CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP023468	Salmonella enterica subsp. enterica strain BAA-1586 chromosome, complete genome	2 crisprs	cas3,DEDDh,csa3,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	0	6	9	0
CP023469	Salmonella enterica subsp. enterica strain BAA-1586 plasmid pSalMiami, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP023468_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023468_1

2942289-2942561

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
GGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
GGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

4 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP023468_1

>merge|CP023468|1|2942289-2942561|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGACGCGGGGAACACTTTTTAGAGGTGTACACACCGTCGGCCTTTTGCGGTTTATCCCCGCTGGCGCGGGGAACACAAGATACGCTCAACCTAGCTCTTACTCAACTACGGTTTATCCCCGCTGGCGCGGGGAACACGCGTTTGATATAGATTTCCGTGAACGCCTCGCTGGTTTATCCCCGCTGGCGCGGGGAACACTTCGTCGCACGAAACGACGGAACGATCGCGCTCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP023468|1|1|2942289-2942561|CRISPRCasFinder
GTGTTTATCCCCGCTGACGCGGGGAACAC	TTTTTAGAGGTGTACACACCGTCGGCCTTTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAGATACGCTCAACCTAGCTCTTACTCAACTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGTTTGATATAGATTTCCGTGAACGCCTCGC
TGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCGTCGCACGAAACGACGGAACGATCGCGCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP023468|1|1|2942290-2942561|CRT
TGTTTATCCCCGCTGACGCGGGGAACAC	TTTTTAGAGGTGTACACACCGTCGGCCTTTTGC
GGTTTATCCCCGCTGGCGCGGGGAACAC	AAGATACGCTCAACCTAGCTCTTACTCAACTAC
GGTTTATCCCCGCTGGCGCGGGGAACAC	GCGTTTGATATAGATTTCCGTGAACGCCTCGCT
GGTTTATCCCCGCTGGCGCGGGGAACAC	TTCGTCGCACGAAACGACGGAACGATCGCGCTC
GGTTTATCCCCGCTGGCGCGGGGAACAC

>CP023468|1|1|2942291-2942561|PILER-CR
GTTTATCCCCGCTGACGCGGGGAACACT	TTTTAGAGGTGTACACACCGTCGGCCTTTTGCG
GTTTATCCCCGCTGGCGCGGGGAACACA	AGATACGCTCAACCTAGCTCTTACTCAACTACG
GTTTATCCCCGCTGGCGCGGGGAACACG	CGTTTGATATAGATTTCCGTGAACGCCTCGCTG
GTTTATCCCCGCTGGCGCGGGGAACACT	TCGTCGCACGAAACGACGGAACGATCGCGCTCG
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP023468.1\|AXR34894.1\|2936422_2937133_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP023468.1\|AXR34906.1\|2946328_2946889_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP023468.1\|AXR34910.1\|2952602_2953337_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP023468.1\|AXR34904.1\|2944499_2945246_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP023468.1\|AXR34907.1\|2946885_2948442_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP023468.1\|AXR34909.1\|2951561_2952515_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP023468.1\|AXR34899.1\|2940068_2940977_-\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP023468.1\|AXR34908.1\|2948453_2951117_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP023468.1\|AXR34901.1\|2942657_2942951_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP023468.1\|AXR34895.1\|2937151_2937463_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP023468.1\|AXR34897.1\|2938027_2938633_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP023468.1\|AXR34896.1\|2937653_2938010_-\|DUF3561-domain-containing-protein	unknown	unknown	gnl\|CDD\|371891
CP023468.1\|AXR34905.1\|2945256_2946315_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP023468.1\|AXR34900.1\|2941227_2942274_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP023468.1\|AXR34892.1\|2934897_2935947_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP023468.1\|AXR34891.1\|2934155_2934917_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP023468.1\|AXR34902.1\|2942950_2943871_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP023468.1\|AXR34903.1\|2943867_2944518_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP023468.1\|AXR34893.1\|2935943_2936423_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP023468.1\|AXR34898.1\|2938619_2940059_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349

Protein	Function_ID	Function_description	E-value
CP023468.1\|AXR34894.1\|2936422_2937133_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
CP023468.1\|AXR34906.1\|2946328_2946889_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.90448e-33
CP023468.1\|AXR34910.1\|2952602_2953337_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.30149e-138
CP023468.1\|AXR34904.1\|2944499_2945246_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.08396e-48
CP023468.1\|AXR34907.1\|2946885_2948442_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP023468.1\|AXR34909.1\|2951561_2952515_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP023468.1\|AXR34899.1\|2940068_2940977_-\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP023468.1\|AXR34908.1\|2948453_2951117_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP023468.1\|AXR34901.1\|2942657_2942951_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
CP023468.1\|AXR34895.1\|2937151_2937463_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP023468.1\|AXR34897.1\|2938027_2938633_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP023468.1\|AXR34896.1\|2937653_2938010_-\|DUF3561-domain-containing-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP023468.1\|AXR34905.1\|2945256_2946315_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.4863e-133
CP023468.1\|AXR34900.1\|2941227_2942274_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP023468.1\|AXR34892.1\|2934897_2935947_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP023468.1\|AXR34891.1\|2934155_2934917_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP023468.1\|AXR34902.1\|2942950_2943871_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
CP023468.1\|AXR34903.1\|2943867_2944518_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.41953e-75
CP023468.1\|AXR34893.1\|2935943_2936423_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP023468.1\|AXR34898.1\|2938619_2940059_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0

>CP023468.1|AXR34900.1|2941227_2942274_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPEPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELATRLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP023468.1|AXR34899.1|2940068_2940977_-|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP023468.1|AXR34898.1|2938619_2940059_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQREVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWGARDLLGDKHGAA
>CP023468.1|AXR34897.1|2938027_2938633_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP023468.1|AXR34896.1|2937653_2938010_-|DUF3561-domain-containing-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP023468.1|AXR34895.1|2937151_2937463_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP023468.1|AXR34894.1|2936422_2937133_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP023468.1|AXR34893.1|2935943_2936423_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP023468.1|AXR34892.1|2934897_2935947_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNVQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP023468.1|AXR34891.1|2934155_2934917_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>CP023468.1|AXR34901.1|2942657_2942951_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP023468.1|AXR34902.1|2942950_2943871_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP023468.1|AXR34903.1|2943867_2944518_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLVRQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINDPALFLQRLAQGYGKSRAFGCGMMMIKPGEDA
>CP023468.1|AXR34904.1|2944499_2945246_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGRAPDALREAYRQYQDKFNALRLPLPKLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLSKEDACISQE
>CP023468.1|AXR34905.1|2945256_2946315_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPASNLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILIESGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTANFDVMNQQGSMKDVLDFICA
>CP023468.1|AXR34906.1|2946328_2946889_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKAAWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKTPDELLRQLRRAVQLLDGSVNLISLAEDIFRWCQEQDDLLSHHRRQQRPTEFLRIRWALEYYQAGDGDIDNEQD
>CP023468.1|AXR34907.1|2946885_2948442_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEPLTGEKVSIASLLPEIPGAQTTKFNKDHFIKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDVADLPLSDQCDAAVFPWLAATRTSEQANAVTTPDQVDKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNHTEANYESPAQVVKVFNARRLRDVKAGVWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>CP023468.1|AXR34908.1|2948453_2951117_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGEIDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPESWDEDEGIDQFQQLSWFISAAVVLTDWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQLDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQKGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKGEFERLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP023468.1|AXR34909.1|2951561_2952515_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>CP023468.1|AXR34910.1|2952602_2953337_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNVQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: CP023468_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023468_2

2958707-2959407

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

11 spacers

cas3,cas8e,cse2gr11

The CRISPR arrays of CP023468_2

>merge|CP023468|2|2958707-2959407|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACCAAAAATCGTTGCGCCAGTGGAAATGGTATGGCGGTTTATCCCCGCTGACGCGGGGAACACTGTTGAGTTGTACGCGGTGGCAACTGTAGGGGCGGTTTATCCCCGCTGGCGCGGGGAACACCCGCTCCCTCCCAATAACCCCATATTTGACCCCGGTTTATCCCCGCTGGCGCGGGGAACACTTCCCTGGTGCTGAGTGATGGATATTGCCGCCCGGTTTATCCCCGCTGGCGCGGGGAACACTCCCCGGAGCGAATCCGATAGTAGCGTCCTCCCGGTTTATCCCCGCTGGCGCGGGGAACACGATCCGGTATATCGCGGTGATCCGAGCTATGAGCGGTTTATCCCCGCTGGCGCGGGGAACACGTTATGATTTGTATTGTAATATAATTAACGAACGGTTTATCCCCGCTGGCGCGGGGAACACCGTGTAAAAGGCAAAACTCCCCAGATACCGCGCGGTTTATCCCCGCTGGCGCGGGGAACACTGGTCTTTGCCTTGCAGGCATATGACGCTCTTCGGTTTATCCCCGCTAGCGCGGGGAACACCTGACGAGCGGCACCTTTGGCCCCACTTCTTCCGGTTTATCCCCGCTGGCGCGGGGAACACTTTTACGCACCCCTCGCCAAATGAGATCACACCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP023468|2|2|2958707-2959407|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	CAAAAATCGTTGCGCCAGTGGAAATGGTATGG
CGGTTTATCCCCGCTGACGCGGGGAACAC	TGTTGAGTTGTACGCGGTGGCAACTGTAGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGCTCCCTCCCAATAACCCCATATTTGACCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCCCTGGTGCTGAGTGATGGATATTGCCGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCCGGAGCGAATCCGATAGTAGCGTCCTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATCCGGTATATCGCGGTGATCCGAGCTATGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTATGATTTGTATTGTAATATAATTAACGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTGTAAAAGGCAAAACTCCCCAGATACCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGTCTTTGCCTTGCAGGCATATGACGCTCTT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CTGACGAGCGGCACCTTTGGCCCCACTTCTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTACGCACCCCTCGCCAAATGAGATCACAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP023468|2|2|2958707-2959407|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	CAAAAATCGTTGCGCCAGTGGAAATGGTATGG
CGGTTTATCCCCGCTGACGCGGGGAACAC	TGTTGAGTTGTACGCGGTGGCAACTGTAGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGCTCCCTCCCAATAACCCCATATTTGACCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCCCTGGTGCTGAGTGATGGATATTGCCGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCCGGAGCGAATCCGATAGTAGCGTCCTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATCCGGTATATCGCGGTGATCCGAGCTATGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTATGATTTGTATTGTAATATAATTAACGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTGTAAAAGGCAAAACTCCCCAGATACCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGTCTTTGCCTTGCAGGCATATGACGCTCTT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CTGACGAGCGGCACCTTTGGCCCCACTTCTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTACGCACCCCTCGCCAAATGAGATCACAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP023468|2|2|2958768-2959407|PILER-CR
CGGTTTATCCCCGCTGACGCGGGGAACAC	TGTTGAGTTGTACGCGGTGGCAACTGTAGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGCTCCCTCCCAATAACCCCATATTTGACCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCCCTGGTGCTGAGTGATGGATATTGCCGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCCGGAGCGAATCCGATAGTAGCGTCCTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATCCGGTATATCGCGGTGATCCGAGCTATGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTATGATTTGTATTGTAATATAATTAACGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTGTAAAAGGCAAAACTCCCCAGATACCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGTCTTTGCCTTGCAGGCATATGACGCTCTT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CTGACGAGCGGCACCTTTGGCCCCACTTCTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTACGCACCCCTCGCCAAATGAGATCACAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP023468.1\|AXR34916.1\|2960510_2961809_-\|enolase	unknown	unknown	gnl\|CDD\|234617
CP023468.1\|AXR34906.1\|2946328_2946889_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP023468.1\|AXR34911.1\|2953412_2955125_-\|NADPH-dependent-assimilatory-sulfite-reductase-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP023468.1\|AXR34913.1\|2957359_2957722_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP023468.1\|AXR34921.1\|2966015_2968250_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
CP023468.1\|AXR34918.1\|2963756_2964557_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP023468.1\|AXR34920.1\|2965574_2965931_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
CP023468.1\|AXR34912.1\|2955124_2956924_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP023468.1\|AXR34908.1\|2948453_2951117_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP023468.1\|AXR34910.1\|2952602_2953337_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP023468.1\|AXR34919.1\|2965312_2965609_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
CP023468.1\|AXR34924.1\|2972454_2973597_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
CP023468.1\|AXR34909.1\|2951561_2952515_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP023468.1\|AXR36518.1\|2957260_2957431_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP023468.1\|AXR34914.1\|2957811_2958609_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP023468.1\|AXR34915.1\|2959703_2960375_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP023468.1\|AXR34917.1\|2961891_2963529_-\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP023468.1\|AXR34907.1\|2946885_2948442_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP023468.1\|AXR34923.1\|2969654_2972411_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
CP023468.1\|AXR34922.1\|2968301_2969597_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291

Protein	Function_ID	Function_description	E-value
CP023468.1\|AXR34916.1\|2960510_2961809_-\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP023468.1\|AXR34906.1\|2946328_2946889_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.90448e-33
CP023468.1\|AXR34911.1\|2953412_2955125_-\|NADPH-dependent-assimilatory-sulfite-reductase-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP023468.1\|AXR34913.1\|2957359_2957722_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP023468.1\|AXR34921.1\|2966015_2968250_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP023468.1\|AXR34918.1\|2963756_2964557_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
CP023468.1\|AXR34920.1\|2965574_2965931_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
CP023468.1\|AXR34912.1\|2955124_2956924_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP023468.1\|AXR34908.1\|2948453_2951117_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP023468.1\|AXR34910.1\|2952602_2953337_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.30149e-138
CP023468.1\|AXR34919.1\|2965312_2965609_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	4.79136e-12
CP023468.1\|AXR34924.1\|2972454_2973597_-\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
CP023468.1\|AXR34909.1\|2951561_2952515_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP023468.1\|AXR34914.1\|2957811_2958609_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.81886e-102
CP023468.1\|AXR34915.1\|2959703_2960375_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
CP023468.1\|AXR34917.1\|2961891_2963529_-\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP023468.1\|AXR34907.1\|2946885_2948442_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP023468.1\|AXR34923.1\|2969654_2972411_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP023468.1\|AXR34922.1\|2968301_2969597_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0

>CP023468.1|AXR34914.1|2957811_2958609_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP023468.1|AXR34913.1|2957359_2957722_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP023468.1|AXR36518.1|2957260_2957431_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP023468.1|AXR34912.1|2955124_2956924_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMLGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQQYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>CP023468.1|AXR34911.1|2953412_2955125_-|NADPH-dependent-assimilatory-sulfite-reductase-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP023468.1|AXR34910.1|2952602_2953337_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNVQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP023468.1|AXR34909.1|2951561_2952515_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>CP023468.1|AXR34908.1|2948453_2951117_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGEIDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPESWDEDEGIDQFQQLSWFISAAVVLTDWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQLDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQKGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKGEFERLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP023468.1|AXR34907.1|2946885_2948442_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEPLTGEKVSIASLLPEIPGAQTTKFNKDHFIKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDVADLPLSDQCDAAVFPWLAATRTSEQANAVTTPDQVDKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNHTEANYESPAQVVKVFNARRLRDVKAGVWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>CP023468.1|AXR34906.1|2946328_2946889_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKAAWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKTPDELLRQLRRAVQLLDGSVNLISLAEDIFRWCQEQDDLLSHHRRQQRPTEFLRIRWALEYYQAGDGDIDNEQD
>CP023468.1|AXR34915.1|2959703_2960375_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP023468.1|AXR34916.1|2960510_2961809_-|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP023468.1|AXR34917.1|2961891_2963529_-|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>CP023468.1|AXR34918.1|2963756_2964557_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP023468.1|AXR34919.1|2965312_2965609_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRTVKLTPKASEDLENIWHYGWLYFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>CP023468.1|AXR34920.1|2965574_2965931_-|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>CP023468.1|AXR34921.1|2966015_2968250_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>CP023468.1|AXR34922.1|2968301_2969597_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEVVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>CP023468.1|AXR34923.1|2969654_2972411_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>CP023468.1|AXR34924.1|2972454_2973597_-|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIVQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVGVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP023468_2	2.10\|2959286\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959286-2959317	32	NZ_LR134256	Klebsiella aerogenes strain NCTC9644 plasmid 3, complete sequence	9135-9166	0	1.0
CP023468_2	2.10\|2959286\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959286-2959317	32	MK714353	Klebsiella phage ST13-OXA48phi12.5, complete genome	2957-2988	0	1.0
CP023468_2	2.10\|2959286\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959286-2959317	32	MK448231	Klebsiella phage ST101-KPC2phi6.1, complete genome	2774-2805	0	1.0
CP023468_2	2.10\|2959286\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959286-2959317	32	KY271395	Klebsiella phage 2b LV-2017, complete genome	3097-3128	1	0.969
CP023468_2	2.10\|2959286\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959286-2959317	32	KY271396	Klebsiella phage 2 LV-2017, complete genome	40429-40460	1	0.969
CP023468_2	2.10\|2959286\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959286-2959317	32	NC_004775	Enterobacteria phage epsilon15, complete genome	34302-34333	1	0.969
CP023468_2	2.10\|2959286\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959286-2959317	32	KY006853	Erythrobacter phage vB_EliS_R6L, complete genome	27922-27953	5	0.844
CP023468_2	2.10\|2959286\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959286-2959317	32	MN693601	Marine virus AFVG_25M543, complete genome	6198-6229	5	0.844
CP023468_1	1.3\|2942440\|32\|CP023468\|CRISPRCasFinder	2942440-2942471	32	MN693128	Marine virus AFVG_25M106, complete genome	1551-1582	6	0.812
CP023468_2	2.7\|2959103\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959103-2959134	32	NZ_LR735422	Staphylococcus epidermidis strain none isolate Se_BPH0697 plasmid 2	56005-56036	6	0.812
CP023468_1	1.7\|2942440\|33\|CP023468\|CRT	2942440-2942472	33	MN693128	Marine virus AFVG_25M106, complete genome	1550-1582	7	0.788
CP023468_1	1.11\|2942441\|33\|CP023468\|PILER-CR	2942441-2942473	33	MN693128	Marine virus AFVG_25M106, complete genome	1550-1582	7	0.788
CP023468_2	2.7\|2959103\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959103-2959134	32	NZ_CP027420	Staphylococcus cohnii strain FDAARGOS_334 plasmid unnamed1, complete sequence	32810-32841	7	0.781
CP023468_2	2.7\|2959103\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959103-2959134	32	NZ_CP015644	Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence	38951-38982	7	0.781
CP023468_2	2.7\|2959103\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959103-2959134	32	NZ_CP015644	Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence	58080-58111	7	0.781
CP023468_2	2.7\|2959103\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959103-2959134	32	NZ_CP017431	Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence	126493-126524	7	0.781
CP023468_2	2.7\|2959103\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959103-2959134	32	NZ_CP017431	Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence	145627-145658	7	0.781
CP023468_2	2.7\|2959103\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959103-2959134	32	NZ_CP017429	Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence	2082-2113	7	0.781
CP023468_2	2.7\|2959103\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959103-2959134	32	NZ_CP017429	Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence	21216-21247	7	0.781
CP023468_2	2.7\|2959103\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959103-2959134	32	NZ_CP016158	Staphylococcus simulans strain MR2 plasmid unnamed1	1228-1259	7	0.781
CP023468_2	2.7\|2959103\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959103-2959134	32	NZ_CP016158	Staphylococcus simulans strain MR2 plasmid unnamed1	20361-20392	7	0.781
CP023468_2	2.7\|2959103\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959103-2959134	32	AP013557	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S41-C64, * SEQUENCING IN PROGRESS *, 3 ordered pieces	12405-12436	7	0.781
CP023468_2	2.7\|2959103\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959103-2959134	32	KC465898	Pelagibacter phage HTVC010P, complete genome	26694-26725	7	0.781
CP023468_2	2.7\|2959103\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959103-2959134	32	AP013554	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S23-C36, * SEQUENCING IN PROGRESS *, 7 ordered pieces	14467-14498	7	0.781
CP023468_2	2.7\|2959103\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959103-2959134	32	AP013556	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S32-C64, * SEQUENCING IN PROGRESS *, 6 ordered pieces	21938-21969	7	0.781
CP023468_2	2.10\|2959286\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959286-2959317	32	NC_005887	Burkholderia phage BcepC6B, complete genome	32231-32262	7	0.781
CP023468_2	2.10\|2959286\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959286-2959317	32	AY605181	Burkholderia cepacia complex phage BcepC6B, complete genome	32231-32262	7	0.781
CP023468_2	2.2\|2958797\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2958797-2958828	32	NC_010850	Rhodococcus sp. NS1 plasmid pNSL1, complete sequence	2319-2350	9	0.719
CP023468_2	2.7\|2959103\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959103-2959134	32	NZ_CP018210	Lactobacillus plantarum strain BLS41 plasmid pLPBLS41_1, complete sequence	16314-16345	9	0.719
CP023468_2	2.7\|2959103\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959103-2959134	32	MN693083	Marine virus AFVG_25M55, complete genome	1394-1425	9	0.719
CP023468_2	2.10\|2959286\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959286-2959317	32	MK972713	Salmonella phage SW5, complete genome	4657-4688	9	0.719
CP023468_2	2.10\|2959286\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959286-2959317	32	MK972714	Salmonella phage SW3, complete genome	4879-4910	9	0.719
CP023468_2	2.10\|2959286\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959286-2959317	32	NC_049460	Salmonella phage SI7, complete genome	25136-25167	9	0.719
CP023468_2	2.7\|2959103\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959103-2959134	32	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	168380-168411	10	0.688
CP023468_2	2.7\|2959103\|32\|CP023468\|CRISPRCasFinder,CRT,PILER-CR	2959103-2959134	32	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	378504-378535	10	0.688

1. spacer 2.10|2959286|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134256 (Klebsiella aerogenes strain NCTC9644 plasmid 3, complete sequence) position: , mismatch: 0, identity: 1.0

ctgacgagcggcacctttggccccacttcttc	CRISPR spacer
ctgacgagcggcacctttggccccacttcttc	Protospacer
********************************

2. spacer 2.10|2959286|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to MK714353 (Klebsiella phage ST13-OXA48phi12.5, complete genome) position: , mismatch: 0, identity: 1.0

ctgacgagcggcacctttggccccacttcttc	CRISPR spacer
ctgacgagcggcacctttggccccacttcttc	Protospacer
********************************

3. spacer 2.10|2959286|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 0, identity: 1.0

ctgacgagcggcacctttggccccacttcttc	CRISPR spacer
ctgacgagcggcacctttggccccacttcttc	Protospacer
********************************

4. spacer 2.10|2959286|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to KY271395 (Klebsiella phage 2b LV-2017, complete genome) position: , mismatch: 1, identity: 0.969

ctgacgagcggcacctttggccccacttcttc	CRISPR spacer
ctgacgagcggcacctttggcctcacttcttc	Protospacer
**********************.*********

5. spacer 2.10|2959286|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to KY271396 (Klebsiella phage 2 LV-2017, complete genome) position: , mismatch: 1, identity: 0.969

ctgacgagcggcacctttggccccacttcttc	CRISPR spacer
ctgacgagcggcacctttggccccagttcttc	Protospacer
************************* ******

6. spacer 2.10|2959286|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to NC_004775 (Enterobacteria phage epsilon15, complete genome) position: , mismatch: 1, identity: 0.969

ctgacgagcggcacctttggccccacttcttc	CRISPR spacer
ctgacgagcggcacctttggccacacttcttc	Protospacer
********************** *********

7. spacer 2.10|2959286|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to KY006853 (Erythrobacter phage vB_EliS_R6L, complete genome) position: , mismatch: 5, identity: 0.844

ctgacgagcggcacctttggccccacttcttc	CRISPR spacer
ctgacgagcggcacctttggccgcactggcac	Protospacer
********************** ****  . *

8. spacer 2.10|2959286|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to MN693601 (Marine virus AFVG_25M543, complete genome) position: , mismatch: 5, identity: 0.844

ctgacgagcggcacctttggccccacttcttc	CRISPR spacer
ctgacgagcggcacctctggccgcactggttt	Protospacer
****************.***** ****  **.

9. spacer 1.3|2942440|32|CP023468|CRISPRCasFinder matches to MN693128 (Marine virus AFVG_25M106, complete genome) position: , mismatch: 6, identity: 0.812

gcgtttga---tatagatttccgtgaacgcctcgc	CRISPR spacer
---cctgaaagtatagatttccgtgaacgcttcgc	Protospacer
   ..***   *******************.****

10. spacer 2.7|2959103|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR735422 (Staphylococcus epidermidis strain none isolate Se_BPH0697 plasmid 2) position: , mismatch: 6, identity: 0.812

gttatgatttgtattgtaatataa--ttaacgaa	CRISPR spacer
attatgatttgtttagtaatataaggttaaca--	Protospacer
.*********** * *********  *****.

11. spacer 1.7|2942440|33|CP023468|CRT matches to MN693128 (Marine virus AFVG_25M106, complete genome) position: , mismatch: 7, identity: 0.788

gcgtttga---tatagatttccgtgaacgcctcgct	CRISPR spacer
---cctgaaagtatagatttccgtgaacgcttcgcg	Protospacer
   ..***   *******************.****

12. spacer 1.11|2942441|33|CP023468|PILER-CR matches to MN693128 (Marine virus AFVG_25M106, complete genome) position: , mismatch: 7, identity: 0.788

gcgtttga---tatagatttccgtgaacgcctcgct	CRISPR spacer
---cctgaaagtatagatttccgtgaacgcttcgcg	Protospacer
   ..***   *******************.****

13. spacer 2.7|2959103|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027420 (Staphylococcus cohnii strain FDAARGOS_334 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gttatgatttgtattgtaatataattaacgaa	CRISPR spacer
attatgatttttattgtaatatatttcattat	Protospacer
.********* ************ ** *. *

14. spacer 2.7|2959103|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015644 (Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

gttatgatttgtattgtaatataattaacgaa	CRISPR spacer
attatgatttttattgtaatatatttcattat	Protospacer
.********* ************ ** *. *

15. spacer 2.7|2959103|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015644 (Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

gttatgatttgtattgtaatataattaacgaa	CRISPR spacer
attatgatttttattgtaatatatttcattat	Protospacer
.********* ************ ** *. *

16. spacer 2.7|2959103|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017431 (Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

gttatgatttgtattgtaatataattaacgaa	CRISPR spacer
attatgatttttattgtaatatatttcattat	Protospacer
.********* ************ ** *. *

17. spacer 2.7|2959103|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017431 (Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

gttatgatttgtattgtaatataattaacgaa	CRISPR spacer
attatgatttttattgtaatatatttcattat	Protospacer
.********* ************ ** *. *

18. spacer 2.7|2959103|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017429 (Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.781

gttatgatttgtattgtaatataattaacgaa	CRISPR spacer
attatgatttttattgtaatatatttcattat	Protospacer
.********* ************ ** *. *

19. spacer 2.7|2959103|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017429 (Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.781

gttatgatttgtattgtaatataattaacgaa	CRISPR spacer
attatgatttttattgtaatatatttcattat	Protospacer
.********* ************ ** *. *

20. spacer 2.7|2959103|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016158 (Staphylococcus simulans strain MR2 plasmid unnamed1) position: , mismatch: 7, identity: 0.781

gttatgatttgtattgtaatataattaacgaa	CRISPR spacer
attatgatttttattgtaatatatttcattat	Protospacer
.********* ************ ** *. *

21. spacer 2.7|2959103|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016158 (Staphylococcus simulans strain MR2 plasmid unnamed1) position: , mismatch: 7, identity: 0.781

gttatgatttgtattgtaatataattaacgaa	CRISPR spacer
attatgatttttattgtaatatatttcattat	Protospacer
.********* ************ ** *. *

22. spacer 2.7|2959103|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to AP013557 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S41-C64, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces) position: , mismatch: 7, identity: 0.781

gttatgatttgtattgtaatataattaacgaa	CRISPR spacer
gttttgatctgtattgtaatataaaattagaa	Protospacer
*** ****.***************     ***

23. spacer 2.7|2959103|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to KC465898 (Pelagibacter phage HTVC010P, complete genome) position: , mismatch: 7, identity: 0.781

gttatgatttgtattgtaatataattaacgaa	CRISPR spacer
gttttgatctgtattgtaatataaaattagaa	Protospacer
*** ****.***************     ***

24. spacer 2.7|2959103|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to AP013554 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S23-C36, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces) position: , mismatch: 7, identity: 0.781

gttatgatttgtattgtaatataattaacgaa	CRISPR spacer
gttttgatctgtattgtaatataaaactagaa	Protospacer
*** ****.***************     ***

25. spacer 2.7|2959103|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to AP013556 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S32-C64, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces) position: , mismatch: 7, identity: 0.781

gttatgatttgtattgtaatataattaacgaa	CRISPR spacer
gttttgatctgtattgtaatataaaattagaa	Protospacer
*** ****.***************     ***

26. spacer 2.10|2959286|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to NC_005887 (Burkholderia phage BcepC6B, complete genome) position: , mismatch: 7, identity: 0.781

ctgacgagcggcacctttggccccacttcttc	CRISPR spacer
atgacgagcggcacctctggccgcactggcac	Protospacer
 ***************.***** ****  . *

27. spacer 2.10|2959286|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to AY605181 (Burkholderia cepacia complex phage BcepC6B, complete genome) position: , mismatch: 7, identity: 0.781

ctgacgagcggcacctttggccccacttcttc	CRISPR spacer
atgacgagcggcacctctggccgcactggcac	Protospacer
 ***************.***** ****  . *

28. spacer 2.2|2958797|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to NC_010850 (Rhodococcus sp. NS1 plasmid pNSL1, complete sequence) position: , mismatch: 9, identity: 0.719

tgttgagttgtacgcggtggcaactgtagggg	CRISPR spacer
agcggagttgtacgcggcggcaacagtgctcg	Protospacer
 *. *************.****** **.   *

29. spacer 2.7|2959103|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018210 (Lactobacillus plantarum strain BLS41 plasmid pLPBLS41_1, complete sequence) position: , mismatch: 9, identity: 0.719

gttatgatttgtattgtaatataattaacgaa	CRISPR spacer
tgcatgatttgtagtgtaatttaattcatggt	Protospacer
  .********** ****** ***** *.*.

30. spacer 2.7|2959103|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to MN693083 (Marine virus AFVG_25M55, complete genome) position: , mismatch: 9, identity: 0.719

gttatgatttgtattgtaatataattaacgaa	CRISPR spacer
tctataatttgtattgtaatacaatagagaag	Protospacer
 .***.***************.*** .* .*.

31. spacer 2.10|2959286|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to MK972713 (Salmonella phage SW5, complete genome) position: , mismatch: 9, identity: 0.719

ctgacgagcggcacctttggccccacttcttc	CRISPR spacer
ctgacgagcggcacttatggcccgccatgcat	Protospacer
**************.* ******  * * . .

32. spacer 2.10|2959286|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to MK972714 (Salmonella phage SW3, complete genome) position: , mismatch: 9, identity: 0.719

ctgacgagcggcacctttggccccacttcttc	CRISPR spacer
ctgacgagcggcacttatggcccgccatgcat	Protospacer
**************.* ******  * * . .

33. spacer 2.10|2959286|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to NC_049460 (Salmonella phage SI7, complete genome) position: , mismatch: 9, identity: 0.719

ctgacgagcggcacctttggccccacttcttc	CRISPR spacer
ctgacgagcggcacttatggcccgccatgcat	Protospacer
**************.* ******  * * . .

34. spacer 2.7|2959103|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 10, identity: 0.688

gttatgatttgtattgtaatataattaacgaa	CRISPR spacer
agtatgttttatattgtaatataatatatatt	Protospacer
. **** ***.**************  *..

35. spacer 2.7|2959103|32|CP023468|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 10, identity: 0.688

gttatgatttgtattgtaatataattaacgaa	CRISPR spacer
agtatgttttatattgtaatataatatatatt	Protospacer
. **** ***.**************  *..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

770892 : 780065

Enterobacteria_phage(66.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR32851.1\|770892_771840_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
AXR32852.1\|771823_772555_+	ABC transporter permease	NA	NA	NA	NA
AXR32853.1\|772535_772643_-	hypothetical protein	NA	NA	NA	NA
AXR32854.1\|772702_773434_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AXR32855.1\|773658_775344_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.4e-278	91.1
AXR32856.1\|775340_776060_+	DNA-binding response regulator	NA	NA	NA	NA
AXR32857.1\|776106_776574_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AXR32858.1\|776630_777161_-	DUF1307 domain-containing protein	NA	NA	NA	NA
AXR32859.1\|777332_777791_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	7.6e-54	73.2
AXR32860.1\|778031_780065_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_2

844219 : 854726

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR32914.1\|844219_845623_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.4e-21	26.5
AXR32915.1\|845800_846694_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AXR32916.1\|847070_848156_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AXR32917.1\|848155_849055_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	6.7e-30	36.0
AXR36429.1\|849102_849981_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.7e-108	65.5
AXR32918.1\|849981_850533_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
AXR32919.1\|850538_851513_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
AXR32920.1\|851528_852302_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AXR32921.1\|852306_853386_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	2.3e-16	24.5
AXR32922.1\|853412_854726_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_3

986174 : 993409

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR33028.1\|986174_986594_+	translesion error-prone DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AXR33029.1\|986596_987865_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.4e-227	92.2
AXR33030.1\|988319_988532_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AXR36434.1\|988542_988731_+	cold-shock protein	NA	NA	NA	NA
AXR33031.1\|988990_990169_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.1e-109	57.0
AXR33032.1\|990818_991130_+	hypothetical protein	NA	NA	NA	NA
AXR33033.1\|991209_991905_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.1e-07	28.2
AXR33034.1\|991978_993409_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.5e-105	57.5

DBSCAN-SWA_4

1096227 : 1123966

Escherichia_phage(26.09%)

transposase,terminase,tail,integrase,lysis

attL 1089623:1089637|attR 1110045:1110059

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1089623:1089637	attL	NA	NA	NA	NA
AXR33144.1\|1096227_1096458_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
AXR33145.1\|1096595_1096970_+	hypothetical protein	NA	NA	NA	NA
AXR33146.1\|1096970_1097846_+	hypothetical protein	NA	NA	NA	NA
AXR33147.1\|1097862_1098216_+	DUF2511 domain-containing protein	NA	NA	NA	NA
AXR33148.1\|1098273_1098393_+	hypothetical protein	NA	NA	NA	NA
AXR33149.1\|1098588_1099668_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.3e-100	51.4
AXR33150.1\|1099648_1099921_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.8e-10	39.7
AXR36438.1\|1099981_1100218_-	hypothetical protein	NA	NA	NA	NA
AXR33151.1\|1100508_1100694_-	hypothetical protein	A0A0U2QL97	Escherichia_phage	2.9e-12	59.6
AXR33152.1\|1100740_1101571_-	recombination and repair protein RecT	A0A1P8DTF2	Proteus_phage	1.0e-104	72.0
AXR33153.1\|1101563_1104254_-	exonuclease VIII	Q9QF34	Lambdoid_phage	5.7e-117	83.5
AXR33154.1\|1104394_1104730_-	hypothetical protein	NA	NA	NA	NA
AXR33155.1\|1104805_1105012_-	cell division inhibitor protein	I6PBM9	Cronobacter_phage	3.0e-10	45.6
AXR33156.1\|1105015_1105291_-	hypothetical protein	NA	NA	NA	NA
AXR33157.1\|1105551_1105731_+	hypothetical protein	NA	NA	NA	NA
AXR33158.1\|1105675_1105864_-	hypothetical protein	NA	NA	NA	NA
AXR33159.1\|1106174_1106600_-	transcriptional regulator	K7PH71	Enterobacterial_phage	1.2e-13	56.3
AXR33160.1\|1106696_1106951_+	XRE family transcriptional regulator	K7PKH4	Enterobacteria_phage	1.2e-16	59.4
AXR33161.1\|1106937_1107432_+	hypothetical protein	NA	NA	NA	NA
AXR33162.1\|1107855_1108092_-	hypothetical protein	NA	NA	NA	NA
AXR33163.1\|1108139_1108346_+	hypothetical protein	A0A088CD36	Shigella_phage	3.1e-15	58.0
AXR33164.1\|1108352_1109105_+	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	1.7e-103	76.5
AXR33165.1\|1109122_1109500_+	DNA-binding protein	A0A088CBK9	Shigella_phage	1.7e-14	36.1
AXR33166.1\|1109802_1110309_+	hypothetical protein	NA	NA	NA	NA
1110045:1110059	attR	NA	NA	NA	NA
AXR33167.1\|1111156_1111756_+	DUF1367 domain-containing protein	A0A0U2RT94	Escherichia_phage	3.1e-100	84.9
AXR33168.1\|1111752_1111947_+	hypothetical protein	S4TNP0	Salmonella_phage	1.8e-12	61.5
AXR33169.1\|1111971_1112238_+	hypothetical protein	G8C7V5	Escherichia_phage	4.0e-31	78.6
AXR33170.1\|1112247_1112610_+	antitermination protein	Q777W5	Enterobacteria_phage	1.7e-53	80.0
AXR33171.1\|1112730_1114788_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA
AXR33172.1\|1115145_1115334_+	hypothetical protein	NA	NA	NA	NA
AXR36439.1\|1115537_1115840_+	alpha/beta hydrolase	NA	NA	NA	NA
AXR33173.1\|1115817_1116357_+	lysozyme	S5MQK2	Escherichia_phage	1.3e-76	73.6
AXR36440.1\|1116674_1117130_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	8.0e-56	78.8
AXR33174.1\|1117356_1117758_-	inhibitor of g-type lysozyme	NA	NA	NA	NA
AXR33175.1\|1118044_1118590_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.9e-56	79.9
AXR33176.1\|1118561_1120745_+	hypothetical protein	O64317	Escherichia_phage	1.3e-156	69.1
AXR33177.1\|1120716_1121037_+	hypothetical protein	A0A0M4QWS3	Salmonella_phage	4.9e-44	78.3
AXR33178.1\|1121026_1121611_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	2.2e-82	80.1
AXR33179.1\|1121707_1121908_-	phage virulence factor	NA	NA	NA	NA
AXR33180.1\|1122098_1122215_-\|tail	phage tail protein	NA	NA	NA	NA
AXR33181.1\|1122477_1122603_+	arsenic transporter	NA	NA	NA	NA
AXR33182.1\|1122819_1123966_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.3e-146	92.2

DBSCAN-SWA_5

1770055 : 1774466

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR33808.1\|1770055_1770295_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
AXR33809.1\|1770512_1770713_-	hypothetical protein	NA	NA	NA	NA
AXR36469.1\|1771174_1771984_+	cytolethal distending toxin subunit B	A5LH53	Enterobacteria_phage	2.1e-62	50.0
AXR33810.1\|1772056_1772434_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
AXR33811.1\|1772581_1773124_-	hypothetical protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
AXR33812.1\|1773307_1774036_-	pertussis toxin-like subunit ArtA	A0A0U2KD26	Escherichia_phage	1.6e-61	52.5
AXR33813.1\|1774052_1774466_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	5.5e-19	37.7

DBSCAN-SWA_6

1779654 : 1803016

Salmonella_phage(61.54%)

tail,integrase,holin,transposase

attL 1779602:1779617|attR 1801713:1801728

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1779602:1779617	attL	NA	NA	NA	NA
AXR33817.1\|1779654_1779867_-	isocitrate dehydrogenase	Q77Z09	Phage_21	1.5e-20	92.6
AXR33818.1\|1780120_1780792_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.5e-79	59.9
AXR33819.1\|1781255_1782263_+	non-LEE encoded effector protein NleB	Q8HAB2	Salmonella_phage	1.8e-177	89.3
AXR33820.1\|1782545_1782947_-\|tail	phage tail protein	A0A1B0V844	Salmonella_phage	3.4e-58	83.3
AXR33821.1\|1783272_1784420_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.3e-146	92.2
AXR33822.1\|1784560_1785064_-	hypothetical protein	NA	NA	NA	NA
AXR33823.1\|1785166_1785709_-	hypothetical protein	NA	NA	NA	NA
AXR33824.1\|1785705_1786320_-	endolysin	Q8HA86	Salmonella_phage	1.6e-107	92.2
AXR33825.1\|1786319_1786601_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
AXR33826.1\|1786587_1786977_-	hypothetical protein	K7PHB9	Enterobacterial_phage	8.1e-41	71.8
AXR33827.1\|1787065_1787638_-	hypothetical protein	NA	NA	NA	NA
AXR33828.1\|1787650_1788724_-	hypothetical protein	NA	NA	NA	NA
AXR33829.1\|1788773_1789526_-	antitermination protein	A0A192Y5X6	Salmonella_phage	6.4e-135	92.4
AXR36470.1\|1789539_1790529_-	hypothetical protein	A0A1C9IHZ5	Salmonella_phage	3.4e-192	98.2
AXR33830.1\|1790536_1791442_-	DNA-binding protein	A0A192Y6F8	Salmonella_phage	8.2e-161	99.0
AXR33831.1\|1791413_1791803_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.4e-61	86.0
AXR33832.1\|1791799_1792453_-	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	1.6e-113	88.4
AXR33833.1\|1792452_1792977_-	hypothetical protein	Q8HA95	Salmonella_phage	7.2e-93	97.1
AXR33834.1\|1792936_1793911_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	2.9e-127	84.6
AXR33835.1\|1793907_1794132_-	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
AXR33836.1\|1794128_1795283_-	peptidase	A0A1C9IHV9	Salmonella_phage	3.0e-184	87.5
AXR33837.1\|1795279_1795834_-	hypothetical protein	A0A1C9II13	Salmonella_phage	2.0e-101	99.5
AXR33838.1\|1795862_1796087_-	XRE family transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
AXR33839.1\|1796025_1796211_-	amino acid permease	NA	NA	NA	NA
AXR33840.1\|1796184_1796880_+	transcriptional regulator	Q8HAA0	Salmonella_phage	2.3e-126	99.1
AXR33841.1\|1797088_1797397_+	hypothetical protein	I6PDF6	Cronobacter_phage	5.0e-09	80.0
AXR33842.1\|1797334_1797673_-	hypothetical protein	NA	NA	NA	NA
AXR33843.1\|1798209_1798581_+	hypothetical protein	Q8HAA1	Salmonella_phage	7.2e-63	99.2
AXR33844.1\|1798638_1799466_+	DUF2303 domain-containing protein	Q8HAA2	Salmonella_phage	1.6e-150	98.2
AXR33845.1\|1799601_1800141_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
AXR33846.1\|1800283_1800520_+	excisionase	NA	NA	NA	NA
AXR33847.1\|1800509_1801652_+\|integrase	integrase	O21929	Phage_21	1.2e-172	79.7
AXR33848.1\|1801765_1803016_-	isocitrate dehydrogenase (NADP(+))	Q77Z09	Phage_21	1.1e-19	90.7
1801713:1801728	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2601857 : 2618333

Salmonella_phage(43.48%)

protease,integrase,transposase

attL 2596820:2596833|attR 2625119:2625132

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2596820:2596833	attL	NA	NA	NA	NA
AXR34581.1\|2601857_2603004_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.3e-146	92.2
AXR34582.1\|2603413_2603560_-	hypothetical protein	A0A075B8K7	Enterobacteria_phage	1.5e-19	100.0
AXR34583.1\|2603594_2603876_-	hypothetical protein	Q76H54	Enterobacteria_phage	4.3e-44	100.0
AXR34584.1\|2603986_2604202_-	XRE family transcriptional regulator	A0A0M4RTV8	Salmonella_phage	4.1e-34	100.0
AXR36501.1\|2604320_2604983_+	LexA family transcriptional repressor	A0A0M4QWY1	Salmonella_phage	1.7e-126	100.0
AXR34585.1\|2605337_2605670_+	hypothetical protein	A0A1R3Y5R1	Salmonella_virus	4.8e-50	93.6
AXR34586.1\|2605702_2605903_+	restriction endonuclease	A0A1R3Y5S4	Salmonella_virus	3.0e-31	98.5
AXR34587.1\|2605939_2606563_+	hypothetical protein	K7PKU5	Enterobacteria_phage	2.1e-107	97.1
AXR34588.1\|2606600_2606924_+	hypothetical protein	NA	NA	NA	NA
AXR36502.1\|2607240_2607414_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	I6R987	Salmonella_phage	2.0e-23	98.1
AXR34589.1\|2607394_2607583_+	protein kil	I6S647	Salmonella_phage	3.7e-31	100.0
AXR34590.1\|2607712_2608330_+	recombinase	A0A0N7CFJ3	Salmonella_phage	3.3e-105	100.0
AXR34591.1\|2608329_2608614_+	sigma-70 family RNA polymerase sigma factor	Q76H41	Enterobacteria_phage	2.6e-44	97.9
AXR34592.1\|2608660_2608954_+	RecBCD nuclease inhibitor	A0A0N7CAQ6	Salmonella_phage	4.7e-49	96.9
AXR36503.1\|2608964_2609135_+	DUF2737 domain-containing protein	A0A0N7CAQ8	Salmonella_phage	3.5e-25	100.0
AXR34593.1\|2609583_2609829_+	hypothetical protein	A0A1V0E5L1	Salmonella_phage	7.1e-35	93.7
AXR34594.1\|2610790_2611006_+	hypothetical protein	NA	NA	NA	NA
AXR34595.1\|2611009_2611435_+	HNH endonuclease	C6ZR29	Salmonella_phage	3.0e-65	84.6
AXR34596.1\|2612118_2612298_+	Eag protein	A0A075B8F7	Enterobacteria_phage	1.9e-29	100.0
AXR34597.1\|2612398_2613034_+	Eac protein	A0A075B8I7	Enterobacteria_phage	1.3e-120	99.5
AXR34598.1\|2613036_2613387_+	DNA-binding protein	A0A075B8K2	Enterobacteria_phage	6.4e-61	100.0
AXR36504.1\|2613758_2614427_+\|integrase	site-specific integrase	A0A220NQU7	Salmonella_phage	1.8e-125	97.7
AXR34599.1\|2614632_2615883_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-97	47.7
AXR34600.1\|2615894_2616998_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
AXR34601.1\|2617280_2618333_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.5e-113	58.8
2625119:2625132	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2695494 : 2788680

Salmonella_phage(65.71%)

transposase,tRNA,tail,integrase,plate

attL 2767928:2767944|attR 2798510:2798526

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR34668.1\|2695494_2695989_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AXR34669.1\|2696004_2697888_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AXR34670.1\|2697884_2698880_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AXR34671.1\|2698890_2699946_+	cytoplasmic protein	NA	NA	NA	NA
AXR36511.1\|2700476_2701208_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	9.9e-40	39.0
AXR34672.1\|2701271_2701739_+	ribonuclease HI	J9Q745	Salmonella_phage	4.7e-51	58.9
AXR34673.1\|2701735_2702458_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AXR34674.1\|2702492_2703248_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
AXR34675.1\|2703319_2704687_+	murein transglycosylase D	A0A0A7NU10	Lactobacillus_phage	1.4e-10	33.0
AXR34676.1\|2704742_2705513_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AXR34677.1\|2705590_2706391_-	EEP domain-containing protein	NA	NA	NA	NA
AXR34678.1\|2706522_2707698_-	MFS transporter	NA	NA	NA	NA
AXR34679.1\|2707802_2708774_+	LysR family transcriptional regulator	NA	NA	NA	NA
AXR34680.1\|2708739_2709543_-	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	3.2e-39	35.8
AXR34681.1\|2715108_2715309_+	hypothetical protein	NA	NA	NA	NA
AXR34682.1\|2715504_2718078_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	9.0e-128	35.6
AXR34683.1\|2718207_2718939_-	hypothetical protein	NA	NA	NA	NA
AXR34684.1\|2718935_2719916_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
AXR34685.1\|2720047_2720785_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AXR34686.1\|2721056_2721395_+	ribosomal subunit interface protein	NA	NA	NA	NA
AXR34687.1\|2721645_2722806_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
AXR34688.1\|2722766_2723675_-	gluconolactonase	NA	NA	NA	NA
AXR34689.1\|2723732_2724854_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
AXR34690.1\|2724863_2725934_-	phospho-2-dehydro-3-deoxyheptonate aldolase Tyr-sensitive	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
AXR34691.1\|2726373_2726892_+	DUF4154 domain-containing protein	NA	NA	NA	NA
AXR34692.1\|2726884_2728105_+	diguanylate cyclase	A0A2K8I9Y5	Pseudomonas_phage	1.7e-07	37.0
AXR34693.1\|2728261_2728609_-	50S ribosomal protein L19	NA	NA	NA	NA
AXR34694.1\|2728649_2729417_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AXR34695.1\|2729461_2730010_-	ribosome maturation factor RimM	NA	NA	NA	NA
AXR34696.1\|2730028_2730277_-	30S ribosomal protein S16	NA	NA	NA	NA
AXR34697.1\|2730620_2731982_-	signal recognition particle protein	NA	NA	NA	NA
AXR34698.1\|2732147_2732939_+	inner membrane protein YpjD	NA	NA	NA	NA
AXR34699.1\|2733003_2734245_+	magnesium/cobalt efflux protein	NA	NA	NA	NA
AXR34700.1\|2734365_2734971_+	cytoplasmic protein	NA	NA	NA	NA
AXR34701.1\|2735005_2735596_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
AXR34702.1\|2735592_2735787_-	molecular chaperone GrpE	NA	NA	NA	NA
AXR34703.1\|2735718_2736597_+	NAD(+) kinase	NA	NA	NA	NA
AXR34704.1\|2736682_2738344_+	DNA repair protein RecN	NA	NA	NA	NA
AXR34705.1\|2738492_2738831_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AXR34706.1\|2738991_2739282_-	RnfH family protein	NA	NA	NA	NA
AXR34707.1\|2739271_2739748_-	ubiquinone-binding protein	NA	NA	NA	NA
AXR36512.1\|2739897_2740380_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
AXR34708.1\|2740994_2752469_+	Ig-like domain repeat protein	NA	NA	NA	NA
AXR34709.1\|2752533_2753943_+	type I secretion protein TolC	NA	NA	NA	NA
AXR34710.1\|2753939_2756120_+	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	9.9e-19	34.0
AXR36513.1\|2756127_2757291_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
AXR36514.1\|2757841_2758060_-	levansucrase regulator	Q53ZE7	Salmonella_virus	2.1e-38	100.0
AXR34711.1\|2758128_2759229_-	late control protein D	A0A1S6KZZ5	Salmonella_phage	4.5e-193	98.6
AXR34712.1\|2759225_2759711_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	8.3e-67	99.2
AXR34713.1\|2762506_2762626_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	6.7e-15	97.4
AXR34714.1\|2762640_2762943_-	hypothetical protein	A0A1S6KZZ9	Salmonella_phage	2.3e-43	96.0
AXR34715.1\|2762997_2763513_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	6.7e-91	97.7
AXR34716.1\|2763522_2764695_-\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	4.1e-221	99.0
AXR34717.1\|2764797_2765016_-	Hin recombinase	A0A1S6L009	Salmonella_phage	1.8e-29	90.3
AXR34718.1\|2765230_2765953_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA
AXR34719.1\|2766149_2766557_-\|tail	phage tail protein	A0A1B0V844	Salmonella_phage	2.4e-59	85.0
AXR36515.1\|2766563_2767226_-\|tail	phage tail protein	A0A1B0V7G4	Salmonella_phage	1.2e-39	51.9
AXR34720.1\|2767430_2768003_+	DNA-invertase Hin	A0A0A7NPV4	Enterobacteria_phage	2.0e-67	72.1
2767928:2767944	attL	NA	NA	NA	NA
AXR34721.1\|2768366_2769887_+	flagellin FliC	NA	NA	NA	NA
AXR34722.1\|2769954_2770494_+	phase 1 flagellin gene repressor FljA	NA	NA	NA	NA
AXR34723.1\|2770855_2771053_+	hypothetical protein	NA	NA	NA	NA
AXR34724.1\|2771159_2772185_-\|integrase	integrase	A0A1S6L016	Salmonella_phage	6.4e-202	99.7
AXR34725.1\|2772188_2772821_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	1.1e-116	100.0
AXR34726.1\|2773214_2773724_+	hypothetical protein	A0A1S6L008	Salmonella_phage	6.8e-88	98.8
AXR34727.1\|2773731_2773965_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	3.6e-12	59.1
AXR34728.1\|2773912_2774371_-	hypothetical protein	NA	NA	NA	NA
AXR34729.1\|2774590_2774932_+	hypothetical protein	E5G6L5	Salmonella_phage	4.2e-49	85.0
AXR34730.1\|2774999_2775233_+	hypothetical protein	A0A1S6L021	Salmonella_phage	4.4e-26	83.1
AXR34731.1\|2775232_2775460_+	hypothetical protein	A0A1S6L007	Salmonella_phage	1.3e-35	93.3
AXR34732.1\|2775456_2776314_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	9.3e-130	80.7
AXR34733.1\|2776304_2778713_+	endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	95.3
AXR34734.1\|2778771_2779919_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.3e-146	92.2
AXR34735.1\|2779945_2780539_+\|plate	baseplate assembly protein	A0A1S6KZX7	Salmonella_phage	1.1e-102	96.2
AXR34736.1\|2780535_2780895_+\|plate	baseplate assembly protein	E5G6N7	Salmonella_phage	4.0e-58	95.8
AXR34737.1\|2780881_2781790_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	5.9e-151	94.7
AXR34738.1\|2781782_2782388_+\|tail	phage tail protein I	E5G6N9	Salmonella_phage	1.1e-113	97.5
AXR34739.1\|2783540_2783723_+	hypothetical protein	NA	NA	NA	NA
AXR34740.1\|2783827_2784943_+	glycosyl transferase	NA	NA	NA	NA
AXR34741.1\|2785023_2788680_+	multidrug ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.7e-45	28.8
2798510:2798526	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4501583 : 4507549

uncultured_Caudovirales_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXR36285.1\|4501583_4501826_+	type II toxin-antitoxin system antitoxin, RelB/DinJ family	A0A2H4JBG1	uncultured_Caudovirales_phage	5.6e-16	51.2
AXR36286.1\|4501815_4502100_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	8.6e-32	70.2
AXR36287.1\|4502103_4502568_-	anaerobic ribonucleoside-triphosphate reductase-activating protein	K4F9T1	Cronobacter_phage	2.7e-51	55.8
AXR36288.1\|4502784_4504923_-	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	6.3e-268	64.9
AXR36289.1\|4505457_4506604_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.3e-146	92.2
AXR36290.1\|4506601_4507549_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	2.4e-22	29.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP023468

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection