYNERIESSGLQLPPGLKEELKSYLDEVPENG
>CP030142.1|AXR67110.1|606956_607664_-|esterase
MQSSYNRPLEMVGSIEAVHLPGNPEAYTVVLFHGYGANAYDLSPLSAYLDLPDGTNWLFPNGILEVPVMPGYNGRAWFPIDMEALQKAMMTGGYRDFSDRYPAGLESAREKAMEMIRSLGIPMNKIILGGFSQGAMLATDMTLHSEVAPAGLMILSGTLISETDWKRLAEQKKEYKFFQSHGRIDPVLGYPAAKKLEQLLIGAGWKGEMIAFQGGHEIPEIVLRGMNLYLRNITG
>CP030142.1|AXR67111.1|607825_608593_+|beta-ketoacyl-ACP-reductase
MSKQFEGKVALVTGAASPRGLGRAIANTIAKEGGDIVVVDLNKEHIEQAAADITKEFGVKTLGLSCNVTKPDDCDSVISGVKEKFGKLDFLVNNAGVLKDNLFMRMSEQEFDFVLDVNLKGVFLMTKYASKLLLKAESGRIVNISSVSGLTGQPGQANYSSSKAGVIALTKVAAREFAGRNVLVNAVCPGYVQTDMTASLPEEVQKKLTDPMFIPLRRPGTQQEIANAVKFFLSDQSNYITGTYLRVDGGAAIGM
>CP030142.1|AXR67112.1|609755_610457_-|SAM-dependent-methyltransferase
MIFSGNFENQRRFFDLFSKSYGFMEILTFGFANRARKRFLKILDPTNDGIVCDLMCGNGNNVGILRKNFRCKRIIGVDVSSGMIQVARDRFGEERVFYVIENALASSIPSNYCDFVSCSFGLKTLRPEQRILLINEVHRILKPSGTFVFMELSKPVGFVSVFWKFYFLFFLPWMARLFSYPFVRKKYLTDLISDFGSIFSEEEFYRKVFSKLKFFRWYGGIVTGVLGEKTETS

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Crispr_ID: CP030142_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030142_3

1805781-1806419

TypeI-E

I-E,II-B

Consensus_repeat	Method
CGGTTCAACCCCACGCATGTGGGGAATAG	CRISPRCasFinder
CGGTTCAACCCCACGCATGTGGGGAATAG	CRT
CGGTTCAACCCCACGCATGTGGGGAATAG	PILER-CR

10 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP030142_3

>merge|CP030142|3|1805781-1806419|CRISPRCasFinder,CRT,PILER-CR
AGCTCAAACCCCACGCATGTGGGGAATAGTTAGTTCCGAACGAATACTTTCTAAAGTTTTCGGTTCAACCCCACGCATGTGGGGAATAGTGTTTTCGTAATGCCCTTAAACGAGAGTGTAACGGTTCAACCCCACGCATGTGGGGAATAGCGATTTCGCGAGCATAAGGAGGAAAACCCGACCGGTTCAACCCCACGCATGTGGGGAATAGTCACAGTAACTATAATCAAAAACGGAAAAAAACGGTTCAACCCCACGCATGTGGGGAATAGTGGGTTTTCTGATTTTATTGTGATCGCCCTTTCGGTTCAACCCCACGCATGTGGGGAATAGCTGGCGATTGAAACAGGAATCCCACGGTCAAACGGTTCAACCCCACGCATGTGGGGAATAGGCAACTCGACTTGAGAAGGCCGAAATTGAATGTCGGTTCAACCCCACGCATGTGGGGAATAGTCTTAGTTTGTTCTAATATCTCTATGCTGGATCGGTTCAACCCCACGCATGTGGGGAATAGTCGTTTAGCATCAGAGATCATGTTAGGATCATCGGTTCAACCCCACGCATGTGGGGAATAGTTTTAAAATGCAAAATCCTGAGTTATGTTTCTCGGTTCAACCCCACGCATGTGGGGAATAG

>CP030142|3|3|1805781-1806419|CRISPRCasFinder
AGCTCAAACCCCACGCATGTGGGGAATAG	TTAGTTCCGAACGAATACTTTCTAAAGTTTT
CGGTTCAACCCCACGCATGTGGGGAATAG	TGTTTTCGTAATGCCCTTAAACGAGAGTGTAA
CGGTTCAACCCCACGCATGTGGGGAATAG	CGATTTCGCGAGCATAAGGAGGAAAACCCGAC
CGGTTCAACCCCACGCATGTGGGGAATAG	TCACAGTAACTATAATCAAAAACGGAAAAAAA
CGGTTCAACCCCACGCATGTGGGGAATAG	TGGGTTTTCTGATTTTATTGTGATCGCCCTTT
CGGTTCAACCCCACGCATGTGGGGAATAG	CTGGCGATTGAAACAGGAATCCCACGGTCAAA
CGGTTCAACCCCACGCATGTGGGGAATAG	GCAACTCGACTTGAGAAGGCCGAAATTGAATGT
CGGTTCAACCCCACGCATGTGGGGAATAG	TCTTAGTTTGTTCTAATATCTCTATGCTGGAT
CGGTTCAACCCCACGCATGTGGGGAATAG	TCGTTTAGCATCAGAGATCATGTTAGGATCAT
CGGTTCAACCCCACGCATGTGGGGAATAG	TTTTAAAATGCAAAATCCTGAGTTATGTTTCT
CGGTTCAACCCCACGCATGTGGGGAATAG

>CP030142|3|3|1805781-1806419|CRT
AGCTCAAACCCCACGCATGTGGGGAATAG	TTAGTTCCGAACGAATACTTTCTAAAGTTTT
CGGTTCAACCCCACGCATGTGGGGAATAG	TGTTTTCGTAATGCCCTTAAACGAGAGTGTAA
CGGTTCAACCCCACGCATGTGGGGAATAG	CGATTTCGCGAGCATAAGGAGGAAAACCCGAC
CGGTTCAACCCCACGCATGTGGGGAATAG	TCACAGTAACTATAATCAAAAACGGAAAAAAA
CGGTTCAACCCCACGCATGTGGGGAATAG	TGGGTTTTCTGATTTTATTGTGATCGCCCTTT
CGGTTCAACCCCACGCATGTGGGGAATAG	CTGGCGATTGAAACAGGAATCCCACGGTCAAA
CGGTTCAACCCCACGCATGTGGGGAATAG	GCAACTCGACTTGAGAAGGCCGAAATTGAATGT
CGGTTCAACCCCACGCATGTGGGGAATAG	TCTTAGTTTGTTCTAATATCTCTATGCTGGAT
CGGTTCAACCCCACGCATGTGGGGAATAG	TCGTTTAGCATCAGAGATCATGTTAGGATCAT
CGGTTCAACCCCACGCATGTGGGGAATAG	TTTTAAAATGCAAAATCCTGAGTTATGTTTCT
CGGTTCAACCCCACGCATGTGGGGAATAG

>CP030142|3|3|1805841-1806419|PILER-CR
CGGTTCAACCCCACGCATGTGGGGAATAG	TGTTTTCGTAATGCCCTTAAACGAGAGTGTAA
CGGTTCAACCCCACGCATGTGGGGAATAG	CGATTTCGCGAGCATAAGGAGGAAAACCCGAC
CGGTTCAACCCCACGCATGTGGGGAATAG	TCACAGTAACTATAATCAAAAACGGAAAAAAA
CGGTTCAACCCCACGCATGTGGGGAATAG	TGGGTTTTCTGATTTTATTGTGATCGCCCTTT
CGGTTCAACCCCACGCATGTGGGGAATAG	CTGGCGATTGAAACAGGAATCCCACGGTCAAA
CGGTTCAACCCCACGCATGTGGGGAATAG	GCAACTCGACTTGAGAAGGCCGAAATTGAATGT
CGGTTCAACCCCACGCATGTGGGGAATAG	TCTTAGTTTGTTCTAATATCTCTATGCTGGAT
CGGTTCAACCCCACGCATGTGGGGAATAG	TCGTTTAGCATCAGAGATCATGTTAGGATCAT
CGGTTCAACCCCACGCATGTGGGGAATAG	TTTTAAAATGCAAAATCCTGAGTTATGTTTCT
CGGTTCAACCCCACGCATGTGGGGAATAG

Protein	Signature genes	Signature genes Name	Protein_function
CP030142.1\|AXR68066.1\|1801900_1802557_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|183298
CP030142.1\|AXR68078.1\|1817023_1817452_-\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR68070.1\|1804378_1805530_+\|DUF5009-domain-containing-protein	unknown	unknown	gnl\|CDD\|226749
CP030142.1\|AXR68075.1\|1810116_1811190_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP030142.1\|AXR68061.1\|1796223_1797399_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173844
CP030142.1\|AXR68077.1\|1811728_1813330_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl\|CDD\|187860
CP030142.1\|AXR68064.1\|1798851_1799586_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|132716
CP030142.1\|AXR68076.1\|1811186_1811723_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP030142.1\|AXR68073.1\|1808296_1809097_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
CP030142.1\|AXR69772.1\|1816263_1816488_-\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR68069.1\|1804084_1804270_-\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR68065.1\|1799766_1801899_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP030142.1\|AXR68072.1\|1806812_1807697_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP030142.1\|AXR69771.1\|1813341_1816134_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP030142.1\|AXR68074.1\|1809369_1810116_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP030142.1\|AXR68067.1\|1803182_1803380_+\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR68068.1\|1803624_1803945_+\|QacE-family-quaternary-ammonium-compound-efflux-SMR-transporter	unknown	unknown	gnl\|CDD\|224987
CP030142.1\|AXR68071.1\|1806448_1806880_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
CP030142.1\|AXR68063.1\|1798449_1798845_+\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR68062.1\|1797419_1798460_+\|phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|270703

Protein	Function_ID	Function_description	E-value
CP030142.1\|AXR68066.1\|1801900_1802557_-\|glutathione-S-transferase	gnl\|CDD\|183298	PRK11752, PRK11752, putative S-transferase; Provisional.	6.01565e-70
CP030142.1\|AXR68070.1\|1804378_1805530_+\|DUF5009-domain-containing-protein	gnl\|CDD\|226749	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown].	3.94548e-56
CP030142.1\|AXR68075.1\|1810116_1811190_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.23976e-116
CP030142.1\|AXR68071.1\|1806448_1806880_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	1.54869e-34
CP030142.1\|AXR68077.1\|1811728_1813330_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	7.2853e-146
CP030142.1\|AXR68076.1\|1811186_1811723_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.18448e-26
CP030142.1\|AXR68065.1\|1799766_1801899_+\|sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.70271e-32
CP030142.1\|AXR68072.1\|1806812_1807697_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.44973e-142
CP030142.1\|AXR69771.1\|1813341_1816134_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.62195e-143
CP030142.1\|AXR68061.1\|1796223_1797399_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173844	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.	4.29162e-116
CP030142.1\|AXR68074.1\|1809369_1810116_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.34306e-51
CP030142.1\|AXR68073.1\|1808296_1809097_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	4.91095e-61
CP030142.1\|AXR68068.1\|1803624_1803945_+\|QacE-family-quaternary-ammonium-compound-efflux-SMR-transporter	gnl\|CDD\|224987	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism].	1.96277e-26
CP030142.1\|AXR68064.1\|1798851_1799586_+\|histidine-phosphatase-family-protein	gnl\|CDD\|132716	cd07040, HP, Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phosphorelay signaling system; phytases scavenge phosphate from extracellular sources. Deficiency and mutation in many of the human members result in disease, for example erythrocyte BPGM deficiency is a disease associated with a decrease in the concentration of 2,3-BPG. Clinical applications include the use of prostatic acid phosphatase (PAP) as a serum marker for prostate cancer. Agricultural applications include the addition of phytases to animal feed.	5.55263e-10
CP030142.1\|AXR68062.1\|1797419_1798460_+\|phosphotransferase-family-protein	gnl\|CDD\|270703	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins. This subfamily is composed of the N-terminal domains of vertebrate ACAD10 and ACAD11, and similar uncharacterized bacterial and eukaryotic proteins. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 are both significantly expressed in human brain tissues. They contain a long N-terminal domain with similarity to phosphotransferases with a Protein Kinase fold, which is absent in other ACADs. They may exhibit multiple functions in acyl-CoA oxidation pathways. ACAD11 utilizes substrates with carbon chain lengths of 20 to 26, with optimal activity towards C22CoA. ACAD10 may be associated with an increased risk in type II diabetes. The ACAD10/11-like subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	1.27653e-56

>CP030142.1|AXR68070.1|1804378_1805530_+|DUF5009-domain-containing-protein
MEKKSTQNKERILSLDLFRGMTVIGMILVNNPGSWSYIYSPLKHAEWNGCTPTDLVFPFFLFAVGVSIPISLYFKNGINRSKVWIGICIRSISLILLGLLLNFFGEWSFAELRVPGVLQRIGFVYWTVASLYLIFPGKKVLIFLILVLLVHTWILTHIIPPGELTVSLEQGKDIGAWIDRMIIGEKHLWKFSKTWDPEGLLSGIASIATSLFGVLCGFILFLREGVGKNRVLGIFGLGFLFTFVGLLWDQSLPMNKSLWTGSYAAYTAGLSFFCIGFFEYLNLLILLKEWNRLNLKILFQPLLVFGKNAILVFVGSGILARTLNLWTIMSENGKSIGIKTWFFSKLVFIADPYLASLLYAVLHLSVWWGILSFLDKRKIYIKV
>CP030142.1|AXR68069.1|1804084_1804270_-|hypothetical-protein
MNSKKLIYPVSSIFQFELRFEFFPDATTSVLDSIQRYSFCKHLRWGQFFRKLKSLFQNLRM
>CP030142.1|AXR68068.1|1803624_1803945_+|QacE-family-quaternary-ammonium-compound-efflux-SMR-transporter
MAWIYLIIASTFEIGFTTCLKLSDNFTKPTWIGGFVVSSVFSLAFLNKAVQTIPMGTAYAIWTGLGAAGTILVGIVIHGEPIDFWRGFFLSTLILSVLGLKFLVSE
>CP030142.1|AXR68067.1|1803182_1803380_+|hypothetical-protein
MIGYFSFWKVSILRISSRRNHNIARLIEPNLSYLRFSFERFPKLQVCFGSVFIGFLRFRLIIIKF
>CP030142.1|AXR68066.1|1801900_1802557_-|glutathione-S-transferase
MIELYSASTPNGRKVSIMLEELGIPYTIHPINLDKLEQKQEWFLKINPNGRIPAIIDKDNGNFAVFESGAILIYLAEKNGKFLPNDPKEKSIALQWLMFQMGGVGPMQGQAGVFLKYAPEKIPFAISRYQNETKRLYSVLDRRLGESKFLAGKELSIADIATWPWVNIHDWVEISLDEFPNLKRWNEELAKRPAFIKGKDIPNKKDHKNNAEEVKKKI
>CP030142.1|AXR68065.1|1799766_1801899_+|sensor-histidine-kinase
MTNLKNHSRFSVSDLGFLVFWISVILVIASFFGNYYYEERHIDRLIDNIHWTVSYLCAAALAWFGYFSVEGGIHRFRLWFALGLTANALGQLSWAIQVYLDYYIIPTPSDYLFPWVAPCFVIGYSIIVIECDRSRIRTAVLDALGLITAILTFSLALYLPQREGVGIPQLLPLINHPVSFLTAAALGVLLIPLLRLQPDKSWFFFILGMGGTGLCWLLWNAFFIVQIPPDGTVLNAGFSVSALILGYGALTWEPKFNDHPVWGRRFEAALRLLPLFEVVASSITIVLAGTLSGLPEGVRIIAWTGTTIVVVIASARQTFLVKEMTNAEQEIRLINEGLEGIVAKRTEELRTVNQYLTSKNEQVIQTIEDLKSTQKQLIRSEKMAVLGQLVAGIAHELNTPLGAIVSSNEGIRSVLSNSWEGLLRNYSRFTEEEKTIWEKLFSKGIALREFYDTREERVKRKKIAVLLNDFGFSEVMRLADMLTDLGISPDYVSENFKDLPQKEKLVMIAQNALSLSGLARASFTIEKAAEKASLVIQALKEYAYKDPAETTMGPVDVRKQLETVFTLYYSKYKTQVEIVRDMPETSCVWGNAESLTQVWINLIGNALYAMNYKGKMVISCKRAPTGLEIAIKDSGNGIEDTIRDRIFEPFFTTKPSGAGTGLGLDICRRIIEDHNGKIFFETSEQGTTFFVILPVAESSPEKLENSTLLI
>CP030142.1|AXR68064.1|1798851_1799586_+|histidine-phosphatase-family-protein
MSFVHLIRHGQANSRGENYDLLTQHGKDQSFALGKFMAQNGELPDRIVTGTLRRHIETAESFMQGVISVSGDREKYKDGSFVHQDAGWDEFSMELWSAYSKLLASKRSEFAKILSQYGKIRVRGGIRSAALFLRLTEEILRFWREGKETPEGIETYENFENRIFHSSNVLFSSANQERTFIFTSGTPISLVLNRFLRQDEDCFAWMPWIWNTSLNTFRWVRGKYLPVSINGVPHLPDNLSRTLL
>CP030142.1|AXR68063.1|1798449_1798845_+|hypothetical-protein
MQDKPTSADLLEAIQDFLMKEVLPQFKDKELLSYKTLVSWNMLGVVSREIRLGEELLDKELGRLVELLNKNLVIPSTLNEKKNLAHAWNIELRDKIRKEKLSSENSRYWNHVKETVKEKVEVINPRFTTER
>CP030142.1|AXR68062.1|1797419_1798460_+|phosphotransferase-family-protein
MNDTELKNVLEGYLSERLKGKTEIHSMVSLSGGACQENFAALIQVLDGPESGSYDTVFRTDKGAALLESLSREDEFGVCDLAYNAGVNTPKPFWLETDRGVTGSPFYFMQKISGKAIGRYVVKDPSLNKVRKQLTIDLAKNLARLHSIKPSDCKNEALRKTLWMGQDSNDKTVANGSIRSLRLELERMKDAYPAMEMILNWLEKKAKPSDDVVLIHGDFRTGNFMVTPEGLQGIVDWEFAHWGDRHEDLTWLCMRDWRFGKLNKEAGGFADRSEFYEEYEKVSGVKLNPEMVTYWEVMGNLRWAIGCIGQAERHLSGKDKGIELAAIGRRACEMEYEAMRIIENAG
>CP030142.1|AXR68061.1|1796223_1797399_+|acyl-CoA-dehydrogenase
MDFTIPKEVEEIKKRIRDFVENDAIPAEVHYDYDHGRMPEKITEELRKRVKELGLWTPHLPKSEGGLGLDMVGTAIIFSELGRSPIAPYLCNCDAPDEGNMHLLHIAANKEQKEKYYDPLIQGKIRSAFAMTEPPPGAGADPQTLTTNAVKDGNEYVINGQKWYCTGANGASFLIVMSKVADSFRRTTMFLVPTNTPGYTMVREIGVMGSHGPGGHCELKFENVRVPESAILGRVGEGFKWSQERLGPARLTHCMRWIGLARRSMEIAREYALKREVFGQKLADHQGIQWMFAESALEIESGYMLTLKAAHTLRAGEDARHIISMAKWQVSETLCKTIDRAIQICGSHGYGRDMKLELFYRDARAARIADGPTEVHKMVIGRNLISGKSDF
>CP030142.1|AXR68071.1|1806448_1806880_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MVVLILERVKTSQRGEMSRLAIELKPGVFVASINARVRDQIWKKISEEWKSDAIMLYSSNSEQGYGIRSHGDPSREIMDFDGLLLMSKPDSKHDQKVVMSVSDFSKVTEDEVSPFSDLKGFFNEKANSLLLEADDPNESKEQT
>CP030142.1|AXR68072.1|1806812_1807697_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MPNRNLQELPKFEDNWSHLYFEKGRIDQFQKSIGFHYLDKVVPIPIETIGLLLLGPGTSITHEAIKRISDSRCLLAWTGEGGVRFYSAGYTGTYSARNLLRQVEAYGNPKERVSVIRRMYQFRFSDEIPADATIEQIRGLEGARVRKIYREWSENSGVPWKSRSYDQNSWDWSDPINRALSSANACLYGVVHAAILQSGFSPAIGFVHTGKQLSFVYDIADLYKAEITIPLAFEITAENATNVERRVRLACRDKFKHSKLLKRIIPDIKELIYGGFDFGESEDFSEGRDVAVSH
>CP030142.1|AXR68073.1|1808296_1809097_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MFLSQLKLDTLNINNKIVFNWIQNPYNIHQRLWMAFPEYSSKDKLRDSPFLFQLDYNSDPGKISPRILVLSEKLPNWERAFQEFKVLTEIPVGNQIKQISPTFIQVGTVLRFSLTANPTKKRKDYRSLFKKELEGFPDKLDPSDRVSFLEGKSKLEDLKKTLTKDQFKKLKSKRIGIYHKKGLLDWLSKKGNDNGFSLLNAVVEFQSDISANKIKGSSSPSIPKIHTVTFSGILKITDPVKFKLAYSKGIGPSKAFGCGMLLLAKT
>CP030142.1|AXR68074.1|1809369_1810116_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKDYLVFRLYGPLVSWGNIAVGEYRPSDSFPTKSAIIGLISASFGFDRSEDGKISELVESVFFATKVFTPGSLLRDYHTIQSPGNVKRFLLTRKDELLDSEYVETILSSRDYRVDAVYDVALSEKKRTSYSLKEIKNALLSPIYTPYLGRKSCPIALPMCPEILSSDSLLNAFEEYNKILMKKYESADYKDPLADLFSKSSANLFLWEDPAIELAEQDHIHSRRDTVLSRKRWQFQDRKEFFKSVSKA
>CP030142.1|AXR68075.1|1810116_1811190_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MNRFIQIHFLTSYPPSNLNRDDLGRPKTAILGGANRLRISSQSLKRAWRTSDLFRETLSGHIGTRTKEKGKEIYQKLLDGKIPEKNARTWSKSIAGIFGKLKNPSEKELEKNPLLDLEIEQLSHFNKEENEAISSLIQKLIDTKKEPSNEDLNLLKKENSSSDIAMFGRMLASKPAFNIEAAVQVAHAITVHKVAIEDDFFTAVDDLNSGIEDVGAGHLGDVEFGSGLFYLYICVNRDQLLNNLNGNKDLAKRTIRALVETSSTISPTGKQNSFASRARALYCMTEKGNEQPRSLHSAFLNSVEDRGILNAAILKLESSRQNFEKVYGSCASGGFKTFNVDSGNGSLKEILEFAQED
>CP030142.1|AXR68076.1|1811186_1811723_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MRFYENKEKYKEIIINWWTDLRSQTGDRAALRRCSNGLDTLLIPYTHRLISQLFQEGFQFFPDKIGPIAGILSHIEEDNPSTPFARSMARKEGEKPVINKIRFRKILQYSDILSEELFYQNMVRIVKNLKKKANLLDLSLSVYFWNQKTRKDWAYDYYGTPTSENDLDNLENPQGENQ
>CP030142.1|AXR68077.1|1811728_1813330_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLIKDVWIPTQRFSGKLEEISPFEITSQIENDSDPIVSLNAPRPDFNGALLQFLIGLLQAVFPPENETEWEDLFVNPPSPKVLKEAMEKVESAFELFGDGPRFMQDTNLNEEDTVFDISALFIESPGENTIKLKKDFFIKRDSISQICEKCAGIGLFSFQTNSPSGGQGHLTSIRGGGPLSTFVTSKLKNPKKNSLWSKLWLNVLPKSYFQVNGQKKIPFQSVFPWTNPKIEDLQSKGKTTTTNDLYPLSIYWSYPRRILMRKETENGICDVCNRSSSVLVRSYHTKTYGLSYSEGGWIHPFSPYYKSKESWLPYHPQPGGILYHYWQTIALGKEQADQAALVVRRFLNRKIPGEQTSILTFGYDMDNMKARCWYESEIPFFNIPSDKIEKFEEQVSQILNASTEIKKNLRQAVRNAWFDKNKDTKGDLAFLDVSFLKDTENSFYDLIRNVKENLISGVADFAALKETWLKLLNKSACKLFDQYADSGSFEFEDPERIVEAKKNLKIFNLGSKTRIILGLIVPEKTSKRSKK
>CP030142.1|AXR69771.1|1813341_1816134_-|CRISPR-associated-helicase/endonuclease-Cas3
MKAEEKSYYKYWGKANKKGDYHLLVYHCFDVAAVGEVYLSQNKTLCVHFSQKLGIDPLTFKNIFVFFLILHDLGKFSDCFQSLIPNIKNALGNSNSPIGPYSIRHDSLGYIFWGRCILKDERFGNYSGFLTEQNWLGWNELQSPKDKSYFTEFTDVLIRCVTGHHGRPPSKNGYSGQTAVSLDSHFTEADRLAALDFSKEANRILSPNLNFKGDFKTLYDSMFQISFWLAGLSVLCDWIGSNAEIFKYHTTPIDLEEYYTKISLNNALKAVNKSGILPSKIAFNENHFGIFEYLQEPTPLQKFCSEVVLPDSPSLFILEDVTGSGKTEAALILTHRLMQKNAYSGFYVGLPTMATANGMYQRMSGVYRNLYTKESLPSLVLAHGARNLSDSFQSSVISDNAILADRNYSLQSDKNPEESASAICNIWLSDNQKKSLLADSGVGTIDQALLSVLSTKFQSLRMFGLSRKVLILDEVHSYDPYMVELICCLLKTQAKIGASVILLSATLPKILRKTFSESFALGLDTELQNIKSGEYPLVSLISDRSEVEETPIPTRKEVSRKLNVKFLFKQEPVLQKILEMSNQGRCVCWIRNTVSDASQAFSFLHSKLGDQVVLFHSRFAMGDRLNIESQILENFGIRSDQKSRKGKIVVATQVVEQSLDLDFDYIITDLAPIDLILQRAGRLHRHCRDISGNVKQGLDERGEPLLWIFSPEPIDDPKSDWFSQFSRGGGMVYSDHGKLWLTARLLQERKGWKMPEDARNLIESVYGIDVEVPQSFQENQSKVKNDKKKQESSAVLSTIRLELGYSALNETSWDDSKFSTRYGIDNSSKVVLAKFVSDRLVPWISDTNRNWQNSELPVPNYLVEKEFIFENSNIAEVISNCKINLPDKGKHCVLLPLFYTNNSWKGKALNKNNEVVSFIYDERFGFRKEK
>CP030142.1|AXR69772.1|1816263_1816488_-|hypothetical-protein
MTKNRKKFHSCQTTEFQRTQIMENSDSQHCTEYNQSSLLHVTHHFYEEENYHSNGFPKSDTEYPPKLRLLKSNS
>CP030142.1|AXR68078.1|1817023_1817452_-|hypothetical-protein
METTALRYELVKWPADFSSKFGISFKIYLKNNLQYGEIKLQDKATSLSDGFQSTKNTLCRICAVPKNLKISAKTNCDFTKVKKHIIILKFQFRKRNISKCFYKLYLNIPIFYFLKNIFHSKYFPMPLIKSIFASFQPKTNTQ

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Crispr_ID: CP030142_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030142_4

2172416-2172565

Orphan

I-E,II-B

Consensus_repeat	Method
CGGTTCAACCCCACGCATGTGGGGAAAAG	CRISPRCasFinder

2 spacers

csa3

The CRISPR arrays of CP030142_4

>merge|CP030142|4|2172416-2172565|CRISPRCasFinder
TTTCAACCCCACACGCATGTGGGGAAAAGTTATTTGATCGGTGAAATCGGAATATTGTAGGCGGTTCAACCCCACGCATGTGGGGAAAAGTCCACAGCCATCCAATTGTAGTTCCTAGGCCCGGTTCAACCCCACGCATGTGGGGAAAAG

>CP030142|4|4|2172416-2172565|CRISPRCasFinder
TTTCAACCCCACACGCATGTGGGGAAAAG	TTATTTGATCGGTGAAATCGGAATATTGTAGG
CGGTTCAACCCCACGCATGTGGGGAAAAG	TCCACAGCCATCCAATTGTAGTTCCTAGGCC
CGGTTCAACCCCACGCATGTGGGGAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP030142.1\|AXR68375.1\|2187178_2187817_-\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR68370.1\|2179731_2179923_+\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR68361.1\|2164275_2165343_+\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR69801.1\|2174864_2175629_-\|sphingomyelinase-C	unknown	unknown	unknown
CP030142.1\|AXR68374.1\|2185542_2186478_-\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR68373.1\|2184140_2185355_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
CP030142.1\|AXR68364.1\|2168792_2169599_+\|sterol-desaturase	unknown	unknown	gnl\|CDD\|377224
CP030142.1\|AXR68366.1\|2170175_2170670_+\|ATPase	unknown	unknown	gnl\|CDD\|176910
CP030142.1\|AXR68360.1\|2160424_2162449_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
CP030142.1\|AXR68363.1\|2167711_2168491_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187576
CP030142.1\|AXR68367.1\|2171142_2172237_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
CP030142.1\|AXR69800.1\|2173219_2173984_-\|sphingomyelinase-C	unknown	unknown	unknown
CP030142.1\|AXR68371.1\|2180359_2181244_-\|hypothetical-protein	unknown	unknown	unknown
CP030142.1\|AXR68362.1\|2166409_2167711_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176464
CP030142.1\|AXR69799.1\|2162462_2164265_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173862
CP030142.1\|AXR68369.1\|2178348_2179206_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
CP030142.1\|AXR68372.1\|2181720_2183541_+\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
CP030142.1\|AXR68365.1\|2169785_2170124_-\|transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
CP030142.1\|AXR68359.1\|2159543_2160419_+\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|238806
CP030142.1\|AXR68368.1\|2176707_2177934_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340946

Protein	Function_ID	Function_description	E-value
CP030142.1\|AXR68373.1\|2184140_2185355_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	3.47442e-34
CP030142.1\|AXR68364.1\|2168792_2169599_+\|sterol-desaturase	gnl\|CDD\|377224	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.	6.38196e-29
CP030142.1\|AXR68366.1\|2170175_2170670_+\|ATPase	gnl\|CDD\|176910	cd08901, SRPBCC_CalC_Aha1-like_8, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	1.63216e-47
CP030142.1\|AXR68360.1\|2160424_2162449_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
CP030142.1\|AXR68363.1\|2167711_2168491_+\|hypothetical-protein	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.22279e-13
CP030142.1\|AXR68367.1\|2171142_2172237_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	6.31818e-21
CP030142.1\|AXR68372.1\|2181720_2183541_+\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
CP030142.1\|AXR68362.1\|2166409_2167711_+\|adenylosuccinate-lyase	gnl\|CDD\|176464	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).	0
CP030142.1\|AXR69799.1\|2162462_2164265_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	6.03302e-176
CP030142.1\|AXR68369.1\|2178348_2179206_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	6.25008e-69
CP030142.1\|AXR68365.1\|2169785_2170124_-\|transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	1.54114e-11
CP030142.1\|AXR68359.1\|2159543_2160419_+\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|238806	cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.	4.69556e-117
CP030142.1\|AXR68368.1\|2176707_2177934_+\|MFS-transporter	gnl\|CDD\|340946	cd17388, MFS_TetA, Tetracycline resistance protein TetA and related proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of tetracycline resistance proteins similar to Escherichia coli TetA(A), TetA(B), and TetA(E), which are metal-tetracycline/H(+) antiporters that confer resistance to tetracycline by an active tetracycline efflux, which is an energy-dependent process that decreases the accumulation of the antibiotic in cells. TetA-like tetracycline resistance proteins belongs to the Eukaryotic Solute carrier 46 (SLC46)/Bacterial Tetracycline resistance (TetA) -like (SLC46/TetA-like) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.00359e-167

>CP030142.1|AXR68367.1|2171142_2172237_-|IS110-family-transposase
MKRKVYVGMDVHKETIRIANLTNNTKEIVKEQQIKHNEVQIKKFVNKLKSEWNEIHSCYEAGVTGYPLYRYLKSLGVNCILVAPGKIPRQSSDKIKTDKRDAIKLAKLLRSGELESIHVPSEEDEAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKGITYSATKYWTVSHNKWLNNLQFNNEILQETFNDYYSRVRVQEENLKAMDKRIQEIAESEPYREKVGILRCFRGVDYLTAMFLLCEVCDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFPGTGSKVVTARRSGQPALVVALAEKASLRLHKKFRNLQQRGKTPQVIITAVSRELSGFLWAAMNLTT
>CP030142.1|AXR68366.1|2170175_2170670_+|ATPase
MDLRFTVQAKIQKTLEAVFQAVYDPKHLSGYFTTGGASGPLVAGSKVVWKFADFPSMEREDEGVIVNVVEVVPNSKIVLEWDAHEGSYEGENELLTVGGYKTKTEMIFESLDQNNTLMKITESGWKVSQSALDGSYMNCQGWMNMSCCLKAYLEYGINLRKGFF
>CP030142.1|AXR68365.1|2169785_2170124_-|transcriptional-regulator
MSKLDKQDLIFKALADSKRREILDLLRKKPKTTGEICSYFEPLDRCTTIQHLKILENAGLLIIKRKGRVRWNYLDNVPIQEIYDRWISKYAKPTLERLTVFKKQMKSKNQPK
>CP030142.1|AXR68364.1|2168792_2169599_+|sterol-desaturase
MGELLSKFGYSGFFGIIWGFFLIRYLVFSGIAFLVVWVFCGKKLSHKLIQNKKPEKEKIFYEIKYSMLTFFIFGLSGIFVVWAKVNGFNRIYDNVGDYGIVYLIFSAFALILLHDTYFYWTHRMMHHKFFFKYFHLVHHKSTNPSPWAAFSFHPLEAIVESGIVPFVSFVLPLHPGVMIIFFVYMTSLNVLGHLSYEFFPSWFLKSGFTNWHNTTTHHNMHHKYFNCNYSLYFNFWDRIMGTNHEKYKEKFEEVSSRIPEKAKLILEK
>CP030142.1|AXR68363.1|2167711_2168491_+|hypothetical-protein
MRVGIFGLGYTGIRIAKRLRLQAEIQLKTFSAKTRVEGTEIFDFSNSSSLEEFGKKFSRENFDLCVVTFPVQKLSDPISFINLLFSIGKKFILLGTTSIYKRVPDIVESTPLIEDHDRFVVENEWIGRGGNILRLCGIYGPFRNPGDWARKGLVKKCSRQLNLIHGDDVALTISLLVRKIQTAGWDALPNVLNLSDNQWHTWKEIFSFLEEHEKISKTQIEESPKEDGFIDSELIRSLLPDLQTKNFWMELESLEGIGN
>CP030142.1|AXR68362.1|2166409_2167711_+|adenylosuccinate-lyase
MIDRYSNPEISKIWELENKFEIWKEIEILACEIRMKRGEIPPEDFQEIKTMAKFNVDEILEIESRVHHDVIAFLTNMNSYIGPAGRHVHYGLTSSDIGDTALCVQMVQAMDLILKKTDALISVVKEKAIQYRDLPCIGRSHGIHAEPMTLGLKFALFFEELNRNRKRMSEARDDIAVGKLSGAVGTYSNIDPEIEAYVCEKMGLKIDPISTQVVSRDRHAFYLSVLGVTASSLDRMATEIRLLQKTEGREVEEPFSAGQKGSSAMPHKRNPVICERISGLSRIIRANVNVGLQDVALWHERDISHSSAERVVLPDSTIALEYILDKMLFVVKNLHVYPDAIKRTLGVTRGLIFSQKVLLALIEKGKIVREEAYLIVQEHAMAVWANQSETLKTRLEKDERVGRVLTQKDLEDIFKIEPYLEKVGLIYKRLGLE
>CP030142.1|AXR68361.1|2164275_2165343_+|hypothetical-protein
MNKRNRFGELGSVILDFLSSPKIPNFIEFLEKGLDKELFYDPEKTKPEIPIEDLPVDYRLRESGFVRKTYERLFPVSHVFRITHRYEREYLDNFMPLSTGKYIGRGSYKFVYALPWNQVVKVGKSKLPSDPIFGSLYKHVQKNLNRYLKLEEIQLMEFLESKVWTRSSKENIRFKFARLGLERFHYWKLKSLIPDLVLPTRYFMGLRARTTPFGIPIFTLTPCDNQNLLPGKHLKEFIRLNEKIRQNPLQDAFFPKWKLNFDTHKFGVVSRSKLKKIALDFHRVIEVTKHLAEEEKLIFDIHSENIIITFPDFSLKIFDYHVFDEHLYEPSKENPSPEIDHINTIREFVRSFELG
>CP030142.1|AXR69799.1|2162462_2164265_+|ABC-transporter-substrate-binding-protein
MKIYSIFCMFFVLSVFTFLACGDKEEFETSAVVETLPWNGNLNSIPVALRGQNPIVSPHAKKGGTFRIYSHQFPKSLNYYLDQFSTTAHIFSLMFEPLLDYHPITLEPIPHLASSWKVSPDKKKFTFTIDANAFWSDGKPVTANDVLFTYETLMNKNNNTAVFRIDLSRFEKPVVLNEREIEFTQKEIHWSNFNTIANSLYILPAHYYKDRNFDKENFDFPVVSGPYSMLSAKKGRYIKMRRRGDYWMRAYPFYKGLDNFDTILFKVYNEESIAFQAFKKGDIDIYPTYTASFWVKDAIGEKFDENYILKQKIYNSKPIGFQGLVFNMRREIFSDVNVRKAFAHLVDRKLLVEKLAYNEYEETNAYYQDLWPANSFPNPPLEFDVKKARELLTKAGWKINSKGILEKDGKEFRFSILERDKKSERYLTLIQERAKEVGIIINLESTDLAEWSSRMDKYDFDMTWAAWGGGVFKDPEAMWYSKYAEEKGQPNLSGFKNVAVDKLIDQQRTEFNVSKRNEILKKIDKILTAEVPYVLLWNTSSTRIMYWNRFKAPKNPLGKFGSEREASSLWWFDEEQSSKLNDAILKKEKLSPVPGKVYFQ
>CP030142.1|AXR68360.1|2160424_2162449_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MGFVKTPVTKDMLLEGIRETLGESAYESVQKAYDVSERAHQGQFRLSGEPYIIHPLQVGFILYELGLDEKVICAGLLHDVIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKETEAAENIRKIIVATIKDIRVILIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPEEYQEVKKNINSKKSEREGFIETLKIILLQRLSEIQIEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNEVKDCYGVLGIVHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHWMYKEGKPSVSEKNVKVRWLELLSSWQDSALDPKEFVEELKYDLHEDEVFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEIITDKRTKPSPIWLRIVRTPSARQKLRSYFRKLKEENKKDLQQEAEFAAEITLNVEVLEELKKKPSSKPAKQIDLGAGKVIVAGLRGIPVRLSGCCSPLPGDGIIGFVTRGRGVSIHKKGCATAKQQEQEESMRIITVEWDYGQSESIPVLIEVKSKDRQGIFMEIVKSISNTQTNIRESKASTDQRGNLVANFEVDVEHLDQLKEILSNLKQIPDVYQAHRIKN
>CP030142.1|AXR68359.1|2159543_2160419_+|carboxylating-nicotinate-nucleotide-diphosphorylase
MKRAYTHPVSSASYQDYETLVKLAWEEDCPEEDITSVSLFTPDQKATASLNARESGILCGTGVLEVLNVFSENRIRSELLKQDAESFQKGDTLLRIQGNLIQILRIERILLNFLQYLSGISTQTGEVVQKYGQKDLMILDTRKTLPGYRKLAKYAVYCGGGSNHRLNLSEMAMVKDNHLAMYSSPREPVEKIKARFPGKIVEVEVDSLLQLEEAIGSGAEVILLDNFSLEDTKTAYSILKQKAPNVQIEFSGGITPEKLEALSEFSGAGVSMGYLTHTTRFLDLGLDIEQH
>CP030142.1|AXR69800.1|2173219_2173984_-|sphingomyelinase-C
MKMMQKIFQKEKAKRQNKSKISKYSGGYCVLLLLFFLNCMPNQQLSENSLLLSLLSLPNDQSIEMEKDRSMRKAKPKARPKRKYDGVTFISYATGKRIQANSKAPNGWLKVDASRDTYFTRFNLYQDGGDPNCIKSGPIRVETSANPKYYWNWWLRGGGGNYAYYPKYNDGSKRLTILVISGGCLKSGGKVAFRDHDILTDTHDYYITNWNGGSWNEYLFLWGEKINPGPREIFTAILSPTPPEATEQRESEVD
>CP030142.1|AXR69801.1|2174864_2175629_-|sphingomyelinase-C
MKMMQKIFQKEKAKRQNKSKISKYSGGYCVLLLLFFLNCMPNQQLSENSLLLSLLSLPNDPSIEVEKDRSMRKAEPKARPKRKYDGVTFISNATGKRIQANSKTPNGWLKVDASRDTYFTRFNLYQDGGDPNCIKSGRIRVETSANPKYYWNWWAGGGGGNYAYYPKYNDGSNRLVILVISGGCLKSGGKVAFGDHDTFGAGYDYYITNWNGGSWNEYLFLWVWTLNPGPREIFTAILSPTPPEAIEQRESEVD
>CP030142.1|AXR68368.1|2176707_2177934_+|MFS-transporter
MVGFMNPQRSAALGFIFVTVLIDVIGFGVIIPVLPKLIQELTHGSLSDAAWYGGLLMFAYSFVQFITAPFVGGLSDRYGRRPILLASLFGFTLDYLFLAFAPSIFWLFVGRVVSGIMGASFTTGYAYIADISPPEKRAQNFGILGAAFGLGFIIGPVIGGSLGQFGSRAPFLAAAVLTLVNWLFGFFVLPESLTKENRRKFEWKKANPIGSLINLKRYPMIIGLVVAFFLINTAAHAVQGTWNYYTIEKFQWNEAMVGYSLGVVGLVYAITQGGLIRIILPVLGQNRSIYLGLALNALGYALFALATQSWMMFVFLIPYCLGGIAMPPLQGIMSSQVPPREQGELQGALTSLMSVTAIIGPILMTGLFSYFTARETPIYSPEAPLWMGTILTAASLWISVGSLRKHHS
>CP030142.1|AXR68369.1|2178348_2179206_+|pirin-family-protein
MKIISAIFKDLGDNFRVRRILPSIEARHVGPFVFVDHMGPVSIQTGKELVVRSHPHIGLATITYLYDGVILHRDSIGSEMPIRPYEVNWMTAGSGIAHSERSQLDSRYSILEGIQTWVALPKEYEEVNAEFFHLDRKDIPVINGEEWELRLAAGEFLGKRSPVKVYSSLFYADLDAKPGAKGKWNIPNDQESALYVARGSLNIRGQTVGVGQIAVFLAGETIEFSSEEGSRAILLGGVPFPEHRHLWWNFVSTSLERIEKAKLEWKEEYFPKVPGETERIPLPEK
>CP030142.1|AXR68370.1|2179731_2179923_+|hypothetical-protein
MQRNLRELLHSEDRRQRRRGNAALTENILGKLLVPSVGFVVLHSNSRFSSREGGDILSKLPLL
>CP030142.1|AXR68371.1|2180359_2181244_-|hypothetical-protein
MKLHFIFYFLILISLIACNESKNKIDSDLLLSLAISTPDRAENYDRDVQIITNLSTFTNSGGVEITCQLGFAQQDIDYYIELLKKEIARYPRGYWIKAGVDKIVLCKSMTTADGRTELAFSDINLIAISVTQPMYVMRYGTTTCGGIPNFNSFECYDQPAIHHELTHSVDRKFLTFAINSLLYSDPEWEKLNSPGFQYYGSENFLQIPAGWHPLPGIMLRYGASHFVEDRAVFGAFIMGWPATYNLLVQACQTDPFVAAKVRLTVSRWKQFWPFPGAENTEWKIRMAQAERDCD
>CP030142.1|AXR68372.1|2181720_2183541_+|translational-GTPase-TypA
MEIRNIAIIAHVDHGKTTLLDGILRQTGAVTAKEDGERIMDSNDLEKEKGITIKAKNTAVVYKGTRINVVDTPGHADFGGEVERVLATADSCLLLVDAFDGPMPQTRFVLGKSLQLGHKPILVINKIDRPGARPEAVVDMAFDLFSDLGATDEQLDFPIVYASAKQGWAVYNLSESPGTNLDPLLDTVLKHVPPVQADTEAPLQFQVTSLDYNDYVGRIAVGKIYAGKMALGMNVIQLAAKKSDTATSTDTALFRITKLYNFEGLKRNEVNAAEAGDIVAIAGLPDVFIGDTICEPGKPAPRPAIEVEEPTVSMFFMVNNSPFAGKEGKFVTTRNIRERLDRELETNVAMRLEETEDKDRFKVLGRGELHLSVLIETMRREGFEIQVSRPEVILKTNEQGQKLEPYEYLVMDVPDQFTGQIIAELNRRKGELQLMDAHPSGMTRVEFVIPTRGIIGFRGFFISETRGEGVMSSRFLRFDLYKGEIPGRKNGALISMDSGESTAYALWKIQERGELVIGPNTAVYPGMIIGIHSRENDLEVNPVKEKKLSNVRSSGADEAIRLVPPRRFSLEQNIEFLDDDELLEVTPASLRLRKKFLDAVMRKRNK
>CP030142.1|AXR68373.1|2184140_2185355_+|acyltransferase
MKAFIKDLWFHRDNEIQSLNGLRAFAIILVILNHYALAWKKIGTLQSDSLFWSGVDLSFVLSGFLISKGLLSDWTRNGAINFQKFYLKRTFRIFPAYYFFITFSLIASSFVLKIAEEKGLEQEAYVLSFKLSNAWGDFVFLGNYFPGMNIHTWSLSIEEQFYLIFPLFCSLLLFKVNPKHRQLFLWCLLLIPTVSRVIVYITTTVPLTPEYFNEIYFPFHTRFDSLVMGVIAMDLYVGHKDLVSRLKTDNRLYYPLLFLFFFFLCMAHWVNLRTDSFFTHTFKYNLLNIGFAGILLLAVVRSEGLLSRFLSLKLFVPVARLSFTIYLWHLILIGISLSILKIRTEPSSTLMLLSQFIFVLVLVVLLSIPFYALIEYPFQYLKTKILLKKRSSEKPLQVQSESSI
>CP030142.1|AXR68374.1|2185542_2186478_-|hypothetical-protein
MRIKIGYILILLYSILFIGCGKNLRGKPTPPNPDLAGFYLSSETAEWTKDGKMKIEVLSIFPKSNGDLSFERKTIVRLSFITSDNREEWRIRTGGVVTSENEILLQEALYQEFHQPHMGARESDPKRWKLSEMGAASKVREIGNVTLSGNLLGEISPDNKTLKFSKITFTKIGDSFQGRITTHVNQKSITIDNEIAGVVFYKAAVSTAEQIVSVFSRSELIKPGMIFLVGKDQVPCKIVEVFQHSGVLEPVENGKILSVSVGDPVILKGNIDTKAINKRATADELIRKLKSDPNVSKEELIREIEKLKNVR
>CP030142.1|AXR68375.1|2187178_2187817_-|hypothetical-protein
MKTITKKNDPKHLAEDEISYYYSLLQEELTEFDCGELCKPDNDGIPFCCIAENAVPTLYRSEFSMLKKRTDLWKVWSPETDKKMLSEYDSKETLFCECKGIQFCERENRSISCRTFPLEPYLDTRGVLVGLVFMKEFTGKCPLTLRAKDIRQEFIDSHFIFWEKLLFRLDSEYEIFWNSSKSYRRSRAKTGKRFPIFFPSHLQGKEYLEQYL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP030142_1	1.16\|359398\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	359398-359429	32	CP030142.1	3650816-3650847	0	1.0

1. spacer 1.16|359398|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to position: 3650816-3650847, mismatch: 0, identity: 1.0

ttatagcggatgcgtattacgtttatttattt	CRISPR spacer
ttatagcggatgcgtattacgtttatttattt	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030142_2	2.3\|597125\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597125-597156	32	NZ_CP030149	Leptospira mayottensis strain MDI272 plasmid p_Lmay_MDI272_tenre, complete sequence	26261-26292	0	1.0
CP030142_2	2.6\|597308\|32\|CP030142\|CRISPRCasFinder,CRT	597308-597339	32	NZ_CP024873	Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence	22306-22337	0	1.0
CP030142_3	3.6\|1806114\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	1806114-1806145	32	MF974398	Leptospira mayottensis 200901116 plasmid p2_L200901116, complete sequence	261-292	0	1.0
CP030142_3	3.6\|1806114\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	1806114-1806145	32	NZ_CP030149	Leptospira mayottensis strain MDI272 plasmid p_Lmay_MDI272_tenre, complete sequence	10577-10608	0	1.0
CP030142_3	3.6\|1806114\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	1806114-1806145	32	NZ_CP030149	Leptospira mayottensis strain MDI272 plasmid p_Lmay_MDI272_tenre, complete sequence	47412-47443	0	1.0
CP030142_4	4.2\|2172506\|31\|CP030142\|CRISPRCasFinder	2172506-2172536	31	MF974398	Leptospira mayottensis 200901116 plasmid p2_L200901116, complete sequence	40799-40829	0	1.0
CP030142_4	4.2\|2172506\|31\|CP030142\|CRISPRCasFinder	2172506-2172536	31	NZ_CP030149	Leptospira mayottensis strain MDI272 plasmid p_Lmay_MDI272_tenre, complete sequence	34669-34699	0	1.0
CP030142_1	1.2\|358544\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	358544-358575	32	MF974398	Leptospira mayottensis 200901116 plasmid p2_L200901116, complete sequence	13491-13522	1	0.969
CP030142_1	1.3\|358605\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	358605-358636	32	MF974398	Leptospira mayottensis 200901116 plasmid p2_L200901116, complete sequence	13491-13522	1	0.969
CP030142_1	1.4\|358666\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	358666-358697	32	MF974398	Leptospira mayottensis 200901116 plasmid p2_L200901116, complete sequence	13491-13522	1	0.969
CP030142_2	2.5\|597247\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597247-597278	32	NZ_CP024873	Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence	93196-93227	1	0.969
CP030142_2	2.5\|597247\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597247-597278	32	KF114877	Leptospira phage LnoZ_CZ214, complete genome	61489-61520	1	0.969
CP030142_1	1.14\|359276\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	359276-359307	32	NZ_CP006727	Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence	25541-25572	2	0.938
CP030142_2	2.6\|597308\|32\|CP030142\|CRISPRCasFinder,CRT	597308-597339	32	KF114877	Leptospira phage LnoZ_CZ214, complete genome	37745-37776	2	0.938
CP030142_3	3.1\|1805810\|31\|CP030142\|CRISPRCasFinder,CRT	1805810-1805840	31	KF114877	Leptospira phage LnoZ_CZ214, complete genome	23803-23833	2	0.935
CP030142_3	3.10\|1806359\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	1806359-1806390	32	MF974398	Leptospira mayottensis 200901116 plasmid p2_L200901116, complete sequence	22758-22789	2	0.938
CP030142_2	2.3\|597125\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597125-597156	32	MF974398	Leptospira mayottensis 200901116 plasmid p2_L200901116, complete sequence	32397-32428	3	0.906
CP030142_3	3.5\|1806053\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	1806053-1806084	32	MF974398	Leptospira mayottensis 200901116 plasmid p2_L200901116, complete sequence	13879-13910	3	0.906
CP030142_1	1.18\|359521\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	359521-359552	32	MG969411	UNVERIFIED: Salmonella phage GE_vB_MG, complete genome	12693-12724	6	0.812
CP030142_1	1.18\|359521\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	359521-359552	32	MG969411	UNVERIFIED: Salmonella phage GE_vB_MG, complete genome	152361-152392	6	0.812
CP030142_1	1.18\|359521\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	359521-359552	32	GU070616	Salmonella phage PVP-SE1, complete genome	78208-78239	6	0.812
CP030142_1	1.18\|359521\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	359521-359552	32	JX181824	Salmonella phage SSE-121, complete genome	136616-136647	6	0.812
CP030142_3	3.4\|1805992\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	1805992-1806023	32	MN850573	Escherichia phage muut, complete genome	10910-10941	7	0.781
CP030142_1	1.5\|358727\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	358727-358758	32	NZ_CP045134	Acinetobacter indicus strain TQ18 plasmid p18TQ-13k, complete sequence	2755-2786	8	0.75
CP030142_1	1.5\|358727\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	358727-358758	32	NZ_CP045123	Acinetobacter indicus strain XG03 plasmid pXG-13k, complete sequence	10697-10728	8	0.75
CP030142_1	1.7\|358849\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	358849-358880	32	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	833952-833983	8	0.75
CP030142_1	1.12\|359154\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	359154-359185	32	MH319728	Marine virus AG-345-D19 Ga0172267_109 genomic sequence	1891-1922	8	0.75
CP030142_1	1.16\|359398\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	359398-359429	32	NZ_CP010108	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-2, complete sequence	47258-47289	8	0.75
CP030142_2	2.2\|597064\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597064-597095	32	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	616009-616040	8	0.75
CP030142_2	2.2\|597064\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597064-597095	32	NZ_CP021128	Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence	566039-566070	8	0.75
CP030142_2	2.2\|597064\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597064-597095	32	CP007645	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence	624455-624486	8	0.75
CP030142_2	2.2\|597064\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597064-597095	32	KU686194	Synechococcus phage S-CAM1 isolate 0809CC03, complete genome	50739-50770	8	0.75
CP030142_2	2.2\|597064\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597064-597095	32	KU686192	Synechococcus phage S-CAM1 isolate 0309SB33, complete genome	50739-50770	8	0.75
CP030142_2	2.2\|597064\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597064-597095	32	NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	591737-591768	8	0.75
CP030142_2	2.2\|597064\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597064-597095	32	NZ_CP050100	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b3, complete sequence	251299-251330	8	0.75
CP030142_2	2.2\|597064\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597064-597095	32	NZ_CP049733	Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence	579423-579454	8	0.75
CP030142_2	2.2\|597064\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597064-597095	32	NZ_CP053443	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eC, complete sequence	214083-214114	8	0.75
CP030142_2	2.2\|597064\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597064-597095	32	NZ_CP031226	Pseudomonas amygdali pv. lachrymans str. M301315 plasmid pMPPla107, complete sequence	676410-676441	8	0.75
CP030142_2	2.2\|597064\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597064-597095	32	NZ_CP053207	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence	608601-608632	8	0.75
CP030142_2	2.5\|597247\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597247-597278	32	KU599889	Flavobacterium phage 1H, complete genome	5777-5808	8	0.75
CP030142_3	3.4\|1805992\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	1805992-1806023	32	MH675927	Escherichia phage vB_vPM_PD114, complete genome	52291-52322	8	0.75
CP030142_3	3.4\|1805992\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	1805992-1806023	32	MH816848	Escherichia phage vB_vPM_PD06, complete genome	97569-97600	8	0.75
CP030142_3	3.10\|1806359\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	1806359-1806390	32	AP014297	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S28-C24, * SEQUENCING IN PROGRESS *	23197-23228	8	0.75
CP030142_1	1.7\|358849\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	358849-358880	32	NC_007411	Trichormus variabilis ATCC 29413 plasmid B, complete sequence	5795-5826	9	0.719
CP030142_1	1.7\|358849\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	358849-358880	32	NZ_CP047245	Trichormus variabilis 0441 plasmid unnamed3, complete sequence	2337-2368	9	0.719
CP030142_1	1.14\|359276\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	359276-359307	32	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	333680-333711	9	0.719
CP030142_2	2.2\|597064\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597064-597095	32	NZ_CP048284	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248b, complete sequence	241448-241479	9	0.719
CP030142_2	2.2\|597064\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597064-597095	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	90634-90665	9	0.719
CP030142_2	2.6\|597308\|32\|CP030142\|CRISPRCasFinder,CRT	597308-597339	32	KF114879	Leptospira phage LbrZ_5399, complete genome	15742-15773	9	0.719
CP030142_2	2.6\|597308\|32\|CP030142\|CRISPRCasFinder,CRT	597308-597339	32	KF114880	Leptospira phage LinZ_10, complete genome	15275-15306	9	0.719
CP030142_2	2.6\|597308\|32\|CP030142\|CRISPRCasFinder,CRT	597308-597339	32	KX656785	UNVERIFIED: Leptospira phage Lin_34, complete genome	5086-5117	9	0.719
CP030142_3	3.3\|1805931\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	1805931-1805962	32	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	1294318-1294349	9	0.719
CP030142_1	1.1\|358483\|32\|CP030142\|CRISPRCasFinder,CRT	358483-358514	32	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	184866-184897	10	0.688
CP030142_2	2.5\|597247\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597247-597278	32	LR214957	Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 3	11749-11780	10	0.688
CP030142_2	2.5\|597247\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	597247-597278	32	NZ_LR215006	Mycoplasma conjunctivae strain NCTC10147 plasmid 10	10201-10232	10	0.688
CP030142_3	3.4\|1805992\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	1805992-1806023	32	NZ_CP009649	Bacillus pseudomycoides strain BTZ plasmid pBTZ_2, complete sequence	80955-80986	10	0.688
CP030142_4	4.1\|2172445\|32\|CP030142\|CRISPRCasFinder	2172445-2172476	32	NC_011987	Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence	190816-190847	10	0.688
CP030142_3	3.10\|1806359\|32\|CP030142\|CRISPRCasFinder,CRT,PILER-CR	1806359-1806390	32	NC_010821	Pseudomonas phage 201phi2-1, complete genome	165212-165243	11	0.656

1. spacer 2.3|597125|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030149 (Leptospira mayottensis strain MDI272 plasmid p_Lmay_MDI272_tenre, complete sequence) position: , mismatch: 0, identity: 1.0

aatgtgacccggagccactgcaacttttttat	CRISPR spacer
aatgtgacccggagccactgcaacttttttat	Protospacer
********************************

2. spacer 2.6|597308|32|CP030142|CRISPRCasFinder,CRT matches to NZ_CP024873 (Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence) position: , mismatch: 0, identity: 1.0

gagcagagtggcttgcgatctatgatcataac	CRISPR spacer
gagcagagtggcttgcgatctatgatcataac	Protospacer
********************************

3. spacer 3.6|1806114|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to MF974398 (Leptospira mayottensis 200901116 plasmid p2_L200901116, complete sequence) position: , mismatch: 0, identity: 1.0

ctggcgattgaaacaggaatcccacggtcaaa	CRISPR spacer
ctggcgattgaaacaggaatcccacggtcaaa	Protospacer
********************************

4. spacer 3.6|1806114|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030149 (Leptospira mayottensis strain MDI272 plasmid p_Lmay_MDI272_tenre, complete sequence) position: , mismatch: 0, identity: 1.0

ctggcgattgaaacaggaatcccacggtcaaa	CRISPR spacer
ctggcgattgaaacaggaatcccacggtcaaa	Protospacer
********************************

5. spacer 3.6|1806114|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030149 (Leptospira mayottensis strain MDI272 plasmid p_Lmay_MDI272_tenre, complete sequence) position: , mismatch: 0, identity: 1.0

ctggcgattgaaacaggaatcccacggtcaaa	CRISPR spacer
ctggcgattgaaacaggaatcccacggtcaaa	Protospacer
********************************

6. spacer 4.2|2172506|31|CP030142|CRISPRCasFinder matches to MF974398 (Leptospira mayottensis 200901116 plasmid p2_L200901116, complete sequence) position: , mismatch: 0, identity: 1.0

tccacagccatccaattgtagttcctaggcc	CRISPR spacer
tccacagccatccaattgtagttcctaggcc	Protospacer
*******************************

7. spacer 4.2|2172506|31|CP030142|CRISPRCasFinder matches to NZ_CP030149 (Leptospira mayottensis strain MDI272 plasmid p_Lmay_MDI272_tenre, complete sequence) position: , mismatch: 0, identity: 1.0

tccacagccatccaattgtagttcctaggcc	CRISPR spacer
tccacagccatccaattgtagttcctaggcc	Protospacer
*******************************

8. spacer 1.2|358544|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to MF974398 (Leptospira mayottensis 200901116 plasmid p2_L200901116, complete sequence) position: , mismatch: 1, identity: 0.969

caatcgcagaactcggctggggtattgagggc	CRISPR spacer
caatcgcagaactcggctggggtatcgagggc	Protospacer
*************************.******

9. spacer 1.3|358605|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to MF974398 (Leptospira mayottensis 200901116 plasmid p2_L200901116, complete sequence) position: , mismatch: 1, identity: 0.969

caatcgcagaactcggctggggtattgagggc	CRISPR spacer
caatcgcagaactcggctggggtatcgagggc	Protospacer
*************************.******

10. spacer 1.4|358666|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to MF974398 (Leptospira mayottensis 200901116 plasmid p2_L200901116, complete sequence) position: , mismatch: 1, identity: 0.969

caatcgcagaactcggctggggtattgagggc	CRISPR spacer
caatcgcagaactcggctggggtatcgagggc	Protospacer
*************************.******

11. spacer 2.5|597247|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024873 (Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence) position: , mismatch: 1, identity: 0.969

catttcttttgtataccctgcctcttcttcca	CRISPR spacer
catttcttttgtataccctccctcttcttcca	Protospacer
******************* ************

12. spacer 2.5|597247|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to KF114877 (Leptospira phage LnoZ_CZ214, complete genome) position: , mismatch: 1, identity: 0.969

catttcttttgtataccctgcctcttcttcca	CRISPR spacer
catttcttttgtataccctgcctcttctacca	Protospacer
**************************** ***

13. spacer 1.14|359276|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006727 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence) position: , mismatch: 2, identity: 0.938

tgaccttcgccacctttttcctcttccatagc	CRISPR spacer
tgaccttcgccacctttgtcctcttccataac	Protospacer
***************** ************.*

14. spacer 2.6|597308|32|CP030142|CRISPRCasFinder,CRT matches to KF114877 (Leptospira phage LnoZ_CZ214, complete genome) position: , mismatch: 2, identity: 0.938

gagcagagtggcttgcgatctatgatcataac	CRISPR spacer
gtgcagagtggcttgcaatctatgatcataac	Protospacer
* **************.***************

15. spacer 3.1|1805810|31|CP030142|CRISPRCasFinder,CRT matches to KF114877 (Leptospira phage LnoZ_CZ214, complete genome) position: , mismatch: 2, identity: 0.935

ttagttccgaacgaatactttctaaagtttt	CRISPR spacer
ttagttccgaacgaatgttttctaaagtttt	Protospacer
****************..*************

16. spacer 3.10|1806359|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to MF974398 (Leptospira mayottensis 200901116 plasmid p2_L200901116, complete sequence) position: , mismatch: 2, identity: 0.938

ttttaaaatgcaaaatcctgagttatgtttct	CRISPR spacer
ttttaaaatgcaaaatcctgagttgtgtttcg	Protospacer
************************.******

17. spacer 2.3|597125|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to MF974398 (Leptospira mayottensis 200901116 plasmid p2_L200901116, complete sequence) position: , mismatch: 3, identity: 0.906

aatgtgacccggagccactgcaacttttttat	CRISPR spacer
aatgtgacccggagccactgcaactttttata	Protospacer
*****************************

18. spacer 3.5|1806053|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to MF974398 (Leptospira mayottensis 200901116 plasmid p2_L200901116, complete sequence) position: , mismatch: 3, identity: 0.906

tgggttttctgattttattgtgatcgcccttt	CRISPR spacer
tgggttttctgattttattgtgatcgattttt	Protospacer
************************** ..***

19. spacer 1.18|359521|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to MG969411 (UNVERIFIED: Salmonella phage GE_vB_MG, complete genome) position: , mismatch: 6, identity: 0.812

ttttaacagacgaaacgaattgattgatatta-	CRISPR spacer
tcttaacagatgaaaagaattgatt-acattct	Protospacer
*.********.**** ********* *.***

20. spacer 1.18|359521|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to MG969411 (UNVERIFIED: Salmonella phage GE_vB_MG, complete genome) position: , mismatch: 6, identity: 0.812

ttttaacagacgaaacgaattgattgatatta-	CRISPR spacer
tcttaacagatgaaaagaattgatt-acattct	Protospacer
*.********.**** ********* *.***

21. spacer 1.18|359521|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to GU070616 (Salmonella phage PVP-SE1, complete genome) position: , mismatch: 6, identity: 0.812

ttttaacagacgaaacgaattgattgatatta-	CRISPR spacer
tcttaacagatgaaaagaattgatt-acattct	Protospacer
*.********.**** ********* *.***

22. spacer 1.18|359521|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to JX181824 (Salmonella phage SSE-121, complete genome) position: , mismatch: 6, identity: 0.812

ttttaacagacgaaacgaattgattgatatta-	CRISPR spacer
tcttaacagatgaaaagaattgatt-acattct	Protospacer
*.********.**** ********* *.***

23. spacer 3.4|1805992|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to MN850573 (Escherichia phage muut, complete genome) position: , mismatch: 7, identity: 0.781

tcacagtaactataatcaaaaacggaaaaaaa	CRISPR spacer
tcacagtaactataacaaaaaactaagtaaat	Protospacer
***************. ****** .*. ***

24. spacer 1.5|358727|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045134 (Acinetobacter indicus strain TQ18 plasmid p18TQ-13k, complete sequence) position: , mismatch: 8, identity: 0.75

cgacaaaacttaatttgattctaccgctttat--	CRISPR spacer
cgaacaaacttaatttgattcta--gatcgagcg	Protospacer
***  ******************  * *. *

25. spacer 1.5|358727|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045123 (Acinetobacter indicus strain XG03 plasmid pXG-13k, complete sequence) position: , mismatch: 8, identity: 0.75

cgacaaaacttaatttgattctaccgctttat--	CRISPR spacer
cgaacaaacttaatttgattcta--gatcgagcg	Protospacer
***  ******************  * *. *

26. spacer 1.7|358849|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 8, identity: 0.75

taaaatagaggtaccaatcaaaactggatcaa	CRISPR spacer
caaggtagaagtaccaagcaaaactggaaccc	Protospacer
.**..****.******* ********** *

27. spacer 1.12|359154|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to MH319728 (Marine virus AG-345-D19 Ga0172267_109 genomic sequence) position: , mismatch: 8, identity: 0.75

ttttacagtcgatcctatgcgatcatataatt-	CRISPR spacer
acttacagtcgatcctatgccagca-gtgcttg	Protospacer
 .****************** * ** .*. **

28. spacer 1.16|359398|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010108 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-2, complete sequence) position: , mismatch: 8, identity: 0.75

ttatagcggatgcgtattacgtttatttattt	CRISPR spacer
tcttactggatgtgtattatgtttatttatca	Protospacer
*. ** .*****.******.**********.

29. spacer 2.2|597064|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 8, identity: 0.75

atcgacatcgttcgcgatctttcactctggga	CRISPR spacer
gtcgacatcgttcgcggcctttcacgcgccgg	Protospacer
.***************..******* *   *.

30. spacer 2.2|597064|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 8, identity: 0.75

atcgacatcgttcgcgatctttcactctggga	CRISPR spacer
gtcgacatcgttcgcggcctttcacgcgccgg	Protospacer
.***************..******* *   *.

31. spacer 2.2|597064|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 8, identity: 0.75

atcgacatcgttcgcgatctttcactctggga	CRISPR spacer
gtcgacatcgttcgcggcctttcacgcgccgg	Protospacer
.***************..******* *   *.

32. spacer 2.2|597064|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to KU686194 (Synechococcus phage S-CAM1 isolate 0809CC03, complete genome) position: , mismatch: 8, identity: 0.75

atcgacatcgttcgcgatctttcactctggga	CRISPR spacer
gtctgtatggttcgcgatgtttcactctggtg	Protospacer
.** ..** ********* *********** .

33. spacer 2.2|597064|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to KU686192 (Synechococcus phage S-CAM1 isolate 0309SB33, complete genome) position: , mismatch: 8, identity: 0.75

atcgacatcgttcgcgatctttcactctggga	CRISPR spacer
gtctgtatggttcgcgatgtttcactctggtg	Protospacer
.** ..** ********* *********** .

34. spacer 2.2|597064|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050083 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence) position: , mismatch: 8, identity: 0.75

atcgacatcgttcgcgatcttt----cactctggga	CRISPR spacer
atcgacatcggtctcgatctttcgtccgccct----	Protospacer
********** ** ********    *.*.**

35. spacer 2.2|597064|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050100 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b3, complete sequence) position: , mismatch: 8, identity: 0.75

atcgacatcgttcgcgatcttt----cactctggga	CRISPR spacer
atcgacatcggtctcgatctttcgtccgccct----	Protospacer
********** ** ********    *.*.**

36. spacer 2.2|597064|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049733 (Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence) position: , mismatch: 8, identity: 0.75

atcgacatcgttcgcgatcttt----cactctggga	CRISPR spacer
atcgacatcggtctcgatctttcgtccgccct----	Protospacer
********** ** ********    *.*.**

37. spacer 2.2|597064|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053443 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eC, complete sequence) position: , mismatch: 8, identity: 0.75

atcgacatcgttcgcgatcttt----cactctggga	CRISPR spacer
atcgacatcggtctcgatctttcgtccgccct----	Protospacer
********** ** ********    *.*.**

38. spacer 2.2|597064|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031226 (Pseudomonas amygdali pv. lachrymans str. M301315 plasmid pMPPla107, complete sequence) position: , mismatch: 8, identity: 0.75

atcgacatcgttcgcgatctttcactctggga	CRISPR spacer
atcgaaatcgttcgcgatctctcccccacgcc	Protospacer
***** **************.** *.*  *

39. spacer 2.2|597064|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053207 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence) position: , mismatch: 8, identity: 0.75

atcgacatcgttcgcgatcttt----cactctggga	CRISPR spacer
atcgacatcggtctcgatctttcgtccgccct----	Protospacer
********** ** ********    *.*.**

40. spacer 2.5|597247|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to KU599889 (Flavobacterium phage 1H, complete genome) position: , mismatch: 8, identity: 0.75

catttcttttgtataccctgcctcttcttcca	CRISPR spacer
taattctttttcataccctgcctcttttactg	Protospacer
.* ******* .**************.* *..

41. spacer 3.4|1805992|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to MH675927 (Escherichia phage vB_vPM_PD114, complete genome) position: , mismatch: 8, identity: 0.75

tcacagtaactataatcaaaaacggaaaaaaa	CRISPR spacer
tcacagtaactataacaaaaaactaagtgaat	Protospacer
***************. ****** .*. .**

42. spacer 3.4|1805992|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to MH816848 (Escherichia phage vB_vPM_PD06, complete genome) position: , mismatch: 8, identity: 0.75

tcacagtaactataatcaaaaacggaaaaaaa	CRISPR spacer
tcacagtaactataacaaaaaactaagtgaat	Protospacer
***************. ****** .*. .**

43. spacer 3.10|1806359|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to AP014297 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S28-C24, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

ttttaaaatgcaaaatcctgagttatgtttct	CRISPR spacer
tattaaaagtcaaaatcctgagttagatattc	Protospacer
* ******  *************** .* *..

44. spacer 1.7|358849|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NC_007411 (Trichormus variabilis ATCC 29413 plasmid B, complete sequence) position: , mismatch: 9, identity: 0.719

taaaatagaggtaccaatcaaaactggatcaa	CRISPR spacer
atcaatagagctaccaattaaaactggttttg	Protospacer
   ******* *******.******** *. .

45. spacer 1.7|358849|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047245 (Trichormus variabilis 0441 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

taaaatagaggtaccaatcaaaactggatcaa	CRISPR spacer
atcaatagagctaccaattaaaactggttttg	Protospacer
   ******* *******.******** *. .

46. spacer 1.14|359276|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

tgaccttcgccacctttttcctcttccatagc	CRISPR spacer
tgaccttcgccaccttcttcttcggcggcgga	Protospacer
****************.***.**  * ...*

47. spacer 2.2|597064|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048284 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248b, complete sequence) position: , mismatch: 9, identity: 0.719

atcgacatcgttcgcgatctttcactctggga	CRISPR spacer
atcgacatcggtctcgatctttcgcccgccct	Protospacer
********** ** *********.*.*

48. spacer 2.2|597064|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 9, identity: 0.719

atcgacatcgttcgcgatctttcactctggga	CRISPR spacer
atcgacatcggtctcgatctttcgcccgccct	Protospacer
********** ** *********.*.*

49. spacer 2.6|597308|32|CP030142|CRISPRCasFinder,CRT matches to KF114879 (Leptospira phage LbrZ_5399, complete genome) position: , mismatch: 9, identity: 0.719

gagcagagtggcttgcgatctatgatcataac	CRISPR spacer
gagcaaagtggctagcgatctataacgaacgg	Protospacer
*****.******* *********.*. *  .

50. spacer 2.6|597308|32|CP030142|CRISPRCasFinder,CRT matches to KF114880 (Leptospira phage LinZ_10, complete genome) position: , mismatch: 9, identity: 0.719

gagcagagtggcttgcgatctatgatcataac	CRISPR spacer
gagcaaagtggctagcgatctataacgaacgg	Protospacer
*****.******* *********.*. *  .

51. spacer 2.6|597308|32|CP030142|CRISPRCasFinder,CRT matches to KX656785 (UNVERIFIED: Leptospira phage Lin_34, complete genome) position: , mismatch: 9, identity: 0.719

gagcagagtggcttgcgatctatgatcataac	CRISPR spacer
gagcaaagtggctagcgatctataacgaacgg	Protospacer
*****.******* *********.*. *  .

52. spacer 3.3|1805931|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 9, identity: 0.719

cgatttcgcgagcataaggaggaaaacccgac	CRISPR spacer
cccgatcgcgagcataagcaggagaaccgatc	Protospacer
*    ************* ****.**** . *

53. spacer 1.1|358483|32|CP030142|CRISPRCasFinder,CRT matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 10, identity: 0.688

aaattattaatcttcacaaaggggccgaaaca	CRISPR spacer
acggcgagaatcttcacaaagtcgccgaaact	Protospacer
* . ..  *************  ********

54. spacer 2.5|597247|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to LR214957 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 3) position: , mismatch: 10, identity: 0.688

catttcttttgtataccctgcctcttcttcca	CRISPR spacer
tgctagttttctataccctgcttcttcttgtt	Protospacer
...*  **** **********.******* .

55. spacer 2.5|597247|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR215006 (Mycoplasma conjunctivae strain NCTC10147 plasmid 10) position: , mismatch: 10, identity: 0.688

catttcttttgtataccctgcctcttcttcca	CRISPR spacer
tgctagttttctataccctgcttcttcttgtt	Protospacer
...*  **** **********.******* .

56. spacer 3.4|1805992|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009649 (Bacillus pseudomycoides strain BTZ plasmid pBTZ_2, complete sequence) position: , mismatch: 10, identity: 0.688

tcacagtaactataatcaaaaacggaaaaaaa	CRISPR spacer
ctttttcatctataatcaaaaaaggaataaaa	Protospacer
.. .  .* ************* **** ****

57. spacer 4.1|2172445|32|CP030142|CRISPRCasFinder matches to NC_011987 (Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence) position: , mismatch: 10, identity: 0.688

ttatttgatcggtgaaatcggaatattgtagg	CRISPR spacer
cgcagcgatcggtgaaatcggaatggtgtggt	Protospacer
.    .******************. ***.*

58. spacer 3.10|1806359|32|CP030142|CRISPRCasFinder,CRT,PILER-CR matches to NC_010821 (Pseudomonas phage 201phi2-1, complete genome) position: , mismatch: 11, identity: 0.656

ttttaaaatgcaaaatcctgagttatgtttct	CRISPR spacer
gattaaaatgcataaacctgagttagagaaag	Protospacer
  ********** ** ********* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

99172 : 175472

Tupanvirus(28.57%)

transposase,protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR66733.1\|99172_101917_-\|tRNA	isoleucine--tRNA ligase	A0A2K9L9X8	Tupanvirus	1.6e-90	27.6
AXR66734.1\|101924_102584_-	hypothetical protein	NA	NA	NA	NA
AXR66735.1\|102580_104818_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.4e-145	40.7
AXR66736.1\|104967_105168_-	hypothetical protein	NA	NA	NA	NA
AXR66737.1\|105123_106296_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
AXR66738.1\|106308_107184_+	succinate--CoA ligase subunit alpha	NA	NA	NA	NA
AXR66739.1\|107396_108971_+	TolC family protein	NA	NA	NA	NA
AXR69622.1\|108982_110419_+	hypothetical protein	NA	NA	NA	NA
AXR66740.1\|110456_110690_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
AXR66741.1\|110702_111551_+	LpxI family protein	NA	NA	NA	NA
AXR66742.1\|111603_112806_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
AXR66743.1\|113146_114526_-	DNA repair protein RadA	NA	NA	NA	NA
AXR66744.1\|114522_115161_-	ribonuclease D	NA	NA	NA	NA
AXR66745.1\|115284_117225_+	alpha-galactosidase	NA	NA	NA	NA
AXR69623.1\|117286_117772_+	putative lipoprotein	NA	NA	NA	NA
AXR66746.1\|117855_119610_+	hypothetical protein	NA	NA	NA	NA
AXR66747.1\|119740_120850_-	response regulator	NA	NA	NA	NA
AXR66748.1\|120851_121667_-	hypothetical protein	NA	NA	NA	NA
AXR66749.1\|121669_122575_-	histone deacetylase	NA	NA	NA	NA
AXR66750.1\|122678_124106_+	pyruvate kinase	NA	NA	NA	NA
AXR66751.1\|124731_125703_+	diguanylate cyclase	NA	NA	NA	NA
AXR66752.1\|125909_126944_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.0e-70	44.2
AXR69624.1\|127063_127654_-	iron dicitrate transport regulator FecR	NA	NA	NA	NA
AXR66753.1\|128077_128854_-	glutamate racemase	NA	NA	NA	NA
AXR66754.1\|128880_130185_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
AXR66755.1\|130221_131328_-\|protease	serine protease	W5SAB9	Pithovirus	2.7e-12	33.0
AXR66756.1\|131326_132424_+	aminopeptidase	NA	NA	NA	NA
AXR66757.1\|132515_140279_-	biopolymer transporter TolR	NA	NA	NA	NA
AXR66758.1\|140282_140894_-	DUF1318 domain-containing protein	NA	NA	NA	NA
AXR66759.1\|140907_143898_-	hypothetical protein	NA	NA	NA	NA
AXR66760.1\|143912_144254_-	anti-sigma factor antagonist	NA	NA	NA	NA
AXR66761.1\|144444_145443_+	glycosyltransferase	A8CG95	Salmonella_phage	8.8e-55	36.5
AXR66762.1\|145477_147445_+	hypothetical protein	NA	NA	NA	NA
AXR66763.1\|148062_149157_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AXR66764.1\|149473_149878_-	hypothetical protein	NA	NA	NA	NA
AXR69625.1\|149847_152049_-	hypothetical protein	NA	NA	NA	NA
AXR66765.1\|152075_152726_-	hypothetical protein	NA	NA	NA	NA
AXR66766.1\|152728_154753_-	damage-inducible protein	A7KV33	Bacillus_phage	3.0e-102	33.7
AXR69626.1\|155312_155891_+	NUDIX hydrolase	NA	NA	NA	NA
AXR66767.1\|155892_157149_+	MFS transporter	NA	NA	NA	NA
AXR66768.1\|157609_160225_+	aminopeptidase N	A0A2K9L1R3	Tupanvirus	1.5e-45	31.1
AXR66769.1\|160582_162658_-	hypothetical protein	NA	NA	NA	NA
AXR69627.1\|162748_164422_+	TolC family protein	NA	NA	NA	NA
AXR66770.1\|164572_165667_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AXR66771.1\|166488_167112_-	hypothetical protein	NA	NA	NA	NA
AXR66772.1\|167168_168374_-	metallophosphoesterase	NA	NA	NA	NA
AXR69628.1\|168525_170283_+	serine/threonine protein phosphatase	NA	NA	NA	NA
AXR66773.1\|170978_172049_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AXR66774.1\|172408_172600_-	hypothetical protein	NA	NA	NA	NA
AXR66775.1\|172659_172944_+	hypothetical protein	NA	NA	NA	NA
AXR66776.1\|173292_174363_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AXR66777.1\|174663_175472_-\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1986693 : 2017875

uncultured_virus(33.33%)

integrase,terminase,plate,tail,transposase

attL 1978553:1978567|attR 2018106:2018120

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1978553:1978567	attL	NA	NA	NA	NA
AXR68222.1\|1986693_1987923_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.9e-53	49.7
AXR69783.1\|1987987_1988281_-	hypothetical protein	NA	NA	NA	NA
AXR68223.1\|1988308_1988692_-	hypothetical protein	NA	NA	NA	NA
AXR68224.1\|1988857_1989583_-	hypothetical protein	A0A0U4JEJ6	Pseudomonas_phage	5.6e-11	33.8
AXR68225.1\|1989582_1990974_-	hypothetical protein	NA	NA	NA	NA
AXR68226.1\|1990983_1991682_-	hypothetical protein	NA	NA	NA	NA
AXR68227.1\|1991678_1992803_-\|plate	phage baseplate protein	NA	NA	NA	NA
AXR68228.1\|1992799_1993159_-	hypothetical protein	NA	NA	NA	NA
AXR68229.1\|1993266_1993953_-	hypothetical protein	NA	NA	NA	NA
AXR68230.1\|1993949_1994909_-	late control protein	NA	NA	NA	NA
AXR68231.1\|1994899_1995301_-\|tail	phage tail protein	NA	NA	NA	NA
AXR68232.1\|1995297_1995750_-	hypothetical protein	NA	NA	NA	NA
AXR68233.1\|1995749_1998053_-\|tail	phage tail tape measure protein	H7BVM4	unidentified_phage	5.7e-33	29.4
AXR68234.1\|1998060_1998285_-	hypothetical protein	NA	NA	NA	NA
AXR68235.1\|1998537_1998951_-	hypothetical protein	NA	NA	NA	NA
AXR68236.1\|1998975_1999410_-	hypothetical protein	NA	NA	NA	NA
AXR68237.1\|1999426_2000920_-	hypothetical protein	NA	NA	NA	NA
AXR68238.1\|2000922_2001339_-	hypothetical protein	NA	NA	NA	NA
AXR68239.1\|2001340_2001910_-	hypothetical protein	NA	NA	NA	NA
AXR68240.1\|2001906_2002353_-	phage morphogenesis protein	NA	NA	NA	NA
AXR68241.1\|2002349_2002742_-	hypothetical protein	NA	NA	NA	NA
AXR68242.1\|2002738_2003158_-	hypothetical protein	NA	NA	NA	NA
AXR68243.1\|2003173_2004256_-	hypothetical protein	NA	NA	NA	NA
AXR68244.1\|2004268_2004643_-	hypothetical protein	NA	NA	NA	NA
AXR68245.1\|2004657_2005920_-	hypothetical protein	NA	NA	NA	NA
AXR68246.1\|2005995_2006229_-	transcriptional regulator	NA	NA	NA	NA
AXR68247.1\|2006309_2006735_+	hypothetical protein	NA	NA	NA	NA
AXR68248.1\|2006813_2007260_-	hypothetical protein	NA	NA	NA	NA
AXR68249.1\|2007504_2007918_-	transcriptional regulator	NA	NA	NA	NA
AXR68250.1\|2008046_2008310_+	hypothetical protein	NA	NA	NA	NA
AXR68251.1\|2008302_2008713_+	hypothetical protein	NA	NA	NA	NA
AXR68252.1\|2008709_2009093_+	hypothetical protein	NA	NA	NA	NA
AXR68253.1\|2009546_2009756_+	hypothetical protein	NA	NA	NA	NA
AXR69784.1\|2009887_2010112_+	hypothetical protein	NA	NA	NA	NA
AXR68254.1\|2010108_2010354_+	hypothetical protein	NA	NA	NA	NA
AXR68255.1\|2010355_2010607_+	hypothetical protein	NA	NA	NA	NA
AXR68256.1\|2010700_2010943_+	hypothetical protein	NA	NA	NA	NA
AXR68257.1\|2010926_2011931_+	hypothetical protein	NA	NA	NA	NA
AXR68258.1\|2011927_2013730_+\|integrase	integrase	NA	NA	NA	NA
AXR68259.1\|2013726_2014746_+	ATP-binding protein	NA	NA	NA	NA
AXR68260.1\|2014765_2014948_+	hypothetical protein	NA	NA	NA	NA
AXR68261.1\|2014934_2015537_+	nuclease inhibitor	NA	NA	NA	NA
AXR68262.1\|2015612_2016203_+	hypothetical protein	NA	NA	NA	NA
AXR68263.1\|2016189_2017875_+\|terminase	terminase	NA	NA	NA	NA
2018106:2018120	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2570298 : 2636871

Leptospira_phage(18.18%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR68665.1\|2570298_2570613_+\|protease	ATP-dependent Clp protease adaptor ClpS	NA	NA	NA	NA
AXR68666.1\|2571302_2572481_-	acyl dehydratase	NA	NA	NA	NA
AXR68667.1\|2574135_2574849_-	hypothetical protein	NA	NA	NA	NA
AXR69820.1\|2574832_2576788_+	M3 family peptidase	NA	NA	NA	NA
AXR68668.1\|2576784_2577021_-	hypothetical protein	NA	NA	NA	NA
AXR68669.1\|2577095_2577761_-	glutathione S-transferase	NA	NA	NA	NA
AXR68670.1\|2577978_2578764_+	short-chain dehydrogenase	NA	NA	NA	NA
AXR68671.1\|2578770_2579967_+	sterol desaturase family protein	A0A2K9L1K6	Tupanvirus	9.6e-08	26.6
AXR68672.1\|2580601_2580793_-	hypothetical protein	NA	NA	NA	NA
AXR68673.1\|2581113_2581341_+	hypothetical protein	Q9JMP3	Wolbachia_phage	5.8e-15	48.6
AXR69821.1\|2581427_2581640_+	hypothetical protein	NA	NA	NA	NA
AXR68674.1\|2581708_2582023_-	hypothetical protein	NA	NA	NA	NA
AXR69822.1\|2582030_2582375_-	hypothetical protein	NA	NA	NA	NA
AXR69823.1\|2582604_2583030_-	hypothetical protein	NA	NA	NA	NA
AXR68675.1\|2583173_2588057_-	hypothetical protein	NA	NA	NA	NA
AXR68676.1\|2588972_2589845_-	hypothetical protein	NA	NA	NA	NA
AXR68677.1\|2589908_2592140_+	phosphatidylserine decarboxylase	NA	NA	NA	NA
AXR68678.1\|2592371_2592707_+	DUF971 domain-containing protein	NA	NA	NA	NA
AXR68679.1\|2593477_2594539_+	flagellar motor switch protein FliN	NA	NA	NA	NA
AXR68680.1\|2594559_2595345_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA
AXR68681.1\|2595382_2596171_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA
AXR68682.1\|2596167_2596431_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA
AXR68683.1\|2596437_2597220_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA
AXR68684.1\|2597216_2598602_+	endoflagellar biosynthesis protein	NA	NA	NA	NA
AXR68685.1\|2598611_2600729_+	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
AXR68686.1\|2600780_2602070_+	flagellar biosynthesis protein FlhF	NA	NA	NA	NA
AXR68687.1\|2602096_2603008_+	MinD/ParA family protein	NA	NA	NA	NA
AXR68688.1\|2603011_2603488_+	hypothetical protein	NA	NA	NA	NA
AXR68689.1\|2603644_2604445_+	RNA polymerase sigma factor WhiG	A0A2I7SC33	Paenibacillus_phage	2.2e-08	29.2
AXR68690.1\|2604470_2606456_+	DUF342 domain-containing protein	NA	NA	NA	NA
AXR68691.1\|2606463_2606817_+	hypothetical protein	NA	NA	NA	NA
AXR68692.1\|2606832_2607966_+	hypothetical protein	NA	NA	NA	NA
AXR68693.1\|2607965_2608247_+	DUF370 domain-containing protein	NA	NA	NA	NA
AXR68694.1\|2608243_2608804_+	guanylate kinase	A0A0M5KCK5	Mollivirus	4.2e-06	25.1
AXR68695.1\|2608865_2609729_-	hypothetical protein	NA	NA	NA	NA
AXR68696.1\|2609762_2611739_-	helicase	A0A127AW80	Bacillus_phage	1.2e-82	30.1
AXR68697.1\|2611857_2613450_-	symporter	NA	NA	NA	NA
AXR68698.1\|2613809_2616383_+	ATP-dependent chaperone ClpB	A0A2I7SAX5	Vibrio_phage	3.5e-116	35.3
AXR69824.1\|2616422_2616485_-	hypothetical protein	NA	NA	NA	NA
AXR69825.1\|2617548_2619027_+	adenylate cyclase	A0A2H4N7Z5	Lake_Baikal_phage	2.9e-22	25.8
AXR68699.1\|2619094_2619619_+	ATP-binding protein	NA	NA	NA	NA
AXR68700.1\|2619620_2619992_+	hypothetical protein	NA	NA	NA	NA
AXR68701.1\|2619997_2621392_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AXR68702.1\|2621408_2622806_+	LacI family transcriptional regulator	NA	NA	NA	NA
AXR68703.1\|2624192_2625089_+	hypothetical protein	NA	NA	NA	NA
AXR68704.1\|2625895_2626336_-	VOC family protein	NA	NA	NA	NA
AXR68705.1\|2626520_2627024_-	hypothetical protein	NA	NA	NA	NA
AXR68706.1\|2628078_2628780_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.9e-28	36.1
AXR68707.1\|2628760_2629569_-\|transposase	IS5 family transposase	NA	NA	NA	NA
AXR68708.1\|2629905_2631000_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AXR69826.1\|2631339_2632152_+	formylglycine-generating enzyme family protein	A0A075BUR2	Microcystis_phage	7.9e-30	42.8
AXR69828.1\|2633858_2635055_+\|transposase	transposase	S5VTD8	Leptospira_phage	8.1e-47	39.4
AXR69827.1\|2635125_2636871_+\|transposase	transposase	S5VTD8	Leptospira_phage	1.2e-46	39.4

DBSCAN-SWA_4

2651153 : 2709783

Leptospira_phage(11.11%)

integrase,transposase,protease

attL 2635061:2635120|attR 2664105:2665376

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2635061:2635120	attL	NA	NA	NA	NA
AXR68715.1\|2651153_2651819_+\|integrase	site-specific integrase	NA	NA	NA	NA
AXR68716.1\|2652116_2652494_+	hypothetical protein	NA	NA	NA	NA
AXR68717.1\|2652611_2653661_-	hypothetical protein	NA	NA	NA	NA
AXR68718.1\|2654265_2655324_+	hypothetical protein	NA	NA	NA	NA
AXR68719.1\|2655383_2657174_-	RNA-directed DNA polymerase	NA	NA	NA	NA
AXR68720.1\|2657224_2657413_+	hypothetical protein	NA	NA	NA	NA
AXR68721.1\|2657699_2659292_+	hypothetical protein	NA	NA	NA	NA
AXR68722.1\|2659295_2660078_-	hypothetical protein	NA	NA	NA	NA
AXR68723.1\|2660181_2660892_-	hypothetical protein	NA	NA	NA	NA
AXR68724.1\|2661030_2661615_-	hypothetical protein	NA	NA	NA	NA
AXR68725.1\|2661687_2662062_-	lipoprotein	NA	NA	NA	NA
AXR68726.1\|2662064_2662916_-	hypothetical protein	NA	NA	NA	NA
AXR68727.1\|2663449_2663887_+	hypothetical protein	NA	NA	NA	NA
AXR68728.1\|2664022_2665378_+\|transposase	transposase	S5VTD8	Leptospira_phage	1.2e-46	39.4
2664105:2665376	attR	NA	NA	NA	NA
AXR68729.1\|2665378_2666242_-	flagellar biosynthesis protein FlgC	NA	NA	NA	NA
AXR68730.1\|2666682_2667138_-	transcriptional repressor	NA	NA	NA	NA
AXR68731.1\|2667367_2667892_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
AXR68732.1\|2667891_2669349_+	catalase	A0A2K9L0T1	Tupanvirus	1.8e-96	46.6
AXR68733.1\|2669475_2670981_-	thiol oxidoreductase	NA	NA	NA	NA
AXR68734.1\|2670996_2672517_-	chromosome condensation regulator	E5ERA2	Bathycoccus_sp._RCC1105_virus	2.4e-19	31.1
AXR68735.1\|2672708_2674226_+	hypothetical protein	NA	NA	NA	NA
AXR68736.1\|2674271_2674862_+	hypothetical protein	NA	NA	NA	NA
AXR68737.1\|2675487_2676258_-	hypothetical protein	NA	NA	NA	NA
AXR68738.1\|2677295_2677571_-	RNA-binding protein	NA	NA	NA	NA
AXR68739.1\|2677618_2677843_+	hypothetical protein	NA	NA	NA	NA
AXR69829.1\|2677876_2678110_+	hypothetical protein	NA	NA	NA	NA
AXR68740.1\|2678776_2679874_-	Arg-Lys translocation region protein phosphatase	NA	NA	NA	NA
AXR68741.1\|2679875_2680691_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	3.0e-13	28.3
AXR68742.1\|2680687_2680945_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
AXR68743.1\|2681374_2682184_+	hypothetical protein	NA	NA	NA	NA
AXR68744.1\|2682235_2682550_+	thioredoxin	A0A1V0SD63	Indivirus	9.2e-11	39.8
AXR68745.1\|2682573_2684733_+	cAMP/cGMP-dependent 3',5'-cyclic-AMP/GMP phosphodiesterase	NA	NA	NA	NA
AXR68746.1\|2684749_2685880_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
AXR68747.1\|2685922_2687095_+	hypothetical protein	NA	NA	NA	NA
AXR68748.1\|2687203_2687815_+	hypothetical protein	NA	NA	NA	NA
AXR68749.1\|2688474_2689773_-	MFS transporter	NA	NA	NA	NA
AXR69830.1\|2689848_2690193_-	hypothetical protein	NA	NA	NA	NA
AXR68750.1\|2690305_2690878_-	bifunctional nuclease	NA	NA	NA	NA
AXR68751.1\|2690933_2692805_-	alpha/beta fold hydrolase	NA	NA	NA	NA
AXR69831.1\|2693262_2693787_-	hypothetical protein	NA	NA	NA	NA
AXR68752.1\|2694117_2695212_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AXR68753.1\|2695764_2696994_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.9e-53	49.7
AXR68754.1\|2697441_2698533_-	hypothetical protein	NA	NA	NA	NA
AXR68755.1\|2699232_2700285_-\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	1.2e-70	42.5
AXR68756.1\|2700511_2700748_+	hypothetical protein	NA	NA	NA	NA
AXR68757.1\|2701200_2701680_-	hypothetical protein	NA	NA	NA	NA
AXR68758.1\|2702182_2702755_-	acyltransferase	NA	NA	NA	NA
AXR69832.1\|2702738_2703248_-	hypothetical protein	NA	NA	NA	NA
AXR69834.1\|2703250_2704456_-	HEAT repeat domain-containing protein	NA	NA	NA	NA
AXR69833.1\|2704493_2704964_-	response regulator	NA	NA	NA	NA
AXR68759.1\|2705070_2706309_-	hypothetical protein	NA	NA	NA	NA
AXR68760.1\|2706457_2706946_-	DNA primase	NA	NA	NA	NA
AXR68761.1\|2707246_2708545_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	4.5e-152	64.4
AXR68762.1\|2708712_2709171_+	septum formation initiator family protein	NA	NA	NA	NA
AXR68763.1\|2709189_2709783_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.6e-32	44.3

DBSCAN-SWA_5

3299393 : 3308420

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR69249.1\|3299393_3300278_-	glucose-1-phosphate thymidylyltransferase	A0A291LA53	Escherichia_phage	1.8e-96	60.3
AXR69250.1\|3300278_3301328_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-94	51.2
AXR69251.1\|3301324_3302245_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
AXR69252.1\|3302248_3302809_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.6e-45	52.3
AXR69883.1\|3303108_3304863_-	glycosyl transferase	A0A0N7G7L1	Chrysochromulina_ericina_virus	2.3e-10	32.6
AXR69884.1\|3305266_3306091_-	glycosyltransferase family 2 protein	A0A1V0S9B9	Catovirus	3.0e-08	24.0
AXR69253.1\|3306271_3307060_-	glycosyltransferase	NA	NA	NA	NA
AXR69254.1\|3307328_3308420_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2K9L0G1	Tupanvirus	3.3e-39	30.6

DBSCAN-SWA_6

3763145 : 3779461

Leptospira_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR69927.1\|3763145_3770066_+	peptidase M23	S5VY01	Leptospira_phage	0.0e+00	69.4
AXR69588.1\|3770069_3770627_+	hypothetical protein	NA	NA	NA	NA
AXR69928.1\|3770956_3771172_+	hypothetical protein	NA	NA	NA	NA
AXR69589.1\|3771270_3771462_+	hypothetical protein	NA	NA	NA	NA
AXR69590.1\|3771763_3771973_-	XRE family transcriptional regulator	NA	NA	NA	NA
AXR69591.1\|3771997_3772378_-	XRE family transcriptional regulator	A0A288WGH2	Bacillus_phage	6.1e-09	35.8
AXR69592.1\|3772535_3775526_+	DNA primase	A0A1S5RF71	Helicobacter_phage	1.1e-23	25.1
AXR69593.1\|3775888_3776953_+	recombinase XerC	A0A0K2CP59	Brevibacillus_phage	1.7e-16	26.5
AXR69594.1\|3777155_3777980_+	ParA family protein	Q9G093	Leptospira_phage	9.9e-12	27.5
AXR69595.1\|3777976_3779461_+	chromosome partitioning protein ParB	S5VKH6	Leptospira_phage	9.7e-42	34.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP030143

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

16039 : 75008

Pseudomonas_phage(28.57%)

integrase,transposase,tRNA,protease

attL 15760:15776|attR 52013:52029

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
15760:15776	attL	NA	NA	NA	NA
AXR69942.1\|16039_17215_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AXR70186.1\|17373_17946_-\|integrase	integrase core domain protein	NA	NA	NA	NA
AXR69943.1\|19164_21066_+	DUF1561 domain-containing protein	NA	NA	NA	NA
AXR69944.1\|22021_22309_+	hypothetical protein	NA	NA	NA	NA
AXR69945.1\|22365_22647_+	hypothetical protein	S5VXZ8	Leptospira_phage	1.2e-46	91.4
AXR69946.1\|25000_25237_-	hypothetical protein	NA	NA	NA	NA
AXR69947.1\|25784_26549_-	precorrin-4 C(11)-methyltransferase	NA	NA	NA	NA
AXR69948.1\|29143_29908_-	precorrin-2 C(20)-methyltransferase	NA	NA	NA	NA
AXR69949.1\|31459_33592_+	hypothetical protein	NA	NA	NA	NA
AXR69950.1\|33597_34047_-	hypothetical protein	NA	NA	NA	NA
AXR69951.1\|34193_36086_+	polysaccharide biosynthesis protein	L7RD47	Acanthamoeba_polyphaga_moumouvirus	1.7e-11	27.5
AXR69952.1\|36078_36561_+	stringent starvation protein B	NA	NA	NA	NA
AXR69953.1\|36557_38168_+	NCS2 family permease	NA	NA	NA	NA
AXR69954.1\|38369_39257_+\|protease	protease HtpX	NA	NA	NA	NA
AXR69955.1\|39468_40002_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.2e-29	43.9
AXR70187.1\|40032_41541_+\|protease	serine protease	A0A1V0CPG8	Kaumoebavirus	1.1e-16	23.8
AXR69956.1\|41555_43139_+	PDZ domain-containing protein	NA	NA	NA	NA
AXR70188.1\|43289_44522_-	hypothetical protein	NA	NA	NA	NA
AXR69957.1\|44530_46105_-	hypothetical protein	NA	NA	NA	NA
AXR69958.1\|46615_47293_+	biliverdin-producing heme oxygenase	M4QDD1	Prochlorococcus_phage	1.1e-43	44.7
AXR69959.1\|47294_48491_+	MFS transporter	NA	NA	NA	NA
AXR69960.1\|48550_50653_-	TonB-dependent receptor	NA	NA	NA	NA
AXR69961.1\|50657_51350_-	heme-binding protein HmuY	NA	NA	NA	NA
AXR69962.1\|51363_51942_-	hypothetical protein	NA	NA	NA	NA
AXR70189.1\|52211_52946_+	leucine-rich repeat domain-containing protein	NA	NA	NA	NA
52013:52029	attR	NA	NA	NA	NA
AXR69963.1\|52958_53699_-	hypothetical protein	NA	NA	NA	NA
AXR69964.1\|53962_54268_-	YbaB/EbfC family DNA-binding protein	NA	NA	NA	NA
AXR69965.1\|54389_55763_-	hypothetical protein	NA	NA	NA	NA
AXR69966.1\|56039_57662_-\|protease	ATP-dependent protease	NA	NA	NA	NA
AXR69967.1\|57758_58802_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AXR69968.1\|58916_60392_+	hypothetical protein	NA	NA	NA	NA
AXR69969.1\|60391_61534_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
AXR69970.1\|61538_62141_+	hypothetical protein	NA	NA	NA	NA
AXR69971.1\|62342_63680_+	hypothetical protein	NA	NA	NA	NA
AXR69972.1\|63793_65209_+	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	1.7e-59	34.9
AXR69973.1\|65222_66383_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
AXR69974.1\|66379_67777_+	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	7.2e-63	36.2
AXR69975.1\|67789_68860_+	hypothetical protein	NA	NA	NA	NA
AXR69976.1\|68856_69201_+	pyrophosphatase	NA	NA	NA	NA
AXR69977.1\|69201_69615_-	biopolymer transporter ExbD	NA	NA	NA	NA
AXR69978.1\|69617_70145_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
AXR69979.1\|70638_71373_+	dimethylmenaquinone methyltransferase	NA	NA	NA	NA
AXR69980.1\|71521_73573_+	hypothetical protein	NA	NA	NA	NA
AXR69981.1\|73616_75008_+\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP030142

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP030143

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection