CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP023975	Salmonella enterica subsp. enterica serovar Typhi strain Ty21a chromosome, complete genome	2 crisprs	DEDDh,cas3,c2c9_V-U4,DinG,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	1	4	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP023975_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023975_1

3895398-3895818

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

6 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP023975_1

>merge|CP023975|1|3895398-3895818|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGGCGCGGGGAACACGGACAGCAACCCGTGTCGGATATCAGACAGATCGGTTTATCCCCGCTGGCGCGGGGAACACACGCGAATCGCCAATCGCCGCCGCGTGAATTGCGGTTTATCCCCGCTGGCGCGGGGAACACCCACGATGTATGCCGACCGTGATTTTTACCGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGATACGCCTTTACGTCGCCCTCTTTGGCGCGCGGTTTATCCCCGCTGGCGCGGGGAACACATTAAAAAAGATTAATGTTGGTTATAGTTTTACGGTTTATCCCCGCTGGTGCGGGGAACACTAAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP023975|1|1|3895398-3895792|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GGACAGCAACCCGTGTCGGATATCAGACAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAAAAAAGATTAATGTTGGTTATAGTTTTA
CGGTTTATCCCCGCTGGTGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGATCGG

>CP023975|1|1|3895398-3895792|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GGACAGCAACCCGTGTCGGATATCAGACAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAAAAAAGATTAATGTTGGTTATAGTTTTA
CGGTTTATCCCCGCTGGTGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGATCGG

>CP023975|1|1|3895459-3895818|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAAAAAAGATTAATGTTGGTTATAGTTTTA
CGGTTTATCCCCGCTGGTGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP023975.1\|AXR54687.1\|3896198_3897116_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP023975.1\|AXR54598.1\|3887264_3888017_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP023975.1\|AXR56325.1\|3905099_3906182_+\|secreted-effector-protein-SopD	unknown	unknown	gnl\|CDD\|185277
CP023975.1\|AXR54893.1\|3895902_3896196_-\|CRISPR-associated-endoribonuclease-Cas2-protein	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP023975.1\|AXR58310.1\|3894336_3895383_+\|peptidase-M20/M25/M40-family-protein	unknown	unknown	gnl\|CDD\|182299
CP023975.1\|AXR56190.1\|3897819_3898545_-\|CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP023975.1\|AXR59064.1\|3889531_3890242_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP023975.1\|AXR56941.1\|3898554_3899613_-\|CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP023975.1\|AXR56400.1\|3902147_3904355_+\|CRISPR-associated-endonuclease-Cas3-HD	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP023975.1\|AXR59186.1\|3890762_3891041_-\|inner-membrane-protein-YgbE	unknown	unknown	gnl\|CDD\|371891
CP023975.1\|AXR57663.1\|3891136_3891742_-\|adenylylsulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP023975.1\|AXR57339.1\|3897115_3897820_-\|CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
CP023975.1\|AXR57002.1\|3893177_3894086_-\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP023975.1\|AXR58536.1\|3890260_3890572_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP023975.1\|AXR57379.1\|3900254_3901790_-\|CRISPR-associated-protein-CasA/Cse1	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP023975.1\|AXR58201.1\|3904362_3904848_+\|putative-cRISPR-associated-helicase-Cas3-protein	unknown	unknown	unknown
CP023975.1\|AXR59111.1\|3888006_3889056_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|234884
CP023975.1\|AXR57670.1\|3891728_3893168_-\|sulfate-adenylyltransferase,-large-subunit	unknown	unknown	gnl\|CDD\|235349
CP023975.1\|AXR55904.1\|3889052_3889532_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP023975.1\|AXR57009.1\|3899635_3900238_-\|CRISPR-associated-protein-CasB/Cse2	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193

Protein	Function_ID	Function_description	E-value
CP023975.1\|AXR54687.1\|3896198_3897116_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.77553e-155
CP023975.1\|AXR54598.1\|3887264_3888017_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	3.20971e-142
CP023975.1\|AXR56325.1\|3905099_3906182_+\|secreted-effector-protein-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP023975.1\|AXR54893.1\|3895902_3896196_-\|CRISPR-associated-endoribonuclease-Cas2-protein	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.81067e-65
CP023975.1\|AXR58310.1\|3894336_3895383_+\|peptidase-M20/M25/M40-family-protein	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP023975.1\|AXR56190.1\|3897819_3898545_-\|CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.27863e-48
CP023975.1\|AXR59064.1\|3889531_3890242_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
CP023975.1\|AXR56941.1\|3898554_3899613_-\|CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.49739e-119
CP023975.1\|AXR56400.1\|3902147_3904355_+\|CRISPR-associated-endonuclease-Cas3-HD	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.46164e-135
CP023975.1\|AXR59186.1\|3890762_3891041_-\|inner-membrane-protein-YgbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	8.22763e-39
CP023975.1\|AXR57663.1\|3891136_3891742_-\|adenylylsulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP023975.1\|AXR57339.1\|3897115_3897820_-\|CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	2.23447e-89
CP023975.1\|AXR57002.1\|3893177_3894086_-\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP023975.1\|AXR58536.1\|3890260_3890572_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP023975.1\|AXR57379.1\|3900254_3901790_-\|CRISPR-associated-protein-CasA/Cse1	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP023975.1\|AXR59111.1\|3888006_3889056_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP023975.1\|AXR57670.1\|3891728_3893168_-\|sulfate-adenylyltransferase,-large-subunit	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP023975.1\|AXR55904.1\|3889052_3889532_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP023975.1\|AXR57009.1\|3899635_3900238_-\|CRISPR-associated-protein-CasB/Cse2	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.74874e-39

>CP023975.1|AXR58310.1|3894336_3895383_+|peptidase-M20/M25/M40-family-protein
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLNNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP023975.1|AXR57002.1|3893177_3894086_-|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP023975.1|AXR57670.1|3891728_3893168_-|sulfate-adenylyltransferase,-large-subunit
MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNPDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEVCAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP023975.1|AXR57663.1|3891136_3891742_-|adenylylsulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP023975.1|AXR59186.1|3890762_3891041_-|inner-membrane-protein-YgbE
MVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP023975.1|AXR58536.1|3890260_3890572_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP023975.1|AXR59064.1|3889531_3890242_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP023975.1|AXR55904.1|3889052_3889532_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP023975.1|AXR59111.1|3888006_3889056_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADVLAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP023975.1|AXR54598.1|3887264_3888017_-|5'/3'-nucleotidase-SurE
MLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>CP023975.1|AXR54893.1|3895902_3896196_-|CRISPR-associated-endoribonuclease-Cas2-protein
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>CP023975.1|AXR54687.1|3896198_3897116_-|CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWGGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFEIVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSHPIAIPLPVALGDSGHRST
>CP023975.1|AXR57339.1|3897115_3897820_-|CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHSLFLIETKLFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>CP023975.1|AXR56190.1|3897819_3898545_-|CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>CP023975.1|AXR56941.1|3898554_3899613_-|CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFDRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>CP023975.1|AXR57009.1|3899635_3900238_-|CRISPR-associated-protein-CasB/Cse2
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERSRIRWANEYLSTSRGK
>CP023975.1|AXR57379.1|3900254_3901790_-|CRISPR-associated-protein-CasA/Cse1
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMNKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>CP023975.1|AXR56400.1|3902147_3904355_+|CRISPR-associated-endonuclease-Cas3-HD
MTQIEYLDYLCYWGKTDKSTENITCNYHLLAYHCLDVAACGEYIIKNNTFNSCNILKECNISGTNAENWIIWFLASHDIGKFARGFQKYAEFPDSPLVSPISGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAEFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHISGPSLAGAGRRGLVGARAKRYRLCLHRSCLPVAYPGAAASTW
>CP023975.1|AXR58201.1|3904362_3904848_+|putative-cRISPR-associated-helicase-Cas3-protein
MPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQIVLVSDTGEASYYSKRFGLVG
>CP023975.1|AXR56325.1|3905099_3906182_+|secreted-effector-protein-SopD
MCCIDNAVHILSCSKPCLFNKKERIERYILLRILNNINLKENIMPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT

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Crispr_ID: CP023975_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023975_2

4756512-4756615

Unclear

Consensus_repeat	Method
GTAGACCCTGATCCAGTAGACCCGGTTATCCCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023975_2

>merge|CP023975|2|4756512-4756615|CRISPRCasFinder
ATTATTCCTGATCCGGTAGACCCTGTTATTCCTGACCCTGTCATTCCCGATCCGGTAGACCCTGATCCAGTAGACCCGGTTATCCCTGACCCTGTTATTCCCGA

>CP023975|2|2|4756512-4756615|CRISPRCasFinder
ATTATTCCTGATCCGGTAGACCCTGTTATTCCTGA	CCCTGTCATTCCCGATCCGGTAGACCCTGATCCA
GTAGACCCGGTTATCCCTGACCCTGTTATTCCCGA

Protein	Signature genes	Signature genes Name	Protein_function
CP023975.1\|AXR57126.1\|4765843_4766746_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273359
CP023975.1\|AXR54994.1\|4752741_4752882_+\|hypothetical-protein	unknown	unknown	unknown
CP023975.1\|AXR58259.1\|4758259_4758595_-\|hypothetical-protein	unknown	unknown	unknown
CP023975.1\|AXR58015.1\|4751382_4752411_+\|virulence-RhuM-family-protein	unknown	unknown	gnl\|CDD\|226452
CP023975.1\|AXR57203.1\|4753261_4753399_+\|putative-transposase	unknown	unknown	gnl\|CDD\|366690
CP023975.1\|AXR56237.1\|4759900_4760581_+\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238494
CP023975.1\|AXR56041.1\|4761696_4764423_-\|magnesium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|237914
CP023975.1\|AXR57867.1\|4756736_4757690_+\|outer-membrane-autotransporter-barrel-domain-protein	unknown	unknown	gnl\|CDD\|237940
CP023975.1\|AXR57183.1\|4764642_4765320_-\|mgtC-family-protein	unknown	unknown	gnl\|CDD\|185283
CP023975.1\|AXR54670.1\|4766788_4767730_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182167
CP023975.1\|AXR55663.1\|4744397_4746716_-\|glycosyl-hydrolases-31-family-protein	unknown	unknown	gnl\|CDD\|236731
CP023975.1\|AXR54884.1\|4754128_4754746_+\|putative-regulatory-protein-LuxR	unknown	unknown	gnl\|CDD\|225360
CP023975.1\|AXR54777.1\|4764521_4764635_+\|putative-membrane-protein	unknown	unknown	unknown
CP023975.1\|AXR59089.1\|4748601_4748727_+\|hypothetical-protein	unknown	unknown	unknown
CP023975.1\|AXR56018.1\|4757784_4758249_-\|hypothetical-protein	unknown	unknown	unknown
CP023975.1\|AXR56491.1\|4760956_4761382_-\|putative-inner-membrane-protein	unknown	unknown	unknown
CP023975.1\|AXR55194.1\|4749715_4750312_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131694
CP023975.1\|AXR58769.1\|4754820_4755504_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237940
CP023975.1\|AXR58552.1\|4748809_4749154_-\|hypothetical-protein	unknown	unknown	unknown
CP023975.1\|AXR55037.1\|4746727_4748110_-\|inner-membrane-symporter-YicJ	unknown	unknown	gnl\|CDD\|183145

Protein	Function_ID	Function_description	E-value
CP023975.1\|AXR57126.1\|4765843_4766746_+\|hypothetical-protein	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.62239e-50
CP023975.1\|AXR55663.1\|4744397_4746716_-\|glycosyl-hydrolases-31-family-protein	gnl\|CDD\|236731	PRK10658, PRK10658, putative alpha-glucosidase; Provisional.	0
CP023975.1\|AXR57203.1\|4753261_4753399_+\|putative-transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	0.000244363
CP023975.1\|AXR56237.1\|4759900_4760581_+\|isochorismatase-family-protein	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	3.05871e-58
CP023975.1\|AXR54670.1\|4766788_4767730_-\|hypothetical-protein	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	1.87153e-143
CP023975.1\|AXR57867.1\|4756736_4757690_+\|outer-membrane-autotransporter-barrel-domain-protein	gnl\|CDD\|237940	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL.	0
CP023975.1\|AXR54884.1\|4754128_4754746_+\|putative-regulatory-protein-LuxR	gnl\|CDD\|225360	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription].	0.00303367
CP023975.1\|AXR58015.1\|4751382_4752411_+\|virulence-RhuM-family-protein	gnl\|CDD\|226452	COG3943, COG3943, Virulence protein [General function prediction only].	1.16306e-179
CP023975.1\|AXR56041.1\|4761696_4764423_-\|magnesium-translocating-P-type-ATPase	gnl\|CDD\|237914	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.	0
CP023975.1\|AXR57183.1\|4764642_4765320_-\|mgtC-family-protein	gnl\|CDD\|185283	PRK15385, PRK15385, MgtC family protein.	1.81992e-154
CP023975.1\|AXR55194.1\|4749715_4750312_+\|hypothetical-protein	gnl\|CDD\|131694	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein. Members of this uncharacterized protein family are found exclusively in bacteria. Neighboring genes in various genomes are also uncharacterized or may annotated as similar to restriction system proteins. [Hypothetical proteins, Conserved].	6.10019e-19
CP023975.1\|AXR58769.1\|4754820_4755504_+\|hypothetical-protein	gnl\|CDD\|237940	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL.	4.73425e-138
CP023975.1\|AXR55037.1\|4746727_4748110_-\|inner-membrane-symporter-YicJ	gnl\|CDD\|183145	PRK11462, PRK11462, putative transporter; Provisional.	0

>CP023975.1|AXR58769.1|4754820_4755504_+|hypothetical-protein
MPTPQNYSFIAIAVSAALASMVFPSQAAWVDVDSLPSSGLVSQLPPELQAIIPAQASTGFTKVGTMPNYVYQWNTGTIPVYGNGLTLNGPGAEAFEHTVTVIQNSGTGSPGVIFGNDLTIRTQSANAANNGRDVDGIRTHGANTPDNPVFIITGDRTNIYVDGQDGDGINAGYNSLGQGWTGSANIYVGDDLYIKTTGSQGRGITANAMRDASRAKNTIVVGNRVHI
>CP023975.1|AXR54884.1|4754128_4754746_+|putative-regulatory-protein-LuxR
MMRKPSQIVHCISCDLSCQLFPDSAVRVQYCHNAAFSIWPDGNAFLKKGFIEKLLLDRHNHLSSGFIFVDFSFPNLRRFTDLQWADSLANSGMHIVLISDRSLTPLANYWILKSNKIQGIIYSDDDDIVQQQKMHRLFTGRLANSKRGRTLNYTEFILLKHFVSGISIQQIVNIDNIDIKKLYVHKLRLENKLGHSIHKIISNIL
>CP023975.1|AXR57203.1|4753261_4753399_+|putative-transposase
MRKARLTEHQNIAVIKLVEAGRAVKDICQEADISEVTDDIYGHWV
>CP023975.1|AXR54994.1|4752741_4752882_+|hypothetical-protein
MGSNIKTCCDAGNRMAALNNLFYRFNFKRFGITFTAHGLLSLSHLK
>CP023975.1|AXR58015.1|4751382_4752411_+|virulence-RhuM-family-protein
MEDKYLTQSPAGEFIMFASGDGKVRVECRFESNTLWLSQGMICELYGKAKATISEHIKNIFADGELEENSVVRFYRTTASDGKNYQIQYFSLPLILAVGYRVRSPRGTQFRQWATQTLQEYLIKGFVMDDERLKNPPVGSSAVPDYFDEMLERIRDIRASERRVYLRVREIFALAADYQPSLKETTQFFQTIQNKLHFACTGYTAAELIHQRADACQPHMGLTSYKGEEVRKCDVTVAKNYLTQDEVSELNRVVNMWLDFAEDQARRRQQVFLRDWQDKLDQFLQFNDREVLQGAGKVSKKMADEKAQAEYSQFAEQQRRLKEAEGEKDIAALLQWKTEPKK
>CP023975.1|AXR55194.1|4749715_4750312_+|hypothetical-protein
MTLLLNEQYHLCCYSEIRADLRGLGYHIEHVENKSQQPGRTFDYQNLAASALDSENGLPQLGINTFGGHVQGKNKSVDMAQFIHCHLPDCSRYFAYLSNGHVVPSIDLTEQEAEYAQYTIDHLNLNSGFLQTERRNHWEELEQLFEEHIEKDWDLHQLLQLDLVPSPDHKLHEFFSITRQFFQQEAEQVLQSHAPALI
>CP023975.1|AXR58552.1|4748809_4749154_-|hypothetical-protein
MSYKYVGKHGCDVALRMGYKEYPDENAYGDAYYIKDGLKWIFNITGLKKRLGVYSDDDLRKQNYDVDTYYRVENQQEESADDEMQSLYHNLAVEEGEPVYLEGGMYLYPDGSIR
>CP023975.1|AXR59089.1|4748601_4748727_+|hypothetical-protein
MEYYFINHHLPIAKTERPFIVGYRPQRRDKSTPGLTRAGLN
>CP023975.1|AXR55037.1|4746727_4748110_-|inner-membrane-symporter-YicJ
MKSEILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSLNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVKLIGGENKALGFQGGIAALSVVAFLMLAFCFFTTKERVEAPATHTSMREDLRDIWHNDQWRIVGLLTILNILAVCVRGGAMMYYVTWILGKPGVFVAFLTTYCVGNLIGSALAKPLTDWKCKVSVFWWTNALLAVISVAMFFVPMHATIAMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSATISIIIALFTIVPAICYLLSAAIAKRYYTLKSPFLKTILEQLAQGAHRNEQEFTHKELQN
>CP023975.1|AXR55663.1|4744397_4746716_-|glycosyl-hydrolases-31-family-protein
MKISDGNWLIQPGLNLIHPVQVFDVEQHGNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGVIGVRMEHFQGALDNGPHYPLNVLQDINVEMQNNAEFAELKSGSLSVRVTKGELWSLDFLRNGVRITGSQLKNNGYVQDTNSGRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNRDGGTSTEQSYKNIPFYITNRGYGVLVNHPQCVSFEIGSEKVSKVQFSVESEYLEYFVIDGPTPKDVLNRYTQFTGRPALPPAWSFGLWLTTSFTTNYDEATVNRFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPVTFPDPKGMIHRLKAKGLKVCVWINPYIGQKSPVFQELKEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPQACEWYADKLKGLVEMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKETVGVEEAVLFARSASVGAQQFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTEQKCRMMPYLYREAARANEAGTPMMRAMMLEFPDDPACDYLDRQYMLGDAVMVAPVFSEAGDVEFYLPEGRWTHLWRNDEVQGSRWHKQQHDFLSLPVYVRDNTLLALGNNSQKPDYAWHEGTAFQLFHLDDGCEAVCEVPATDGSTIFTLQAKRTGNTITVSGEGEARNWTLCLRNITQISGTKCGSYAGSELGVVVTPQGNEVVITL
>CP023975.1|AXR57867.1|4756736_4757690_+|outer-membrane-autotransporter-barrel-domain-protein
MGSYLANNYAANTLFMTRLHDRLGETQYTDMLTGEKKVTSLWMRNVGAHTRFNDGSGQLKTRINSYVLQLGGDLAQWSTDSLDRWHIGAMAGYANSQNRTQSSVSDYHSRGQVTGYSVGLYGTWYANNIDRSGAYVDTWMLYNWFDNKVMGQDQAAEKYKSKGITASVEAGYSFRLGESAHQSYWLQPKAQVVWMGVQANDHREANGTLVKDDTAGNLLTRMGVKAYINGHNAIDDNKSREFQPFVEANWIHNTQPASVKMDDVSSDMRGTKNIGELKVGIEGQITPRLNVWGNVAQQVGDQGYSNTQGLLGVKYSF
>CP023975.1|AXR56018.1|4757784_4758249_-|hypothetical-protein
MLACLTLLFLGVGLGHLFHLYTEKNRDPEKCTAPVIVFYNNTQANLTLDFMYSLKKRTGVVSISGTYYVDNKMSGVIRRDVSYVWSENKDSTHFISTDINKVTRDETLSDAVIETVLPDFYVYPGKSISYTILTQGHRGFMFTIGKRPIFFCTH
>CP023975.1|AXR58259.1|4758259_4758595_-|hypothetical-protein
MTGTFAVGILLGTISWQTVPDKDFYDRYTLVETTQGCHFFSRNEDIESGSRFAGYKLMILKTGMDCQKYPWVYFPSSSRTPAVTALICQQPYKTRGDTGCVTLFFRGVTHG
>CP023975.1|AXR56237.1|4759900_4760581_+|isochorismatase-family-protein
MSTPANFNGQRPAIDANDAVMLLIDHQSGLFQTVGDMPMPELRARAAALAKIATLCNMPVITTASVPQGPNGPLIPEIHANAPHAQYVARKGEINAWDNADFVQAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITMARVVQAGVVPMDTAAVASELQRTWNREDAAEWADVYTKIFPAYQLLIESYTKAQEVVKNNELLDSQRA
>CP023975.1|AXR56491.1|4760956_4761382_-|putative-inner-membrane-protein
MNNRRGLTAVLATLITFSLSATPVLANPGNGNGGGHGNNAANQGNNGNGHKGNAGQKTEHRKNGGKPDHVESDISYAVARQLAVNLGLTGYQSLPPGIAKNLARGKPLPPGIAKKRCRRLCWDNYLIIRAMSGKSLGIIWC
>CP023975.1|AXR56041.1|4761696_4764423_-|magnesium-translocating-P-type-ATPase
MTDMNIENRKLNRPASENDKQHKKVFPIEAEAFHSPEETLARLNSHRQGLTIEEAGERLKVYGRNEVAHEQVPPVLVQLLQAFNNPFIYVLMALAGVSFITDYWLPLRRGEETDLTGVLIILTMVSLSGLLRFWQEFRTNRAAQALKKMVRTTATMLRRGPGNIGAVQEEIPIEELVPGDVVFLAAGDLVPADVRLLASRDLFISQLILSGESLPVEKYDVMADVAGKDSEQLPDKDKSLLDLGNICLMGTNVTSGRAQAVVVATGSRTWFGSLAKSIVGTRTQTAFDRGVNSVSWLLIRFMLIMVPVVLLINGFSKGDWVEASLFALAVAVGLTPEMLPMIVSSNLAKGAIAMSRRKVIVKRLNAIQNFGAMDVLCTDKTGTLTQDNIFLEHHLDVSGVKSSRVLMLAWLNSSSQSGARNVMDRAILRFGEGRIAPSTKARFIKRDELPFDFVRRRVSVLVEDAQHGDRCLICKGAVEEMMMVATHLREGDRVVALTETRRELLLAKTEDYNAQGFRVLLIATRKLDGSGNNPTLSVEDETELTIEGMLTFLDPPKESAGKAIAALRDNGVAVKVLTGDNPVVTARICLEVGIDTHDILIGTQVEAMSDAELASEVEKRAVFARLTPLQKTRILQALQKNGHTVGFLGDGINDAPALRDADVGISVDSAADIAKESSDIILLEKDLMVLEEGVIKGRETFGNIIKYLNMTASSNFGNVFSVLVASAFIPFLPMLAIHLLIQNLMYDISQLSLPWDKMDKEFLRKPRKWDAKNIGRFMLWIGPTSSIFDITTFALMWYVFAANNVEAQALFQSGWFIEGLLSQTLVVHMLRTQKIPFIQSRATLPVLLTTGLIMAIGIYIPFSPLGAMVGLEPLPLSYFPWLVATLLSYCLVAQGMKRFYIKRFGQWF
>CP023975.1|AXR54777.1|4764521_4764635_+|putative-membrane-protein
MHKKGYCLLTILSGFYFIDSGISIIPSLYAWRNVAIE
>CP023975.1|AXR57183.1|4764642_4765320_-|mgtC-family-protein
MFPYILNLLAAMLLGALIGAERQWRQRMAGLRTNALVATGAAVFILSSMTTSPDSPGRIAAQIVSGIGFLGAGVIMREGMNVRGLNTAATLWCSAGIGVLCGLGQFKNALAATIIILCANILLREAAQRINQLPVSAEAEKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIHWSIDSQ
>CP023975.1|AXR57126.1|4765843_4766746_+|hypothetical-protein
MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSRMSSQFLTMIRLLFAGLILVTFSFMHGDKIFSILKNRKDALSLLIFSVVGALTVQLTFLLTIEKSNAATATVLQFLSPTIIVAWFALARRTRPGILVLTAILTSLIGTFLLVTHGNPTSLSISSGALFWGIASAFAAAFYTTWPSRLIAQYGTLPVVGWSMSFGGLILLPFYAKEGTHFAVSGSLILAFFYLVVIGTSLTFSLYLKGAQLIGGPKASILSCAEPLSSALLSLLLLGISFTLPDWLGTLLILSSVILISLDSRRRARAA
>CP023975.1|AXR54670.1|4766788_4767730_-|hypothetical-protein
MKKSPTSTPHDAVFKTFLRHPDTARDFLNIHLPHLLRIRCDLTTLKLAPDSFIEKNLRAFYSDVLWSLKTCEGDGYIYVVIEHQSTPDAHMAFRLMCYATAAMQRHLDAGHKTLPLVIPMLFYHGAKSPYPFSLCWLDEFGDPALARQLYATAFPLVDITVVPDNEIMQHRRIAMLELVQKHIRQRDLMGLVERLAVLLIMGNANDSQLKALFNYLLIQHGSTPRFGKFIREVARCVPQHKERLMTIVDRIRESGRRKGKREGVQQGIQQGIHQGKQEEALRIAHTMLEQGIEREMVLMITGLSDEEIKAKRH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	CP023975.1	4756601-4756634	2	0.941

1. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to position: 4756601-4756634, mismatch: 2, identity: 0.941

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
ccctgttattcccgatccggtggaccctgatcca	Protospacer
******.**************.************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP023975_1	1.3\|3895549\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895549-3895580	32	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	453979-454010	5	0.844
CP023975_1	1.3\|3895549\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895549-3895580	32	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	251896-251927	5	0.844
CP023975_1	1.3\|3895549\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895549-3895580	32	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	6517-6548	5	0.844
CP023975_1	1.3\|3895549\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895549-3895580	32	NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	238872-238903	5	0.844
CP023975_1	1.3\|3895549\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895549-3895580	32	NZ_MN433457	Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence	235351-235382	5	0.844
CP023975_1	1.3\|3895549\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895549-3895580	32	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	378779-378810	5	0.844
CP023975_1	1.3\|3895549\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895549-3895580	32	NZ_CP045003	Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence	82539-82570	5	0.844
CP023975_1	1.3\|3895549\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895549-3895580	32	NZ_CP045917	Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence	224279-224310	5	0.844
CP023975_1	1.3\|3895549\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895549-3895580	32	MF344571	Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence	221127-221158	5	0.844
CP023975_1	1.3\|3895549\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895549-3895580	32	MF344569	Pseudomonas aeruginosa plasmid p12939-PER, complete sequence	284046-284077	5	0.844
CP023975_1	1.3\|3895549\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895549-3895580	32	MF344570	Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence	219145-219176	5	0.844
CP023975_1	1.3\|3895549\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895549-3895580	32	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	55495-55526	5	0.844
CP023975_1	1.3\|3895549\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895549-3895580	32	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	376216-376247	5	0.844
CP023975_1	1.3\|3895549\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895549-3895580	32	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	134871-134902	5	0.844
CP023975_1	1.3\|3895549\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895549-3895580	32	NZ_CP016215	Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence	88841-88872	5	0.844
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	KJ019071	Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome	59609-59640	7	0.781
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	MN694480	Marine virus AFVG_250M133, complete genome	20886-20917	7	0.781
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	MN694671	Marine virus AFVG_250M145, complete genome	23163-23194	7	0.781
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	MN694753	Marine virus AFVG_250M144, complete genome	25459-25490	7	0.781
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	MN694231	Marine virus AFVG_250M143, complete genome	21163-21194	7	0.781
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	MN693981	Marine virus AFVG_250M146, complete genome	18773-18804	7	0.781
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	NZ_CP046723	Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence	559039-559070	8	0.75
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	214654-214685	8	0.75
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	578776-578807	8	0.75
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	592092-592123	8	0.75
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	MN694115	Marine virus AFVG_250M901, complete genome	49467-49498	8	0.75
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_KR091915	Klebsiella pneumoniae strain KPC-DK05 plasmid pKPC-DK05, complete sequence	34745-34778	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_LN824136	Klebsiella pneumoniae genome assembly MS6671.v1, plasmid : _Plasmid_C_Kpneumoniae_MS6671	8497-8530	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_CP054370	Escherichia coli strain SCU-115 plasmid pSCU-115-2, complete sequence	11080-11113	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_CP015505	Klebsiella pneumoniae strain SKGH01 plasmid unnamed 5, complete sequence	19664-19697	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_CP026060	Proteus mirabilis strain FDAARGOS_80 plasmid unnamed1, complete sequence	8699-8732	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_CP028999	Klebsiella pneumoniae strain AR_0079 plasmid unnamed2, complete sequence	6552-6585	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_CP027258	Escherichia coli strain EC11 plasmid unnamed3, complete sequence	13540-13573	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_CP023823	Escherichia coli strain 7/2 plasmid p7_2.3, complete sequence	8497-8530	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_CP026025	Klebsiella pneumoniae strain 11420 plasmid p11420-KPC, complete sequence	24864-24897	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_CP025915	Escherichia coli strain 203740 plasmid p203740_35, complete sequence	16768-16801	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_LS999564	Escherichia coli isolate EC-TO143 plasmid 5, complete sequence	8856-8889	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_CP006640	Escherichia coli PCN061 plasmid PCN061p4, complete sequence	14131-14164	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_CP029801	Salmonella enterica subsp. enterica serovar Anatum strain R16.0676 plasmid pR16.0676_34k, complete sequence	16058-16091	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_CP024853	Escherichia coli strain AR_0006 plasmid tig00000176, complete sequence	8500-8533	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_LT985287	Escherichia coli strain RPC3 plasmid RCS69_pI, complete sequence	39427-39460	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_CP015914	Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy2, complete sequence	117964-117997	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NC_020122	Citrobacter freundii strain CFSTE plasmid pN-Cit, complete sequence	10428-10461	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_CP018988	Escherichia coli strain Ecol_AZ146 plasmid pECAZ146_3, complete sequence	8856-8889	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_MK033500	Salmonella enterica subsp. enterica serovar Anatum strain R13.0957_pConj58k plasmid pConj58k, complete sequence	15665-15698	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_MK033501	Salmonella enterica subsp. enterica serovar Anatum strain R13.0957_pConj83k plasmid pConj83k, complete sequence	63964-63997	8	0.765
CP023975_2	2.1\|4756547\|34\|CP023975\|CRISPRCasFinder	4756547-4756580	34	NZ_MK033499	Escherichia coli strain C600_pConj125k plasmid pConj125k, complete sequence	116072-116105	8	0.765
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	NZ_CP046630	Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence	66427-66458	9	0.719
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	NZ_CP046920	Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence	70206-70237	9	0.719
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	MN694046	Marine virus AFVG_250M906, complete genome	22321-22352	9	0.719
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	MN693836	Marine virus AFVG_250M487, complete genome	10882-10913	9	0.719
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	MN693891	Marine virus AFVG_250M480, complete genome	21841-21872	9	0.719
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	MK268344	Salmonella phage Munch, complete genome	122526-122557	9	0.719
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	MN694071	Marine virus AFVG_250M483, complete genome	16976-17007	9	0.719
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	MN694294	Marine virus AFVG_250M486, complete genome	8469-8500	9	0.719
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	MN693751	Marine virus AFVG_250M485, complete genome	13096-13127	9	0.719
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	MN694002	Marine virus AFVG_250M481, complete genome	18787-18818	9	0.719
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	MN694650	Marine virus AFVG_250M482, complete genome	20198-20229	9	0.719
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	MN693906	Marine virus AFVG_250M905, complete genome	17506-17537	9	0.719
CP023975_1	1.5\|3895671\|32\|CP023975\|CRISPRCasFinder,CRT,PILER-CR	3895671-3895702	32	MN694711	Marine virus AFVG_250M484, complete genome	24974-25005	9	0.719
CP023975_1	1.6\|3895732\|32\|CP023975\|CRISPRCasFinder,CRT	3895732-3895763	32	KR052482	Sinorhizobium phage phiN3, complete genome	197290-197321	9	0.719

1. spacer 1.3|3895549|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

2. spacer 1.3|3895549|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

3. spacer 1.3|3895549|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

4. spacer 1.3|3895549|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039989 (Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

5. spacer 1.3|3895549|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MN433457 (Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

6. spacer 1.3|3895549|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

7. spacer 1.3|3895549|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045003 (Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

8. spacer 1.3|3895549|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045917 (Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

9. spacer 1.3|3895549|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MF344571 (Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

10. spacer 1.3|3895549|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MF344569 (Pseudomonas aeruginosa plasmid p12939-PER, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

11. spacer 1.3|3895549|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MF344570 (Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

12. spacer 1.3|3895549|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

13. spacer 1.3|3895549|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

14. spacer 1.3|3895549|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015879 (Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

15. spacer 1.3|3895549|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016215 (Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

16. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to KJ019071 (Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aattacaatggttaatgttggttatagtttag	Protospacer
* * * ** *.******************* .

17. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MN694480 (Marine virus AFVG_250M133, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

18. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MN694671 (Marine virus AFVG_250M145, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

19. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MN694753 (Marine virus AFVG_250M144, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

20. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MN694231 (Marine virus AFVG_250M143, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

21. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MN693981 (Marine virus AFVG_250M146, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

22. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

23. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

24. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

25. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

26. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MN694115 (Marine virus AFVG_250M901, complete genome) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
attaaaaaatattaatcttggttcttccgtaa	Protospacer
********* ****** ****** *  . * *

27. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_KR091915 (Klebsiella pneumoniae strain KPC-DK05 plasmid pKPC-DK05, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

28. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_LN824136 (Klebsiella pneumoniae genome assembly MS6671.v1, plasmid : _Plasmid_C_Kpneumoniae_MS6671) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

29. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_CP054370 (Escherichia coli strain SCU-115 plasmid pSCU-115-2, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

30. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_CP015505 (Klebsiella pneumoniae strain SKGH01 plasmid unnamed 5, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

31. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_CP026060 (Proteus mirabilis strain FDAARGOS_80 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

32. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_CP028999 (Klebsiella pneumoniae strain AR_0079 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

33. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_CP027258 (Escherichia coli strain EC11 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

34. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_CP023823 (Escherichia coli strain 7/2 plasmid p7_2.3, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

35. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_CP026025 (Klebsiella pneumoniae strain 11420 plasmid p11420-KPC, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

36. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_CP025915 (Escherichia coli strain 203740 plasmid p203740_35, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

37. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_LS999564 (Escherichia coli isolate EC-TO143 plasmid 5, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

38. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_CP006640 (Escherichia coli PCN061 plasmid PCN061p4, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

39. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_CP029801 (Salmonella enterica subsp. enterica serovar Anatum strain R16.0676 plasmid pR16.0676_34k, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

40. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_CP024853 (Escherichia coli strain AR_0006 plasmid tig00000176, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

41. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_LT985287 (Escherichia coli strain RPC3 plasmid RCS69_pI, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

42. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_CP015914 (Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy2, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

43. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NC_020122 (Citrobacter freundii strain CFSTE plasmid pN-Cit, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

44. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_CP018988 (Escherichia coli strain Ecol_AZ146 plasmid pECAZ146_3, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

45. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_MK033500 (Salmonella enterica subsp. enterica serovar Anatum strain R13.0957_pConj58k plasmid pConj58k, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

46. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_MK033501 (Salmonella enterica subsp. enterica serovar Anatum strain R13.0957_pConj83k plasmid pConj83k, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

47. spacer 2.1|4756547|34|CP023975|CRISPRCasFinder matches to NZ_MK033499 (Escherichia coli strain C600_pConj125k plasmid pConj125k, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

48. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046630 (Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aagaaaaatgattaatgttgtttataataact	Protospacer
*  ***** *********** *****.*  .

49. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046920 (Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aagaaaaatgattaatgttgtttataataact	Protospacer
*  ***** *********** *****.*  .

50. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MN694046 (Marine virus AFVG_250M906, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

51. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MN693836 (Marine virus AFVG_250M487, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

52. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MN693891 (Marine virus AFVG_250M480, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

53. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MK268344 (Salmonella phage Munch, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
ggcagcattgattaatgatggttttagtttta	Protospacer
. .*. *  ******** ***** ********

54. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MN694071 (Marine virus AFVG_250M483, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

55. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MN694294 (Marine virus AFVG_250M486, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

56. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MN693751 (Marine virus AFVG_250M485, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

57. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MN694002 (Marine virus AFVG_250M481, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

58. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MN694650 (Marine virus AFVG_250M482, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

59. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MN693906 (Marine virus AFVG_250M905, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

60. spacer 1.5|3895671|32|CP023975|CRISPRCasFinder,CRT,PILER-CR matches to MN694711 (Marine virus AFVG_250M484, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

61. spacer 1.6|3895732|32|CP023975|CRISPRCasFinder,CRT matches to KR052482 (Sinorhizobium phage phiN3, complete genome) position: , mismatch: 9, identity: 0.719

taaaacaccggttgcgcaacctccgcggggat	CRISPR spacer
aacaacaccggttgcgaaacctacgcaaaaaa	Protospacer
 * ************* ***** ***....*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

252874 : 344476

Salmonella_phage(62.0%)

tail,capsid,head,terminase,portal,tRNA,transposase,lysis,integrase,plate

attL 242374:242388|attR 345276:345290

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
242374:242388	attL	NA	NA	NA	NA
AXR55898.1\|252874_253975_-\|tRNA	tRNA (uracil-5-)-methyltransferase	NA	NA	NA	NA
AXR57153.1\|254348_256193_+	tonB-dependent vitamin B12 receptor	A0A0P0I887	Acinetobacter_phage	2.2e-11	30.0
AXR55842.1\|256206_256989_+	glutamate racemase	NA	NA	NA	NA
AXR58337.1\|262692_262938_+	hypothetical protein	NA	NA	NA	NA
AXR56754.1\|262897_263926_+	UDP-N-acetylenolpyruvoylglucosamine reductase	NA	NA	NA	NA
AXR55782.1\|263922_264885_+	bifunctional protein BirA	NA	NA	NA	NA
AXR54956.1\|264919_265870_-	pantothenate kinase	A0A1B1ISL9	uncultured_Mediterranean_phage	7.9e-29	32.5
AXR56504.1\|266828_268013_+	translation elongation factor Tu	A0A2K9L516	Tupanvirus	2.6e-13	26.5
AXR58886.1\|268242_268626_+	preprotein translocase, SecE subunit	NA	NA	NA	NA
AXR54776.1\|268627_269173_+	transcription termination/antitermination factor NusG	NA	NA	NA	NA
AXR56696.1\|269435_269759_+	ribosomal protein L11	NA	NA	NA	NA
AXR55260.1\|269762_270467_+	ribosomal protein L1	NA	NA	NA	NA
AXR59152.1\|270882_271380_+	50S ribosomal protein L10	NA	NA	NA	NA
AXR57350.1\|271446_271812_+	ribosomal protein L7/L12	NA	NA	NA	NA
AXR58679.1\|272129_276158_+	DNA-directed RNA polymerase, beta subunit	A0A0N9R0J7	Chrysochromulina_ericina_virus	9.4e-23	29.0
AXR55104.1\|276234_280458_+	DNA-directed RNA polymerase, beta' subunit	A0A2I7QNZ7	Vibrio_phage	5.0e-67	27.1
AXR59340.1\|280544_280823_+	putative membrane protein	NA	NA	NA	NA
AXR58633.1\|280828_281149_-	hypothetical protein	NA	NA	NA	NA
AXR59298.1\|281126_281264_-	hypothetical protein	NA	NA	NA	NA
AXR59258.1\|281494_281623_-\|transposase	putative transposase	A0A077SLK2	Escherichia_phage	9.8e-12	88.6
AXR58657.1\|281626_281842_+	putative cytoplasmic protein	NA	NA	NA	NA
AXR57062.1\|281922_283056_-	thiazole biosynthesis protein ThiH	NA	NA	NA	NA
AXR56148.1\|283052_283823_-	thiazole synthase	NA	NA	NA	NA
AXR57946.1\|283824_284025_-	thiamine biosynthesis protein ThiS	NA	NA	NA	NA
AXR58927.1\|284005_284764_-	sulfur carrier protein ThiS adenylyltransferase	A0A1V0SAV8	Catovirus	7.0e-12	28.5
AXR54972.1\|284756_285392_-	thiamine-phosphate synthase	NA	NA	NA	NA
AXR56633.1\|285391_287287_-	thiamine biosynthesis protein ThiC	NA	NA	NA	NA
AXR59013.1\|287650_288139_-	regulator of sigma D	NA	NA	NA	NA
AXR58941.1\|288231_289005_+	NADH pyrophosphatase zinc ribbon domain protein	NA	NA	NA	NA
AXR59032.1\|289045_290110_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
AXR55696.1\|290119_290791_+	endonuclease V family protein	A0A1V0SJW5	Klosneuvirus	2.1e-20	28.7
AXR55476.1\|290832_291423_+	hypothetical protein	NA	NA	NA	NA
AXR58618.1\|291609_291882_+	DNA-binding protein HU-alpha	A7KV42	Bacillus_phage	5.5e-20	57.8
AXR59262.1\|291893_292586_+	hypothetical protein	NA	NA	NA	NA
AXR56839.1\|292627_293083_-	zinc resistance-associated protein	NA	NA	NA	NA
AXR55512.1\|294739_296065_+	transcriptional regulatory protein ZraR	NA	NA	NA	NA
AXR55043.1\|296061_297351_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
AXR58459.1\|297366_298956_-	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.4e-68	47.4
AXR59055.1\|299281_299404_-	hypothetical protein	NA	NA	NA	NA
AXR54892.1\|305017_305611_-	lysR substrate binding domain protein	NA	NA	NA	NA
AXR57749.1\|305626_305854_-	bacterial regulatory helix-turn-helix, lysR family protein	NA	NA	NA	NA
AXR57407.1\|305972_306311_+	hypothetical protein	NA	NA	NA	NA
AXR54952.1\|306418_306877_-\|transposase	transposase IS200 like family protein	NA	NA	NA	NA
AXR54778.1\|307046_308249_-	sigma-54 interaction domain protein	NA	NA	NA	NA
AXR58599.1\|308458_308677_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
AXR58704.1\|308767_309868_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
AXR55532.1\|309864_310350_-	phage P2 GpU family protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
AXR55362.1\|310346_313424_-\|tail	phage tail tape measure protein, TP901 family, core region	E5G6Q1	Salmonella_phage	0.0e+00	63.1
AXR59221.1\|313416_313536_-	phage P2 GpE family protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
AXR59110.1\|313550_313853_-	mu-like prophage FluMu gp41 family protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
AXR56771.1\|313907_314423_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
AXR56218.1\|314432_315605_-\|tail	phage tail sheath family protein	A0A1S6KZY7	Salmonella_phage	6.6e-203	89.7
AXR57564.1\|315649_315790_+	hypothetical protein	NA	NA	NA	NA
AXR58149.1\|315747_316314_-	resolvase, N terminal domain protein	A0A0F7LA37	Escherichia_phage	5.4e-86	85.7
AXR57333.1\|316742_317183_+\|tail	caudovirales tail fiber assembly family protein	A0A0F7LDZ0	Escherichia_phage	3.1e-52	68.0
AXR58177.1\|317154_317748_-\|tail	caudovirales tail fiber assembly family protein	M1SV83	Escherichia_phage	9.2e-60	64.3
AXR57314.1\|317747_319262_-\|tail	phage tail-collar fiber family protein	M1TAS6	Escherichia_phage	6.8e-200	73.2
AXR58448.1\|319258_319864_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
AXR58178.1\|319856_320765_-\|plate	baseplate J-like family protein	A0A1S6KZY6	Salmonella_phage	1.3e-142	89.7
AXR57331.1\|320751_321111_-	lysozyme family protein	A0A1S6KZZ4	Salmonella_phage	6.1e-51	84.9
AXR58291.1\|321107_321686_-\|plate	phage baseplate assembly V family protein	A0A1S6KZX7	Salmonella_phage	5.5e-94	86.5
AXR55226.1\|321754_322201_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	6.6e-63	85.6
AXR58703.1\|322193_322625_-\|tail	P2 phage tail completion R family protein	E5G6N3	Salmonella_phage	1.5e-72	95.1
AXR56879.1\|322587_322761_-	putative fels-2 prophage protein	A0A1S6KZX6	Salmonella_phage	1.9e-18	75.4
AXR59168.1\|322720_323149_-\|lysis	phage lysis regulatory, LysB family protein	E5G6N2	Salmonella_phage	2.2e-47	77.3
AXR58531.1\|323145_323523_-	putative membrane protein	A0A1S6KZZ2	Salmonella_phage	2.3e-16	40.0
AXR58129.1\|323524_324037_-	phage lysozyme family protein	E5G6N1	Salmonella_phage	3.1e-88	92.3
AXR58438.1\|324017_324233_-	putative membrane protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
AXR56640.1\|324236_324440_-	phage Tail Protein X family protein	E5G6M9	Salmonella_phage	1.4e-31	92.5
AXR55672.1\|324439_324904_-\|head	phage head completion family protein	A0A1S6KZW8	Salmonella_phage	1.4e-76	89.0
AXR54600.1\|324999_325650_-\|terminase	phage small terminase subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
AXR58999.1\|325653_326712_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.4e-180	93.1
AXR54949.1\|326728_327562_-\|capsid	phage capsid scaffolding (GPO) serine peptidase family protein	A0A1S6KZW9	Salmonella_phage	1.5e-121	90.6
AXR56102.1\|327704_329471_+	sigma-70, region 4 family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
AXR58160.1\|329470_330508_+\|portal	phage portal protein, PBSX family	A0A1S6KZW5	Salmonella_phage	1.3e-173	89.5
AXR56965.1\|330542_331283_-	HIRAN domain protein	NA	NA	NA	NA
AXR58089.1\|331279_332194_-	hypothetical protein	NA	NA	NA	NA
AXR59237.1\|332879_333686_+	putative lipoprotein	A0A2H4J8D6	uncultured_Caudovirales_phage	7.3e-52	49.4
AXR57965.1\|333857_334094_+	putative lipoprotein	NA	NA	NA	NA
AXR56868.1\|334503_336918_-	bacteriophage replication protein A	E5G6L9	Salmonella_phage	0.0e+00	97.5
AXR58042.1\|336914_337772_-	DNA adenine methylase family protein	E5G6L8	Salmonella_phage	1.7e-160	96.8
AXR55379.1\|337768_337996_-	phage/conjugal plasmid C-4 type zinc finger, TraR family protein	E5G6L7	Salmonella_phage	2.7e-36	100.0
AXR54758.1\|337995_338229_-	hypothetical protein	E5G6L6	Salmonella_phage	2.0e-31	94.8
AXR56072.1\|338296_338638_-	hypothetical protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
AXR59056.1\|338660_338885_-	putative cell division blocking protein	NA	NA	NA	NA
AXR56078.1\|339059_339569_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
AXR56873.1\|339601_339823_-	putative dNA-binding protein	NA	NA	NA	NA
AXR57547.1\|340188_340518_+	putative repressor protein	F1BUS8	Erwinia_phage	7.9e-13	31.4
AXR55359.1\|340913_341966_+\|integrase	phage integrase family protein	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
AXR58639.1\|342006_342240_-	subunit ChlI of Mg-chelatase family protein	NA	NA	NA	NA
AXR54961.1\|342829_344476_+	acetolactate synthase, large subunit, biosynthetic type	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	2.6e-64	31.3
345276:345290	attR	NA	NA	NA	NA

DBSCAN-SWA_2

612002 : 704617

107

Salmonella_phage(82.0%)

tail,capsid,head,terminase,portal,lysis,integrase,plate

attL 613175:613191|attR 709847:709863

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR55174.1\|612002_613154_+\|integrase	phage integrase family protein	B5WZU7	Pseudomonas_phage	6.3e-49	44.8
613175:613191	attL	NA	NA	NA	NA
AXR59324.1\|613250_613718_+	putative exported protein	NA	NA	NA	NA
AXR54780.1\|613929_614805_+	putative plasmid transfer protein	NA	NA	NA	NA
AXR59264.1\|615311_616226_+	hypothetical protein	NA	NA	NA	NA
AXR57993.1\|616244_616985_+	hypothetical protein	NA	NA	NA	NA
AXR59158.1\|616963_617650_+	transglycosylase SLT domain protein	NA	NA	NA	NA
AXR56278.1\|617685_618186_+	integrating conjugative element, PFL_4695 family domain protein	NA	NA	NA	NA
AXR58750.1\|618195_618765_+	restriction endonuclease family protein	NA	NA	NA	NA
AXR56233.1\|618784_620875_+	conjugative coupling factor TraD, PFGI-1 class	NA	NA	NA	NA
AXR58810.1\|620864_621011_+	hypothetical protein	NA	NA	NA	NA
AXR56610.1\|621069_621630_+	hypothetical protein	NA	NA	NA	NA
AXR54943.1\|621866_622121_+	hypothetical protein	NA	NA	NA	NA
AXR59163.1\|622120_622360_+	hypothetical protein	NA	NA	NA	NA
AXR56192.1\|622389_622752_+	hypothetical protein	NA	NA	NA	NA
AXR58437.1\|622872_623049_-	hypothetical protein	NA	NA	NA	NA
AXR57356.1\|623240_623786_+	hypothetical protein	NA	NA	NA	NA
AXR57868.1\|623785_624052_+	hypothetical protein	NA	NA	NA	NA
AXR56002.1\|624674_626153_+	bacterial conjugation TrbI-like family protein	NA	NA	NA	NA
AXR57856.1\|626283_626589_+	putative lipoprotein	NA	NA	NA	NA
AXR55041.1\|626588_627005_+	F pilus assembly Type-IV secretion system for plasmid transfer family protein	NA	NA	NA	NA
AXR56295.1\|627001_629425_+	conjugative transfer ATPase, PFL_4706 family	NA	NA	NA	NA
AXR58489.1\|629403_629583_+	hypothetical protein	NA	NA	NA	NA
AXR56277.1\|629579_629966_+	hypothetical protein	NA	NA	NA	NA
AXR56142.1\|630120_630513_+	hypothetical protein	NA	NA	NA	NA
AXR58035.1\|630509_631478_+	traU family protein	NA	NA	NA	NA
AXR57700.1\|631690_632923_+	integrating conjugative element protein, PFL_4711 family	NA	NA	NA	NA
AXR56223.1\|633255_634761_+	putative traG protein	NA	NA	NA	NA
AXR55108.1\|634999_636247_+	phosphoadenosine phosphosulfate reductase family protein	A0A1B0WNC0	Flavobacterium_phage	1.8e-28	30.6
AXR56848.1\|636231_636873_+	parB-like nuclease domain protein	A0A0F7L444	uncultured_marine_virus	1.1e-55	53.7
AXR56203.1\|638369_638564_+	hypothetical protein	NA	NA	NA	NA
AXR57177.1\|638891_639812_+\|integrase	integrase family protein	NA	NA	NA	NA
AXR57080.1\|640535_640838_+	putative topoisomerase	NA	NA	NA	NA
AXR57574.1\|640933_641314_+	hypothetical protein	NA	NA	NA	NA
AXR56163.1\|641684_641894_+	hypothetical protein	NA	NA	NA	NA
AXR55355.1\|641914_642364_+	putative membrane protein	NA	NA	NA	NA
AXR55036.1\|642360_642657_+	putative exported protein	NA	NA	NA	NA
AXR55363.1\|642734_643193_+	putative membrane protein	NA	NA	NA	NA
AXR58720.1\|643281_645231_+	hypothetical protein	A0A2K9V411	Faecalibacterium_phage	5.9e-31	38.3
AXR58939.1\|645302_646211_+	hypothetical protein	NA	NA	NA	NA
AXR57394.1\|646284_647184_+	hypothetical protein	NA	NA	NA	NA
AXR58892.1\|647258_647585_+	hypothetical protein	NA	NA	NA	NA
AXR57270.1\|647684_647840_-	hypothetical protein	NA	NA	NA	NA
AXR57363.1\|648085_649360_-	IMS HHH motif family protein	F1C5A5	Cronobacter_phage	4.9e-151	61.8
AXR56680.1\|650328_651429_-	phage late control D family protein	E5G6Q3	Salmonella_phage	7.9e-190	92.1
AXR57675.1\|651425_651911_-	phage P2 GpU family protein	E5G6Q2	Salmonella_phage	9.4e-71	93.2
AXR57613.1\|651910_654691_-\|tail	phage tail tape measure protein, TP901 family, core region	A0A2H4JGB2	uncultured_Caudovirales_phage	3.5e-125	41.1
AXR56887.1\|654683_654803_-	phage P2 GpE family protein	E5G6Q0	Salmonella_phage	1.2e-14	94.9
AXR58436.1\|654817_655120_-	mu-like prophage FluMu gp41 family protein	E5G6P9	Salmonella_phage	3.3e-42	93.9
AXR57005.1\|655174_655690_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	2.7e-92	99.4
AXR56834.1\|655699_656872_-\|tail	phage tail sheath family protein	A0A1S6KZY7	Salmonella_phage	1.1e-221	99.2
AXR57182.1\|656974_657193_-	helix-turn-helix domain of resolvase family protein	A0A1S6L009	Salmonella_phage	4.0e-29	88.9
AXR58867.1\|657406_658129_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA
AXR58479.1\|658326_658734_-\|tail	caudovirales tail fiber assembly family protein	A0A1B0V844	Salmonella_phage	4.1e-59	84.2
AXR56846.1\|658740_660360_-\|tail	phage tail-collar fiber family protein	E5G6P0	Salmonella_phage	2.7e-154	90.9
AXR56023.1\|660356_660962_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
AXR58897.1\|660954_661863_-\|plate	baseplate J-like family protein	E5G6N8	Salmonella_phage	5.2e-155	97.0
AXR58773.1\|661849_662209_-	lysozyme family protein	A0A1S6KZZ4	Salmonella_phage	6.8e-58	96.6
AXR57755.1\|662205_662784_-\|plate	phage baseplate assembly V family protein	E5G6N6	Salmonella_phage	3.9e-108	99.5
AXR56298.1\|662852_663299_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-66	90.4
AXR58938.1\|663291_663723_-\|tail	P2 phage tail completion R family protein	A0A1S6KZY0	Salmonella_phage	2.5e-75	98.6
AXR57000.1\|663685_663859_-	putative fels-2 prophage protein	A0A1S6KZX6	Salmonella_phage	1.4e-24	98.2
AXR54830.1\|663818_664244_-\|lysis	phage lysis regulatory, LysB family protein	A0A1S6KZX8	Salmonella_phage	2.5e-67	97.9
AXR55152.1\|664243_664621_-	putative membrane protein	A0A1S6KZZ2	Salmonella_phage	1.5e-60	99.2
AXR57344.1\|664625_665135_-	phage lysozyme family protein	A0A1S6KZY9	Salmonella_phage	1.3e-91	97.0
AXR54806.1\|665115_665331_-	putative membrane protein	E5G6N0	Salmonella_phage	3.8e-32	98.6
AXR58521.1\|665334_665538_-	phage Tail Protein X family protein	E5G6M9	Salmonella_phage	9.4e-33	97.0
AXR58511.1\|665537_666002_-\|head	phage head completion family protein	A0A1S6KZW8	Salmonella_phage	2.4e-84	98.1
AXR56027.1\|666095_666746_-\|terminase	phage small terminase subunit	E5G6M7	Salmonella_phage	2.4e-114	99.5
AXR58430.1\|666749_667814_-\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	1.3e-194	98.3
AXR59128.1\|667830_668664_-\|capsid	phage capsid scaffolding (GPO) serine peptidase family protein	E5G6M5	Salmonella_phage	6.1e-126	87.4
AXR56228.1\|668806_670573_+	sigma-70, region 4 family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	96.4
AXR55179.1\|670572_671616_+\|portal	phage portal protein, PBSX family	A0A1S6KZW5	Salmonella_phage	2.1e-176	86.6
AXR55610.1\|671664_672360_-	hypothetical protein	NA	NA	NA	NA
AXR54753.1\|672379_673444_-	hypothetical protein	NA	NA	NA	NA
AXR57578.1\|673440_674505_-	hypothetical protein	NA	NA	NA	NA
AXR57513.1\|674828_675062_-	dinI-like family protein	A0A1S6L014	Salmonella_phage	2.2e-33	92.2
AXR58290.1\|675073_675247_-	putative levan regulatory protein	A0A1S6L006	Salmonella_phage	7.5e-23	96.5
AXR57104.1\|675429_677838_-	bacteriophage replication protein A	A0A1S6L028	Salmonella_phage	0.0e+00	95.1
AXR56431.1\|677828_678689_-	DNA adenine methylase family protein	E5G6L8	Salmonella_phage	3.4e-132	81.8
AXR58520.1\|678685_679270_-	exonuclease family protein	A0A1S6L012	Salmonella_phage	1.1e-76	73.7
AXR58482.1\|679266_679494_-	phage/conjugal plasmid C-4 type zinc finger, TraR family protein	A0A1S6L007	Salmonella_phage	1.0e-35	94.7
AXR55173.1\|679493_679727_-	hypothetical protein	A0A1S6L021	Salmonella_phage	9.8e-26	84.4
AXR57224.1\|679794_680046_-	hypothetical protein	A0A1S6L019	Salmonella_phage	6.4e-39	97.6
AXR57924.1\|680099_680246_-	hypothetical protein	A0A1S6L005	Salmonella_phage	5.4e-22	95.8
AXR57832.1\|680307_680817_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.3e-83	94.1
AXR59245.1\|680849_681092_-	putative bacteriophage regulatory protein	A0A1S6KZZ6	Salmonella_phage	2.3e-38	98.8
AXR57292.1\|681436_681841_+	putative phage regulatory protein cI	A0A1S6KZZ7	Salmonella_phage	1.8e-30	50.4
AXR55933.1\|681844_682870_+\|integrase	phage integrase family protein	A0A1S6L016	Salmonella_phage	2.7e-200	98.2
AXR58514.1\|682976_683114_-	peptidase S24-like family protein	I6S1S3	Salmonella_phage	1.7e-06	60.5
AXR58996.1\|683597_683711_+	hypothetical protein	NA	NA	NA	NA
AXR56598.1\|683976_684234_+	hypothetical protein	NA	NA	NA	NA
AXR59247.1\|684244_685135_+	methyltransferase domain protein	NA	NA	NA	NA
AXR58362.1\|685134_685881_+	hypothetical protein	NA	NA	NA	NA
AXR58039.1\|686182_688153_-	anaphase-promoting complex, cyclosome, subunit 3 family protein	NA	NA	NA	NA
AXR58888.1\|688172_689477_-	polysaccharide export inner-membrane, BexC/CtrB/KpsE family protein	NA	NA	NA	NA
AXR55035.1\|689499_690195_-	putative vi polysaccharide export ATP-binding protein VexC	NA	NA	NA	NA
AXR57929.1\|690220_691015_-	ABC-2 type transporter family protein	NA	NA	NA	NA
AXR54644.1\|691024_692092_-	polysaccharide biosynthesis/export family protein	NA	NA	NA	NA
AXR58662.1\|692136_693873_-	glycosyl transferases group 1 family protein	NA	NA	NA	NA
AXR58880.1\|693872_696344_-	putative vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA
AXR58216.1\|696391_697438_-	3-beta hydroxysteroid dehydrogenase/isomerase family protein	A0A2K9L0I7	Tupanvirus	1.4e-74	45.0
AXR55698.1\|697440_698718_-	nucleotide sugar dehydrogenase family protein	M1HYW7	Paramecium_bursaria_Chlorella_virus	1.3e-21	26.7
AXR57296.1\|698962_699121_-	putative vi polysaccharide biosynthesis protein TviA	NA	NA	NA	NA
AXR56815.1\|700042_700231_+	hypothetical protein	NA	NA	NA	NA
AXR54577.1\|700355_701867_+	description family protein	A0A126DN25	Acinetobacter_phage	2.0e-42	29.0
AXR57764.1\|701850_703440_+	integrating conjugative element relaxase, PFGI-1 class	NA	NA	NA	NA
AXR58818.1\|703603_704617_+\|integrase	phage integrase family protein	NA	NA	NA	NA
709847:709863	attR	NA	NA	NA	NA

DBSCAN-SWA_3

833490 : 880661

Enterobacteria_phage(40.0%)

tRNA,transposase,capsid,integrase

attL 845005:845020|attR 891951:891966

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR57546.1\|833490_833937_-\|transposase	transposase family protein	NA	NA	NA	NA
AXR55607.1\|834011_834398_-	enamine/imine deaminase	NA	NA	NA	NA
AXR55254.1\|834474_834936_-	aspartate carbamoyltransferase, regulatory subunit	NA	NA	NA	NA
AXR55816.1\|834948_835884_-	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	6.5e-52	39.2
AXR56285.1\|836111_836600_-	arginine repressor, C-terminal domain protein	NA	NA	NA	NA
AXR58564.1\|836596_836713_-	hypothetical protein	NA	NA	NA	NA
AXR58980.1\|836786_838190_-	C4-dicarboxylate anaerobic carrier family protein	NA	NA	NA	NA
AXR58719.1\|838245_839250_-	ornithine carbamoyltransferase	NA	NA	NA	NA
AXR57325.1\|839249_839387_-	hypothetical protein	NA	NA	NA	NA
AXR55201.1\|839361_840294_-	carbamate kinase	NA	NA	NA	NA
AXR56626.1\|840304_841525_-	arginine deiminase	NA	NA	NA	NA
AXR58218.1\|841625_841805_+	hypothetical protein	NA	NA	NA	NA
AXR56120.1\|842199_842652_+	toxin-antitoxin biofilm protein TabA	NA	NA	NA	NA
AXR56753.1\|842725_843730_-	ornithine carbamoyltransferase	NA	NA	NA	NA
AXR56706.1\|843895_844312_+	regulator of ribonuclease activity B	NA	NA	NA	NA
AXR55637.1\|844370_845135_+\|tRNA	tRNA- family protein	NA	NA	NA	NA
845005:845020	attL	NA	NA	NA	NA
AXR54656.1\|845144_845300_-	hypothetical protein	NA	NA	NA	NA
AXR56779.1\|845379_845868_-	hypothetical protein	NA	NA	NA	NA
AXR56624.1\|845974_846478_-	acetyltransferase domain protein	NA	NA	NA	NA
AXR58313.1\|846672_847860_+	hypothetical protein	NA	NA	NA	NA
AXR57489.1\|848001_850857_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.6e-141	37.4
AXR56935.1\|850856_851300_-	DNA polymerase III subunit chi	NA	NA	NA	NA
AXR58168.1\|851436_852948_-	cytosol aminopeptidase	Q6GYZ8	Mycoplasma_phage	1.9e-48	38.7
AXR55829.1\|853342_854443_+	lipopolysaccharide export system permease protein LptF	NA	NA	NA	NA
AXR59202.1\|854442_855525_+	lipopolysaccharide export system permease protein LptG	NA	NA	NA	NA
AXR54968.1\|855730_856729_-	periplasmic binding and sugar binding domain of LacI family protein	NA	NA	NA	NA
AXR59271.1\|856792_857809_-	gnt-II system L-idonate transporter	NA	NA	NA	NA
AXR56407.1\|858753_860019_+\|integrase	integrase	B7SYF8	Stenotrophomonas_phage	1.6e-74	41.0
AXR57432.1\|860081_861158_-	kinase domain protein	A0A2H4UU60	Bodo_saltans_virus	7.8e-17	28.2
AXR55358.1\|861154_862213_-	phosphotransferase enzyme family protein	G9BWE0	Planktothrix_phage	4.9e-56	44.7
AXR56064.1\|862202_863366_-	phosphatase 2C family protein	NA	NA	NA	NA
AXR57677.1\|863641_864208_-	polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.8e-60	64.9
AXR55851.1\|864223_864463_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	3.7e-20	60.5
AXR54513.1\|864466_865210_-\|capsid	putative phage capsid protein	NA	NA	NA	NA
AXR57963.1\|865749_866073_+	helix-turn-helix domain protein	Q7M299	Enterobacteria_phage	3.6e-26	70.0
AXR56471.1\|866362_866557_+	putative phage immunity repressor protein	Q7M2A7	Enterobacteria_phage	4.6e-21	83.9
AXR58478.1\|866553_866781_+	putative bacteriophage protein	NA	NA	NA	NA
AXR58540.1\|866777_867098_+	putative p4 bacteriophage protein	NA	NA	NA	NA
AXR56843.1\|869542_869662_-	hypothetical protein	NA	NA	NA	NA
AXR57479.1\|869678_869807_+	hypothetical protein	NA	NA	NA	NA
AXR54546.1\|870353_870497_-\|integrase	integrase core domain protein	NA	NA	NA	NA
AXR58952.1\|871001_871208_-\|transposase	putative transposase	NA	NA	NA	NA
AXR57708.1\|872147_872267_+	fimbrial protein	NA	NA	NA	NA
AXR55570.1\|872981_873227_+	gram-negative pili assembly chaperone, C-terminal domain protein	NA	NA	NA	NA
AXR58173.1\|873231_875790_+	papC C-terminal domain protein	NA	NA	NA	NA
AXR55823.1\|876080_876200_+	putative membrane protein	NA	NA	NA	NA
AXR56339.1\|876265_876910_-	CFA/I fimbrial subunit D	NA	NA	NA	NA
AXR54588.1\|876933_877080_-	putative fimbrial operon positive regulatory protein	NA	NA	NA	NA
AXR57904.1\|877656_877866_+	faeA-like family protein	NA	NA	NA	NA
AXR56167.1\|877850_878201_+	bacterial regulatory, luxR family protein	NA	NA	NA	NA
AXR55890.1\|878179_878323_+	hypothetical protein	NA	NA	NA	NA
AXR58663.1\|878773_879100_+	DSBA-like thioredoxin domain protein	NA	NA	NA	NA
AXR59225.1\|879089_879236_+	hypothetical protein	NA	NA	NA	NA
AXR58138.1\|879286_880132_+	sdiA-regulated family protein	NA	NA	NA	NA
AXR55032.1\|880101_880239_-	hypothetical protein	NA	NA	NA	NA
AXR58546.1\|880394_880661_+\|transposase	transposase family protein	NA	NA	NA	NA
891951:891966	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1763432 : 1772603

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR54724.1\|1763432_1764380_+	ABC transporter family protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
AXR54667.1\|1764363_1765095_+	putative osmoprotectant uptake system permease protein YehW	NA	NA	NA	NA
AXR59332.1\|1765242_1765974_-	merR regulatory family protein	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AXR54850.1\|1766196_1767882_+	putative sensor-like histidine kinase YehU	Q9EYF3	Enterobacteria_phage	6.9e-278	90.7
AXR54535.1\|1767878_1768598_+	response regulator	NA	NA	NA	NA
AXR54955.1\|1768644_1769112_+	hypothetical protein	Q9EYF4	Enterobacteria_phage	1.4e-74	91.0
AXR57797.1\|1769168_1769591_-	hypothetical protein	NA	NA	NA	NA
AXR59175.1\|1769870_1770329_-	hypothetical protein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AXR59234.1\|1770569_1772603_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	26.9

DBSCAN-SWA_5

1848494 : 1859001

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR58485.1\|1848494_1849898_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.1e-21	26.5
AXR57199.1\|1850075_1850969_+	regulatory protein GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AXR56351.1\|1851345_1852431_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AXR56397.1\|1852430_1853330_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.9e-31	36.3
AXR58193.1\|1853377_1854256_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.3e-107	64.8
AXR59021.1\|1854259_1854808_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.7e-53	58.6
AXR56690.1\|1854813_1855788_+	CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase	NA	NA	NA	NA
AXR57134.1\|1855803_1856577_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AXR58010.1\|1856581_1857661_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.1
AXR58913.1\|1857687_1859001_+	CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_6

1965482 : 1972536

Salmonella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR57744.1\|1965482_1965722_+	protein UmuD	I6S1S3	Salmonella_phage	1.2e-29	82.3
AXR57120.1\|1965724_1966993_+	IMS HHH motif family protein	I6RSM4	Salmonella_phage	3.3e-224	91.2
AXR59240.1\|1967075_1967192_+	hypothetical protein	NA	NA	NA	NA
AXR57293.1\|1967438_1967651_+	cold shock-like protein CspG	A0A1W6JNX5	Morganella_phage	1.5e-20	70.0
AXR57434.1\|1968110_1969295_-	hypothetical protein	Q1MVN1	Enterobacteria_phage	1.4e-107	56.4
AXR57212.1\|1969738_1969870_-	hypothetical protein	NA	NA	NA	NA
AXR55221.1\|1969978_1970257_+	inner membrane YedR domain protein	NA	NA	NA	NA
AXR56777.1\|1970336_1971032_+	hypothetical protein	S4W232	Pandoravirus	2.1e-07	27.5
AXR57168.1\|1971105_1972536_+	DNA (cytosine-5-)-methyltransferase family protein	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_7

2361873 : 2434995

Burkholderia_virus(40.0%)

tail,head,protease,terminase,tRNA,transposase,integrase,plate

attL 2400889:2400905|attR 2433903:2433919

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR55261.1\|2361873_2363148_+\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	1.6e-85	42.1
AXR58998.1\|2363207_2363894_+	pyridoxal kinase	NA	NA	NA	NA
AXR56685.1\|2363896_2364502_-	glutathione S-transferase GstA	NA	NA	NA	NA
AXR57961.1\|2364606_2366112_-	dipeptide and tripeptide permease A	NA	NA	NA	NA
AXR56907.1\|2366712_2367348_-	endonuclease III	NA	NA	NA	NA
AXR57696.1\|2367347_2368040_-	electron transport complex, RnfABCDGE type, E subunit	NA	NA	NA	NA
AXR57327.1\|2368042_2368663_-	electron transport complex, RnfABCDGE type, G subunit	NA	NA	NA	NA
AXR58020.1\|2368666_2369725_-	electron transport complex, RnfABCDGE type, D subunit	NA	NA	NA	NA
AXR54586.1\|2369725_2371747_-	electron transport complex, RnfABCDGE type, C subunit	NA	NA	NA	NA
AXR55654.1\|2371739_2372318_-	electron transport complex, RnfABCDGE type, B subunit	NA	NA	NA	NA
AXR55982.1\|2372317_2372899_-	electron transport complex, RnfABCDGE type, A subunit	NA	NA	NA	NA
AXR56807.1\|2372975_2373416_-	inner membrane protein YdgK	NA	NA	NA	NA
AXR55249.1\|2373504_2373720_-	oriC-binding nucleoid-associated protein	NA	NA	NA	NA
AXR59308.1\|2374351_2375392_+	hypothetical protein	NA	NA	NA	NA
AXR54543.1\|2375465_2376467_-	adenosine deaminase	NA	NA	NA	NA
AXR55461.1\|2376833_2376983_-	putative pTS system protein, glucose-specific 2B/C component	NA	NA	NA	NA
AXR56327.1\|2377172_2378681_-	protein YdgA	NA	NA	NA	NA
AXR55485.1\|2378783_2379959_-	mannose-6-phosphate isomerase, class I	NA	NA	NA	NA
AXR55671.1\|2380158_2381805_+	fumarate hydratase class I, aerobic	NA	NA	NA	NA
AXR55023.1\|2381972_2383376_+	fumarate hydratase, class II	NA	NA	NA	NA
AXR57330.1\|2383372_2384302_-	DNA replication terminus site-binding protein	NA	NA	NA	NA
AXR57385.1\|2384377_2385679_-	sensor protein RstB	W8CYF6	Bacillus_phage	5.7e-14	22.7
AXR58233.1\|2385789_2387490_-	amidohydrolase family protein	NA	NA	NA	NA
AXR56681.1\|2387648_2388800_-	outer membrane protein N	Q1MVN1	Enterobacteria_phage	3.2e-117	59.1
AXR58690.1\|2388975_2389098_+	hypothetical protein	NA	NA	NA	NA
AXR56185.1\|2389280_2390012_-	transcriptional regulatory protein RstA	NA	NA	NA	NA
AXR56743.1\|2390138_2390474_+	inner membrane protein YdgC	NA	NA	NA	NA
AXR55497.1\|2390535_2391918_-	putative arginine/ornithine antiporter	NA	NA	NA	NA
AXR56571.1\|2392067_2392214_+	hypothetical protein	NA	NA	NA	NA
AXR58300.1\|2392198_2392771_-	resolvase, N terminal domain protein	A0A0A7NPV4	Enterobacteria_phage	8.8e-84	84.7
AXR58537.1\|2393345_2393963_+\|tail	caudovirales tail fiber assembly family protein	Q9MCR5	Enterobacteria_phage	5.8e-65	59.9
AXR58902.1\|2393969_2394446_-	phage Tail Collar domain protein	A0A0F7LCR3	Escherichia_phage	1.9e-44	56.4
AXR56678.1\|2394456_2394960_-	phage Tail Collar domain protein	A0A0F7LCR3	Escherichia_phage	1.7e-38	56.3
AXR56689.1\|2395020_2395962_-	phage Tail Collar domain protein	M1TAS6	Escherichia_phage	1.4e-54	65.3
AXR55175.1\|2395964_2396543_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	6.4e-66	65.8
AXR57034.1\|2396535_2397639_-\|plate	baseplate J-like family protein	Q6QI99	Burkholderia_phage	5.4e-106	54.3
AXR57102.1\|2397629_2397977_-	lysozyme family protein	Q6QIA0	Burkholderia_phage	8.6e-34	60.6
AXR57664.1\|2398033_2398561_-\|plate	phage baseplate assembly V family protein	Q6QIA1	Burkholderia_phage	1.5e-21	46.5
AXR56347.1\|2398557_2399712_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	4.7e-84	47.1
AXR58829.1\|2399699_2399912_-	phage Tail Protein X family protein	Q6QIA3	Burkholderia_phage	2.4e-18	60.0
AXR55208.1\|2399911_2400796_-	phage P2 GpU family protein	A4JWL1	Burkholderia_virus	7.5e-50	47.0
AXR54623.1\|2400795_2403261_-\|tail	phage tail tape measure protein, TP901 family, core region	A4JWL0	Burkholderia_virus	2.2e-168	42.6
2400889:2400905	attL	NA	NA	NA	NA
AXR54575.1\|2403436_2403772_-	mu-like prophage FluMu gp41 family protein	NA	NA	NA	NA
AXR55956.1\|2403869_2404103_-	hypothetical protein	NA	NA	NA	NA
AXR57855.1\|2404153_2404675_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	8.0e-68	68.2
AXR56279.1\|2404674_2406102_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	3.7e-216	77.4
AXR58615.1\|2406091_2406343_-	hypothetical protein	NA	NA	NA	NA
AXR57585.1\|2406342_2406807_-	gp37 family protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
AXR56782.1\|2406806_2407253_-	hypothetical protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
AXR55188.1\|2407254_2407593_-	putative dihydrolipoamide acyltransferase	NA	NA	NA	NA
AXR55020.1\|2407602_2408556_-	hypothetical protein	A4JWK0	Burkholderia_virus	5.2e-65	44.5
AXR55385.1\|2408570_2409686_-\|protease	putative protease	A4JWJ9	Burkholderia_virus	7.9e-97	51.1
AXR59288.1\|2409900_2410359_-	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	1.5e-30	44.8
AXR56558.1\|2410361_2411183_-\|head	phage head morphogenesis, SPP1 gp7 family domain protein	A4JWJ6	Burkholderia_virus	5.3e-98	61.2
AXR55119.1\|2411163_2412660_-	hypothetical protein	A4JWJ5	Burkholderia_virus	8.0e-169	59.6
AXR54710.1\|2412659_2414255_-\|terminase	terminase-like family protein	A4JWJ4	Burkholderia_virus	9.3e-184	62.6
AXR56332.1\|2414251_2414797_-	hypothetical protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
AXR58931.1\|2414796_2415108_-	putative gp55	A0A0S4L0A3	Pseudomonas_phage	2.1e-31	62.6
AXR58837.1\|2415107_2415434_-	putative phage membrane protein	Q6QIC4	Burkholderia_phage	9.6e-19	49.5
AXR56125.1\|2415430_2416081_-	putative lipoprotein	Q5ZQY9	Pseudomonas_phage	8.1e-09	32.9
AXR57470.1\|2416064_2416793_-	transglycosylase SLT domain protein	Q5ZQZ1	Pseudomonas_phage	2.7e-61	57.4
AXR57550.1\|2416795_2417146_-	hypothetical protein	A4JWP3	Burkholderia_virus	4.5e-22	53.0
AXR56745.1\|2417389_2418061_-	37-kD nucleoid-associated bacterial family protein	NA	NA	NA	NA
AXR58971.1\|2418038_2418413_+	hypothetical protein	A4JWN3	Burkholderia_virus	3.8e-27	59.5
AXR56180.1\|2418422_2418587_+	gp41 family domain protein	NA	NA	NA	NA
AXR58050.1\|2418590_2420360_+\|integrase	integrase core domain protein	Q6QIE0	Burkholderia_phage	2.8e-229	68.5
AXR56318.1\|2420370_2421537_+	molybdopterin guanine dinucleotide synthesis B family protein	A4JWN1	Burkholderia_virus	3.3e-122	59.7
AXR54967.1\|2421523_2421637_-	putative membrane protein	NA	NA	NA	NA
AXR57684.1\|2421683_2421809_+	hypothetical protein	NA	NA	NA	NA
AXR54900.1\|2421836_2422367_+	bacteriophage Mu Gam like family protein	L7P7T1	Pseudomonas_phage	3.4e-58	66.1
AXR56368.1\|2422377_2422599_-	hypothetical protein	NA	NA	NA	NA
AXR55751.1\|2422655_2422928_+	hypothetical protein	NA	NA	NA	NA
AXR55335.1\|2422937_2423240_+	hypothetical protein	NA	NA	NA	NA
AXR54997.1\|2423236_2423620_+	hypothetical protein	K7PJQ4	Enterobacteria_phage	2.3e-27	58.9
AXR58825.1\|2423612_2423828_+	hypothetical protein	NA	NA	NA	NA
AXR56266.1\|2423824_2424508_+	hypothetical protein	A0A2P9JZH4	Alteromonadaceae_phage	2.6e-34	37.3
AXR54747.1\|2424504_2424735_+	hypothetical protein	NA	NA	NA	NA
AXR57301.1\|2424724_2424940_+	putative membrane protein	NA	NA	NA	NA
AXR54930.1\|2424932_2425382_+	hypothetical protein	A4JWM5	Burkholderia_virus	9.4e-25	46.6
AXR59219.1\|2425353_2425743_+	mor transcription activator family protein	Q6QIE8	Burkholderia_phage	4.5e-31	54.2
AXR57315.1\|2425924_2426869_-	protein YdgH	NA	NA	NA	NA
AXR57266.1\|2427395_2428925_+	NAD(P)(+) transhydrogenase (AB-specific), alpha subunit	NA	NA	NA	NA
AXR54536.1\|2428935_2430324_+	NAD(P) transhydrogenase subunit beta	NA	NA	NA	NA
AXR56911.1\|2430498_2431533_-	AI-2 transport protein TqsA	NA	NA	NA	NA
AXR54995.1\|2431516_2431636_+	hypothetical protein	NA	NA	NA	NA
AXR56804.1\|2431700_2431838_+	hypothetical protein	NA	NA	NA	NA
AXR57036.1\|2431949_2432312_+	spermidine export protein MdtJ	NA	NA	NA	NA
AXR58199.1\|2432298_2432628_+	small Multidrug Resistance family protein	NA	NA	NA	NA
AXR58659.1\|2432662_2433484_-	trypsin-like peptidase domain protein	NA	NA	NA	NA
AXR56835.1\|2433752_2434004_-	acid shock repeat family protein	NA	NA	NA	NA
2433903:2433919	attR	NA	NA	NA	NA
AXR55735.1\|2434536_2434995_+\|transposase	transposase IS200 like family protein	NA	NA	NA	NA

DBSCAN-SWA_8

2454211 : 2460061

uncultured_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR56699.1\|2454211_2454538_+	hypothetical protein	A0A218MNG8	uncultured_virus	1.3e-23	52.0
AXR58028.1\|2454518_2454650_+	hypothetical protein	NA	NA	NA	NA
AXR54845.1\|2454659_2455874_+	mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein	Q6A202	Oenococcus_phage	1.8e-46	29.2
AXR58653.1\|2455884_2456748_+	alcohol dehydrogenase GroES-like domain protein	NA	NA	NA	NA
AXR56466.1\|2456885_2458181_+	sugar (and other) transporter family protein	Q6JIH2	Burkholderia_virus	1.1e-25	25.8
AXR57908.1\|2458235_2458349_-	hypothetical protein	NA	NA	NA	NA
AXR56828.1\|2458324_2458870_+	mannitol dehydrogenase Rossmann domain protein	G9E6E2	Micromonas_pusilla_virus	4.1e-06	30.4
AXR55640.1\|2459050_2459791_+	mannitol dehydrogenase C-terminal domain protein	H8ZJP8	Ostreococcus_tauri_virus	2.8e-18	32.3
AXR55103.1\|2459857_2460061_-	putative selenoprotein YdfZ	J9Q802	Salmonella_phage	2.9e-13	55.2

DBSCAN-SWA_9

2882205 : 2956306

Salmonella_phage(72.88%)

tail,head,protease,terminase,transposase,integrase

attL 2911715:2911729|attR 2956341:2956355

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR56204.1\|2882205_2882664_-\|transposase	transposase IS200 like family protein	NA	NA	NA	NA
AXR56320.1\|2882753_2883017_-	putative bacterial regulatory protein, AraC	NA	NA	NA	NA
AXR54717.1\|2883033_2883156_-	ybhB/YbcL family Raf kinase inhibitor-like domain protein	NA	NA	NA	NA
AXR58014.1\|2883143_2883581_-	hypothetical protein	NA	NA	NA	NA
AXR57996.1\|2883795_2885007_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA
AXR56216.1\|2885064_2885382_+	heat shock protein HspQ	NA	NA	NA	NA
AXR57375.1\|2885426_2885840_-	coA binding domain protein	NA	NA	NA	NA
AXR57722.1\|2886013_2886676_+	hypothetical protein	NA	NA	NA	NA
AXR57478.1\|2886770_2887229_+	methylglyoxal synthase	NA	NA	NA	NA
AXR54768.1\|2887264_2889319_-	helicase IV	A7KV33	Bacillus_phage	6.5e-20	27.6
AXR58619.1\|2889442_2889889_+	inner membrane protein YccF	NA	NA	NA	NA
AXR57108.1\|2889907_2892061_+	inner membrane protein YccS	NA	NA	NA	NA
AXR59155.1\|2892047_2892530_-	protein sxy	NA	NA	NA	NA
AXR57566.1\|2892869_2893379_+	cell division inhibitor SulA	NA	NA	NA	NA
AXR56382.1\|2893733_2894786_+	outer membrane protein A	NA	NA	NA	NA
AXR56853.1\|2894857_2895310_-	organizer of macrodomain of Terminus of chromosome family protein	NA	NA	NA	NA
AXR57163.1\|2895495_2897256_+\|protease	lon protease (S16) C-terminal proteolytic domain protein	NA	NA	NA	NA
AXR56230.1\|2897324_2897843_+	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA	NA	NA	NA	NA
AXR58926.1\|2898363_2898927_-	hypothetical protein	NA	NA	NA	NA
AXR54632.1\|2898923_2900564_-	mce related family protein	NA	NA	NA	NA
AXR58118.1\|2900568_2901822_-	integral membrane, PqiA family protein	NA	NA	NA	NA
AXR58525.1\|2901836_2903744_-	heme ABC exporter, ATP-binding protein CcmA	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
AXR55659.1\|2903756_2905865_-	ribosomal RNA large subunit methyltransferase K/L	W6LLI2	Streptococcus_phage	5.1e-20	29.6
AXR56829.1\|2905963_2907073_+	hypothetical protein	NA	NA	NA	NA
AXR56263.1\|2907069_2907612_-	cell division protein ZapC	NA	NA	NA	NA
AXR54550.1\|2907777_2908788_-	dihydroorotate dehydrogenase	NA	NA	NA	NA
AXR57497.1\|2908995_2911608_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.1e-19	22.6
2911715:2911729	attL	NA	NA	NA	NA
AXR55125.1\|2912033_2912312_+	dinI-like family protein	S4TNM0	Salmonella_phage	2.4e-26	92.3
AXR57259.1\|2913522_2913663_-	putative dNA-invertase	S4TTF2	Salmonella_phage	4.8e-12	92.5
AXR58968.1\|2913832_2913949_+	hypothetical protein	NA	NA	NA	NA
AXR57221.1\|2914247_2914766_-\|tail	caudovirales tail fiber assembly family protein	A0A1B0VCD0	Salmonella_phage	1.7e-46	62.8
AXR58011.1\|2914780_2916292_-\|tail	putative side tail fiber protein	S4TP62	Salmonella_phage	1.5e-111	59.4
AXR57044.1\|2916291_2916972_-	hypothetical protein	A0A0M5M1K4	Salmonella_phage	6.9e-128	98.7
AXR55403.1\|2916968_2918168_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	8.5e-214	97.5
AXR54729.1\|2918168_2918522_-	hypothetical protein	A0A0M4R339	Salmonella_phage	3.2e-60	98.3
AXR58500.1\|2918762_2919428_-	putative translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	6.8e-104	86.0
AXR58277.1\|2919576_2919819_-	putative bacteriophage protein	NA	NA	NA	NA
AXR58636.1\|2920004_2920736_-	hypothetical protein	NA	NA	NA	NA
AXR56136.1\|2920930_2921071_-	putative exported protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.7e-09	71.1
AXR55536.1\|2921262_2922294_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	1.2e-96	51.4
AXR57037.1\|2922296_2922599_-	putative bacteriophage protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	57.0
AXR56637.1\|2922602_2923253_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.0e-56	60.6
AXR57159.1\|2923252_2925205_-	putative lytic transglycosylase, catalytic	A0A0M4REK7	Salmonella_phage	1.8e-181	56.0
AXR57674.1\|2925382_2925835_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	1.9e-57	76.6
AXR56172.1\|2925838_2926279_-	hypothetical protein	A0A2H4J619	uncultured_Caudovirales_phage	3.5e-56	74.7
AXR58812.1\|2926290_2927436_-	hypothetical protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.2e-163	74.5
AXR55651.1\|2927439_2927988_-	putative bacteriophage protein	A0A0M4R331	Salmonella_phage	5.1e-81	75.8
AXR55465.1\|2927977_2928367_-	putative bacteriophage protein	A0A0M3ULK0	Salmonella_phage	6.0e-68	98.4
AXR57914.1\|2928353_2928908_-	putative bacteriophage protein	A0A0M4S631	Salmonella_phage	4.8e-95	100.0
AXR58004.1\|2928904_2929312_-	hypothetical protein	A0A0M5M3S2	Salmonella_phage	7.1e-72	97.8
AXR56478.1\|2929277_2929646_-	putative bacteriophage protein	A0A0M4RTX5	Salmonella_phage	8.7e-61	100.0
AXR56665.1\|2929687_2930629_-	hypothetical protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	100.0
AXR55768.1\|2930640_2931138_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
AXR58232.1\|2931142_2932375_-	hypothetical protein	A0A0M4R5A6	Salmonella_phage	1.4e-227	99.0
AXR55712.1\|2932389_2932998_-\|head	phage head morphogenesis, SPP1 gp7 family domain protein	A0A0M4REK0	Salmonella_phage	6.4e-101	88.1
AXR57728.1\|2933011_2934481_-	hypothetical protein	A0A0M4S6U1	Salmonella_phage	1.7e-280	99.2
AXR58841.1\|2934480_2935521_-	hypothetical protein	A0A077KAW0	Edwardsiella_phage	3.7e-133	67.7
AXR54847.1\|2935849_2936602_-\|terminase	putative phage terminase small subunit	A0A0M3ULJ9	Salmonella_phage	3.4e-11	56.5
AXR54825.1\|2937015_2937393_-	putative gp63	Q6UAR9	Klebsiella_phage	4.9e-43	68.5
AXR54709.1\|2937435_2937975_-	hypothetical protein	A0A291LBG9	Klebsiella_phage	2.5e-08	38.4
AXR57586.1\|2937971_2938586_-	chitinase class I family protein	Q8HA86	Salmonella_phage	3.2e-108	93.1
AXR59123.1\|2938585_2938867_-	hypothetical protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
AXR56408.1\|2938853_2939198_-	putative membrane protein	G8C7V8	Escherichia_phage	2.6e-35	67.3
AXR55773.1\|2940568_2941366_-	antitermination family protein	A0A0M4S661	Salmonella_phage	3.4e-150	99.2
AXR57118.1\|2941498_2941864_-	bacteriophage Lambda NinG family protein	A0A0M4RU10	Salmonella_phage	8.4e-64	98.3
AXR56010.1\|2941873_2942101_+	hypothetical protein	NA	NA	NA	NA
AXR58961.1\|2942112_2942319_-	hypothetical protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
AXR56201.1\|2942318_2942921_-	hypothetical protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
AXR58946.1\|2943255_2943495_-	DNA-damage-inducible protein I	H6WRY5	Salmonella_phage	3.9e-38	100.0
AXR57499.1\|2943679_2944177_-	death-on-curing family protein	NA	NA	NA	NA
AXR58558.1\|2944852_2945008_-	putative bacteriophage protein	S4TNF2	Salmonella_phage	4.7e-24	98.0
AXR55887.1\|2945263_2945785_-	hypothetical protein	S4TSR6	Salmonella_phage	1.2e-66	68.0
AXR54665.1\|2945788_2946262_-	methyltransferase domain protein	H9C170	Pectobacterium_phage	1.6e-67	80.1
AXR55029.1\|2946261_2946786_-	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	1.8e-91	99.4
AXR54834.1\|2946782_2947100_-	hypothetical protein	H6WRX9	Salmonella_phage	8.1e-47	89.5
AXR57942.1\|2947140_2947890_-	istB-like ATP binding family protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
AXR56942.1\|2947892_2948807_-	phage replication protein O, N-terminal domain	H6WRX7	Salmonella_phage	2.0e-162	99.7
AXR57510.1\|2948960_2949110_-	putative gifsy-1 prophage cI protein	H6WRX6	Salmonella_phage	2.0e-19	100.0
AXR57805.1\|2950410_2950560_+	hypothetical protein	G8C7T2	Escherichia_phage	8.5e-07	47.9
AXR57925.1\|2950650_2950947_+	host-nuclease inhibitor Gam family protein	A0A0M5M5Z9	Salmonella_phage	4.4e-47	96.9
AXR56181.1\|2950952_2951738_+	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	9.7e-150	99.6
AXR57467.1\|2951734_2952415_+	exonuclease	A0A0M3ULE0	Salmonella_phage	1.9e-130	98.7
AXR57694.1\|2952492_2953557_+	DGQHR domain protein	T1SBJ4	Salmonella_phage	6.3e-152	74.6
AXR54699.1\|2953589_2954435_+	DNA adenine methylase family protein	A0A0M4R347	Salmonella_phage	1.3e-152	93.2
AXR56596.1\|2954437_2954680_+	hypothetical protein	S4TR31	Salmonella_phage	9.9e-37	96.2
AXR56344.1\|2954720_2954969_+	hypothetical protein	S4TND0	Salmonella_phage	4.7e-42	100.0
AXR59083.1\|2955013_2956306_+\|integrase	phage integrase family protein	S4TSP2	Salmonella_phage	5.0e-252	99.8
2956341:2956355	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3027571 : 3034745

Ralstonia_phage(16.67%)

integrase,protease

attL 3022301:3022315|attR 3033481:3033495

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3022301:3022315	attL	NA	NA	NA	NA
AXR55789.1\|3027571_3027811_+\|integrase	phage integrase domain protein	A0A077KET4	Ralstonia_phage	2.3e-14	45.6
AXR57766.1\|3028153_3028270_-	hypothetical protein	NA	NA	NA	NA
AXR56076.1\|3028381_3030658_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.8e-164	42.2
AXR56348.1\|3030688_3031009_-\|protease	ATP-dependent Clp protease adaptor ClpS family protein	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AXR57496.1\|3031332_3031554_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AXR55605.1\|3031508_3031652_-	hypothetical protein	NA	NA	NA	NA
AXR58836.1\|3031683_3033630_-	macrolide export ATP-binding/permease protein MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
3033481:3033495	attR	NA	NA	NA	NA
AXR56494.1\|3033626_3034745_-	macrolide-specific efflux protein MacA	A0A140XAI1	Dickeya_phage	8.1e-09	39.8

DBSCAN-SWA_11

3718390 : 3743515

Enterobacteria_phage(38.89%)

tail,capsid,integrase

attL 3711541:3711556|attR 3722898:3722913

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3711541:3711556	attL	NA	NA	NA	NA
AXR56107.1\|3718390_3719590_+\|integrase	prophage CP4-57 integrase	A0A1B5FPC6	Escherichia_phage	4.8e-108	50.6
AXR55085.1\|3719624_3720176_-	hypothetical protein	NA	NA	NA	NA
AXR59001.1\|3720367_3721189_-	hypothetical protein	NA	NA	NA	NA
AXR58490.1\|3721508_3722081_-	polarity suppression protein	Q7M2A1	Enterobacteria_phage	2.2e-95	97.3
AXR56548.1\|3722154_3722295_-	putative transactivation protein	NA	NA	NA	NA
AXR55303.1\|3722651_3723386_-\|capsid	putative glyco3, capsid size determination protein Sid	Q7M2A2	Enterobacteria_phage	1.2e-130	99.2
3722898:3722913	attR	NA	NA	NA	NA
AXR58583.1\|3723985_3724204_+	helix-turn-helix domain protein	Q7M299	Enterobacteria_phage	2.6e-36	98.6
AXR56200.1\|3724200_3724791_+	ash family protein	Q7M2A7	Enterobacteria_phage	5.3e-60	90.3
AXR59179.1\|3724783_3725071_+	putative derepression protein	Q7M2A0	Enterobacteria_phage	8.6e-48	97.9
AXR55258.1\|3725063_3725519_+	hypothetical protein	Q7M298	Enterobacteria_phage	1.6e-64	99.1
AXR57849.1\|3725654_3725975_+	hypothetical protein	NA	NA	NA	NA
AXR55080.1\|3725989_3728323_+	putative P4-specific DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	99.0
AXR57324.1\|3728576_3728756_+	hypothetical protein	NA	NA	NA	NA
AXR57099.1\|3728946_3729252_-	reverse transcriptase family protein	NA	NA	NA	NA
AXR55983.1\|3730123_3730342_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	1.9e-18	71.9
AXR57211.1\|3730432_3731533_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
AXR58774.1\|3731529_3732015_-	phage P2 GpU family protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
AXR56838.1\|3732011_3735089_-\|tail	phage tail tape measure protein, TP901 family, core region	E5G6Q1	Salmonella_phage	0.0e+00	63.1
AXR59266.1\|3735081_3735201_-	phage P2 GpE family protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
AXR58281.1\|3735215_3735518_-	mu-like prophage FluMu gp41 family protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
AXR55690.1\|3735572_3736088_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
AXR59199.1\|3736097_3737270_-\|tail	phage tail sheath family protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
AXR55417.1\|3737412_3737979_-	resolvase, N terminal domain protein	A0A0F7LA37	Escherichia_phage	1.1e-86	86.3
AXR54516.1\|3738241_3738409_+	hypothetical protein	NA	NA	NA	NA
AXR56984.1\|3738662_3739778_+	UDP-glucoronosyl and UDP-glucosyl transferase family protein	NA	NA	NA	NA
AXR58817.1\|3739858_3743515_+	lipid A export permease/ATP-binding protein MsbA	W8CYL7	Bacillus_phage	1.0e-44	28.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP023975

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection