CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP031670	Staphylococcus aureus strain 64 chromosome, complete genome	10 crisprs	cas3,DEDDh,DinG,csa3,WYL	5	1	9
CP031672	Staphylococcus aureus strain 64 plasmid pPS00119.1A.2, complete sequence	0 crisprs	NA	0	0	0
CP031671	Staphylococcus aureus strain 64 plasmid pPS00119.1A.1, complete sequence	0 crisprs	csa3	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031670_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031670_1

397379-397479

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031670_1

>merge|CP031670|1|397379-397479|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>CP031670|1|1|397379-397479|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP031670.1\|AXP70249.1\|389985_390372_-\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP70247.1\|388661_388913_+\|Transglycosylase-associated-protein	unknown	unknown	gnl\|CDD\|225170
CP031670.1\|AXP70265.1\|407355_407628_-\|Transposase	unknown	unknown	gnl\|CDD\|225511
CP031670.1\|AXP70263.1\|405323_405860_-\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP70250.1\|390623_391250_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380196
CP031670.1\|AXP70258.1\|399374_399782_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584
CP031670.1\|AXP70256.1\|397495_398452_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235334
CP031670.1\|AXP70261.1\|402178_403645_+\|Inosine-5'-monophosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
CP031670.1\|AXP70252.1\|391694_393218_-\|Alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
CP031670.1\|AXP70251.1\|391322_391580_-\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP70262.1\|403669_405211_+\|GMP-synthase-[glutamine-hydrolyzing]	unknown	unknown	gnl\|CDD\|234614
CP031670.1\|AXP70254.1\|394243_395050_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
CP031670.1\|AXP70260.1\|400872_402141_+\|Uric-acid-permease-PucK	unknown	unknown	gnl\|CDD\|274468
CP031670.1\|AXP70255.1\|395130_396519_-\|L-cystine-uptake-protein-TcyP	unknown	unknown	gnl\|CDD\|224736
CP031670.1\|AXP70253.1\|393233_393803_-\|Alkyl-hydroperoxide-reductase-subunit-C	unknown	unknown	gnl\|CDD\|211789
CP031670.1\|AXP70246.1\|388098_388362_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238045
CP031670.1\|AXP70259.1\|400294_400873_+\|Xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
CP031670.1\|AXP70248.1\|389338_389920_+\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|223483
CP031670.1\|AXP70257.1\|398569_399232_-\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP70264.1\|406252_406957_-\|PemK-like-protein	unknown	unknown	gnl\|CDD\|367091

Protein	Function_ID	Function_description	E-value
CP031670.1\|AXP70247.1\|388661_388913_+\|Transglycosylase-associated-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.58864e-09
CP031670.1\|AXP70265.1\|407355_407628_-\|Transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.23077e-11
CP031670.1\|AXP70250.1\|390623_391250_-\|hypothetical-protein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.67126e-71
CP031670.1\|AXP70258.1\|399374_399782_-\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.0219e-12
CP031670.1\|AXP70256.1\|397495_398452_-\|hypothetical-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0.000748442
CP031670.1\|AXP70261.1\|402178_403645_+\|Inosine-5'-monophosphate-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
CP031670.1\|AXP70252.1\|391694_393218_-\|Alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
CP031670.1\|AXP70262.1\|403669_405211_+\|GMP-synthase-[glutamine-hydrolyzing]	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
CP031670.1\|AXP70254.1\|394243_395050_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	5.24225e-88
CP031670.1\|AXP70260.1\|400872_402141_+\|Uric-acid-permease-PucK	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	2.75897e-170
CP031670.1\|AXP70255.1\|395130_396519_-\|L-cystine-uptake-protein-TcyP	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
CP031670.1\|AXP70253.1\|393233_393803_-\|Alkyl-hydroperoxide-reductase-subunit-C	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124
CP031670.1\|AXP70246.1\|388098_388362_-\|hypothetical-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.0037414
CP031670.1\|AXP70259.1\|400294_400873_+\|Xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	9.01486e-119
CP031670.1\|AXP70248.1\|389338_389920_+\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	2.78414e-49
CP031670.1\|AXP70264.1\|406252_406957_-\|PemK-like-protein	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	9.65175e-08

>CP031670.1|AXP70255.1|395130_396519_-|L-cystine-uptake-protein-TcyP
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLIYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKRAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLIILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFDSNDNAALTSH
>CP031670.1|AXP70254.1|394243_395050_+|NADPH-dependent-oxidoreductase
MQYEDFKLIVKYRGVGNVSEHVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>CP031670.1|AXP70253.1|393233_393803_-|Alkyl-hydroperoxide-reductase-subunit-C
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>CP031670.1|AXP70252.1|391694_393218_-|Alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDDKSKELKDLLTEITDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKKLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMNTGEEHLLNLDGIFVQIGLLPNTSWLNDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>CP031670.1|AXP70251.1|391322_391580_-|hypothetical-protein
MLKVCTSRKQINMKNDIEKEKYVNEIIMLLRTIPTSKLVQPIMQLFIDKAILNNVQNDALLIEKATHARNHLRLWSLQGHRDIPN
>CP031670.1|AXP70250.1|390623_391250_-|hypothetical-protein
MKKRLLLSTFLASTLILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>CP031670.1|AXP70249.1|389985_390372_-|hypothetical-protein
MMKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIIIMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFTSTIITLAIGGKSVEKNDSP
>CP031670.1|AXP70248.1|389338_389920_+|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase
MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLCDYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISANPKYEKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQKDDIVIVAHQVVIRCLMVYFNKVSRAEAVDLKVENCKPYIIE
>CP031670.1|AXP70247.1|388661_388913_+|Transglycosylase-associated-protein
MFGFIGMLIVGGLIGWAAGAIMGKDIPGGILGNIIAGIIGSWVGGKLFGQWGPELGSIYILPALIGSIILIAIVTLILRAMRK
>CP031670.1|AXP70246.1|388098_388362_-|hypothetical-protein
MNMHILYNLRTKHNLEIDELAQQLNEKYGTKYEAHQIWEWENHHHEPKFKDAMHLADFFDAPYEMFLESKVKEYQKHLEEVDIRMDK
>CP031670.1|AXP70256.1|397495_398452_-|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKALAESTNKVEKNAVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQSKNDNAAETSNKEATVDAEAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL
>CP031670.1|AXP70257.1|398569_399232_-|hypothetical-protein
MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEEMDLRKPF
>CP031670.1|AXP70258.1|399374_399782_-|hypothetical-protein
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHQEVHENNSAYEEIDITHFAEASKGPKA
>CP031670.1|AXP70259.1|400294_400873_+|Xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKNKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVGEE
>CP031670.1|AXP70260.1|400872_402141_+|Uric-acid-permease-PucK
MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILLLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVK
>CP031670.1|AXP70261.1|402178_403645_+|Inosine-5'-monophosphate-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>CP031670.1|AXP70262.1|403669_405211_+|GMP-synthase-[glutamine-hydrolyzing]
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCRGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>CP031670.1|AXP70263.1|405323_405860_-|hypothetical-protein
MHNNNEFNKKLKDFIGSDKRMALVKGYVNEYKLTTVLRALNNSDYTKGTIHTRSIGNLKQIVDNRIIPKNITQNTIFKLSNLTLEVNLYERNTIYHGDFAIYYPVESALIIETDTPRLINHINNNPVQKIFIITTNDWSFNTLELEKIVDETIIYDLKQEDPKQYEILYKNKHGKLPY
>CP031670.1|AXP70264.1|406252_406957_-|PemK-like-protein
MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYSIAIHSDVTSNKKRYYKSYSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTIVPLSSKGNKNYLKLNESVLNLTATDLKKQIIDISSKVQALAQKYREIDIKLSTEDKKLLSNLNQKANELYRVIGVYSKHKGKDTYVNISAITTISKRRISKINDSDPTGTIIISEDDMNEIEKQLKIKFFSN
>CP031670.1|AXP70265.1|407355_407628_-|Transposase
MTKERRTFSSEFKLQMVRLYKNGKLKNEIIRKYDLKPSIISNSIKQHQNTGPFNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI

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Crispr_ID: CP031670_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031670_2

637624-637716

Orphan

Consensus_repeat	Method
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031670_2

>merge|CP031670|2|637624-637716|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTA

>CP031670|2|2|637624-637716|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	AGGCACAACTGCATAAAAGCCTCTAATCG
CTAAAGATGAAGAGGAACGCAGTTGGATGCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP031670.1\|AXP70451.1\|628309_629248_+\|General-stress-protein-69	unknown	unknown	gnl\|CDD\|381309
CP031670.1\|AXP70453.1\|630163_630640_+\|putative-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP031670.1\|AXP70452.1\|629458_629995_+\|Putative-NAD(P)H-dependent-FMN-containing-oxidoreductase-YwqN	unknown	unknown	gnl\|CDD\|223728
CP031670.1\|AXP70457.1\|634107_634215_+\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP70468.1\|644055_644430_-\|Transcriptional-regulator-SarA	unknown	unknown	gnl\|CDD\|130944
CP031670.1\|AXP70463.1\|639824_640544_+\|(S)-2-haloacid-dehalogenase-4A	unknown	unknown	gnl\|CDD\|223943
CP031670.1\|AXP70467.1\|643016_643805_+\|Proline-iminopeptidase	unknown	unknown	gnl\|CDD\|223669
CP031670.1\|AXP70469.1\|645377_646307_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225778
CP031670.1\|AXP70460.1\|636770_637406_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|225140
CP031670.1\|AXP70461.1\|637784_638672_+\|Vitamin-B12-binding-protein-precursor	unknown	unknown	gnl\|CDD\|238563
CP031670.1\|AXP70464.1\|640527_641328_+\|Haloacetate-dehalogenase-H-1	unknown	unknown	gnl\|CDD\|223669
CP031670.1\|AXP70455.1\|632017_632524_+\|YwhD-family-protein	unknown	unknown	gnl\|CDD\|378039
CP031670.1\|AXP70462.1\|638783_639770_+\|putative-ABC-transporter-permease-protein	unknown	unknown	gnl\|CDD\|376439
CP031670.1\|AXP70465.1\|641463_641970_+\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP70459.1\|634720_636382_+\|Arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
CP031670.1\|AXP70454.1\|630679_631975_+\|HD-domain-protein	unknown	unknown	gnl\|CDD\|224004
CP031670.1\|AXP70456.1\|633022_634033_+\|Alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|181842
CP031670.1\|AXP70470.1\|646501_646726_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378571
CP031670.1\|AXP70466.1\|642131_642848_+\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP70458.1\|634307_634724_+\|putative-beta-barrel-protein-YwiB	unknown	unknown	gnl\|CDD\|226896

Protein	Function_ID	Function_description	E-value
CP031670.1\|AXP70451.1\|628309_629248_+\|General-stress-protein-69	gnl\|CDD\|381309	cd19083, AKR_AKR11A1_11D1, AKR11A and AKR11D families of aldo-keto reductase (AKR). Bacillus subtilis aldo-keto reductase IolS, also called vegetative protein 147 (VEG147), is a founding member of aldo-keto reductase family 11 member A1 (AKR11A1). It is able to reduce the standard aldo-keto reductase (AKR) substrates DL-glyceraldehyde, D-erythrose, and methylglyoxal in the presence of NADPH, albeit with poor efficiency in vitro. Bacillus aryabhattai aldo keto reductase is a founding member of aldo-keto reductase family 11 member D1 (AKR11D1).	7.3194e-168
CP031670.1\|AXP70453.1\|630163_630640_+\|putative-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.13315e-11
CP031670.1\|AXP70452.1\|629458_629995_+\|Putative-NAD(P)H-dependent-FMN-containing-oxidoreductase-YwqN	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	3.16348e-26
CP031670.1\|AXP70469.1\|645377_646307_-\|hypothetical-protein	gnl\|CDD\|225778	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown].	7.93315e-37
CP031670.1\|AXP70468.1\|644055_644430_-\|Transcriptional-regulator-SarA	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.77309e-26
CP031670.1\|AXP70463.1\|639824_640544_+\|(S)-2-haloacid-dehalogenase-4A	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	3.6864e-38
CP031670.1\|AXP70467.1\|643016_643805_+\|Proline-iminopeptidase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.55978e-34
CP031670.1\|AXP70460.1\|636770_637406_+\|endonuclease-III	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	3.98158e-90
CP031670.1\|AXP70461.1\|637784_638672_+\|Vitamin-B12-binding-protein-precursor	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	8.54601e-73
CP031670.1\|AXP70464.1\|640527_641328_+\|Haloacetate-dehalogenase-H-1	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	7.17592e-26
CP031670.1\|AXP70455.1\|632017_632524_+\|YwhD-family-protein	gnl\|CDD\|378039	pfam08741, YwhD, YwhD family. This family of proteins are currently uncharacterized. They are around 170 amino acids in length.	1.08203e-97
CP031670.1\|AXP70462.1\|638783_639770_+\|putative-ABC-transporter-permease-protein	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.17074e-49
CP031670.1\|AXP70459.1\|634720_636382_+\|Arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
CP031670.1\|AXP70454.1\|630679_631975_+\|HD-domain-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	1.70707e-150
CP031670.1\|AXP70456.1\|633022_634033_+\|Alcohol-dehydrogenase	gnl\|CDD\|181842	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional.	0
CP031670.1\|AXP70470.1\|646501_646726_-\|hypothetical-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	1.74707e-13
CP031670.1\|AXP70458.1\|634307_634724_+\|putative-beta-barrel-protein-YwiB	gnl\|CDD\|226896	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown].	2.62525e-58

>CP031670.1|AXP70460.1|636770_637406_+|endonuclease-III
MLGTDELYKVLYEHLGPQFWWPADNDIEMMLGAILVQNTRWRNAEIALNQIKEHTHFNPNHILELPIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLKGIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKNYDQLKKVVTLPNHFTNQDANEFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
>CP031670.1|AXP70459.1|634720_636382_+|Arginine--tRNA-ligase
MNIIDQVKQTLVEEIAASINKAGLADEIPDIKIEVPKDTKNGDYATNIAMVLTKIAKRNPREIAQAIVDNLDTEKAHVKQIDIAGPGFINFYLDNQYLTAIIPEAIEKGDQFGHVNESKGQNVLLEYVSANPTGDLHIGHARNAAVGDALANILTAAGYNVTREYYINDAGNQITNLARSIETRFFEALGDNSYSMPEDGYNGKDIIEIGKDLAEKHPEIKDYSEEARLKEFRKLGVEYEMAKLKNDLAEFNTHFDNWFSETSLYEKGEILEVLAKMKELGYTYEADGATWLRTTDFKDDKDRVLIKNDGTYTYFLPDIAYHFDKVKRGNDILIDLFGADHHGYINRLKASLETFGVDSNRLEIQIMQMVRLMENGKEVKMSKRTGNAITLREIMDEVGVDAARYFLTMRSPDSHFDFDMELAKEQSQDNPVYYAQYAHARICSILKQAKEQGIEVTAANDFTTITNEKAIELLKKVADFEPTIESAAEHRSAHRITNYIQDLASHFHKFYNAEKVLTDDIEKTKAHVAMIEAVRITLKNALAMVGVSAPESM
>CP031670.1|AXP70458.1|634307_634724_+|putative-beta-barrel-protein-YwiB
MDKKVSIQTKQVLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQIEDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLEVKTLRILHFVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE
>CP031670.1|AXP70457.1|634107_634215_+|hypothetical-protein
MKDSENLVFFGFEVLFVFYKMAYIYEALIKYGIVN
>CP031670.1|AXP70456.1|633022_634033_+|Alcohol-dehydrogenase
MRAAVVTKDHKVSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEMENGTITGRMVIKF
>CP031670.1|AXP70455.1|632017_632524_+|YwhD-family-protein
MSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKHSSDALHQAFN
>CP031670.1|AXP70454.1|630679_631975_+|HD-domain-protein
MTNAYVDLKLVEEKVFKDPIHRYIHVEDQLIWDLIKTKEFQRLRRIRQLGTLYLSFHTAEHSRFGHSLGVYEIVRRLIDESFIGHDAWDNKDRPLALCAALLHDLGHGPFSHSFEKIFNTDHEAYTQAIITGDTEVNAVLRKVAPEFPREVAEVINKTHHNKLVISMISSQIDADRMDYLQRDAYFTGVSYGAFDMERILRLMRPSKDEVLIKESGMHAVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKLHPHDFIPFFEETVTIEQYVELDEAVVTYYLEKWTKEDDAILSDLASRFINRDLFKYIPFDGSIITISELQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLRQDGTIREISNQSLVIHSITGINRQDYKLYYPREMVAKIKDKTIREAIENLINELN
>CP031670.1|AXP70453.1|630163_630640_+|putative-acetyltransferase
MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASYNEHHLKKRLQEQLFLVVEEGNDIVGFANFIYGEELYLSAHYVKPESQHTGYGTALLNEGLSRFEDKFEGVYLEVDNKNEEAVAYYKEQGFTILRSYEPEMYGEKLDLALMYKAF
>CP031670.1|AXP70452.1|629458_629995_+|Putative-NAD(P)H-dependent-FMN-containing-oxidoreductase-YwqN
MITVLFGGSRPNGNTAQLTKFALQDLEYQWIDVTQHQFKPIRDVRHTAETITSYDDDYLPILDKILASDTIIFASPVYWYSISAPLKAFIEHWSETLQDKRYPNFKAQMAEKDFRVILVGGDCPKIKAKPAITQMKYSLDFLGATLNGYIIGTAEKPGDIMKDNYALARATEWNSILQ
>CP031670.1|AXP70451.1|628309_629248_+|General-stress-protein-69
MKQFVNLGKSDVEVFPIALGTNAVGGHNLYPNLDEEQGKDVVRQAINHGINLLDTAYIYGPERSEELVGEVVKEYPREQIKIATKGSHEFDENQEVHQNNQPEYLKQQVENSLKRLQTDYIDLYYIHFPDNNTPKDQAVAALQELKEQGKIKAIGVSNFTLDQLKEANKDGYVDVVQLEYNLLHRENEAVLQYCVDHQITFIPYFPLASGILAGKYDENTKFSDHRTTRRDFKPGVFEENVRRVKALESIAAAHQTSIANIVLAFYLTRPAIDVIIPGAKRAEQVVENIKAADIVLSDDEIQYIDELFPIED
>CP031670.1|AXP70461.1|637784_638672_+|Vitamin-B12-binding-protein-precursor
MKKSLIAFILIFMLVLSGCGMKDNDKQGSNDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAKTRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
>CP031670.1|AXP70462.1|638783_639770_+|putative-ABC-transporter-permease-protein
MNVIIDERKENAMTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPVFSITFSLITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLITYIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVTGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH
>CP031670.1|AXP70463.1|639824_640544_+|(S)-2-haloacid-dehalogenase-4A
MDLNQIKAVVFDLEGTLLDRVKSREKFIEEQYERFHDYLIHVQLADFKKAFIELDDDEDNDKPDLYKEIIKRFHVDRLTWKDLFNDFEMHFYRYVFPYYDTLYTLEKLSQKGFQIGVIANGKSKIKQFRLHSLGLMHVINYLSTSETVGFRKPHPKIFEDMIDQLGVLPEQIMYVGDDALNDVAPARAMGMVSVWYKQEDAEIEPLEEEVDFTITTVEELLTILPIKNDNKGENYGSIY
>CP031670.1|AXP70464.1|640527_641328_+|Haloacetate-dehalogenase-H-1
MDLFTRKDGTSIHYSTLGEGYPIVLIHTVLDNYSVFNKLAAELAKSFQVVLIDLRGHGYSDKPRHIEIKDFSDDIVELLKYLYIEEVAFVCHEMGGIIGADISVRYPEFTSSLTLVNPTSIEGELPEERLFRKYAHIIRNWDPEKQDKFLNKRKYYRPRKMNRFLKHVVDTNEISTKEEIQAVKEVFKNADISQTYRNVVVPTKIIAGEFGERTTRLEAKEVADLIQNADFEVYQESSAFPFVEEQERFVEDTAAFINKHHDEKHV
>CP031670.1|AXP70465.1|641463_641970_+|hypothetical-protein
MKKLLTASIIACSVVMGVGLVNTSAEAASGNSIDTVKQLIKGDQSLENVKIGESIKDVLTKYKNPMYSYNEDGTEHYYEFHTKKGMLLVTTDGKKNNGKVTHISMMYNDANGPTYQAVKNYVGKAVTHTEYSKVAGNFGYIEKGKTTYQFASAPKDKNIKLYRIDLEK
>CP031670.1|AXP70466.1|642131_642848_+|hypothetical-protein
MRINDKILLENIEDYFNHKGLSPHLIDDIKEKVITDIKNSEKKDQDYIEYKRKSPAQIILMIQRNLFALQMNPVIFFIINFILISYLYDKQYVQFQAITGMSLFYCLVIFPMTIVVYLRVSQKNYLRSNKIEMIMGTIIAIISLLLIILQAFNITWGVIPITNFGHQFFFFIGIILVIAGIFYKRLEFSGIGLLFCQKTVDAMIHNPQSAQIFSLIIWILLVVLVIYFTIRLSSRTRL
>CP031670.1|AXP70467.1|643016_643805_+|Proline-iminopeptidase
MNKVTINPQIQLTYQIEGKGDPIILLHGLDGNLAGFEDLQHQLASSYKVLTYDLRGHGKSSKSESYDLNDHVEDLKILMEKLNIHEAHILGHDLGGVVAKLFTDKYAYRVKSLTTIASKKDDLIHSFTQLLIQYQDDIAGFNKSEAYILLFSKLFRNQEKTMKWYQKQRIYSIKSEDDSAVAIRSLILHKDEPMYLKKRTCVPTLLINGEHDPLIKDKNHFKLEAHFLNVTKKIFEHSGHAPHIEEPEAFMNYYLKFLKSVS
>CP031670.1|AXP70468.1|644055_644430_-|Transcriptional-regulator-SarA
MAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIEL
>CP031670.1|AXP70469.1|645377_646307_-|hypothetical-protein
MLLFYIIGVLVGMLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPEVFTIHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLFGATIHDFNLIKAIGVLLLIVGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTTINSALASHTHSPAFASLVSFTIGSIALLILTAIFNRSLKLKTSHLKFGKLKPIYFTGGILGMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFGSPKIAMTSRKTIGLLCILTGIILLRLF
>CP031670.1|AXP70470.1|646501_646726_-|hypothetical-protein
MTKTLELSFKSSLDKPVKLQLPQLNNVVTEQVARDSMNALVDLNIIKSNSGTITKVHSAQIIDKTTTVLFEDKK

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Crispr_ID: CP031670_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031670_3

700542-700640

Orphan

Consensus_repeat	Method
AAGAGCCCCTAATTAATAAATTAAAAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031670_3

>merge|CP031670|3|700542-700640|CRISPRCasFinder
AAGAGCCCCTAATTAATAAATTAAAAGGGGACAAAGGAATACAGTTGGTTGCTAATGCACCAACTGCATAAGAGCCCCTAATTAATAAATTAAAAGGGG

>CP031670|3|3|700542-700640|CRISPRCasFinder
AAGAGCCCCTAATTAATAAATTAAAAGGGG	ACAAAGGAATACAGTTGGTTGCTAATGCACCAACTGCAT
AAGAGCCCCTAATTAATAAATTAAAAGGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP031670.1\|AXP70525.1\|703277_703721_+\|putative-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP031670.1\|AXP70514.1\|691944_692742_-\|N-acetylmuramoyl-L-alanine-amidase-sle1-precursor	unknown	unknown	gnl\|CDD\|226451
CP031670.1\|AXP70524.1\|702461_703151_-\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP70523.1\|701874_702363_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225395
CP031670.1\|AXP70515.1\|693102_693747_+\|Inhibitor-of-apoptosis-promoting-Bax1	unknown	unknown	gnl\|CDD\|223742
CP031670.1\|AXP70531.1\|706366_707050_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234750
CP031670.1\|AXP70528.1\|704699_705242_+\|Acetyltransferase-(GNAT)-family-protein	unknown	unknown	gnl\|CDD\|379112
CP031670.1\|AXP70530.1\|705905_706364_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|178882
CP031670.1\|AXP70516.1\|694443_696594_+\|Melibiose-operon-regulatory-protein	unknown	unknown	gnl\|CDD\|197666
CP031670.1\|AXP70526.1\|703787_704183_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240271
CP031670.1\|AXP70521.1\|699590_700457_+\|Hydrogen-peroxide-inducible-genes-activator	unknown	unknown	gnl\|CDD\|223656
CP031670.1\|AXP70529.1\|705337_705904_-\|LOG-family-protein-YvdD	unknown	unknown	gnl\|CDD\|224527
CP031670.1\|AXP70518.1\|697288_698005_+\|putative-transcriptional-regulatory-protein	unknown	unknown	gnl\|CDD\|237084
CP031670.1\|AXP70517.1\|696673_697099_+\|HTH-type-transcriptional-regulator-SarX	unknown	unknown	gnl\|CDD\|130944
CP031670.1\|AXP70519.1\|698004_698478_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226072
CP031670.1\|AXP70527.1\|704320_704620_+\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP70522.1\|700657_701878_+\|Sugar-efflux-transporter-C	unknown	unknown	gnl\|CDD\|341024
CP031670.1\|AXP70512.1\|689716_690334_+\|Putative-pit-accessory-protein	unknown	unknown	gnl\|CDD\|224310
CP031670.1\|AXP70513.1\|690349_691357_+\|Low-affinity-inorganic-phosphate-transporter-1	unknown	unknown	gnl\|CDD\|376541
CP031670.1\|AXP70520.1\|698830_699475_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225188

Protein	Function_ID	Function_description	E-value
CP031670.1\|AXP70525.1\|703277_703721_+\|putative-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.56694e-12
CP031670.1\|AXP70514.1\|691944_692742_-\|N-acetylmuramoyl-L-alanine-amidase-sle1-precursor	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.27934e-40
CP031670.1\|AXP70523.1\|701874_702363_+\|hypothetical-protein	gnl\|CDD\|225395	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown].	4.76789e-44
CP031670.1\|AXP70515.1\|693102_693747_+\|Inhibitor-of-apoptosis-promoting-Bax1	gnl\|CDD\|223742	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only].	1.16188e-32
CP031670.1\|AXP70531.1\|706366_707050_-\|hypothetical-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.000491798
CP031670.1\|AXP70528.1\|704699_705242_+\|Acetyltransferase-(GNAT)-family-protein	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.77698e-28
CP031670.1\|AXP70530.1\|705905_706364_-\|hypothetical-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	1.18273e-77
CP031670.1\|AXP70516.1\|694443_696594_+\|Melibiose-operon-regulatory-protein	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	2.1005e-20
CP031670.1\|AXP70526.1\|703787_704183_+\|hypothetical-protein	gnl\|CDD\|240271	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.	0.00179936
CP031670.1\|AXP70521.1\|699590_700457_+\|Hydrogen-peroxide-inducible-genes-activator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.51151e-39
CP031670.1\|AXP70529.1\|705337_705904_-\|LOG-family-protein-YvdD	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	1.24037e-61
CP031670.1\|AXP70518.1\|697288_698005_+\|putative-transcriptional-regulatory-protein	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	8.8628e-136
CP031670.1\|AXP70517.1\|696673_697099_+\|HTH-type-transcriptional-regulator-SarX	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.37359e-23
CP031670.1\|AXP70519.1\|698004_698478_+\|hypothetical-protein	gnl\|CDD\|226072	COG3542, COG3542, Uncharacterized conserved protein [Function unknown].	1.99109e-74
CP031670.1\|AXP70522.1\|700657_701878_+\|Sugar-efflux-transporter-C	gnl\|CDD\|341024	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters. This family is composed of sugar transporters such as Escherichia coli Sugar efflux transporter SetA, SetB, SetC and other sugar transporters. SetA, SetB, and SetC are involved in the efflux of sugars such as lactose, glucose, IPTG, and substituted glucosides or galactosides. They may be involved in the detoxification of non-metabolizable sugar analogs. The Set family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.37741e-101
CP031670.1\|AXP70512.1\|689716_690334_+\|Putative-pit-accessory-protein	gnl\|CDD\|224310	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism].	3.27806e-54
CP031670.1\|AXP70513.1\|690349_691357_+\|Low-affinity-inorganic-phosphate-transporter-1	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	5.23541e-104
CP031670.1\|AXP70520.1\|698830_699475_+\|hypothetical-protein	gnl\|CDD\|225188	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only].	1.46792e-91

>CP031670.1|AXP70521.1|699590_700457_+|Hydrogen-peroxide-inducible-genes-activator
MKIEDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIENAFGVDIFIRTKKQLITTTEGTMIIEHARDMLKRERLFFDKMQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNAQFPNVEIQVQVGSTEQIKANHRDYHVMITRGNKVMNLANTHLFNDDHYFIFPKNRRDDVTKLPFIEFQADPIYINQIKEWYNDNLEQDYHATITVDQVATCKEMLISGVGVTILPEIMMKNISKEQFEFEKVEIDNEPLIRSTFMSYDPSMLQLPQVDSFVNLMASFVEQPKA
>CP031670.1|AXP70520.1|698830_699475_+|hypothetical-protein
MKVKYIDKRHWRRLIDREYTEVKVNNNRFKGIIGLVTMKKVRDPLEVTVVGQNIIVADDNYKWLQILPEKKRYSITVMFDNKGNPLEYYFDINIKNITQKGNARTVDLCLDVLALPSGEYELVDEDDLMFALESEQITKKQFHEAYMIAHQIMAELENDFKGFQKKIMYCFNKINAKAQKNHQKPQNKTNIEKSKQIKPKQYNQTKNHQQQKKN
>CP031670.1|AXP70519.1|698004_698478_+|hypothetical-protein
MKSAEQWIDELQLESHPEGGFYRETIREVLKDGRRAPFSSIYFLLTDDNISHFHRIDADEVWYYHAGDSLTIHMINPDGEYTTATLGTDIQNGDVLQYVVPKGTIFASSIEISNTFSLVGCMCQPAFEFKQFELFKQSELITQYPHLKSVIEKYALK
>CP031670.1|AXP70518.1|697288_698005_+|putative-transcriptional-regulatory-protein
MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPNPESNQALRLVLERAKTYSVPNHIIEKAIDKAKGAGDENFDHLRYEGFGPSGSMLIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDHVATFGIEGKSVDEILETLMEQDVDVNDVIDDNGLTIVYAEPDQFAVVQDALRAAGVEEFKVAEFEMLPQTDIELSEADQVTFEKLIDALEDLEDVQNVFHNVDLK
>CP031670.1|AXP70517.1|696673_697099_+|HTH-type-transcriptional-regulator-SarX
MAEKFKIIMTEALSLYIWGCNILNTEKLETLLGFYKQYKALSEYIDKKYKLSLNDLAVLDLTMKHCNDEKVLMQSFLKTAMDELDLSRTKLLVSIRRLIEKERLSKVRSSKDERKIYIYLNNDDISKFNALFEDVEQFLNI
>CP031670.1|AXP70516.1|694443_696594_+|Melibiose-operon-regulatory-protein
MAKSCLHILTNNEYATTRCQDGIVLFWPIDGEIELQKFRKSKIIEDDIYIINHLDVFSIKNNKKTIMLYLSSDWFAELGFTFFNYHYTAKLIKSSYNLKCLLLKLTYRYLDNQPLNDADIRKLQDIIKIIAKEASMDKKIVQNQYRYAYYGDLRDELEYIYQNVNQRLTLKSVADKLFVSKSNLSSQFHLLMGMGFKKYIDTLKIGKSIEILLTTDSTISNISEHLGFSSSSTYSKMFKSYMDITPNEYRNLSKYNKCLMLKPEPLVGKMVQEVKEIILNYIEHYKNHLTDVIHIDEDKFETPKLFQTVIQINTYTEMKLVFLEGIFKTLLNKNSQVVFFIMPSILKSKNTMSEEEKFTIIKTIIESDLKIAFNINNIETTYFVEEAFMSVFRQISPNELSNHNNYEVHFVFDLSLMEIRTIYRMILKLHNIMLNVKLGLNITCLFEKPSVFKSLVSQIKRLKFDSLIIDNANLSSPYLMGESDELLLKNILHFKNLKQVINELDIEQEKLIFLNVENHKLLNNKERDLSNSAPLIYKTLSALYHNFDGFGLNIFDNHQAFNAMHLYDKNGFKTTLGLILEKFIEYVSKPKYENSYYSIFDIENYYCLVIYDWRVIESETIMSNFEDSQVYINFKNNVLNDKYLIVIETLDENSGNINHLISKELRDKYEWNPSLLSKIDNYLKPAIEIKEHNFSDNSLNINVTFNALYIIKIGKK
>CP031670.1|AXP70515.1|693102_693747_+|Inhibitor-of-apoptosis-promoting-Bax1
MSQNTNHSYYHQNQHAQSISKVWLYFMYYWIIFGIGCYLGQFLPLSWRQPLSFGLLIIILATLVFERARRFGLIISHIYAVVIGLLSYATFTTYLQNLGPDIFYKNIALAIFAFIAFGIIGYFFVGDASSIGKYLFVTLITLIIASLIGIFLQNPIFYTIITVVSLLLFLLYTLYDFNRLKRGDYSPREMGFNLFINLLNIIKDILYLANMFRR
>CP031670.1|AXP70514.1|691944_692742_-|N-acetylmuramoyl-L-alanine-amidase-sle1-precursor
MKKLAFAITATSGAAAFLTHHDAQASTQHTVQSGESLWSIAQKYNTSVESIKQNNQLDNNLVFPGQVISVGGSDAQNTSNTSPQAGSASSHTVQAGESLNIIASRYGVSVDQLMAANNLRGYLIMPNQTLQIPNGGSGGTTPTATTGSNGNASSFNHQNLYTAGQCTWYVFDRRAQAGSPISTYWSDAKYWAGNAANDGYQVNNTPSVGSIMQSTPGPYGHVAYVERVNGDGSILISEMNYTYGPYNMNYRTIPASEVSSYAFIH
>CP031670.1|AXP70513.1|690349_691357_+|Low-affinity-inorganic-phosphate-transporter-1
MSYIIIVTIAVVIFSLIFDFINGFHDTANAVATAVSTRALTPKTAILMAAVMNFIGALTFTGVAGTITKDIVDPFKLENGLVVVLAAILAAIIWNLATWFYGIPSSSSHALIGSIAGAAIASEGSFGVLHYQGFTKIIIVLIVSPIIAFCVGFLMYSIFKVIFKNANLTRANRNFRFFQIFTAALQSFSHGTNDAQKSMGIITLALIVANVQNDGSVEPQLWVKFACATAMGLGTAIGGWKIIKTVGGNIMKIRPANGAAADLSSALTIFVASSLHFPLSTTHVVSSSILGVGASNRAKGVKWSTAQRMIITWVITLPISALLAGLLFYILNLFF
>CP031670.1|AXP70512.1|689716_690334_+|Putative-pit-accessory-protein
MFSKKKDKFMVQLEEMVFNLDRAAIEFGKMDFNTHLDLKAYSDNIKTYESHGDELVHQVITDLNQTFITPIEREDILSLCDAIDDVLDAIEETAAMFEMYSIEYTDEYMAEFVDNIQKAVAEMKLAVGLLVDKKLSHMRIHSINIKEFETNCDGILRQSIKHIFNSETDPITLIKIKDIYESMEEIADKCQIVANNFETIIMKNS
>CP031670.1|AXP70522.1|700657_701878_+|Sugar-efflux-transporter-C
MDMFAALLQIKNYKLFVANMFLLGMGIAVTVPYLVLFATKDLGMTTNQYGLLLASAAISQFTVNSIIARFSDTHHFNRKIIIILALLMGALGFSIYFFVDTIWLFILLYAIFQGLFAPAMPQLYASARESINVSSSKDRAQFANTVLRSMFSLGFLFGPFIGAQLIGLKGYAGLFGGTISIILFTLVLQVFFYKDLNIKHPISTQQHVEKIAPNMFKDKTLLLPFIAFILLHIGQWMYTMNMPLFVTDYLKENEQHVGYLASLCAGLEVPFMIILGVLSSRLQTRTLLIYGAIFGGLFYFSIGVFKNFYMMLAGQVFLAIFLAVLLGIGISYFQDILPDFPGYASTLFSNAMVIGQLGGNLLGGAMSHWVGLENVFFVSAASIMLGMILIFFTKNQKITKEDVIST
>CP031670.1|AXP70523.1|701874_702363_+|hypothetical-protein
MTIILWLLIIAAFMLAFVGLIKPIIPSVLVLWVGFLIYQFGFHNQHLSWVFYVSMALLTILILCADFLANKYFVNRFGGSKFGEYAALIGVVIGCFVLPPFGIIIIPFILVFIVELIQGYSFERAVKVSIGSIVAFLTSSIAQAIIMFIMIVWFFIDALLIN
>CP031670.1|AXP70524.1|702461_703151_-|hypothetical-protein
MKSTAQLTKENNVKSLRLSNTDREIFENYMTYMRSDFRVNPHDTELIINRILKQLLSAEQHGLLALDFFNHDPKAHAIKELKAMPNETFKNIFKYIYQHIVLLIGIVSFLKGFLGFFMEKNGSNLYFVSFPFSVVVGFFIVFLFIWFSFKTIQLQCFNNSNWIWIFTYLAIILLIVGFFYVFFIPQSLLAFGPYIQVSNWVFIIFSFIVMPIGLRIERNISKKHSHTFL
>CP031670.1|AXP70525.1|703277_703721_+|putative-acetyltransferase
MRTLNKDEHNYIKQIANIHETLLSQVESNYKCTKLSIALRYEMICSRLEHTNDKIYIYENEGQLIAFIWGHFSNEKSMVNIELLYVEPQFRKLGIATQLKIALEKWAKTMNAKRISNTIHKNNLPMISLNKDLGYQVSHVKMYKDID
>CP031670.1|AXP70526.1|703787_704183_+|hypothetical-protein
MKKLIISIMAVMLFLTGCGKSQEKATLEKDIDNLQKENKELKDKKEKLQQEKEKLADKQKDLEKEVKDLKPSKEDNKDDKKDEDKNKDKDKDKEASQDKQSKDQTKSSDKDNHKKPTSADKDQKANDKHQS
>CP031670.1|AXP70527.1|704320_704620_+|hypothetical-protein
MHEQDFRILEGQDITLPELGRELENITGHTIADSTGEIKRVIAHLPNFESDTDTFVATYRLNHQQDFIDATFTALKSDRARLKEVPVHVELISYISKSK
>CP031670.1|AXP70528.1|704699_705242_+|Acetyltransferase-(GNAT)-family-protein
MIYCETERLILRDWHEDDLLPFQKMNANYDVRKYFPSLLSYRRSELDMRTMDAVIKDYGIGLFAVEDKESHQWIGFIGLNYIPETSDYPFKELPLYEIGWRLLPEFWGKGLATEGAKATLKLAEEHQIYDVYSFTAEANKASQRVMEKIGMTVYDHFELPNLSKYHLLKRQVRYYINLRK
>CP031670.1|AXP70529.1|705337_705904_-|LOG-family-protein-YvdD
MKRIAVYCGASKGHDPSYVQKAYDLGKYFAEQGYELVFGAGSIGIMGAIQDGVLDHGGKAIGVMPKMLDEHEITSQRLTELILVDSMHERKNKMAELADAFVMAPGGAGSLEEFFEMYSWAQIGIHEKPIAIYNINGFFNPLQTMIDHMIEEGFIDPKYRALAPLCDTKESLIESILNFKPLGTRSYD
>CP031670.1|AXP70530.1|705905_706364_-|hypothetical-protein
MTHIIIDGDACPVVDSIIDLTTETGIFVTIIRSFSHFSNQLYPPHVSTLYVDDGPDAVDYKIVQLSTKDDIVVTQDYGLASLLVDKVLIVMHHNGKIYNSKNIQQLLDKRYMNAQIRKQGGRHKGPPPFTKQDQKVFEQSLLKVIHRIKELD
>CP031670.1|AXP70531.1|706366_707050_-|hypothetical-protein
MDKKKVIKFMINVLPIVLVPLIVERKRIKQHPDVQKVTDATSKVASKTSAAISNTASDVKEYVGDKKQDFENKRELKKFAREHDPAYIEKKGEKLAKQNRKDADKMNKILQKNIEKRHKEEQKAREKNEIQRIKDMKKSQKYEEKAGLTPNKLDEKTEKKGDKLAEKNRKEIAKMNKKLQKNIEKRHKEEQKRQQEADKARIKSFKKYKDYVAKSASQQNKENNTEA

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Crispr_ID: CP031670_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031670_4

753499-753581

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031670_4

>merge|CP031670|4|753499-753581|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>CP031670|4|4|753499-753581|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP031670.1\|AXP70578.1\|759249_759648_+\|ribonucleotide-reductase-stimulatory-protein	unknown	unknown	gnl\|CDD\|224694
CP031670.1\|AXP70566.1\|741087_742092_+\|KipI-antagonist	unknown	unknown	gnl\|CDD\|224895
CP031670.1\|AXP70581.1\|763470_764484_+\|Fe(3+)-dicitrate-transport-system-permease-protein-FecD	unknown	unknown	gnl\|CDD\|226965
CP031670.1\|AXP70580.1\|761833_762805_+\|Ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
CP031670.1\|AXP70576.1\|757062_757563_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase	unknown	unknown	gnl\|CDD\|223851
CP031670.1\|AXP70574.1\|754029_754947_-\|Putative-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
CP031670.1\|AXP70567.1\|742565_744506_+\|Lipoteichoic-acid-synthase	unknown	unknown	gnl\|CDD\|224287
CP031670.1\|AXP70582.1\|764470_765427_+\|Iron-uptake-system-permease-protein-FeuC	unknown	unknown	gnl\|CDD\|226964
CP031670.1\|AXP70565.1\|740393_741104_+\|Kinase-A-inhibitor	unknown	unknown	gnl\|CDD\|224960
CP031670.1\|AXP70583.1\|765423_766185_+\|putative-siderophore-transport-system-ATP-binding-protein-YusV	unknown	unknown	gnl\|CDD\|226963
CP031670.1\|AXP70579.1\|759610_761716_+\|Ribonucleoside-diphosphate-reductase-subunit-alpha-2	unknown	unknown	gnl\|CDD\|236069
CP031670.1\|AXP70571.1\|749644_751159_+\|Choline-transport-system-permease-protein-OpuBB	unknown	unknown	gnl\|CDD\|270328
CP031670.1\|AXP70569.1\|746671_748453_+\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
CP031670.1\|AXP70573.1\|752807_753350_+\|Putative-5'(3')-deoxyribonucleotidase	unknown	unknown	gnl\|CDD\|226895
CP031670.1\|AXP70572.1\|751398_752457_+\|Histidinol-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|235106
CP031670.1\|AXP70577.1\|757582_758449_-\|EamA-like-transporter-family-protein	unknown	unknown	gnl\|CDD\|223769
CP031670.1\|AXP70570.1\|748674_749652_+\|Choline-transport-ATP-binding-protein-OpuBA	unknown	unknown	gnl\|CDD\|224050
CP031670.1\|AXP70564.1\|739425_740034_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376449
CP031670.1\|AXP70575.1\|755216_756722_-\|Di-/tripeptide-transporter	unknown	unknown	gnl\|CDD\|225646
CP031670.1\|AXP70568.1\|744782_746660_+\|putative-ABC-transporter-ATP-binding-protein-YjjK	unknown	unknown	gnl\|CDD\|223562

Protein	Function_ID	Function_description	E-value
CP031670.1\|AXP70578.1\|759249_759648_+\|ribonucleotide-reductase-stimulatory-protein	gnl\|CDD\|224694	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism].	5.52807e-56
CP031670.1\|AXP70566.1\|741087_742092_+\|KipI-antagonist	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	1.25641e-144
CP031670.1\|AXP70581.1\|763470_764484_+\|Fe(3+)-dicitrate-transport-system-permease-protein-FecD	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.27667e-149
CP031670.1\|AXP70580.1\|761833_762805_+\|Ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.30551e-164
CP031670.1\|AXP70576.1\|757062_757563_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase	gnl\|CDD\|223851	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only].	1.8816e-78
CP031670.1\|AXP70574.1\|754029_754947_-\|Putative-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	3.10512e-78
CP031670.1\|AXP70567.1\|742565_744506_+\|Lipoteichoic-acid-synthase	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0
CP031670.1\|AXP70582.1\|764470_765427_+\|Iron-uptake-system-permease-protein-FeuC	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.95637e-121
CP031670.1\|AXP70565.1\|740393_741104_+\|Kinase-A-inhibitor	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	1.29969e-94
CP031670.1\|AXP70583.1\|765423_766185_+\|putative-siderophore-transport-system-ATP-binding-protein-YusV	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	3.31412e-150
CP031670.1\|AXP70579.1\|759610_761716_+\|Ribonucleoside-diphosphate-reductase-subunit-alpha-2	gnl\|CDD\|236069	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
CP031670.1\|AXP70571.1\|749644_751159_+\|Choline-transport-system-permease-protein-OpuBB	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.03165e-152
CP031670.1\|AXP70569.1\|746671_748453_+\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
CP031670.1\|AXP70573.1\|752807_753350_+\|Putative-5'(3')-deoxyribonucleotidase	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	1.15481e-107
CP031670.1\|AXP70572.1\|751398_752457_+\|Histidinol-phosphate-aminotransferase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
CP031670.1\|AXP70577.1\|757582_758449_-\|EamA-like-transporter-family-protein	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.8323e-10
CP031670.1\|AXP70570.1\|748674_749652_+\|Choline-transport-ATP-binding-protein-OpuBA	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	4.80291e-155
CP031670.1\|AXP70564.1\|739425_740034_+\|hypothetical-protein	gnl\|CDD\|376449	pfam01063, Aminotran_4, Amino-transferase class IV. The D-amino acid transferases (D-AAT) are required by bacteria to catalyze the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity.	5.60043e-39
CP031670.1\|AXP70575.1\|755216_756722_-\|Di-/tripeptide-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.22605e-172
CP031670.1\|AXP70568.1\|744782_746660_+\|putative-ABC-transporter-ATP-binding-protein-YjjK	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0

>CP031670.1|AXP70573.1|752807_753350_+|Putative-5'(3')-deoxyribonucleotidase
MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPYAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
>CP031670.1|AXP70572.1|751398_752457_+|Histidinol-phosphate-aminotransferase
MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSPKVKEAISAHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLEGILKEVNEDTSLVWLCNPNNPTGTYFNHESLDSFLSQVPPHVPVIIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRTFSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVAALEDQQYLKEVTHKNSVERERFYQLPQSEYFLPSQTNFIFVKTKRVNELYEALLNVGCITRPFPTGVRITIGFKEQNDKMLEVLSNFKYE
>CP031670.1|AXP70571.1|749644_751159_+|Choline-transport-system-permease-protein-OpuBB
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK
>CP031670.1|AXP70570.1|748674_749652_+|Choline-transport-ATP-binding-protein-OpuBA
MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLEMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQLLSESERVIVMQEDSVGQYVIDRKDIFKYLSQKKEVAQHD
>CP031670.1|AXP70569.1|746671_748453_+|ATP-dependent-DNA-helicase-RecQ
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEILMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV
>CP031670.1|AXP70568.1|744782_746660_+|putative-ABC-transporter-ATP-binding-protein-YjjK
MEAYKIEHLNKSYADKTIFDNLDLSISEGEKIGLVGINGTGKSTLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQYEQAVQAYADDQSDKLFKRMMDAQDAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELNRGKLASYPGNYESYIEMRAEREVTLQKQQQKQRALYKEELAWMRAGAKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKVLFEHLTEIIQKGERIGVVGPNGAGKTTLLNILSGEDQQFEGKLKTGQTVKVAYFKQTDETLDRDIRMIDYLREESEIAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQSYWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQQSKSSTTVRKKNGLSYKEKLEYEQLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIKEQQ
>CP031670.1|AXP70567.1|742565_744506_+|Lipoteichoic-acid-synthase
MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNVESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMAASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALASEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPKANSKK
>CP031670.1|AXP70566.1|741087_742092_+|KipI-antagonist
MSIIIEKSGLFSSFQDFGRRGYEHDGVIPCGALDTLAHEIANRLVANDKNEATLEMTNKMATIRFTEPTLIALAGGNVKAYTEHMTISPYKLYLLDKGDVLKFRETSYTSRVYLAVGGGFELDAWLGSNSTDFNVKIGGFKGRTLQDGDEIKLKRDYTARHHKLFENLAHTKQTDWGIDGYALSFNYMSDVFHVVKNKGTEDFKEDAIQRFVKHDYKVTSKANRMGMMLEGEKIKAFYEDMPPYQTVKKGTIQIKRDGTPIILLNDHYTLGSYPQIGTIASYHLTKLAQKPQGSRLKFQFIDILTAEKNLVKYSNWLNQLFHGIEYRMQLEMMK
>CP031670.1|AXP70565.1|740393_741104_+|Kinase-A-inhibitor
MKIYSQGDQAIVVAIEKEVSKSLTEDLLTLRSYLIEQNYPFIIEIVPSESDMMIVYDARDMIKHHNIQSPFLYMKALIESIHLNIKHDFNQQDLIEIPIVYGSKYGPDLESLLKHYKIKLETFIELHSKAQYFVSMMGYSPGFPYLTGLNKKLYINHTSKQKKFIPAGSVVLEGKKCGIVTTDTINDWLVIGYTPLSLFNPKESDFARLKLGDNIKFRPINENELEVGAFKDVNHN
>CP031670.1|AXP70564.1|739425_740034_+|hypothetical-protein
MQLFETMKIDNGHIPRLTYHTNRIKCSSERLNFKFDEHAWRNELNDVTTKYHSGQYRLKIVLNAESKFETIVSPLPEKSSFTAKFQVLPKVVNPTFIKNKTTERKHLAHNHETDLILLTSEDGKVLEFDIGNIVIEEDGKWYTPSYKDDFLKGCMRDYLIDSDKLVEKDFNKNELIYKYHNNEIRLFLINSLREVADVHLCL
>CP031670.1|AXP70574.1|754029_754947_-|Putative-lipid-kinase
MENKYTHGVLFYHEHSGLKNINQGIGEVTTALSSICKHLSIQLSENEGDIIKYCQEIKTKNYAKDVDILFILGGDGTVNELINGVMTHDLQLPIGILPGGTFNDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYIGSTVKTLLNPTQFNYQLSIDDKTYSGETTMILTANGPFIGGSRIPLTDLSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPAMKVDIDGEISLETPIDIEVIPNAIQLLTVNDL
>CP031670.1|AXP70575.1|755216_756722_-|Di-/tripeptide-transporter
MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLGAVFIIIGHICLSLPFALIGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFVIFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMKPTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYFTLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGWKTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGIVGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNASAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAFSPLIIKAMKGIR
>CP031670.1|AXP70576.1|757062_757563_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase
MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNSKYEKIAEHRLMNHDLYPEKIDNR
>CP031670.1|AXP70577.1|757582_758449_-|EamA-like-transporter-family-protein
MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLFFIYKYHQPMFGRLSSQPLLITRSTLGLIGVLLNIYAIDHMVLSDADSLMKLNPFWTILLSIVFLHEKVRKYQITAMIIAILGMLLIVKPEFSSSMIPSLAGLFSGIFAASAYTCVRALSTREAPYTIVFYFSLFSVIVLIPFTAYTYEPMSQMQILYLLGAGLAAAVGQIGVTLAYSFAAAKDISIFTYASIIFTAILGFILFGESPDFYATLGYVVIIGASYYMFEKARRDAKIIKK
>CP031670.1|AXP70578.1|759249_759648_+|ribonucleotide-reductase-stimulatory-protein
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
>CP031670.1|AXP70579.1|759610_761716_+|Ribonucleoside-diphosphate-reductase-subunit-alpha-2
MKTMEEKKYNHIELNNEVTKRREDGFFSLEKDQEALVAYLEEVKDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAIVALYLANGNKAQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMVANPNVEKKKKNAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNKLLSVEECTSCSI
>CP031670.1|AXP70580.1|761833_762805_+|Ribonucleoside-diphosphate-reductase-subunit-beta
MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVKGDGYVLALNVEALQDDDFVFDNK
>CP031670.1|AXP70581.1|763470_764484_+|Fe(3+)-dicitrate-transport-system-permease-protein-FecD
MIMIIINLKGEKFVMKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVSPTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLRTNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVVTVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNYAQQ
>CP031670.1|AXP70582.1|764470_765427_+|Iron-uptake-system-permease-protein-FeuC
MRNNNKKIMLLIAVTLLISMLYLFVGIDFEIFEYQFSSRLRKFILIILVGAAIATSVVIFQAITNNRLLTPSIMGLDAVYLFIKVLPVFLFGIQSVWVTNVYLNFILTLITMVLFALILFQGIFKIGHFSIYFILLIGVLLGTFFRSITGFIQLIMDPESFLAIQSSMFANFNASNSNLVTFSAVLLVILLVITILLLPYLDVLLLGRAEAINLGISYEKLTRILLVIVSVLVSVSTALVGPITFLGLLTVNLAHELMKTYEHKYILIATICLSWISLFSAQWVVESVFEATTEMSILIDLIGGSYFIYLLVRRRNAQ
>CP031670.1|AXP70583.1|765423_766185_+|putative-siderophore-transport-system-ATP-binding-protein-YusV
MIQVENLTKTINNQMILEDISIDIEKGKLTSLIGPNGAGKSTLLSAICRLIRFENGEVKIDGQLMSDYKNNDLSKKISILKQTNHTEMNITVEQLVNFGRFPYSKGRLTKEDHDIVNDALDLLQLQDIRNRNIKSLSGGQRQRAYIAMTIAQDTEYILLDEPLNNLDMKHAVQIMQTLKMLAHKMNKAIVIVLHDINFASCYSDQIVALKNGQLVKSDLKDNVIQSSVLSDLYDMNIQIEHIRNQRICLYFKD

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Crispr_ID: CP031670_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031670_5

794551-794631

Unclear

Consensus_repeat	Method
TTCTTTATGTTGGGGCCCCGCCAACT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of CP031670_5

>merge|CP031670|5|794551-794631|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACTTGCATTGTTTGTAGAATTTCTTTTCGAAATTCTTTATGTTGGGGCCCCGCCAACT

>CP031670|5|5|794551-794631|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACT	TGCATTGTTTGTAGAATTTCTTTTCGAAA
TTCTTTATGTTGGGGCCCCGCCAACT

Protein	Signature genes	Signature genes Name	Protein_function
CP031670.1\|AXP70608.1\|794867_795800_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
CP031670.1\|AXP70602.1\|785855_786848_+\|Peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
CP031670.1\|AXP70615.1\|802423_803368_+\|Putative-sporulation-transcription-regulator-WhiA	unknown	unknown	gnl\|CDD\|273194
CP031670.1\|AXP70614.1\|801318_802314_+\|Gluconeogenesis-factor	unknown	unknown	gnl\|CDD\|211689
CP031670.1\|AXP70609.1\|795805_796645_+\|Prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
CP031670.1\|AXP70610.1\|796652_797138_+\|Maltose-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100053
CP031670.1\|AXP70607.1\|791414_794261_+\|UvrABC-system-protein-A	unknown	unknown	gnl\|CDD\|234734
CP031670.1\|AXP70613.1\|800410_801322_+\|glmZ(sRNA)-inactivating-NTPase	unknown	unknown	gnl\|CDD\|224574
CP031670.1\|AXP70600.1\|781905_782478_+\|Putative-sigma-54-modulation-protein	unknown	unknown	gnl\|CDD\|224461
CP031670.1\|AXP70612.1\|798651_799587_+\|Thioredoxin-reductase	unknown	unknown	gnl\|CDD\|273540
CP031670.1\|AXP70599.1\|781170_781845_+\|DNA-utilization-protein-GntX	unknown	unknown	gnl\|CDD\|223970
CP031670.1\|AXP70604.1\|788269_788920_+\|5'-deoxynucleotidase-YfbR	unknown	unknown	gnl\|CDD\|378993
CP031670.1\|AXP70598.1\|780095_781178_+\|primosome-assembly-protein-PriA	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|226583
CP031670.1\|AXP70611.1\|797145_798585_+\|Anaphase-promoting-complex,-cyclosome,-subunit-3	unknown	unknown	gnl\|CDD\|276808
CP031670.1\|AXP70617.1\|804770_805640_-\|Epimerase-family-protein	unknown	unknown	gnl\|CDD\|224015
CP031670.1\|AXP70616.1\|803940_804528_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
CP031670.1\|AXP70601.1\|782891_785423_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
CP031670.1\|AXP70606.1\|789421_791407_+\|UvrABC-system-protein-B	unknown	unknown	gnl\|CDD\|235395
CP031670.1\|AXP70605.1\|788916_789153_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227234
CP031670.1\|AXP70603.1\|787256_788096_+\|Secretory-antigen-SsaA-precursor	unknown	unknown	gnl\|CDD\|226451

Protein	Function_ID	Function_description	E-value
CP031670.1\|AXP70608.1\|794867_795800_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP031670.1\|AXP70602.1\|785855_786848_+\|Peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
CP031670.1\|AXP70615.1\|802423_803368_+\|Putative-sporulation-transcription-regulator-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
CP031670.1\|AXP70614.1\|801318_802314_+\|Gluconeogenesis-factor	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
CP031670.1\|AXP70609.1\|795805_796645_+\|Prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	1.39921e-119
CP031670.1\|AXP70610.1\|796652_797138_+\|Maltose-O-acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
CP031670.1\|AXP70607.1\|791414_794261_+\|UvrABC-system-protein-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP031670.1\|AXP70613.1\|800410_801322_+\|glmZ(sRNA)-inactivating-NTPase	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
CP031670.1\|AXP70600.1\|781905_782478_+\|Putative-sigma-54-modulation-protein	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37
CP031670.1\|AXP70612.1\|798651_799587_+\|Thioredoxin-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
CP031670.1\|AXP70599.1\|781170_781845_+\|DNA-utilization-protein-GntX	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.0058e-51
CP031670.1\|AXP70604.1\|788269_788920_+\|5'-deoxynucleotidase-YfbR	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
CP031670.1\|AXP70598.1\|780095_781178_+\|primosome-assembly-protein-PriA	gnl\|CDD\|226583	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].	1.55868e-179
CP031670.1\|AXP70611.1\|797145_798585_+\|Anaphase-promoting-complex,-cyclosome,-subunit-3	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	3.57983e-06
CP031670.1\|AXP70617.1\|804770_805640_-\|Epimerase-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	1.35317e-146
CP031670.1\|AXP70616.1\|803940_804528_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP031670.1\|AXP70601.1\|782891_785423_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
CP031670.1\|AXP70606.1\|789421_791407_+\|UvrABC-system-protein-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP031670.1\|AXP70605.1\|788916_789153_+\|hypothetical-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
CP031670.1\|AXP70603.1\|787256_788096_+\|Secretory-antigen-SsaA-precursor	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	2.23913e-42

>CP031670.1|AXP70607.1|791414_794261_+|UvrABC-system-protein-A
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>CP031670.1|AXP70606.1|789421_791407_+|UvrABC-system-protein-B
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>CP031670.1|AXP70605.1|788916_789153_+|hypothetical-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>CP031670.1|AXP70604.1|788269_788920_+|5'-deoxynucleotidase-YfbR
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>CP031670.1|AXP70603.1|787256_788096_+|Secretory-antigen-SsaA-precursor
MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVTKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>CP031670.1|AXP70602.1|785855_786848_+|Peptide-chain-release-factor-2
MAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>CP031670.1|AXP70601.1|782891_785423_+|preprotein-translocase-subunit-SecA
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>CP031670.1|AXP70600.1|781905_782478_+|Putative-sigma-54-modulation-protein
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ
>CP031670.1|AXP70599.1|781170_781845_+|DNA-utilization-protein-GntX
MNNCLSCGAKLYENITIYNLFKKPNRLCDRCKENWDNIKLDIKARRCSRCLKHLNQDEAYCLDCKFLSAHFNLMEQLYCQFQYDGLMKEMIHQYKFLKDYYLCELLAHLIEIPQTSYDYIVPIPSSPAHDLSRTFNPVEAVLKAKGIRFDKILKMSNRPKQSHLTKKERLADENPFIIDTELDLNGKEILLVDDIYTTGLTIHRAGCKLYAKNIRKFKVFAFAR
>CP031670.1|AXP70598.1|780095_781178_+|primosome-assembly-protein-PriA
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVSPRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSKVEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETMIKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE
>CP031670.1|AXP70608.1|794867_795800_+|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP031670.1|AXP70609.1|795805_796645_+|Prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGSVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>CP031670.1|AXP70610.1|796652_797138_+|Maltose-O-acetyltransferase
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP031670.1|AXP70611.1|797145_798585_+|Anaphase-promoting-complex,-cyclosome,-subunit-3
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDVMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP031670.1|AXP70612.1|798651_799587_+|Thioredoxin-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP031670.1|AXP70613.1|800410_801322_+|glmZ(sRNA)-inactivating-NTPase
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP031670.1|AXP70614.1|801318_802314_+|Gluconeogenesis-factor
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP031670.1|AXP70615.1|802423_803368_+|Putative-sporulation-transcription-regulator-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP031670.1|AXP70616.1|803940_804528_+|ATP-dependent-Clp-protease-proteolytic-subunit
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP031670.1|AXP70617.1|804770_805640_-|Epimerase-family-protein
MVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKALFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGIILSNEGGALQTMKLPYEYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE

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Crispr_ID: CP031670_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031670_6

843081-843162

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031670_6

>merge|CP031670|6|843081-843162|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>CP031670|6|6|843081-843162|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP031670.1\|AXP70661.1\|845661_846357_+\|Methionine-import-system-permease-protein-MetP	unknown	unknown	gnl\|CDD\|224922
CP031670.1\|AXP70656.1\|841983_842097_+\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP70659.1\|844097_844394_+\|Thioredoxin	unknown	unknown	gnl\|CDD\|239245
CP031670.1\|AXP70667.1\|851436_852678_+\|putative-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
CP031670.1\|AXP70649.1\|837610_838105_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372596
CP031670.1\|AXP70660.1\|844643_845669_+\|Methionine-import-ATP-binding-protein-MetN-2	unknown	unknown	gnl\|CDD\|224058
CP031670.1\|AXP70657.1\|842098_842977_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226395
CP031670.1\|AXP70655.1\|841539_841920_+\|Glycine-cleavage-system-H-protein	unknown	unknown	gnl\|CDD\|234918
CP031670.1\|AXP70666.1\|850014_851322_+\|FeS-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|223791
CP031670.1\|AXP70658.1\|843715_844105_+\|Ribonuclease-M5	unknown	unknown	gnl\|CDD\|224572
CP031670.1\|AXP70662.1\|846374_847196_+\|Methionine-binding-lipoprotein-MetQ-precursor	unknown	unknown	gnl\|CDD\|224381
CP031670.1\|AXP70663.1\|847549_847744_+\|CsbD-like-protein	unknown	unknown	gnl\|CDD\|225777
CP031670.1\|AXP70665.1\|849155_849917_+\|Vegetative-protein-296	unknown	unknown	gnl\|CDD\|223473
CP031670.1\|AXP70650.1\|838503_838926_-\|Organic-hydroperoxide-resistance-protein-like-protein	unknown	unknown	gnl\|CDD\|274649
CP031670.1\|AXP70648.1\|836838_837456_-\|Arginine-exporter-protein-ArgO	unknown	unknown	gnl\|CDD\|224198
CP031670.1\|AXP70664.1\|847976_848828_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224946
CP031670.1\|AXP70652.1\|839872_840412_+\|putative-oxidoreductase	unknown	unknown	gnl\|CDD\|380312
CP031670.1\|AXP70653.1\|840561_840882_-\|Thioredoxin-like-protein-YdbP	unknown	unknown	gnl\|CDD\|239245
CP031670.1\|AXP70654.1\|841025_841382_+\|Regulatory-protein-MgsR	unknown	unknown	gnl\|CDD\|239334
CP031670.1\|AXP70651.1\|839073_839790_+\|3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|184156

Protein	Function_ID	Function_description	E-value
CP031670.1\|AXP70661.1\|845661_846357_+\|Methionine-import-system-permease-protein-MetP	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100
CP031670.1\|AXP70659.1\|844097_844394_+\|Thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
CP031670.1\|AXP70667.1\|851436_852678_+\|putative-cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
CP031670.1\|AXP70649.1\|837610_838105_-\|hypothetical-protein	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
CP031670.1\|AXP70660.1\|844643_845669_+\|Methionine-import-ATP-binding-protein-MetN-2	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	3.37873e-170
CP031670.1\|AXP70657.1\|842098_842977_+\|hypothetical-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	1.16579e-75
CP031670.1\|AXP70655.1\|841539_841920_+\|Glycine-cleavage-system-H-protein	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	2.81086e-68
CP031670.1\|AXP70666.1\|850014_851322_+\|FeS-cluster-assembly-protein-SufB	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	8.11734e-136
CP031670.1\|AXP70658.1\|843715_844105_+\|Ribonuclease-M5	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	6.789e-37
CP031670.1\|AXP70662.1\|846374_847196_+\|Methionine-binding-lipoprotein-MetQ-precursor	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	2.15951e-112
CP031670.1\|AXP70663.1\|847549_847744_+\|CsbD-like-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
CP031670.1\|AXP70665.1\|849155_849917_+\|Vegetative-protein-296	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
CP031670.1\|AXP70650.1\|838503_838926_-\|Organic-hydroperoxide-resistance-protein-like-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
CP031670.1\|AXP70648.1\|836838_837456_-\|Arginine-exporter-protein-ArgO	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	9.12336e-62
CP031670.1\|AXP70664.1\|847976_848828_-\|hypothetical-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	4.58436e-76
CP031670.1\|AXP70652.1\|839872_840412_+\|putative-oxidoreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
CP031670.1\|AXP70653.1\|840561_840882_-\|Thioredoxin-like-protein-YdbP	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.70086e-24
CP031670.1\|AXP70654.1\|841025_841382_+\|Regulatory-protein-MgsR	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
CP031670.1\|AXP70651.1\|839073_839790_+\|3-dehydroquinate-dehydratase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	1.26721e-148

>CP031670.1|AXP70657.1|842098_842977_+|hypothetical-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLDDLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>CP031670.1|AXP70656.1|841983_842097_+|hypothetical-protein
MKEKLLGTIIWSIATFYYSRMMEIMNLAILKIKIGGS
>CP031670.1|AXP70655.1|841539_841920_+|Glycine-cleavage-system-H-protein
MAVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE
>CP031670.1|AXP70654.1|841025_841382_+|Regulatory-protein-MgsR
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>CP031670.1|AXP70653.1|840561_840882_-|Thioredoxin-like-protein-YdbP
MQSIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>CP031670.1|AXP70652.1|839872_840412_+|putative-oxidoreductase
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>CP031670.1|AXP70651.1|839073_839790_+|3-dehydroquinate-dehydratase
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGVPQAPGQIDVTDLKAQVTLY
>CP031670.1|AXP70650.1|838503_838926_-|Organic-hydroperoxide-resistance-protein-like-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>CP031670.1|AXP70649.1|837610_838105_-|hypothetical-protein
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>CP031670.1|AXP70648.1|836838_837456_-|Arginine-exporter-protein-ArgO
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGETQIMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF
>CP031670.1|AXP70658.1|843715_844105_+|Ribonuclease-M5
MMAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>CP031670.1|AXP70659.1|844097_844394_+|Thioredoxin
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>CP031670.1|AXP70660.1|844643_845669_+|Methionine-import-ATP-binding-protein-MetN-2
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEQGPVTQVFENPQHTVTKRFVKDDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>CP031670.1|AXP70661.1|845661_846357_+|Methionine-import-system-permease-protein-MetP
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>CP031670.1|AXP70662.1|846374_847196_+|Methionine-binding-lipoprotein-MetQ-precursor
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>CP031670.1|AXP70663.1|847549_847744_+|CsbD-like-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>CP031670.1|AXP70664.1|847976_848828_-|hypothetical-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTSLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFAGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>CP031670.1|AXP70665.1|849155_849917_+|Vegetative-protein-296
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>CP031670.1|AXP70666.1|850014_851322_+|FeS-cluster-assembly-protein-SufB
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDENASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>CP031670.1|AXP70667.1|851436_852678_+|putative-cysteine-desulfurase
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDVDQLINALKQTKEFFSYEF

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Crispr_ID: CP031670_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031670_7

1082439-1082526

Orphan

Consensus_repeat	Method
CCCCTAACAACTAAAAGTTGTAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031670_7

>merge|CP031670|7|1082439-1082526|CRISPRCasFinder
CCCCTAACAACTAAAAGTTGTAAGGAAGGAGAGGGATACATGCGCCGAGCACATGCATAAAATCCCCTAACAACTAAAAGTTGTAAGG

>CP031670|7|7|1082439-1082526|CRISPRCasFinder
CCCCTAACAACTAAAAGTTGTAAGG	AAGGAGAGGGATACATGCGCCGAGCACATGCATAAAAT
CCCCTAACAACTAAAAGTTGTAAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP031670.1\|AXP70899.1\|1079961_1081362_-\|Putative-HMP/thiamine-import-ATP-binding-protein-YkoD	unknown	unknown	gnl\|CDD\|213192
CP031670.1\|AXP70894.1\|1074538_1075567_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
CP031670.1\|AXP70897.1\|1077650_1078898_+\|Phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|237507
CP031670.1\|AXP70908.1\|1089118_1090480_+\|Putative-cytochrome-bd-menaquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
CP031670.1\|AXP70906.1\|1086732_1088451_+\|Phosphoenolpyruvate-protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
CP031670.1\|AXP70910.1\|1091628_1092291_+\|Ktr-system-potassium-uptake-protein-A	unknown	unknown	gnl\|CDD\|223643
CP031670.1\|AXP70895.1\|1075569_1076136_+\|Phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|223376
CP031670.1\|AXP70893.1\|1073061_1074546_+\|Amidophosphoribosyltransferase-precursor	unknown	unknown	gnl\|CDD\|235984
CP031670.1\|AXP70900.1\|1081376_1081952_-\|Putative-HMP/thiamine-permease-protein-YkoE	unknown	unknown	gnl\|CDD\|227065
CP031670.1\|AXP70901.1\|1082535_1082670_-\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP70892.1\|1070893_1073083_+\|Phosphoribosylformylglycinamidine-synthase-2	unknown	unknown	gnl\|CDD\|234921
CP031670.1\|AXP70898.1\|1079162_1079969_-\|Putative-HMP/thiamine-permease-protein-YkoC	unknown	unknown	gnl\|CDD\|223692
CP031670.1\|AXP70903.1\|1084541_1085714_+\|Ribosomal-RNA-large-subunit-methyltransferase-I	unknown	unknown	gnl\|CDD\|224017
CP031670.1\|AXP70904.1\|1085767_1086310_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368297
CP031670.1\|AXP70891.1\|1070229_1070901_+\|Phosphoribosylformylglycinamidine-synthase-1	unknown	unknown	gnl\|CDD\|235140
CP031670.1\|AXP70896.1\|1076150_1077629_+\|Bifunctional-purine-biosynthesis-protein-PurH	unknown	unknown	gnl\|CDD\|234854
CP031670.1\|AXP70909.1\|1090476_1091496_+\|Putative-cytochrome-bd-menaquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224213
CP031670.1\|AXP70905.1\|1086463_1086730_+\|Phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|237503
CP031670.1\|AXP70902.1\|1082821_1084117_+\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP70907.1\|1088687_1088921_-\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|239274

Protein	Function_ID	Function_description	E-value
CP031670.1\|AXP70899.1\|1079961_1081362_-\|Putative-HMP/thiamine-import-ATP-binding-protein-YkoD	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	1.67975e-64
CP031670.1\|AXP70894.1\|1074538_1075567_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
CP031670.1\|AXP70897.1\|1077650_1078898_+\|Phosphoribosylamine--glycine-ligase	gnl\|CDD\|237507	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional.	0
CP031670.1\|AXP70908.1\|1089118_1090480_+\|Putative-cytochrome-bd-menaquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	2.48829e-165
CP031670.1\|AXP70906.1\|1086732_1088451_+\|Phosphoenolpyruvate-protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
CP031670.1\|AXP70910.1\|1091628_1092291_+\|Ktr-system-potassium-uptake-protein-A	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	4.35421e-66
CP031670.1\|AXP70895.1\|1075569_1076136_+\|Phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|223376	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism].	7.23817e-92
CP031670.1\|AXP70893.1\|1073061_1074546_+\|Amidophosphoribosyltransferase-precursor	gnl\|CDD\|235984	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.	0
CP031670.1\|AXP70900.1\|1081376_1081952_-\|Putative-HMP/thiamine-permease-protein-YkoE	gnl\|CDD\|227065	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism].	4.34592e-70
CP031670.1\|AXP70892.1\|1070893_1073083_+\|Phosphoribosylformylglycinamidine-synthase-2	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
CP031670.1\|AXP70898.1\|1079162_1079969_-\|Putative-HMP/thiamine-permease-protein-YkoC	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	7.39205e-29
CP031670.1\|AXP70904.1\|1085767_1086310_+\|hypothetical-protein	gnl\|CDD\|368297	pfam05128, DUF697, Domain of unknown function (DUF697). Family of bacterial hypothetical proteins that is sometimes associated with GTPase domains.	0.00779365
CP031670.1\|AXP70891.1\|1070229_1070901_+\|Phosphoribosylformylglycinamidine-synthase-1	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	6.76028e-139
CP031670.1\|AXP70896.1\|1076150_1077629_+\|Bifunctional-purine-biosynthesis-protein-PurH	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
CP031670.1\|AXP70909.1\|1090476_1091496_+\|Putative-cytochrome-bd-menaquinol-oxidase-subunit-II	gnl\|CDD\|224213	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion].	6.42118e-76
CP031670.1\|AXP70905.1\|1086463_1086730_+\|Phosphocarrier-protein-HPr	gnl\|CDD\|237503	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional.	2.44795e-51
CP031670.1\|AXP70903.1\|1084541_1085714_+\|Ribosomal-RNA-large-subunit-methyltransferase-I	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	5.6543e-145
CP031670.1\|AXP70907.1\|1088687_1088921_-\|glutaredoxin-3	gnl\|CDD\|239274	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein.	5.00495e-16

>CP031670.1|AXP70900.1|1081376_1081952_-|Putative-HMP/thiamine-permease-protein-YkoE
MSKGLKLSEILVTVLISVVFAVIYNLWWFVYNGVQATGLHLEQLTNGVWFMAAIVCYLIIPKPGIALLAEFAAGAGETIIMGRFDIPTIVYAFIQGLACELVFAIFKYQSRSVMVAMLAGFCTAIAAFPIDYFYGYLNEVAGWNLTLFIVFRLISGAVVAGVLSYLLVKALDKTGVTKLFRPAAKEDYDNL
>CP031670.1|AXP70899.1|1079961_1081362_-|Putative-HMP/thiamine-import-ATP-binding-protein-YkoD
MLKVSDLRLKYPSGQRKIFDHLNITIQDKEKVLLLGPSGCGKSTLLNVLSGIVPNLIELPMKYDELIVDPLSGVIFQDPDSQFCMPKVYEELAFVLENRQLPREDMDALIINALNMVNLNVTPETYIKDLSGGMKQKLAIVETILQQSKTLFLDEPTAMLDVQATEDLWTKLIELWEDQTVVIVEHKVKHIWNHVDRVILMDYNGNIIADECPEIILQKYVHLLSEYGVWHPRAWEFAPSRVDFPTTNSHLLQFKNGRIIRGKSTLLSFSDLEIGLGEWITITGANGSGKTTLLESIMQLIKYQGDVYFENQRLTKIKHAAKHMYLVYQNPELQFITNSVYDEINIHFNHLSKDQSDDETIQLLKLLDLQNVKDQHPYELSIGQKRRLSVATALSSKADIIFLDEPTFGLDSHNTFQLIKLFQKRINLGQSIVMVTHDDEIIERYPSRRLKISDGALLDCDGDTNV
>CP031670.1|AXP70898.1|1079162_1079969_-|Putative-HMP/thiamine-permease-protein-YkoC
MYEQWKVRQSFVDDVNIITKLFLGIILFFFIIFVHNFDFMLYITILMLVFLLMFNGTQFKITAIFITISIGFALLSSLFMILYGNGSHTILKFGFIHITTESLVRGLHVSLRTIAISFFGILIALTSQVVMIFYSLMQHLKVKSKVAYAFMAAIRMIPLMISSLIQLRRSLKMRYQMIDAANYRGLKRFKHLIIPLLSQNIRKAHQLSVAMESKGFRDGPRTYYYNVPFSYKDIIFIIVLIAIITMAYYCSITLPITGIDDVRLGRVG
>CP031670.1|AXP70897.1|1077650_1078898_+|Phosphoribosylamine--glycine-ligase
MNVLVIGAGGREHALAYKLNQSNLVKQVFVIPGNEAMTPIAEVHTEISESDHQAILDFAKRQNVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEFKWKNESIVGVMLASKGYPDAYEKGHKVSGFDLNENYFVSGLKKQGDTFVTSGGRVILAIGKGDNVQDAQRDAYKKVSQIQSDHLFYRHDIANKALQLK
>CP031670.1|AXP70896.1|1076150_1077629_+|Bifunctional-purine-biosynthesis-protein-PurH
MKKAILSVSNKTGIVEFAKALTQLNYELYSTGGTKRILDEANVPVRSVSDLTHFPEIMDGRVKTLHPAVHGGILADRNKPQHLNELSEQHIDLIDMVVVNLYPFQQTVANPDVTMDEAIENIDIGGPTMLRAAAKNYKHVTTIVHPADYQEVLTRLRNDSLDESYRQSLMIKVFEHTAEYDEAIVRFFKGDKETLRYGENPQQSAYFVRTSNAKHTIAGAKQLHGKQLSYNNIKDADATLALVKKFDTPATVAVKHMNPCGVGIGDTIEQAFQHAYEADSQSIFGGIVALNRAVTPELAEQLHSIFLEVIIAPKFTDEALDILKQKKNVRLLEIDMTIDSNEEEFVSVSGGYLVQDKDNYVVPKEEMKVVTEVAPTDEQWEAMLLGWKVVPSVKSNAIILSNNKQTVGIGAGQMNRVGAAKIALERAIEINDHVALVSDGFFPMGDTVELAAQHGIKAIIQPGGSIKDQDSIDMANKHGIAMVVTGTRHFKH
>CP031670.1|AXP70895.1|1075569_1076136_+|Phosphoribosylglycinamide-formyltransferase
MVKIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQNAFCIDRAKKHDIPVYINEPKQFDSKAAYEQHLVTLLNEDKVEWIILAGYMRLIGPDLLASFEGKILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDSGMDTGEIIEQRKCDIRPDDSKEQLEEKVKKLEYELYPSVIAKIVK
>CP031670.1|AXP70894.1|1074538_1075567_+|Phosphoribosylformylglycinamidine-cyclo-ligase
MSKAYEQSGVNIHAGYEAVERMSSHVKRTMRKEVIGGLGGFGATFDLSQLNMTAPVLVSGTDGVGTKLKLAIDYGKHDSIGIDAVAMCVNDILTTGAEPLYFLDYIATNKVVPEVIEQIVKGISDACVETNTALIGGETAEMGEMYHEGEYDVAGFAVGAVEKDDYVDGSEVKEGQVVIGLASSGIHSNGYSLVRKLINESGIDLASNFDNRPFIDVFLEPTKLYVKPVLALKKEVSIKAMNHITGGGFYENIPRALPTGYAARIDTTSFPTPKIFDWLQQQGNIDTNEMYNIFNMGIGYTVIVDEKDVSRALKILAEQNVEAYQIGHIVKNESTAIELLGV
>CP031670.1|AXP70893.1|1073061_1074546_+|Amidophosphoribosyltransferase-precursor
MFNYSGLNEECGVFGIWNHPEAAQLTYMGLHSLQHRGQEGAGIVVSDQNELKGERGLGLLTEAIKDDQMERLKGYQHAIGHVRYATSGNKGIENIQPFLYHFYDMSVGICHNGNLINAKSLRQNLEKQGAIFHSSSDTEVIMHLIRRSKAPTFEEALKESLRKVKGGFTFAILTKDALYGAVDPNAIRPLVVGKMKDGTYILASETCAIDVLGAEFVQDIHAGEYVVINDKGITVKSYTHHTTTAISAMEYIYFARPDSTIAGKNVHAVRKASGKKLAQESPVNADMVIGVPNSSLSAASGYAEEIGLPYEMGLVKNQYVARTFIQPTQELREQGVRVKLSAVKDIVDGKNIILVDDSIVRGTTIRRIVKMLKDSGANKVHVRIASPEFMFPSFYGIDVSTTAELISASKSPEEIKDYIGADSLAYLSVDGLIESIGLDYDAPYSGLCVESFTGDYPAGLYDYEANYKAHLSHRQKQYISKNKHFFDSEGNLNV
>CP031670.1|AXP70892.1|1070893_1073083_+|Phosphoribosylformylglycinamidine-synthase-2
MSKFIEPSVEEIKLEKVYQDMGLSDQEYEKVCDILGRQPNFTETGIFSVMWSEHCSYKHSKPFLKQFPTSGDHVLMGPGEGAGVVDIGDNQAVVFKVESHNHPSAIEPYQGAATGVGGIIRDIVSIGARPINLLNSLRFGELDNKQNQRLLKGVVKGIGGYGNCIGIPTTAGEIEFDERYDGNPLVNAMCVGVINHDMIQKGTAKGVGNSVIYVGLKTGRDGIHGATFASEELTEESESKRPSVQIGDPFVGKKLMEATLEAITFDELVGIQDMGAAGLTSSSSEMAAKGGSGLHLRLEQVPTREPGISPYEMMLSETQERMLLVVEKGTEQKFLDLFDKHELDSAVIGEVTDTNRFVLTYDDEVYADIPVEPLADEAPVYILEGEEKDYNTSKNDYTHIDVKDTFFKLLKHPTIASKHYLYDQYDQQVGANTIIKPGLQASVVRVEGTNKAIASTIDGEARYVYNNPYEGGKMVVAEAYRNLIAVGATPLAMTDCLNYGSPEKKEIYQQLIDSTKGMAEACDILKTPVVSGNVSLYNETKGTSIFPTPVVGMVGLIENVNYLNDFEPQVGDKLYLIGDTKDDFGGSQLEKLIYGKVNHEFESLDLSSEVEKGESIKTAIREGLLSHVQTVGKGGLLITLAKLSAHYGLGLKSSIDITNAQLFSETQGRYVVSVKSGKTLNIDNAIEIGLLTDSDNFKVTTPYTEISENVSDIKQIWEGAIAQCLTTQD
>CP031670.1|AXP70891.1|1070229_1070901_+|Phosphoribosylformylglycinamidine-synthase-1
MKFAVLVFPGSNCDRDMFNAAIKSGVEAEYVDYREISLSGFDGVLIPGGFSFGDYLRSGAMASVAPIISEVKRLAAEGKPVLGVCNGFQILTEIGLLPGALLHNDSHLFISRNEELEIVNNQTAFTNLYEQGEKVIYPVAHGEGHYYCTDEIYQQLKANNQIILKYVNNPNGSYDDIAGIVNEKGNVCGMMPHPERALETLLGTDSGVKLFEAMVKSWREQHV
>CP031670.1|AXP70901.1|1082535_1082670_-|hypothetical-protein
MSNENQNKKAAEKAKEVEEKLKDKKEEKTEDINQTKQDIQDTLN
>CP031670.1|AXP70902.1|1082821_1084117_+|hypothetical-protein
MSFLRKHAEIIFSYLIGIVSLFTGLIILINLPLIKQLNGGKKVDTHVHNVWEFLNAFFSEIIKVMSRFIGNFPIVSAIVIIIFGILVMLIGHTLLRTIKYDYDISIFFLVIGIMYFIITLILMTQVYGFFAVIFIIPFTIHIGYIVYKDELNQENVKNHFMWIIVSYGISYLITQIALYGRIDANEIESIDILSVNAFFIIMWLLGQMAIWNFLFLRRALPLTKQELGEEEPELSRTSKGNVTNQTKIHLKQLQDKTTEYARKTRRSVDLDKIRAKRDKFKKKVNDIIDIQEDDIPDWMRKPKWVKPMYVELFCGVVIFLFTFLEFNNRNALFVSGDWKLSQTQYVIEWVTLLILLFIIIAYIATTLTFHLKGKFYYLQLFMGSILFFKLLTEFINIMIHGLLLSVFITPTLLLMLLAIIISYSLQLRERP
>CP031670.1|AXP70903.1|1084541_1085714_+|Ribosomal-RNA-large-subunit-methyltransferase-I
MKIATLNKGKETKYFNGYPLIEEEDIYSQDHLKEGDIFQIVTDKSQYVATAYVGRQHKGLGWVLTYDKAQQINTAFFVKLFNTALAERDYYFNIDGTNAFRLFNAEGDGVGGLTIDNYDGHLLIQWYSKGIYKFKYAILEAVRKVFDYKSIYEKVRFKDSEYSGGFVEGDAPEFPIVIEENFTFYNVDLEDGLMTGIFLDQKEVRKKLRDQYAKERHVLNLFSYTGAFSAIAASEASSTTSVDLANRSRSLTEENFGLNAIDPKSQYIYVMDTFDFYKYAARHGHSYDTIVIDPPSFARNKKRTFSVQKDYDKLINGALNILSSEGTLLLCTNASVYPLKQFKNTIKKTLEESGVDYELTEVMGLPKDFKTHPHYKPSKYLKAVFVNIRH
>CP031670.1|AXP70904.1|1085767_1086310_+|hypothetical-protein
MGFKNNLTSNLTNKIGNSVFKIENVDGKGAMPTTIQELRERRQRAEAIVKRKSLMSSTMSVVPIPGLDFGVDLKLMKDIIEDVNKIYGLDHKQVNSLGDDVKERIMSAAAIQGSQFIGKRISNAFLKIVIRDVAKRTAAKQTKWFPVVGQAVSASISYYFMNKIGKDHIQKCENVIKNVM
>CP031670.1|AXP70905.1|1086463_1086730_+|Phosphocarrier-protein-HPr
MEQNSYVIIDETGIHARPATMLVQTASKFDSDIQLEYNGKKVNLKSIMGVMSLGVGKDAEITIYADGSDESDAIQAISDVLSKEGLTK
>CP031670.1|AXP70906.1|1086732_1088451_+|Phosphoenolpyruvate-protein-phosphotransferase
MSKLIKGIAASDGVAIAKAYLLVEPDLTFDKNEKVTDVEGEVAKFNSAIEASKVELTKIRNNAEVQLGADKAAIFDAHLLVLDDPELIQPIQDKIKNENANAATALTDVTTQFVTIFESMDNEYMKERAADIRDVSKRVLSHILGVELPNPSMIDESVVIVGNDLTPSDTAQLNKEFVQGFATNIGGRTSHSAIMSRSLEIPAIVGTKSITQEVKQGDMIIVDGLNGDVIVNPTEDELIAYQDKRERYFADKKELQKLRDADTVTVDGVHAELAANIGTPNDLPGVIENGAQGIGLYRTEFLYMGRDQMPTEEEQFEAYKEVLEAMGGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLCLAQQDIFRPQLRALLRASVYGKLNIMFPMVATINEFREAKAILLEEKENLKNEGHDISDDIELGIMVEIPATAALADVFAKEVDFFSIGTNDLIQYTLAADRMSERVSYLYQPYNPSILRLVKQVIEASHKEGKWTGMCGEMAGDETAIPLLLGLGLDEFSMSATSILKARRQINGLSKNEMTELANRAVDCATQEEVIELVNNYVK
>CP031670.1|AXP70907.1|1088687_1088921_-|glutaredoxin-3
MSEIIVYTQNDCPPCTFVKNYLNEHHIDFEERNINNQQYRNEMIDFDAFSTPFILLNGNPMYHVDLDEINKVLNIQD
>CP031670.1|AXP70908.1|1089118_1090480_+|Putative-cytochrome-bd-menaquinol-oxidase-subunit-I
MDTVEISRFLTAMTLAVHIIFATIGVGMPLMFAIAEFLGIRKNDLQYIAMAKRWAKAYTITVAVGVVTGTIIGLQLSLIWPTFMEMGGHVIALPLFMETFAFFFEAIFLSIYLYTWDRFKNKWTHFLISIPVIIGGSFSAFFITSVNSFMNTPAGFELKNGKMVNVQPIEAMFNPSFIVRSFHVITTAGMTMAFVIASIAAFKLLRNRQPKDTVYHKKALKMSMIVGFFSTLLSMLAGDLSAKFLHKFQPEKLAAYEWHFDTSSHAKLLLFGVLDEKTQQVKGAIELPGLLSFLADNSVKTKVQGLNDFPKSLHPPMIVHYFFDLMVTMGILCFVISGVYVLTLMFKKLRKFSTHKWMLYGILLTGPASMLAIEFGWFLTEMGRQPWIVRGYMRVAEAATQAGGITFVTILFGILYIILMYTCAYVLIRMFKNKPAYEDVNRLAKKQGGEIEK
>CP031670.1|AXP70909.1|1090476_1091496_+|Putative-cytochrome-bd-menaquinol-oxidase-subunit-II
MIYAFIGITVLWLFLFCYIIIASIDFGAGFFALHSKLTGDEKKINHLISRYLNPVWEVTNVFFVFFFVGFVGFFPESIKYLGTVLLIPGSIALIMISLRNSFYAFENYGQDTKLAWMIMYGVSGLLIPASLSTALTITEGGYINVRNNVIDLDWVQLLLSPFAWSVVFLAIISVLYISSGFLTYYAKKANDEPAYNLTRQWHIFLGPPMIIICLFVFLSLRIQNSEHFYSAVFDYWWMFGISFLFFALASLLTFFKKKHGLAFVFVILQMMFAFFGYGISKLPYLLYPFVKITDAYVNPEMGWTLVIVFILGLLLLLPSLILLLRLFVFDKEYVEGKKS
>CP031670.1|AXP70910.1|1091628_1092291_+|Ktr-system-potassium-uptake-protein-A
MGKEYVVIGLGRFGGSIVRELNALDMDVMAIDHDENRVNEYSDIATHAVVADTTDEAVMKSLGIRNFDHVIVAIGENIQSSTLTTLILKELGVKKVTAKAQNDYHAKILNKIGADTVVHPERDMGRRIAHNVASASVLDYLELADEHSIVELKATEKMAGQSIIDLDIRAQYGINIIAIKRGKEFIISPNPNINLEIGDILIMIGHDNDLNRFEKNIATR

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Crispr_ID: CP031670_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031670_8

1210167-1210353

Orphan

Consensus_repeat	Method
GGCGGGGCCCCAACATAGA	CRT

3 spacers

The CRISPR arrays of CP031670_8

>merge|CP031670|8|1210167-1210353|CRT
GGCGGGGCCCCAACATAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGTGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGA

>CP031670|8|1|1210167-1210353|CRT
GGCGGGGCCCCAACATAGA	GAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTG
GGGTGGGCCCCAACACAGA	AGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTT
GGCGGGGCCCCAACATAGT	GAAATTGGATTCCCAATTTCTACAGACAATGCAAGTT
GGCGGGGCCCCAACATAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP031670.1\|AXP71045.1\|1205531_1205882_+\|Complement-inhibitor-precursor	unknown	unknown	gnl\|CDD\|371594
CP031670.1\|AXP71050.1\|1209813_1210011_+\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP71046.1\|1206534_1206720_-\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP71048.1\|1208051_1209011_-\|Alpha-hemolysin-precursor	unknown	unknown	gnl\|CDD\|273388
CP031670.1\|AXP71057.1\|1217366_1217594_+\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP71055.1\|1214395_1215331_+\|Carbamate-kinase-1	unknown	unknown	gnl\|CDD\|237071
CP031670.1\|AXP71041.1\|1202344_1202674_+\|Fibrinogen-binding-protein-precursor	unknown	unknown	gnl\|CDD\|289007
CP031670.1\|AXP71042.1\|1203042_1203444_-\|FPRL1-inhibitory-protein-precursor	unknown	unknown	gnl\|CDD\|171849
CP031670.1\|AXP71049.1\|1209683_1209830_+\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP71056.1\|1215502_1217059_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224207
CP031670.1\|AXP71044.1\|1204880_1205378_+\|Fibrinogen-binding-protein-precursor	unknown	unknown	gnl\|CDD\|289007
CP031670.1\|AXP71052.1\|1211391_1212117_-\|Exotoxin-type-H-precursor	unknown	unknown	gnl\|CDD\|106307
CP031670.1\|AXP71051.1\|1210567_1211284_-\|superantigen-like-protein	unknown	unknown	gnl\|CDD\|171995
CP031670.1\|AXP71043.1\|1204115_1204622_+\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP71059.1\|1219094_1219283_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225382
CP031670.1\|AXP71054.1\|1213374_1214376_+\|Ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235269
CP031670.1\|AXP71047.1\|1207341_1207575_-\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP71058.1\|1217898_1218846_-\|C4-dicarboxylate-transporter/malic-acid-transport-protein	unknown	unknown	gnl\|CDD\|187765
CP031670.1\|AXP71060.1\|1220194_1220329_+\|Antibacterial-protein-3	unknown	unknown	gnl\|CDD\|368464
CP031670.1\|AXP71053.1\|1212211_1212937_-\|superantigen-like-protein	unknown	unknown	gnl\|CDD\|171855

Protein	Function_ID	Function_description	E-value
CP031670.1\|AXP71045.1\|1205531_1205882_+\|Complement-inhibitor-precursor	gnl\|CDD\|371594	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN. SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface. An 18 residue stretch 31-48 is crucial for SCIN activity.	2.0882e-48
CP031670.1\|AXP71056.1\|1215502_1217059_+\|hypothetical-protein	gnl\|CDD\|224207	COG1288, COG1288, Predicted membrane protein [Function unknown].	0
CP031670.1\|AXP71042.1\|1203042_1203444_-\|FPRL1-inhibitory-protein-precursor	gnl\|CDD\|171849	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed.	1.08644e-76
CP031670.1\|AXP71055.1\|1214395_1215331_+\|Carbamate-kinase-1	gnl\|CDD\|237071	PRK12353, PRK12353, putative amino acid kinase; Reviewed.	0
CP031670.1\|AXP71048.1\|1208051_1209011_-\|Alpha-hemolysin-precursor	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	4.27434e-141
CP031670.1\|AXP71044.1\|1204880_1205378_+\|Fibrinogen-binding-protein-precursor	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	5.40265e-27
CP031670.1\|AXP71052.1\|1211391_1212117_-\|Exotoxin-type-H-precursor	gnl\|CDD\|106307	PRK13349, PRK13349, superantigen-like protein; Reviewed.	1.29834e-148
CP031670.1\|AXP71051.1\|1210567_1211284_-\|superantigen-like-protein	gnl\|CDD\|171995	PRK13350, PRK13350, superantigen-like protein; Reviewed.	1.29441e-152
CP031670.1\|AXP71059.1\|1219094_1219283_+\|hypothetical-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	0.00787195
CP031670.1\|AXP71054.1\|1213374_1214376_+\|Ornithine-carbamoyltransferase	gnl\|CDD\|235269	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.	0
CP031670.1\|AXP71041.1\|1202344_1202674_+\|Fibrinogen-binding-protein-precursor	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	4.63429e-22
CP031670.1\|AXP71058.1\|1217898_1218846_-\|C4-dicarboxylate-transporter/malic-acid-transport-protein	gnl\|CDD\|187765	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. This subfamily contains bacterial C4-dicarboxylate transporters, which is part of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. It includes Tellurite resistance protein tehA; the tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.	1.14912e-83
CP031670.1\|AXP71060.1\|1220194_1220329_+\|Antibacterial-protein-3	gnl\|CDD\|368464	pfam05480, Staph_haemo, Staphylococcus haemolytic protein. This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.	6.35158e-13
CP031670.1\|AXP71053.1\|1212211_1212937_-\|superantigen-like-protein	gnl\|CDD\|171855	PRK13043, PRK13043, superantigen-like protein; Reviewed.	1.25134e-159

>CP031670.1|AXP71050.1|1209813_1210011_+|hypothetical-protein
MTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYVSLKEH
>CP031670.1|AXP71049.1|1209683_1209830_+|hypothetical-protein
MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE
>CP031670.1|AXP71048.1|1208051_1209011_-|Alpha-hemolysin-precursor
MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWIDRSSERYKIDWEKEEMTN
>CP031670.1|AXP71047.1|1207341_1207575_-|hypothetical-protein
MVFNDWEINVVYSGEHEVVTNEKSLFVIDEFYDVAIAIYYLDGKLKVAHVNYGSDFTIDVANKVFELNIQNPNVDEH
>CP031670.1|AXP71046.1|1206534_1206720_-|hypothetical-protein
MNKHINKKAAKLLEDYKKVQQRKSKETDRGCLKSVIMLIVLFFLIIFGIVACSTNVNFFFQ
>CP031670.1|AXP71045.1|1205531_1205882_+|Complement-inhibitor-precursor
MKFKKYILTGTLALLLSSTGIATIEGNKADASSLDKYLTESQFHDKRIAEELRTLLNKSNVYALAAGSLNPYYKRTIMMNEYRAKAALKKNDFVSMADAKVALEKIYKEIDEIINR
>CP031670.1|AXP71044.1|1204880_1205378_+|Fibrinogen-binding-protein-precursor
MKNKLIAKSLLTLAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVK
>CP031670.1|AXP71043.1|1204115_1204622_+|hypothetical-protein
MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFITIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAVNEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
>CP031670.1|AXP71042.1|1203042_1203444_-|FPRL1-inhibitory-protein-precursor
MKKNITKTIIASTVIAAGLLTQTNDAKAFFSYEWKGLEIAKNLADQAKKDDERIDKLMKESDKNLTPYKAETVNDLYLIVKKLSQGDVKKAVVRIKDGGPRDCYTFDLTRPLEENRKNIKVVKNGEIDSITWY
>CP031670.1|AXP71041.1|1202344_1202674_+|Fibrinogen-binding-protein-precursor
MKKNFIGKSILSIAAISLTVSTFAGESHAQTKNVEAAKKYDQYQTNFKKQVNKKVVDAQKAVNFFKRTRTVATHRKAQRAVNLIHFQHSYEKKKLQRQIDLVLKYNTLK
>CP031670.1|AXP71051.1|1210567_1211284_-|superantigen-like-protein
MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHFSFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQLWWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAREALIKNKILYNENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD
>CP031670.1|AXP71052.1|1211391_1212117_-|Exotoxin-type-H-precursor
MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYLTFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDSFALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIRQTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKSN
>CP031670.1|AXP71053.1|1212211_1212937_-|superantigen-like-protein
MKKNIMNKLVLSTALLLLETTSTQLPKTPISFSSETKAYNISENETNINELIKYYTQPHFSLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPRNAEIEVILEKSN
>CP031670.1|AXP71054.1|1213374_1214376_+|Ornithine-carbamoyltransferase
MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEIMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF
>CP031670.1|AXP71055.1|1214395_1215331_+|Carbamate-kinase-1
MMAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKNDTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAALEGKVGTVIKK
>CP031670.1|AXP71056.1|1215502_1217059_+|hypothetical-protein
MENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVNPHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMVEGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGTLCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGTTFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSAHFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS
>CP031670.1|AXP71057.1|1217366_1217594_+|hypothetical-protein
MTHLTKVLDTLTGICVVLLFSKYFVAYANMVFDWNLRWYLLENIPHLPIILFILMFIFGVPSEMIKDRQRKNNGV
>CP031670.1|AXP71058.1|1217898_1218846_-|C4-dicarboxylate-transporter/malic-acid-transport-protein
MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQLNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKYLKDFSLENVYPSWTVLFIGIAIAGLTAPVSGYFFIGQLTVIYGFVATCIVLPIVFKRLKAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLLLAQIFYFYIIIQLPKLLKEPFSPLFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFFLKKEKQDKFLRNASQ
>CP031670.1|AXP71059.1|1219094_1219283_+|hypothetical-protein
MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKNERSLDNMSLKNAELLYKFANSIFSNEN
>CP031670.1|AXP71060.1|1220194_1220329_+|Antibacterial-protein-3
MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF

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Crispr_ID: CP031670_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031670_9

1910585-1910811

Orphan

Consensus_repeat	Method
GGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTCAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031670_9

>merge|CP031670|9|1910585-1910811|CRISPRCasFinder
GGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTCAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTCAATAATGTGCAAGTTGG

>CP031670|9|8|1910585-1910811|CRISPRCasFinder
GGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAATGTGCAAGTTGG	GGTAAGGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTCAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCG
GGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTCAATAATGTGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP031670.1\|AXP71691.1\|1914389_1915658_+\|tricarballylate-dehydrogenase	unknown	unknown	gnl\|CDD\|367519
CP031670.1\|AXP71696.1\|1927938_1928502_+\|16S-rRNA-m(4)C1402-methyltransferase	unknown	unknown	gnl\|CDD\|377744
CP031670.1\|AXP71687.1\|1908861_1910271_-\|Putative-dipeptidase	unknown	unknown	gnl\|CDD\|235988
CP031670.1\|AXP71680.1\|1902722_1903034_-\|Thioredoxin-like-protein-YtpP	unknown	unknown	gnl\|CDD\|239245
CP031670.1\|AXP71690.1\|1912321_1913983_-\|putative-cell-division-protein-YtgP	unknown	unknown	gnl\|CDD\|240529
CP031670.1\|AXP71697.1\|1928621_1929023_-\|HTH-type-transcriptional-regulator-rot	unknown	unknown	gnl\|CDD\|130944
CP031670.1\|AXP71686.1\|1908009_1908858_-\|D-alanine-aminotransferase	unknown	unknown	gnl\|CDD\|130191
CP031670.1\|AXP71692.1\|1922659_1922971_-\|molybdopterin-biosynthesis-like-protein-MoeZ	unknown	unknown	gnl\|CDD\|238089
CP031670.1\|AXP71683.1\|1904697_1905540_-\|putative-quorum-quenching-lactonase-YtnP	unknown	unknown	gnl\|CDD\|293814
CP031670.1\|AXP71693.1\|1922992_1925410_-\|Leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
CP031670.1\|AXP71684.1\|1906009_1906654_-\|tRNA-(guanine-N(7)-)-methyltransferase	unknown	unknown	gnl\|CDD\|234649
CP031670.1\|AXP71695.1\|1926988_1927942_+\|coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|224163
CP031670.1\|AXP71689.1\|1911629_1912325_-\|Ribosomal-small-subunit-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|224108
CP031670.1\|AXP71679.1\|1901765_1902623_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237463
CP031670.1\|AXP71682.1\|1904258_1904573_+\|Peptidase-propeptide-and-YPEB-domain-protein	unknown	unknown	gnl\|CDD\|227871
CP031670.1\|AXP71685.1\|1906668_1907460_-\|Phosphotransferase-enzyme-family-protein	unknown	unknown	gnl\|CDD\|223584
CP031670.1\|AXP71678.1\|1901140_1901737_-\|Phenylalanine--tRNA-ligase-beta-subunit	unknown	unknown	gnl\|CDD\|234804
CP031670.1\|AXP71688.1\|1911190_1911613_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378938
CP031670.1\|AXP71681.1\|1903098_1904175_-\|Glutamyl-aminopeptidase	unknown	unknown	gnl\|CDD\|349906
CP031670.1\|AXP71694.1\|1925697_1926879_-\|Multidrug-resistance-protein-MdtH	unknown	unknown	gnl\|CDD\|340887

Protein	Function_ID	Function_description	E-value
CP031670.1\|AXP71691.1\|1914389_1915658_+\|tricarballylate-dehydrogenase	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	0
CP031670.1\|AXP71696.1\|1927938_1928502_+\|16S-rRNA-m(4)C1402-methyltransferase	gnl\|CDD\|377744	pfam06962, rRNA_methylase, Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.	2.38341e-67
CP031670.1\|AXP71687.1\|1908861_1910271_-\|Putative-dipeptidase	gnl\|CDD\|235988	PRK07318, PRK07318, dipeptidase PepV; Reviewed.	0
CP031670.1\|AXP71680.1\|1902722_1903034_-\|Thioredoxin-like-protein-YtpP	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.34221e-24
CP031670.1\|AXP71690.1\|1912321_1913983_-\|putative-cell-division-protein-YtgP	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.63186e-123
CP031670.1\|AXP71697.1\|1928621_1929023_-\|HTH-type-transcriptional-regulator-rot	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	3.30794e-17
CP031670.1\|AXP71686.1\|1908009_1908858_-\|D-alanine-aminotransferase	gnl\|CDD\|130191	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase. This enzyme is a homodimer. The pyridoxal phosphate attachment site is the Lys at position 146 of the seed alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached. [Energy metabolism, Amino acids and amines].	6.28892e-159
CP031670.1\|AXP71692.1\|1922659_1922971_-\|molybdopterin-biosynthesis-like-protein-MoeZ	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.46882e-25
CP031670.1\|AXP71683.1\|1904697_1905540_-\|putative-quorum-quenching-lactonase-YtnP	gnl\|CDD\|293814	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain. Bacillus subtilis YtnP inhibits the signaling pathway required for the streptomycin production and development of aerial mycelium in Streptomyces griseus. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.38932e-155
CP031670.1\|AXP71693.1\|1922992_1925410_-\|Leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
CP031670.1\|AXP71684.1\|1906009_1906654_-\|tRNA-(guanine-N(7)-)-methyltransferase	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.9831e-87
CP031670.1\|AXP71695.1\|1926988_1927942_+\|coproporphyrinogen-III-oxidase	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	0
CP031670.1\|AXP71689.1\|1911629_1912325_-\|Ribosomal-small-subunit-pseudouridine-synthase-A	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	2.63099e-93
CP031670.1\|AXP71679.1\|1901765_1902623_-\|hypothetical-protein	gnl\|CDD\|237463	PRK13668, PRK13668, hypothetical protein; Provisional.	2.02352e-168
CP031670.1\|AXP71682.1\|1904258_1904573_+\|Peptidase-propeptide-and-YPEB-domain-protein	gnl\|CDD\|227871	COG5584, COG5584, Predicted small secreted protein [Function unknown].	4.19522e-46
CP031670.1\|AXP71685.1\|1906668_1907460_-\|Phosphotransferase-enzyme-family-protein	gnl\|CDD\|223584	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism].	5.2385e-83
CP031670.1\|AXP71678.1\|1901140_1901737_-\|Phenylalanine--tRNA-ligase-beta-subunit	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	7.47641e-48
CP031670.1\|AXP71688.1\|1911190_1911613_-\|hypothetical-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	0.000542053
CP031670.1\|AXP71681.1\|1903098_1904175_-\|Glutamyl-aminopeptidase	gnl\|CDD\|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	2.36515e-152
CP031670.1\|AXP71694.1\|1925697_1926879_-\|Multidrug-resistance-protein-MdtH	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.66072e-94

>CP031670.1|AXP71687.1|1908861_1910271_-|Putative-dipeptidase
MWKEKVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVDHIAGRIEAGKGNDVLGILCHVDVVPAGDGWDSNPFEPVVTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWKCTDRYFKTEEMPTLGFAPDAEFPCIHGEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQDFEYFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMGMKFHTDVMGDVTTNIGVITYDNENAGLFGINLRYPEGFEFEKAMDRFANEIQQYGFEVKLGKVQPPHYVDKNDPFVQKLVTAYRNQTNDMTEPYTIGGGTYARNLDKGVAFGAMFSDSEDLMHQKNEYITKKQLFNATSIYLEAIYSLCVEE
>CP031670.1|AXP71686.1|1908009_1908858_-|D-alanine-aminotransferase
MEKIFLNGEFVSPSEAKVSYNDRGYVFGDGIYEYIRVYNGKLFTVTEHYERFLRSANEIGLDLNYSVEELIELSRKLVDMNQIETGAIYIQATRGVAERNHSFPTPEVEPAIVAYTKSYDRPYDHLENGVNGVTVEDIRWLRCDIKSLNLLGNVLAKEYAVKYNAVEAIQHRGETVTEGSSSNAYAIKDGVIYTHPINNYILNGITRIVIKKIAEDYNIPFKEETFTVDFLKNADEVIVSSTSAEVTPVIKLDGEPVNDGKVGPITRQLQEGFEKYIESHSI
>CP031670.1|AXP71685.1|1906668_1907460_-|Phosphotransferase-enzyme-family-protein
MEQFYQLGWTLDSAGGASGEAYMAEQDGQKLFLKRNSNPFIAALSAEGIVPKLVWTKRIETGEVVTAQHWKNGRELSSNEMKQTRVAHLLKKIHNSRPLLSMLKRMEMEPITPEIMLNKINASLSREVLTHHIVRKSLTYLEEHIPSLDSRFFTVVHGDVNHNNWLLSDRDELFLVDWEGAMIADPAIDIGMLLYNYVPQQQWSEWLETYGVQESLNLNKRMKWYTVIQSIGLVQWYEEQKRYKDMNTWLKFLNEVMNSNMFI
>CP031670.1|AXP71684.1|1906009_1906654_-|tRNA-(guanine-N(7)-)-methyltransferase
MRVRYKPWAEDYLKDHPELVDMDGQHAGKMTEWFDKTQPIHIEIGSGMGQFITTLAAQNPHINYISMEREKSIVYKVLDKVKEMGLTNLKIICNDAIELNEYFKDGEVSRIYLNFSDPWPKNRHAKRRLTYHTFLALYQQILNDEGDLHFKTDNRGLFAYSLESMSQFGMYFTKINLNLHQEDDGSNILTEYEKKFSDKGSRIYRMEAKFHSQK
>CP031670.1|AXP71683.1|1904697_1905540_-|putative-quorum-quenching-lactonase-YtnP
MKIGDISIHYLNGGNTKMDGGAMFGVVPKPLWSKQYNANERNQINLPTHPILIQTAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMTHMHFDHAAGLTDQAGHAIFENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNKLILFEKHFEPVLGIKMQHSGGHSFGHTIITIESQGDKAVHMGDIFPTTAHKNPLWVTAYDDYPMQSIREKERMIPYFIQQQYWFLFYHDENYFAVKYSDNGENIDAYILRETLVDNN
>CP031670.1|AXP71682.1|1904258_1904573_+|Peptidase-propeptide-and-YPEB-domain-protein
MMTKLKYIIPTIIAVAIVIISTISIIQFINRKRYNPVKVLNEVKSYFMNVKGSYIVYEPFVHPETDKYRLVYQGGITTIKNGQNIHYDFYADAYTGEVINIVER
>CP031670.1|AXP71681.1|1903098_1904175_-|Glutamyl-aminopeptidase
MNINKKVTLQRIQTLTELHGAPGFEEEVKNYMTQQMAPYVDEFIENRMGGFFGVKKSKNPNAKRVMIAAHMDEIGFMITNITKNGMIQFTNLGGVANDIWQGQRLVIKNRNGDKIIGVVSNIPKHFRTGSEGAPEIKDLTLDIGAQNEDEVRERGIDIGDTIVPHTPFTQLSEHRYSAKAWDNRYGCVLAIEILELLKDIELDVDLYVGANVQEEVGLRGAKASAEMIDPDVAFVVDCSPANDVKGNQPLSGELGKGTLIRIKDGTMILKPVFRDYLLKLVEAHDIEHQYYMSPGGTDGGEIHKANIGIPTAVIGVCARYIHSTDSVFDIRDYFAARSLLSEAICNLDNNQIETLQYK
>CP031670.1|AXP71680.1|1902722_1903034_-|Thioredoxin-like-protein-YtpP
MKQLESEQQFESLKQGATVFEFTAGWCPDCRVIEPDLPELEARYPMFDFVSVDRDKFMDICIENGIMGIPSFLVYKNGELLGSYIGKERKSIEQIDAFLAQYV
>CP031670.1|AXP71679.1|1901765_1902623_-|hypothetical-protein
MNTFQMRDKLKERLSHLDVDFKFNREEETLRIYRTDNNKGITIKLNAIVAKYEDKKEKIVDEIVYYVDEAIAQMADKTLESISSSQIMPVIRATSFDKKTKQGVPFIYDEHTAETAVYYAVDLGKSYRLIDESMLEDLKLTEQQIREMSLFNVRKLSNSYTTDEVKGNIFYFINSNDGYDASRILNTAFLNEIEAQCQGEMLVAVPHQDVLIIADIRNKTGYDVMAHLTMEFFTKGLVPITSLSFGYKQGHLEPIFILGKNNKQKRDPNVIQRLEANRRKFNKDK
>CP031670.1|AXP71678.1|1901140_1901737_-|Phenylalanine--tRNA-ligase-beta-subunit
MNLFYNPKYVGDVAFLQIEPVEGELNYNKKGNVVEITNEGNVVGYNIFEISKDITIEEKGHIKLTDELVNVFQKRISEAGFDYKLNADLSPKFVVGYVETKDKHPDADKLSVLNVNVGNDTLQIVCGAPNVEAGQKVVVAKVGAVMPSGMVIKDAELRGVASSGMICSMKELNLPNAPEEKGIMVLNDSYEIGQAFFE
>CP031670.1|AXP71688.1|1911190_1911613_-|hypothetical-protein
MAKGNLFKAILGIGGAVAAVLVTRKDSRDKLKAEYNKYKQDPQSYKDNAKDKATQLGTIANETIKEVKTNPKEYANRLKNNPKAFFKEEKSKFTEYDNKTDESIEKGKFDDEGGAAPNNNLRIVTEEDLKKNKNALSDKE
>CP031670.1|AXP71689.1|1911629_1912325_-|Ribosomal-small-subunit-pseudouridine-synthase-A
MRIDKILANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIENVYIMLNKPKGYISATEDHHSKTVIDLIPEYEHLNIFPVGRLDKDTEGLLLITNDGDFNHELMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLTDGKVKPAILTYIDNQTSHVTIYEGKYHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDFDKLNYK
>CP031670.1|AXP71690.1|1912321_1913983_-|putative-cell-division-protein-YtgP
MSESKEMVRGTFLITISILITKVLGVLFIIPFNYLIGGQENMAPFTYAYAPYNIAIAVATAGVPLAASKYVAKYNAIGAYKVSQKFYKSSFIVMSITGVLGFLVLYFLAPYISELTLARNIHDKNGWSVDDITWIIRIISMVVIFIPVLATWRGIFQGYKSMGPTAVSEVTEQIARVIFILIGSYLVLNVFDGSILLANGIATFAAAVGAIIGIFTLWYYWRKRKHNIDRMVESDYTDIDVSYGKMYKEIIAYSIPFVIVSLNYPLFNLVDQFTHNGALSLVGIPSQLQDIFFNMLNMSTNKIVMIPTSLSAGFAVSLIPYITKTFAEGRLHEMHHQIRTSIGVLMFITVPASIGIMALAQPLFTVFYGYDPIVLGHDPNHDGSRLLFYYAPVAILISLLSVTASMLQGIDKQKLTVYVILASVVIKLALNYPLIMLFHTPGAILSTSIALLFAIGCNFYILKKYAKFKFSYSWIHFAKIFLYSFIMMLGVELVFFLANLFLEPTKLGYLIIIILGVTVGILIYGTITIKTRLADEFLGEIPEKLRRRVRFLR
>CP031670.1|AXP71691.1|1914389_1915658_+|tricarballylate-dehydrogenase
MYQTIIIGGGPSGLMAAVAASEQSSSVLLIEKKKGLGRKLKISGGGRCNVTNRLPYAEIIKNIPGNGKFLYSPFSIFDNESIIDFFESRGVKLKEEDHGRMFPVSNKAQDVVDTLVTTIERQHVTIKEEEAVSRIEVNTDQTFTVHTQNNSYESHSLVIATGGTSVPQTGSTGDGYKFAQDLGHTITELFPTEVPITSAEPFIKSNRLKGLSLKDVELSVLKKNGKKRISHQMDMLFTHFGISGPAALRCSQFVYKEQKNQKTQHISMAIDAFPELNHEQLKQHITSLLSDTPDKIIKNSLHGLIEERYLLFMLEQAGIDENTTSHHLSNQQLNDLVNMFKGFVFKVNGTLPIDKAFVTGGGVSLKEIQPKTMMSKLVPGLFLCGEVLDIHGYTGGYNITSALVTGHVAGLYAGHYSHASME
>CP031670.1|AXP71692.1|1922659_1922971_-|molybdopterin-biosynthesis-like-protein-MoeZ
MKSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPDNLNSFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHAWGDEGLEIKSI
>CP031670.1|AXP71693.1|1922992_1925410_-|Leucine--tRNA-ligase
MLNYNHNQIEKKWQDYWDENKTFKTNDNLGQKKFYALDMFPYPSGAGLHVGHPEGYTATDIISRYKRMQGYNVLHPMGWDAFGLPAEQYALDTGNDPREFTKKNIQTFKRQIKELGFSYDWDREVNTTDPEYYKWTQWIFIQLYNKGLAYVDEVAVNWCPALGTVLSNEEVIDGVSERGGHPVYRKPMKQWVLKITEYADQLLADLDDLDWPESLKDMQRNWIGRSEGAKVSFDVDNTEGKVEVFTTRPDTIYGASFLVLSPEHALVNSITTDEYKEKVKAYQTEASKKSDLERTDLAKDKSGVFTGAYATNPLSGEKVQIWIADYVLSTYGTGAIMAVPAHDDRDYEFAKKFDLPIIEVIEGGNVEEAAYTGEGKHINSGELDGLENEAAITKAIQLLEQKGAGEKKVNYKLRDWLFSRQRYWGELIPVIHWEDGTMTTVPEEELPLLLPETDEIKPSGTGESPLANIDSFVNVVDEKTGMKGRRETNTMPQWAGSCWYYLRYIDPKNENMLADPEKLKHWLPVDLYIGGVEHAVLHLLYARFWHKVLYDLAIVPTKEPFQKLFNQGMILGEGNEKMSKSKGNVINPDDIVQSHGADTLRLYEMFMGPLDAAIAWSEKGLDGSRRFLDRVWRLMVNEDGTLSSKIVTTNNKSLDKVYNQTVKKVTEDFETLGFNTAISQLMVFINECYKVDEVYKPYIEGFVKMLAPIAPHIGEELWSKLGHEESITYQPWPTYDEALLVDDEVEIVVQVNGKLRAKIKIAKDTSKEEMQEIALSNDNVKASIEGKDIMKVIAVPQKLVNIVAK
>CP031670.1|AXP71694.1|1925697_1926879_-|Multidrug-resistance-protein-MdtH
MNIPKSVWWLVIGMALNITGSSFLWPLNTIYMKQELGKSLTVAGLVLMINSFGMVIGNLLGGSLFDKLGGYKTILIGTFTCLCSTTLLNFFHGWPWYAVWLVMLGFGGGMIIPAIYAMAGAVWPNGGRQTFNAIYLAQNIGVAVGAAMGGFVAEFSFNYIFLANLIMYVVFALVAVTQFNIEINAKVKYPTHLDITGKKNKARFISLVLICAMFAICWVAYIQWESTIASFTQSINISMAQYSVLWTINGIMILVAQPLIKPILYLLKGNLKKQMFVGIIIFMLSFFVTSFAENFTIFVVGMIILTFGEMFVWPAVPTIANQLAPDGKQGQYQGFVNSAATVGKAFGPFLGGVLVDAFNMRMMFIGMMLLLVFALILLMVFKENNTQPKKIDA
>CP031670.1|AXP71695.1|1926988_1927942_+|coproporphyrinogen-III-oxidase
MGNHFQYAFENKRYHTWNYHLKNKFGQKIFKVALDGGFDCPNRDGTVAHGGCTFCSAAGSGDFAGNRADSIAVQFKEIKEKMHEKWHEGKYIAYFQAFTNTHAPVEVLKEKFEPVLKEPGVVGLSIGTRPDCLPDDVVEYLADLNQRTYLWVELGLQTIHQSTSDLINRAHDMKTYYDGVAKLRKHNINVCTHIINGLPGEDYDMMMATAKEVAQMDVQGIKIHLLHLLKGTPMVKQYDKGLLTFMTQEEYTNLVVDQLEVIPPEMIVHRITGDGPIDIMVGPMWSVNKWEVLNGIDAELARRNSYQGLRYKSKVKQ
>CP031670.1|AXP71696.1|1927938_1928502_+|16S-rRNA-m(4)C1402-methyltransferase
MKLERILPFSKTLIKQHITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGHENIEHHINDAHKGHIDAAIFNLGYLPKGDKSIVTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHSEGQIEKHALLDYLSTLDQKHAQVLQYQFLNQRNHAPFICAIEKIS
>CP031670.1|AXP71697.1|1928621_1929023_-|HTH-type-transcriptional-regulator-rot
MKKVNNDTVFGILQLETLLGDINSIFSEIESEYKMSREEILILLTLWQKGSMTLKEMDRFVEVKPYKRTRTYNNLVELEWIYKERPVDDERTVIIHFNEKLQQEKVELLNFISDAIASRATAMQNSLNAIIAV

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Crispr_ID: CP031670_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031670_10

2266394-2266544

Orphan

Consensus_repeat	Method
AACTTTAGTTGTTAGGGGCTCTTATGCA	CRISPRCasFinder

2 spacers

csa3

The CRISPR arrays of CP031670_10

>merge|CP031670|10|2266394-2266544|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTAAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTTCTTTCTA

>CP031670|10|9|2266394-2266544|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCA	TGCGCTTAGCGCAGGCGCTCCTACTTTTA
AACTTTAGTTGTTAGGGGCTCTTATGCA	GTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTC
AACTTTAGTTGTTAGGGGCTTCTTTCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP031670.1\|AXP71996.1\|2261265_2261496_-\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP71997.1\|2261526_2262465_-\|putative-mannose-6-phosphate-isomerase-GmuF	unknown	unknown	gnl\|CDD\|224399
CP031670.1\|AXP72009.1\|2278030_2278465_+\|Mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014
CP031670.1\|AXP71999.1\|2263716_2264037_+\|HTH-type-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP031670.1\|AXP72002.1\|2267404_2267608_-\|DNA-invertase-hin	unknown	unknown	gnl\|CDD\|239737
CP031670.1\|AXP71998.1\|2262899_2263565_-\|putative-sugar-epimerase-YhfK	unknown	unknown	gnl\|CDD\|187554
CP031670.1\|AXP72010.1\|2278464_2279571_+\|Mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
CP031670.1\|AXP72007.1\|2274313_2275852_+\|PTS-system-mannitol-specific-EIICB-component	unknown	unknown	gnl\|CDD\|225123
CP031670.1\|AXP71995.1\|2259220_2260594_-\|EVE-domain-protein	unknown	unknown	gnl\|CDD\|376640
CP031670.1\|AXP72004.1\|2269888_2270746_-\|Putative-phosphatase-YwpJ	unknown	unknown	gnl\|CDD\|223635
CP031670.1\|AXP72011.1\|2279889_2287326_-\|Extracellular-matrix-binding-protein-ebh-precursor	unknown	unknown	gnl\|CDD\|275089
CP031670.1\|AXP71992.1\|2256875_2257586_+\|Purine-nucleoside-phosphorylase-DeoD-type-1	unknown	unknown	gnl\|CDD\|180275
CP031670.1\|AXP72006.1\|2271827_2273633_-\|Glutamine--fructose-6-phosphate-aminotransferase-[isomerizing]	unknown	unknown	gnl\|CDD\|234729
CP031670.1\|AXP72005.1\|2270813_2271596_-\|putative-ABC-transporter-ATP-binding-protein-YlmA	unknown	unknown	gnl\|CDD\|224044
CP031670.1\|AXP72001.1\|2265284_2266376_+\|hypothetical-protein	unknown	unknown	unknown
CP031670.1\|AXP72003.1\|2267666_2268803_-\|SAP-domain-protein	unknown	unknown	gnl\|CDD\|366887
CP031670.1\|AXP72000.1\|2264038_2265019_+\|Cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	unknown	unknown	gnl\|CDD\|224151
CP031670.1\|AXP72008.1\|2275886_2278019_+\|Transcriptional-regulator-MtlR	unknown	unknown	gnl\|CDD\|226234
CP031670.1\|AXP71994.1\|2258349_2258763_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225556
CP031670.1\|AXP71993.1\|2257706_2258150_-\|General-stress-protein-20U	unknown	unknown	gnl\|CDD\|223854

Protein	Function_ID	Function_description	E-value
CP031670.1\|AXP71997.1\|2261526_2262465_-\|putative-mannose-6-phosphate-isomerase-GmuF	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
CP031670.1\|AXP72009.1\|2278030_2278465_+\|Mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
CP031670.1\|AXP71999.1\|2263716_2264037_+\|HTH-type-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
CP031670.1\|AXP72002.1\|2267404_2267608_-\|DNA-invertase-hin	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	1.78732e-14
CP031670.1\|AXP71998.1\|2262899_2263565_-\|putative-sugar-epimerase-YhfK	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.74381e-48
CP031670.1\|AXP72010.1\|2278464_2279571_+\|Mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
CP031670.1\|AXP71995.1\|2259220_2260594_-\|EVE-domain-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
CP031670.1\|AXP72004.1\|2269888_2270746_-\|Putative-phosphatase-YwpJ	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	5.39747e-59
CP031670.1\|AXP72011.1\|2279889_2287326_-\|Extracellular-matrix-binding-protein-ebh-precursor	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	5.55569e-109
CP031670.1\|AXP71992.1\|2256875_2257586_+\|Purine-nucleoside-phosphorylase-DeoD-type-1	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP031670.1\|AXP72007.1\|2274313_2275852_+\|PTS-system-mannitol-specific-EIICB-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP031670.1\|AXP72005.1\|2270813_2271596_-\|putative-ABC-transporter-ATP-binding-protein-YlmA	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	9.86955e-104
CP031670.1\|AXP72006.1\|2271827_2273633_-\|Glutamine--fructose-6-phosphate-aminotransferase-[isomerizing]	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP031670.1\|AXP72003.1\|2267666_2268803_-\|SAP-domain-protein	gnl\|CDD\|366887	pfam02037, SAP, SAP domain. The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.	3.8303e-06
CP031670.1\|AXP72000.1\|2264038_2265019_+\|Cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.049e-108
CP031670.1\|AXP72008.1\|2275886_2278019_+\|Transcriptional-regulator-MtlR	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.09729e-67
CP031670.1\|AXP71994.1\|2258349_2258763_-\|hypothetical-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
CP031670.1\|AXP71993.1\|2257706_2258150_-\|General-stress-protein-20U	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67

>CP031670.1|AXP72001.1|2265284_2266376_+|hypothetical-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP031670.1|AXP72000.1|2264038_2265019_+|Cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>CP031670.1|AXP71999.1|2263716_2264037_+|HTH-type-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP031670.1|AXP71998.1|2262899_2263565_-|putative-sugar-epimerase-YhfK
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGDQDIKDALTQFENETD
>CP031670.1|AXP71997.1|2261526_2262465_-|putative-mannose-6-phosphate-isomerase-GmuF
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP031670.1|AXP71996.1|2261265_2261496_-|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP031670.1|AXP71995.1|2259220_2260594_-|EVE-domain-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRISNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP031670.1|AXP71994.1|2258349_2258763_-|hypothetical-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP031670.1|AXP71993.1|2257706_2258150_-|General-stress-protein-20U
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP031670.1|AXP71992.1|2256875_2257586_+|Purine-nucleoside-phosphorylase-DeoD-type-1
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>CP031670.1|AXP72002.1|2267404_2267608_-|DNA-invertase-hin
MIVYQRKINIDTLKEFGCGCVYSERISGVKRTELVKCLDYLRESDTLVVYQLDRLGRTTKLLIELSQ
>CP031670.1|AXP72003.1|2267666_2268803_-|SAP-domain-protein
MSVNARDLLVLHTNVNRLVGEEIFANKCLANNDVQIMNSIKKLIEAELLTTTNDFEVSIYKKTRPELQSILKSFGIKTTGNKPDLIKRIDDNFHIINNLDLPYVYIPIKKGEEILKKTEYLTSFIQSYGEISLERAYYLVENYIDENCDDKVAEIYKFEFQRKYDNGEFDFNHGYNFELNMLIDHYKRDVKDYDNARKYSNIYLYFGLRDFLKKLMSNYSYYDSKGNIDLNEIQNDLNRFINSSASGMYERLIYNENLSNNIMFELFKKDTQDYSDLEEQLIEKFINYVVSNVKKESRSNTLIELSKILENGYTIDKEEFKKEDDYLSKYIFTDIDYLKKLESKINVAIDIRSGEIHLVLDDDSLDILIQNQKYGNEF
>CP031670.1|AXP72004.1|2269888_2270746_-|Putative-phosphatase-YwpJ
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAEHFLAE
>CP031670.1|AXP72005.1|2270813_2271596_-|putative-ABC-transporter-ATP-binding-protein-YlmA
MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>CP031670.1|AXP72006.1|2271827_2273633_-|Glutamine--fructose-6-phosphate-aminotransferase-[isomerizing]
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP031670.1|AXP72007.1|2274313_2275852_+|PTS-system-mannitol-specific-EIICB-component
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP031670.1|AXP72008.1|2275886_2278019_+|Transcriptional-regulator-MtlR
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGTDSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFISDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP031670.1|AXP72009.1|2278030_2278465_+|Mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>CP031670.1|AXP72010.1|2278464_2279571_+|Mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVEDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>CP031670.1|AXP72011.1|2279889_2287326_-|Extracellular-matrix-binding-protein-ebh-precursor
MNLFRQQKFSIRKFNVGIFSALIATVTFISTNPTTASAAEQNQPAQNQPAQPADANTQPNANAGAQANPTAQPAAPANQGQPAVQPANQGGQANPAGGAAQPNTQPAGQGDQADPNNAAQAQPGNQATPANQAGQGNNQATPNNNATPANQTQPANAPAAAQPAAPVAANAQTQDPNASNTGEGSINTTLTFDDPAISTDENRQDPTVTVTDKVNGYSLINNGKIGFVNSELRRSDMFDKNNPQNYQAKGNVAALGRVNANDSTDHGNFNGISKTVNVKPDSELIINFTTMQTNSKQGATNLVIKDAKKNTELATVNVAKTGTAHLFKVPTDADRLDLQFIPDNTAVADASRITTNKDGYKYYSFIDNVGLFSGSHLYVKNRDLAPKATNNKEYTINTEIGNNGNFGASLKADQFKYEVTLPQGVTYVNNSLTTTFPNGNEDSTVLKNMTVNYDQNANKVTFTSQGVTTARGTHTKEVLFPDKSLKLSYKVNVANIDTPKNIDFNEKLTYRTASDVVINNAQPEVTLTADPFSVAVEMNKDALQQQVNSQVDNSHYTTASIAEYNKLKQQADTILNEDANHVKTANRASQADIDGLVTKLQAALIDNQAAIAELDTKAQEKVTAAQQSKKVTQDEVAALVTKINNDKNNAIAEINKQTTAQGVTTEKDNGIAVLEQDVITPTVKPQAKQDIIQAVTTRKQQIKKSNASLQDEKDVANDKIGKIETKAIKDIDAATTNAQVEAIKTKAINDINQTTPATTAKAAALEEFDEVVQAQIDQAPLNPDTTNEEVAEAIERINAAKVSGVKAIEATTTAQDLERVKNEEISKIENITDSTQTKMDAYNEVKQAATARKAQNATVSNATNEEVAEADAAVDAAQKQGLHDIQVVKSKQEVADTKSKVLDKINAIQTQAKVKPAADTEVENAYNTRKQEIQNSNASTTEEKQAAYTELDTKKQEARTNLDAANTNSDVTTAKDNSIAAINQVQAATTKKSDAKAEIAQKASERKTAIEAMNDSTTEEQQAAKDKVDQAVVTANADIDNAAANNDVDNAKTTNEATIAAITPDANVKPAAKQAIADKVQAQETAIDGNNGSTTEEKAAAKQQVQTEKTTADAAIDAAHTNAEVEAAKKAAIAKIEAIQPATTTKDNAKEAIATKANERKTAIAQTQDITAEEIAAANADVDNAVTQANSNIEAANSQNDVDQAKTTGENSIDQVTPTVNKKATARNEITAILNNKLQEIQATPDATDEEKQAADAEANTENGKANQAISAATTNAQVDEAKANAEAAINAVTPKVVKKQAAKDEIDQLQATQTNVINNDQNATTEEKEAAIQQLATAVTDAKNNITAATDDNGVDQAKDAGKNSIQSTQPATAVKSNAKNDVDQAVTTQNQAIDNTTGATTEEKNAAKDLVLKAKEKAYQDILNAQTTNDVTQIKDQAVADIQGITADTTIKDVAKDELATKANEQKALIAQTADATTEEKEQANQQVDAQLTQGNQNIENAQSIDDVNTAKDNAIQAIDPIQASTDVKTNARAELLTEMQNKITEILNNNETTNEEKGNDIGPVRAAYEEGLNNINAATTTGDVTTAKDTAVQKVQQLHANPVKKPAGKKELDQAAADKKTQIEQTPNASQQEINDAKQEVDTELNQAKTNVDQSSTNEYVDNAVKEGKAKINAVKTFSEYKKDALAKIEDAYNAKVNEADNSNASTSSEIAEAKQKLAELKQTADQNVNQATSKDDIEVQIHNDLDNINDYTIPTGKKESATTDLYAYADQKKNNISADTNATQDEKQQAIKQVDQNVQTALESINNGVDNGDVDDALTQGKEAIDAIQVDATVKPKANQAIEVKAEDTKESIDQSDQLTAEEKTEALAMIKQITDQAKQGITDATTTAEVEKAKAQGLEAFDNIQIDSTEKQKAIEELETALDQIEAGVNVNADATTEEKEAFTNALEDILSKATEDISDQTTNAEIATVKNSALEQLKAQRINPEVKKNALEAIREVVNKQIEIIKNADADASAKEIARTDLGRYFDRFADKLDKTQTNAEVAELQNVTIPAIEAIVPQNDPDANDTNNGIDNNDATANSNANATPENTGQPNVSETTANGKADASPTTPNNSDAATGETTATSATDDANDKPQANNNSSVDASTNSPTMDNDVTSKPEVESTNNGTTDKPVTETDNATPAESTTNNNSTTTATNENAPTGSTATAPTTASTEAASSADSKDNASVNDSKQNAEVNNSAESQSTNDKVAQPKSENKAKAEKDGSDSTNQSMVESTTETLPSADITEPNVPSNTSKDKEESTTNQTDAGQLKSETNVASNEADKSPSKADTEVSNKPSTSASSEAKEKMTSTNVSQKDDTATADTNDTQKSVGSAANNKATQNDGANASPATVSNGSNSANQDMLNVTNTDDHQAKTKSAQQGKVNKAKQQAKTLPDTGMSHNDDLPYAELALGAGMAFLIRRFTKKDQQTEE

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP031670_5	5.1\|794577\|29\|CP031670\|CRISPRCasFinder	794577-794605	29	CP031670.1	2832891-2832919	0	1.0
CP031670_6	6.1\|843105\|34\|CP031670\|CRISPRCasFinder	843105-843138	34	CP031670.1	1418471-1418504	0	1.0
CP031670_6	6.1\|843105\|34\|CP031670\|CRISPRCasFinder	843105-843138	34	CP031670.1	1506856-1506889	0	1.0
CP031670_8	8.2\|1210242\|37\|CP031670\|CRT	1210242-1210278	37	CP031670.1	1066150-1066186	0	1.0
CP031670_8	8.2\|1210242\|37\|CP031670\|CRT	1210242-1210278	37	CP031670.1	1418430-1418466	0	1.0
CP031670_8	8.2\|1210242\|37\|CP031670\|CRT	1210242-1210278	37	CP031670.1	2066673-2066709	0	1.0
CP031670_8	8.3\|1210298\|37\|CP031670\|CRT	1210298-1210334	37	CP031670.1	135469-135505	0	1.0
CP031670_8	8.3\|1210298\|37\|CP031670\|CRT	1210298-1210334	37	CP031670.1	636662-636698	0	1.0
CP031670_8	8.3\|1210298\|37\|CP031670\|CRT	1210298-1210334	37	CP031670.1	752517-752553	0	1.0
CP031670_8	8.3\|1210298\|37\|CP031670\|CRT	1210298-1210334	37	CP031670.1	753487-753523	0	1.0
CP031670_8	8.3\|1210298\|37\|CP031670\|CRT	1210298-1210334	37	CP031670.1	800007-800043	0	1.0
CP031670_8	8.3\|1210298\|37\|CP031670\|CRT	1210298-1210334	37	CP031670.1	1418488-1418524	0	1.0
CP031670_8	8.3\|1210298\|37\|CP031670\|CRT	1210298-1210334	37	CP031670.1	1506836-1506872	0	1.0
CP031670_8	8.3\|1210298\|37\|CP031670\|CRT	1210298-1210334	37	CP031670.1	2068130-2068166	0	1.0
CP031670_8	8.3\|1210298\|37\|CP031670\|CRT	1210298-1210334	37	CP031670.1	2068189-2068225	0	1.0
CP031670_5	5.1\|794577\|29\|CP031670\|CRISPRCasFinder	794577-794605	29	CP031670.1	358845-358873	1	0.966
CP031670_5	5.1\|794577\|29\|CP031670\|CRISPRCasFinder	794577-794605	29	CP031670.1	358900-358928	1	0.966
CP031670_5	5.1\|794577\|29\|CP031670\|CRISPRCasFinder	794577-794605	29	CP031670.1	1910548-1910576	1	0.966
CP031670_8	8.1\|1210186\|37\|CP031670\|CRT	1210186-1210222	37	CP031670.1	1910545-1910581	1	0.973
CP031670_8	8.2\|1210242\|37\|CP031670\|CRT	1210242-1210278	37	CP031670.1	1506894-1506930	1	0.973
CP031670_8	8.2\|1210242\|37\|CP031670\|CRT	1210242-1210278	37	CP031670.1	2667485-2667521	1	0.973
CP031670_8	8.3\|1210298\|37\|CP031670\|CRT	1210298-1210334	37	CP031670.1	1092347-1092383	1	0.973
CP031670_8	8.3\|1210298\|37\|CP031670\|CRT	1210298-1210334	37	CP031670.1	2557027-2557063	1	0.973
CP031670_5	5.1\|794577\|29\|CP031670\|CRISPRCasFinder	794577-794605	29	CP031670.1	843147-843175	2	0.931
CP031670_5	5.1\|794577\|29\|CP031670\|CRISPRCasFinder	794577-794605	29	CP031670.1	955082-955110	2	0.931
CP031670_5	5.1\|794577\|29\|CP031670\|CRISPRCasFinder	794577-794605	29	CP031670.1	1731891-1731919	2	0.931
CP031670_5	5.1\|794577\|29\|CP031670\|CRISPRCasFinder	794577-794605	29	CP031670.1	2077484-2077512	2	0.931
CP031670_5	5.1\|794577\|29\|CP031670\|CRISPRCasFinder	794577-794605	29	CP031670.1	2582313-2582341	2	0.931
CP031670_8	8.1\|1210186\|37\|CP031670\|CRT	1210186-1210222	37	CP031670.1	843142-843178	2	0.946
CP031670_8	8.1\|1210186\|37\|CP031670\|CRT	1210186-1210222	37	CP031670.1	1731886-1731922	2	0.946
CP031670_8	8.1\|1210186\|37\|CP031670\|CRT	1210186-1210222	37	CP031670.1	2077479-2077515	2	0.946
CP031670_8	8.1\|1210186\|37\|CP031670\|CRT	1210186-1210222	37	CP031670.1	2582310-2582346	2	0.946
CP031670_8	8.1\|1210186\|37\|CP031670\|CRT	1210186-1210222	37	CP031670.1	2832886-2832922	2	0.946
CP031670_8	8.2\|1210242\|37\|CP031670\|CRT	1210242-1210278	37	CP031670.1	799951-799987	2	0.946
CP031670_8	8.2\|1210242\|37\|CP031670\|CRT	1210242-1210278	37	CP031670.1	1206274-1206310	2	0.946
CP031670_8	8.2\|1210242\|37\|CP031670\|CRT	1210242-1210278	37	CP031670.1	1210354-1210390	2	0.946
CP031670_8	8.2\|1210242\|37\|CP031670\|CRT	1210242-1210278	37	CP031670.1	2066614-2066650	2	0.946
CP031670_8	8.3\|1210298\|37\|CP031670\|CRT	1210298-1210334	37	CP031670.1	1206330-1206366	2	0.946

1. spacer 5.1|794577|29|CP031670|CRISPRCasFinder matches to position: 2832891-2832919, mismatch: 0, identity: 1.0

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtagaatttcttttcgaaa	Protospacer
*****************************

2. spacer 6.1|843105|34|CP031670|CRISPRCasFinder matches to position: 1418471-1418504, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 6.1|843105|34|CP031670|CRISPRCasFinder matches to position: 1506856-1506889, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

4. spacer 8.2|1210242|37|CP031670|CRT matches to position: 1066150-1066186, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

5. spacer 8.2|1210242|37|CP031670|CRT matches to position: 1418430-1418466, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

6. spacer 8.2|1210242|37|CP031670|CRT matches to position: 2066673-2066709, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

7. spacer 8.3|1210298|37|CP031670|CRT matches to position: 135469-135505, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

8. spacer 8.3|1210298|37|CP031670|CRT matches to position: 636662-636698, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

9. spacer 8.3|1210298|37|CP031670|CRT matches to position: 752517-752553, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

10. spacer 8.3|1210298|37|CP031670|CRT matches to position: 753487-753523, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

11. spacer 8.3|1210298|37|CP031670|CRT matches to position: 800007-800043, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

12. spacer 8.3|1210298|37|CP031670|CRT matches to position: 1418488-1418524, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

13. spacer 8.3|1210298|37|CP031670|CRT matches to position: 1506836-1506872, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

14. spacer 8.3|1210298|37|CP031670|CRT matches to position: 2068130-2068166, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

15. spacer 8.3|1210298|37|CP031670|CRT matches to position: 2068189-2068225, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

16. spacer 5.1|794577|29|CP031670|CRISPRCasFinder matches to position: 358845-358873, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcttgtagaatttcttttcgaaa	Protospacer
*******.*********************

17. spacer 5.1|794577|29|CP031670|CRISPRCasFinder matches to position: 358900-358928, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcttgtagaatttcttttcgaaa	Protospacer
*******.*********************

18. spacer 5.1|794577|29|CP031670|CRISPRCasFinder matches to position: 1910548-1910576, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

19. spacer 8.1|1210186|37|CP031670|CRT matches to position: 1910545-1910581, mismatch: 1, identity: 0.973

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacagacaatgcaagttg	Protospacer
*******.*****************************

20. spacer 8.2|1210242|37|CP031670|CRT matches to position: 1506894-1506930, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agatgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
** **********************************

21. spacer 8.2|1210242|37|CP031670|CRT matches to position: 2667485-2667521, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcgagtt	Protospacer
********************************.****

22. spacer 8.3|1210298|37|CP031670|CRT matches to position: 1092347-1092383, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgtaagtt	Protospacer
*******************************.*****

23. spacer 8.3|1210298|37|CP031670|CRT matches to position: 2557027-2557063, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctagagacaatgcaagtt	Protospacer
********************** **************

24. spacer 5.1|794577|29|CP031670|CRISPRCasFinder matches to position: 843147-843175, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

25. spacer 5.1|794577|29|CP031670|CRISPRCasFinder matches to position: 955082-955110, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

26. spacer 5.1|794577|29|CP031670|CRISPRCasFinder matches to position: 1731891-1731919, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

27. spacer 5.1|794577|29|CP031670|CRISPRCasFinder matches to position: 2077484-2077512, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaa	Protospacer
********.***********.********

28. spacer 5.1|794577|29|CP031670|CRISPRCasFinder matches to position: 2582313-2582341, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

29. spacer 8.1|1210186|37|CP031670|CRT matches to position: 843142-843178, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

30. spacer 8.1|1210186|37|CP031670|CRT matches to position: 1731886-1731922, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

31. spacer 8.1|1210186|37|CP031670|CRT matches to position: 2077479-2077515, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaggaaattctacagacaatgcaagttg	Protospacer
*******.***.*************************

32. spacer 8.1|1210186|37|CP031670|CRT matches to position: 2582310-2582346, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

33. spacer 8.1|1210186|37|CP031670|CRT matches to position: 2832886-2832922, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaaacaatgcaagttg	Protospacer
*******.***************.*************

34. spacer 8.2|1210242|37|CP031670|CRT matches to position: 799951-799987, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

35. spacer 8.2|1210242|37|CP031670|CRT matches to position: 1206274-1206310, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcgaaaagtcagcttacaaaaatgtgcaagtt	Protospacer
*****.****************** ************

36. spacer 8.2|1210242|37|CP031670|CRT matches to position: 1210354-1210390, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

37. spacer 8.2|1210242|37|CP031670|CRT matches to position: 2066614-2066650, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacgataatgtgcaggtt	Protospacer
**********************.**********.***

38. spacer 8.3|1210298|37|CP031670|CRT matches to position: 1206330-1206366, mismatch: 2, identity: 0.946

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggaaccccaatttctacagacaatgcaagtt	Protospacer
********* .**************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031670_5	5.1\|794577\|29\|CP031670\|CRISPRCasFinder	794577-794605	29	MN693281	Marine virus AFVG_25M371, complete genome	6448-6476	7	0.759

1. spacer 5.1|794577|29|CP031670|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 7, identity: 0.759

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtaggatttcttctaagtg	Protospacer
**************.*******.* .. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

731606 : 739426

Hokovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP70554.1\|731606_732662_-	Histidine protein kinase SaeS	A0A1V0SGX0	Hokovirus	2.1e-14	30.0
AXP70555.1\|732661_733348_-	Response regulator SaeR	NA	NA	NA	NA
AXP70556.1\|733322_733796_-	DoxX	NA	NA	NA	NA
AXP70557.1\|734137_734578_-	Electron transfer DM13	NA	NA	NA	NA
AXP70558.1\|734857_735442_-	hypothetical protein	NA	NA	NA	NA
AXP70559.1\|735540_736254_-	7-carboxy-7-deazaguanine synthase	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AXP70560.1\|736257_736677_-	6-carboxy-5,6,7,8-tetrahydropterin synthase	S4U060	uncultured_phage	6.3e-07	28.7
AXP70561.1\|736678_737347_-	7-cyano-7-deazaguanine synthase	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AXP70562.1\|737697_738291_+	Anthranilate synthase component 2	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
AXP70563.1\|738274_739426_+	Aminodeoxychorismate synthase component 1	A0A0B5J984	Pandoravirus	1.6e-23	35.7

DBSCAN-SWA_2

751398 : 766185

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP70572.1\|751398_752457_+	Histidinol-phosphate aminotransferase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7
AXP70573.1\|752807_753350_+	Putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AXP70574.1\|754029_754947_-	Putative lipid kinase	A0A1V0SBJ0	Catovirus	3.7e-07	22.0
AXP70575.1\|755216_756722_-	Di-/tripeptide transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AXP70576.1\|757062_757563_-	NADPH-dependent 7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AXP70577.1\|757582_758449_-	EamA-like transporter family protein	NA	NA	NA	NA
AXP70578.1\|759249_759648_+	ribonucleotide reductase stimulatory protein	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AXP70579.1\|759610_761716_+	Ribonucleoside-diphosphate reductase subunit alpha 2	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AXP70580.1\|761833_762805_+	Ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AXP70581.1\|763470_764484_+	Fe(3+) dicitrate transport system permease protein FecD	A0A2H4IY97	uncultured_Caudovirales_phage	2.2e-138	78.0
AXP70582.1\|764470_765427_+	Iron-uptake system permease protein FeuC	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AXP70583.1\|765423_766185_+	putative siderophore transport system ATP-binding protein YusV	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6

DBSCAN-SWA_3

854747 : 897982

Staphylococcus_phage(94.92%)

tail,transposase,capsid,portal,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP70670.1\|854747_855797_-\|transposase	Tn916 family transposase	A1KWY3	Staphylococcus_virus	5.9e-203	99.7
AXP70671.1\|855863_856106_-	hypothetical protein	NA	NA	NA	NA
AXP70672.1\|856116_857100_-	Putative teichuronic acid biosynthesis glycosyltransferase TuaG	NA	NA	NA	NA
AXP70673.1\|857155_857785_-	LexA repressor	Q4ZB06	Staphylococcus_virus	5.8e-113	99.5
AXP70674.1\|857938_858166_+	Helix-turn-helix domain protein	Q4ZB05	Staphylococcus_virus	1.6e-36	100.0
AXP70675.1\|858188_858965_+	Phage regulatory protein Rha	A0A2I6PD87	Staphylococcus_phage	9.0e-124	89.1
AXP70676.1\|858990_859251_+	hypothetical protein	A7TW91	Staphylococcus_phage	2.7e-40	100.0
AXP70677.1\|859274_859814_-	hypothetical protein	A7TW92	Staphylococcus_phage	1.7e-97	100.0
AXP70678.1\|859870_860623_+	Phage antirepressor protein KilAC domain protein	A0A1X9H0A0	Staphylococcus_phage	8.7e-140	100.0
AXP70679.1\|860639_860834_+	hypothetical protein	A0A1X9H0A2	Staphylococcus_phage	1.5e-19	100.0
AXP70680.1\|860864_861005_+	hypothetical protein	A0A2I6PDG0	Staphylococcus_phage	1.9e-16	100.0
AXP70681.1\|861019_861652_-	hypothetical protein	A7TW95	Staphylococcus_phage	1.5e-113	100.0
AXP70682.1\|861722_861944_+	hypothetical protein	A0A1X9H0Q4	Staphylococcus_phage	1.5e-31	100.0
AXP70683.1\|861936_862098_+	hypothetical protein	A7TWM3	Staphylococcus_phage	7.2e-20	98.1
AXP70684.1\|862190_862451_+	hypothetical protein	A0A1W6JQ03	Staphylococcus_phage	7.6e-43	100.0
AXP70685.1\|862459_862723_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
AXP70686.1\|862731_864675_+	hypothetical protein	A0A2I6PDH3	Staphylococcus_phage	0.0e+00	99.2
AXP70687.1\|864676_865597_+	recombination and repair protein RecT	A0A1V0E5D7	Staphylococcus_phage	1.0e-166	100.0
AXP70688.1\|865809_866295_+	Beta-lactamase superfamily domain protein	S4SWA4	Staphylococcus_phage	9.4e-87	100.0
AXP70689.1\|866295_866766_+	Single-stranded DNA-binding protein ssb	A0A0E3T9H6	Staphylococcus_phage	4.8e-80	99.4
AXP70690.1\|866795_867680_+	Replication initiation and membrane attachment	S4V6D4	Staphylococcus_phage	3.1e-136	95.9
AXP70691.1\|867686_867905_+	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
AXP70692.1\|867913_868318_+	Endodeoxyribonuclease RusA	A0A0E3XBN4	Staphylococcus_phage	1.4e-72	100.0
AXP70693.1\|868330_868699_+	PVL ORF-50-like family protein	W5RAK8	Staphylococcus_phage	8.2e-51	100.0
AXP70694.1\|868702_868945_+	hypothetical protein	A0EWX8	Staphylococcus_phage	3.9e-41	100.0
AXP70695.1\|869009_869459_+	YopX protein	A0A1X9H0C1	Staphylococcus_phage	2.1e-80	100.0
AXP70696.1\|869455_869965_+	hypothetical protein	A0A1X9H0D4	Staphylococcus_phage	3.2e-93	100.0
AXP70697.1\|869961_870372_+	hypothetical protein	A0A1X9H0B8	Staphylococcus_phage	2.3e-70	100.0
AXP70698.1\|870364_870901_+	dUTPase	A0A1X9H0S5	Staphylococcus_phage	1.4e-96	100.0
AXP70699.1\|870937_871144_+	hypothetical protein	A0A1X9H0C2	Staphylococcus_phage	1.3e-21	100.0
AXP70700.1\|871140_871290_+	Transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
AXP70701.1\|871289_871490_+	hypothetical protein	R9QT57	Staphylococcus_phage	1.1e-28	100.0
AXP70702.1\|871517_871934_+	hypothetical protein	A0A1X9H0U8	Staphylococcus_phage	2.9e-76	100.0
AXP70703.1\|872165_872465_+	HNH endonuclease	A0EWY8	Staphylococcus_phage	4.6e-52	100.0
AXP70704.1\|872595_872940_+	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
AXP70705.1\|872936_874598_+	Phage Terminase	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
AXP70706.1\|874613_875801_+\|portal	Phage portal protein	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
AXP70707.1\|875784_876522_+\|protease	ATP-dependent Clp protease proteolytic subunit	C8CH20	Staphylococcus_phage	2.3e-129	100.0
AXP70708.1\|876545_877691_+\|capsid	Phage capsid family protein	A0A1X9H072	Staphylococcus_phage	5.6e-215	100.0
AXP70709.1\|877710_877995_+	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	1.8e-45	100.0
AXP70710.1\|877984_878269_+	hypothetical protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
AXP70711.1\|878252_878615_+	hypothetical protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
AXP70712.1\|878611_879016_+	hypothetical protein	A0A2I6PDJ6	Staphylococcus_phage	4.3e-69	100.0
AXP70713.1\|879012_879420_+	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
AXP70714.1\|879420_880065_+	hypothetical protein	W5R9H4	Staphylococcus_phage	6.5e-120	100.0
AXP70715.1\|880380_880731_+	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
AXP70716.1\|880781_880919_+	hypothetical protein	A0A2I6PDX7	Staphylococcus_phage	3.4e-18	100.0
AXP70717.1\|880975_885505_+	Murein DD-endopeptidase MepM	A0A1X9H084	Staphylococcus_phage	0.0e+00	100.0
AXP70718.1\|885501_886986_+\|tail	Phage tail protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
AXP70719.1\|887001_890784_+	hypothetical protein	A0A1X9H096	Staphylococcus_phage	0.0e+00	99.9
AXP70720.1\|890776_890929_+	hypothetical protein	A0A1W6JPL6	Staphylococcus_phage	7.6e-19	100.0
AXP70721.1\|890974_891262_+	hypothetical protein	A0A1X9H0N7	Staphylococcus_phage	7.6e-44	100.0
AXP70722.1\|891317_891692_+	hypothetical protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
AXP70723.1\|892064_892838_+	Enterotoxin type A precursor	A0A1X9H080	Staphylococcus_phage	1.1e-145	100.0
AXP70724.1\|893334_893589_+\|holin	Bacteriophage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AXP70725.1\|894546_895038_+	Staphylokinase precursor	A0A1W6JQ12	Staphylococcus_phage	4.7e-86	99.4
AXP70726.1\|895727_896024_+	Bacterial SH3 domain protein	I1W626	Staphylococcus_phage	5.0e-51	99.0
AXP70727.1\|896292_896421_+	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	1.1e-15	100.0
AXP70728.1\|896491_896602_+	hypothetical protein	W5R8J7	Staphylococcus_phage	1.7e-12	100.0
AXP70729.1\|896603_896789_+	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.7e-26	100.0
AXP70730.1\|897424_897982_+	hypothetical protein	W5R8Q1	Staphylococcus_phage	5.7e-104	100.0

DBSCAN-SWA_4

1067663 : 1076136

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP70887.1\|1067663_1068146_+	N5-carboxyaminoimidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
AXP70888.1\|1068132_1069257_+	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA
AXP70889.1\|1069260_1069965_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AXP70890.1\|1069964_1070228_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AXP70891.1\|1070229_1070901_+	Phosphoribosylformylglycinamidine synthase 1	NA	NA	NA	NA
AXP70892.1\|1070893_1073083_+	Phosphoribosylformylglycinamidine synthase 2	A6N228	Microbacterium_phage	1.0e-140	39.7
AXP70893.1\|1073061_1074546_+	Amidophosphoribosyltransferase precursor	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
AXP70894.1\|1074538_1075567_+	Phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.3e-61	41.4
AXP70895.1\|1075569_1076136_+	Phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_5

1127793 : 1173866

Staphylococcus_phage(68.12%)

tail,head,capsid,lysis,portal,terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP70945.1\|1127793_1128276_+	Phosphopantetheine adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.6e-28	46.2
AXP70946.1\|1128337_1129477_-	hypothetical protein	NA	NA	NA	NA
AXP70947.1\|1129603_1130161_+	hypothetical protein	NA	NA	NA	NA
AXP70948.1\|1130240_1130414_+	50S ribosomal protein L32	NA	NA	NA	NA
AXP70949.1\|1130530_1131916_-	DNA-invertase hin	I1W625	Staphylococcus_phage	9.4e-265	99.8
AXP70950.1\|1132122_1132803_-	PemK-like protein	A0A2H4PQQ5	Staphylococcus_phage	5.1e-123	100.0
AXP70951.1\|1132838_1133546_-	putative HTH-type transcriptional regulator	A4ZF72	Staphylococcus_virus	1.8e-91	74.8
AXP70952.1\|1133717_1133957_+	helix-turn-helix protein	Q9MBT3	Staphylococcus_prophage	8.0e-39	100.0
AXP70953.1\|1133972_1134188_+	hypothetical protein	A0A0H3U4C7	Staphylococcus_phage	1.1e-34	98.6
AXP70954.1\|1134176_1134506_-	hypothetical protein	M9NS98	Staphylococcus_phage	2.3e-52	99.1
AXP70955.1\|1134556_1135309_+	Phage antirepressor protein KilAC domain protein	A0A0E3T9K5	Staphylococcus_phage	8.1e-138	99.2
AXP70956.1\|1135324_1136113_+	Phage antirepressor protein KilAC domain protein	A0EWP1	Staphylococcus_virus	4.2e-145	100.0
AXP70957.1\|1136129_1136324_+	hypothetical protein	E9LT75	Staphylococcus_phage	1.2e-29	100.0
AXP70958.1\|1136376_1136553_+	hypothetical protein	S4SVC9	Staphylococcus_phage	9.7e-26	100.0
AXP70959.1\|1136527_1136758_-	hypothetical protein	R4IG40	Staphylococcus_phage	2.3e-35	100.0
AXP70960.1\|1136816_1136945_+	hypothetical protein	C8CGY4	Staphylococcus_phage	7.3e-15	100.0
AXP70961.1\|1136937_1137099_+	hypothetical protein	Q4ZDA3	Staphylococcus_virus	5.0e-21	100.0
AXP70962.1\|1137190_1137451_+	hypothetical protein	Q4ZDA1	Staphylococcus_virus	1.2e-43	100.0
AXP70963.1\|1137460_1137682_+	hypothetical protein	A0A0E3TAJ7	Staphylococcus_phage	2.4e-34	100.0
AXP70964.1\|1137674_1138454_+	hypothetical protein	Q9G028	Staphylococcus_virus	2.5e-142	100.0
AXP70965.1\|1138483_1139038_+	hypothetical protein	A7TWM8	Staphylococcus_phage	1.0e-100	100.0
AXP70966.1\|1139050_1139722_+	hypothetical protein	Q9G025	Staphylococcus_virus	1.1e-125	97.8
AXP70967.1\|1139714_1140428_+	hypothetical protein	A0A1J0MGB2	Staphylococcus_phage	3.5e-90	78.9
AXP70968.1\|1140437_1141211_+	DNA replication protein DnaC	C5I645	Staphylococcus_phage	3.0e-143	99.6
AXP70969.1\|1141204_1141363_+	hypothetical protein	A0A2I6PDX0	Staphylococcus_phage	4.5e-22	98.1
AXP70970.1\|1141375_1141597_+	hypothetical protein	A0A0H3U2V4	Staphylococcus_phage	1.4e-34	98.6
AXP70971.1\|1141606_1142011_+	hypothetical protein	Q6R835	Staphylococcus_virus	2.3e-70	98.5
AXP70972.1\|1142015_1142201_+	hypothetical protein	A0A059T620	Staphylococcus_phage	5.1e-25	95.1
AXP70973.1\|1142201_1142573_+	PVL ORF-50-like family protein	A7TWN6	Staphylococcus_phage	1.2e-49	92.6
AXP70974.1\|1142573_1142822_+	hypothetical protein	S4SVD3	Staphylococcus_phage	1.6e-42	98.8
AXP70975.1\|1142834_1143239_+	hypothetical protein	S4V6D5	Staphylococcus_phage	1.3e-60	90.3
AXP70976.1\|1143235_1143583_+	YopX protein	D2JGL4	Staphylococcus_phage	5.9e-59	100.0
AXP70977.1\|1143579_1143969_+	hypothetical protein	I1W604	Staphylococcus_phage	1.3e-49	78.3
AXP70978.1\|1143961_1144204_+	hypothetical protein	E9LT37	Staphylococcus_phage	4.4e-37	100.0
AXP70979.1\|1144203_1144410_+	hypothetical protein	A0A1W6JNF7	Staphylococcus_phage	1.6e-24	81.2
AXP70980.1\|1144402_1144933_+	dUTPase	I1W653	Staphylococcus_phage	9.2e-96	100.0
AXP70981.1\|1144969_1145215_+	hypothetical protein	A9CR89	Staphylococcus_phage	6.5e-28	100.0
AXP70982.1\|1145211_1145418_+	hypothetical protein	A0A1W6JPY0	Staphylococcus_phage	1.6e-19	97.1
AXP70983.1\|1145414_1145618_+	hypothetical protein	B2ZYX5	Staphylococcus_phage	8.8e-31	98.5
AXP70984.1\|1145610_1145826_+	Transcriptional activator RinB	A0A0H3U4U1	Staphylococcus_phage	1.3e-16	73.2
AXP70985.1\|1145826_1145973_+	hypothetical protein	B2ZYX7	Staphylococcus_phage	2.2e-15	100.0
AXP70986.1\|1145987_1146407_+	hypothetical protein	I1W651	Staphylococcus_phage	2.0e-69	97.8
AXP70987.1\|1146593_1147088_+	Terminase small subunit	B7T0C5	Staphylococcus_virus	6.6e-88	98.8
AXP70988.1\|1147090_1148386_+\|terminase	Phage terminase large subunit	A0A0F6N3L3	Staphylococcus_phage	3.5e-253	98.1
AXP70989.1\|1148396_1149932_+\|portal	Phage portal protein, SPP1 Gp6-like	A1KX25	Staphylococcus_virus	1.8e-285	97.5
AXP70990.1\|1149938_1150934_+	Phage Mu protein F like protein	E0Y3K7	Staphylococcus_virus	1.7e-183	99.7
AXP70991.1\|1151006_1151177_+	hypothetical protein	Q4ZDF2	Staphylococcus_virus	3.3e-23	100.0
AXP70992.1\|1151311_1151926_+	hypothetical protein	I1W646	Staphylococcus_phage	2.9e-40	100.0
AXP70993.1\|1151939_1152914_+\|capsid	Phage capsid family protein	B7T0D2	Staphylococcus_virus	1.0e-180	98.1
AXP70994.1\|1152935_1153223_+	hypothetical protein	Q8SDU4	Staphylococcus_phage	6.8e-45	97.9
AXP70995.1\|1153231_1153564_+\|head,tail	Phage gp6-like head-tail connector protein	E0Y3L2	Staphylococcus_virus	7.1e-54	100.0
AXP70996.1\|1153560_1153863_+	hypothetical protein	E0Y3L3	Staphylococcus_virus	2.8e-49	96.0
AXP70997.1\|1153862_1154210_+	hypothetical protein	I1W643	Staphylococcus_phage	5.3e-60	100.0
AXP70998.1\|1154221_1154605_+	hypothetical protein	E0Y3L5	Staphylococcus_virus	2.6e-68	100.0
AXP70999.1\|1154623_1155199_+\|tail	Phage major tail protein 2	Q8SDU0	Staphylococcus_phage	3.8e-103	99.0
AXP71000.1\|1155260_1155626_+	Phage protein	Q8SDT9	Staphylococcus_phage	2.8e-59	100.0
AXP71001.1\|1155655_1156000_+	hypothetical protein	A0A0F6N3F7	Staphylococcus_phage	2.5e-57	100.0
AXP71002.1\|1156016_1159481_+	hypothetical protein	S4V989	Staphylococcus_phage	2.1e-260	93.7
AXP71003.1\|1159493_1160441_+\|tail	Phage tail protein	A0EWU0	Staphylococcus_virus	3.6e-183	100.0
AXP71004.1\|1160449_1162351_+\|tail	Prophage endopeptidase tail	Q8SDT5	Staphylococcus_phage	0.0e+00	100.0
AXP71005.1\|1162365_1164276_+	hypothetical protein	I1W633	Staphylococcus_phage	0.0e+00	99.4
AXP71006.1\|1164275_1166099_+	hypothetical protein	A0A0F6N3G2	Staphylococcus_phage	0.0e+00	99.8
AXP71007.1\|1166098_1166476_+	hypothetical protein	A9CRC6	Staphylococcus_phage	5.6e-55	100.0
AXP71008.1\|1166476_1166653_+	hypothetical protein	Q8LTH6	Staphylococcus_phage	6.1e-28	100.0
AXP71009.1\|1166693_1166993_+	hypothetical protein	Q4ZBP8	Staphylococcus_phage	1.3e-46	100.0
AXP71010.1\|1167129_1169028_+	Bifunctional autolysin precursor	A0EX80	Staphylococcus_virus	0.0e+00	99.5
AXP71011.1\|1169040_1170213_+	hypothetical protein	B2ZZ03	Staphylococcus_phage	4.9e-198	100.0
AXP71012.1\|1170218_1170614_+	hypothetical protein	Q4ZBW9	Staphylococcus_virus	1.6e-68	100.0
AXP71013.1\|1170669_1170972_+\|holin,lysis	Phage lysis protein, holin	A0A2I6PF56	Staphylococcus_phage	3.1e-48	100.0
AXP71014.1\|1170982_1172437_+	putative cell wall hydrolase LytN precursor	I1W626	Staphylococcus_phage	5.7e-289	99.8
AXP71015.1\|1172826_1173414_+	hypothetical protein	Q4ZBG7	Staphylococcus_virus	5.4e-97	100.0
AXP71016.1\|1173413_1173866_+	hypothetical protein	B7T0L3	Staphylococcus_virus	7.9e-72	100.0

DBSCAN-SWA_6

1561236 : 1648389

Staphylococcus_phage(72.97%)

tail,head,tRNA,transposase,capsid,lysis,portal,terminase,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP71345.1\|1561236_1562529_-\|tRNA	Asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	1.9e-54	30.0
AXP71346.1\|1562850_1565544_-	hypothetical protein	A0A1X9I5C8	Streptococcus_phage	8.2e-47	34.4
AXP71347.1\|1565567_1566539_-	Bifunctional ligase/repressor BirA	NA	NA	NA	NA
AXP71348.1\|1566525_1567728_-	CCA-adding enzyme	H7BUW3	unidentified_phage	3.2e-35	42.5
AXP71349.1\|1567732_1568875_-	GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase	NA	NA	NA	NA
AXP71350.1\|1569115_1569433_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
AXP71351.1\|1569769_1570468_-	Putative neutral zinc metallopeptidase	NA	NA	NA	NA
AXP71352.1\|1570521_1571109_-	hypothetical protein	NA	NA	NA	NA
AXP71353.1\|1571098_1571686_-	hypothetical protein	G3MAV7	Bacillus_virus	2.8e-08	27.2
AXP71354.1\|1571687_1572932_-	tetratricopeptide repeat protein	NA	NA	NA	NA
AXP71355.1\|1572938_1574237_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
AXP71356.1\|1574246_1575311_-	3-dehydroquinate synthase	NA	NA	NA	NA
AXP71357.1\|1575336_1576503_-	Chorismate synthase	A0A291AU41	Pandoravirus	7.6e-34	32.1
AXP71358.1\|1576888_1577089_-	hypothetical protein	NA	NA	NA	NA
AXP71359.1\|1577297_1577747_-	Nucleoside diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.4e-28	43.8
AXP71360.1\|1577838_1578798_-	Heptaprenyl diphosphate synthase component 2	A0A1V0SE37	Indivirus	1.3e-10	24.4
AXP71361.1\|1578799_1579525_-	Demethylmenaquinone methyltransferase	NA	NA	NA	NA
AXP71362.1\|1579527_1580100_-	Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1	NA	NA	NA	NA
AXP71363.1\|1580530_1580803_-	DNA-binding protein HU	A7KV42	Bacillus_phage	4.2e-28	73.3
AXP71364.1\|1580973_1581972_-	Glycerol-3-phosphate dehydrogenase [NAD(P)+]	NA	NA	NA	NA
AXP71365.1\|1581988_1583299_-	GTPase Der	NA	NA	NA	NA
AXP71366.1\|1583520_1584696_-	30S ribosomal protein S1	NA	NA	NA	NA
AXP71367.1\|1585407_1586067_-	Cytidylate kinase	NA	NA	NA	NA
AXP71368.1\|1586143_1587112_+	putative L-asparaginase	NA	NA	NA	NA
AXP71369.1\|1587226_1588213_-	Glucosaminate ammonia-lyase	NA	NA	NA	NA
AXP71370.1\|1588614_1590075_-	Elastin-binding protein EbpS	NA	NA	NA	NA
AXP71371.1\|1590227_1591607_-	ATP-dependent DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	2.9e-56	33.6
AXP71372.1\|1591596_1592550_-	hypothetical protein	NA	NA	NA	NA
AXP71373.1\|1592657_1592906_+	Ferredoxin	A0A127AYY7	Bacillus_phage	8.3e-15	48.0
AXP71374.1\|1593011_1593557_-	Riboflavin transporter RibU	NA	NA	NA	NA
AXP71375.1\|1594153_1595068_-	hypothetical protein	NA	NA	NA	NA
AXP71376.1\|1595082_1595289_-	hypothetical protein	NA	NA	NA	NA
AXP71377.1\|1595281_1596172_-	hypothetical protein	NA	NA	NA	NA
AXP71378.1\|1596289_1597207_-	hypothetical protein	NA	NA	NA	NA
AXP71379.1\|1597297_1597513_-	hypothetical protein	A0ZS61	Staphylococcus_virus	2.0e-25	100.0
AXP71380.1\|1598234_1599689_-	putative cell wall hydrolase LytN precursor	A0A0N6WMR3	Staphylococcus_phage	2.0e-289	99.8
AXP71381.1\|1599700_1600003_-\|holin,lysis	Phage lysis protein, holin	A0A2I6PF56	Staphylococcus_phage	1.2e-47	99.0
AXP71382.1\|1600138_1600474_-	hypothetical protein	A0A2H4JEB7	uncultured_Caudovirales_phage	2.8e-37	73.9
AXP71383.1\|1600483_1600648_-	hypothetical protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
AXP71384.1\|1600640_1601030_-	hypothetical protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
AXP71385.1\|1601029_1602496_-	hypothetical protein	A7TWK6	Staphylococcus_phage	6.0e-254	99.0
AXP71386.1\|1602495_1604406_-	hypothetical protein	A0A2I6PF35	Staphylococcus_phage	0.0e+00	100.0
AXP71387.1\|1604421_1604712_-	hypothetical protein	R4WEC3	Staphylococcus_phage	2.1e-49	100.0
AXP71388.1\|1604711_1606295_-\|tail	Prophage endopeptidase tail	A0A2I6PEQ5	Staphylococcus_phage	9.3e-309	100.0
AXP71389.1\|1606303_1607128_-\|tail	Phage tail protein	A0A2I6PER3	Staphylococcus_phage	2.0e-158	99.6
AXP71390.1\|1613540_1613891_-	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	1.1e-55	100.0
AXP71391.1\|1613948_1614404_-	Bacterial Ig-like domain (group 2)	A0A2I6PER6	Staphylococcus_phage	5.7e-78	100.0
AXP71392.1\|1614495_1615137_-\|tail	Phage major tail protein	A0A2I6PEP6	Staphylococcus_phage	5.9e-121	100.0
AXP71393.1\|1615171_1615567_-	hypothetical protein	A0A0K1LKC0	Staphylococcus_phage	1.7e-65	97.7
AXP71394.1\|1615567_1615969_-	hypothetical protein	A0A0K1LL98	Staphylococcus_phage	2.3e-67	98.5
AXP71395.1\|1615965_1616298_-	hypothetical protein	M9QX19	Staphylococcus_phage	1.4e-57	99.1
AXP71396.1\|1616309_1616588_-\|head,tail	Phage gp6-like head-tail connector protein	A0A2I6PEQ1	Staphylococcus_phage	4.6e-46	98.9
AXP71397.1\|1616656_1617820_-\|capsid	Phage capsid family protein	A0A0K1LKB5	Staphylococcus_phage	1.5e-215	99.2
AXP71398.1\|1617831_1618605_-\|protease	ATP-dependent Clp protease proteolytic subunit 1	A0A2I6PEQ7	Staphylococcus_phage	1.0e-135	99.2
AXP71399.1\|1618588_1619827_-\|portal	Phage portal protein	A0A2K9VBP0	Staphylococcus_phage	1.3e-233	99.3
AXP71400.1\|1619831_1621523_-	Phage Terminase	Q9B0E3	Staphylococcus_virus	0.0e+00	99.8
AXP71401.1\|1621512_1621818_-\|terminase	Phage terminase, small subunit	A0A2I6PEQ6	Staphylococcus_phage	2.9e-49	100.0
AXP71402.1\|1621928_1622243_-	HNH endonuclease	A7TWI8	Staphylococcus_phage	2.5e-56	100.0
AXP71403.1\|1622399_1622837_-	hypothetical protein	A0A2I6PDN2	Staphylococcus_phage	3.1e-73	95.9
AXP71404.1\|1622849_1624208_-	hypothetical protein	A0A2K9VBW3	Staphylococcus_phage	2.0e-259	99.1
AXP71405.1\|1624197_1624488_-	VRR-NUC domain protein	A0A2I6PEN7	Staphylococcus_phage	6.5e-51	100.0
AXP71406.1\|1624828_1627276_-	Virulence-associated protein E	A7TWI4	Staphylococcus_phage	0.0e+00	99.4
AXP71407.1\|1627327_1627528_-	hypothetical protein	A0A2I6PF41	Staphylococcus_phage	2.9e-26	100.0
AXP71408.1\|1627595_1627751_-	Transcriptional activator RinB	B5WZN3	Staphylococcus_phage	5.9e-19	98.0
AXP71409.1\|1627740_1627977_-	hypothetical protein	A7TWB3	Staphylococcus_phage	1.9e-37	100.0
AXP71410.1\|1628001_1628238_-	hypothetical protein	C8CH06	Staphylococcus_phage	3.1e-35	97.4
AXP71411.1\|1628274_1628811_-	dUTPase	A1KX85	Staphylococcus_virus	4.6e-95	100.0
AXP71412.1\|1628803_1628974_-	hypothetical protein	A1KX84	Staphylococcus_virus	9.7e-23	100.0
AXP71413.1\|1628960_1629215_-	hypothetical protein	A1KX83	Staphylococcus_virus	1.4e-38	100.0
AXP71414.1\|1629207_1629573_-	hypothetical protein	A1KX82	Staphylococcus_virus	4.2e-63	100.0
AXP71415.1\|1629569_1630019_-	YopX protein	A0A2I6PDH2	Staphylococcus_phage	9.3e-81	100.0
AXP71416.1\|1630083_1630326_-	hypothetical protein	A7TWH1	Staphylococcus_phage	1.1e-40	100.0
AXP71417.1\|1630340_1630541_-	hypothetical protein	A7TWH0	Staphylococcus_phage	5.6e-30	100.0
AXP71418.1\|1630543_1630801_-	hypothetical protein	A0A2I6PEN5	Staphylococcus_phage	4.9e-42	97.6
AXP71419.1\|1630800_1631202_-	PVL ORF-50-like family protein	A0A2I6PEL5	Staphylococcus_phage	8.9e-67	97.7
AXP71420.1\|1631201_1631387_-	hypothetical protein	A0A2I6PEM8	Staphylococcus_phage	7.0e-27	100.0
AXP71421.1\|1631399_1633361_-	DNA polymerase I, thermostable	A0A2I6PF18	Staphylococcus_phage	0.0e+00	97.9
AXP71422.1\|1633420_1633978_-	hypothetical protein	A0A2K9VBT2	Staphylococcus_phage	1.8e-97	100.0
AXP71423.1\|1634003_1635170_-	PD-(D/E)XK nuclease superfamily protein	B5WZM3	Staphylococcus_phage	8.3e-222	100.0
AXP71424.1\|1635166_1635529_-	hypothetical protein	Q4ZCP8	Staphylococcus_virus	2.2e-56	100.0
AXP71425.1\|1635543_1635867_-	hypothetical protein	A0A2I6PDL5	Staphylococcus_phage	1.3e-52	100.0
AXP71426.1\|1635946_1636108_-	hypothetical protein	A7TWM3	Staphylococcus_phage	8.6e-21	100.0
AXP71427.1\|1636120_1636384_-	hypothetical protein	A7TWG0	Staphylococcus_phage	5.7e-46	100.0
AXP71428.1\|1636408_1636624_-	hypothetical protein	A0A2I6PF01	Staphylococcus_phage	1.9e-31	100.0
AXP71429.1\|1636678_1637044_+	hypothetical protein	A0A2I6PF07	Staphylococcus_phage	2.4e-63	100.0
AXP71430.1\|1637012_1637258_-	hypothetical protein	A0A2I6PF15	Staphylococcus_phage	5.1e-41	100.0
AXP71431.1\|1637307_1637526_-	hypothetical protein	B5WZL5	Staphylococcus_phage	7.8e-33	100.0
AXP71432.1\|1637541_1638318_-	hypothetical protein	M1RZB2	Staphylococcus_phage	1.5e-142	100.0
AXP71433.1\|1638343_1638571_-	hypothetical protein	B5WZL3	Staphylococcus_phage	3.3e-34	100.0
AXP71434.1\|1638742_1639357_+	LexA repressor	B5WZL2	Staphylococcus_phage	9.0e-111	100.0
AXP71435.1\|1639372_1640293_+	DNA polymerase III PolC-type	B5WZL1	Staphylococcus_phage	7.3e-173	99.7
AXP71436.1\|1640388_1640571_+	hypothetical protein	A0A2I6PDR4	Staphylococcus_phage	5.3e-27	100.0
AXP71437.1\|1640627_1640753_+	hypothetical protein	A0A2I6PF02	Staphylococcus_phage	5.1e-13	100.0
AXP71438.1\|1640749_1641364_-	hypothetical protein	A7TW88	Staphylococcus_phage	7.9e-107	100.0
AXP71439.1\|1641489_1642695_+\|transposase	Tn916 family transposase	A0A2I6PEN0	Staphylococcus_phage	7.7e-223	100.0
AXP71440.1\|1642737_1644765_-	hypothetical protein	B5WZK7	Staphylococcus_phage	6.9e-115	97.7
AXP71441.1\|1644757_1645687_-	hypothetical protein	NA	NA	NA	NA
AXP71442.1\|1645931_1647683_-	Sensor protein SrrB	A0A1V0SGX0	Hokovirus	1.7e-21	33.6
AXP71443.1\|1647663_1648389_-	Transcriptional regulatory protein SrrA	W8CYM9	Bacillus_phage	3.5e-45	43.0

DBSCAN-SWA_7

1703513 : 1711825

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP71505.1\|1703513_1704299_-	High-affinity zinc uptake system ATP-binding protein ZnuC	A0A2H4PQG7	Staphylococcus_phage	6.1e-19	28.3
AXP71506.1\|1704424_1705315_-	putative endonuclease 4	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
AXP71507.1\|1705324_1706671_-	DEAD-box ATP-dependent RNA helicase CshB	A0A1V0SIR5	Klosneuvirus	5.3e-55	33.7
AXP71508.1\|1706784_1707885_-	Putative GTP cyclohydrolase 1 type 2	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
AXP71509.1\|1707887_1708565_-\|tRNA	tRNA (adenine(22)-N(1))-methyltransferase	NA	NA	NA	NA
AXP71510.1\|1708695_1709802_-	RNA polymerase sigma factor SigA	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
AXP71511.1\|1710025_1711825_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.6e-54	36.0

DBSCAN-SWA_8

1780905 : 1789948

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP71581.1\|1780905_1781424_-	Adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
AXP71582.1\|1781445_1783719_-	Single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.2e-62	28.8
AXP71583.1\|1783921_1786201_-	bifunctional preprotein translocase subunit SecD/SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AXP71584.1\|1786475_1786736_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AXP71585.1\|1786754_1787894_-\|tRNA	Queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AXP71586.1\|1787916_1788942_-\|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
AXP71587.1\|1788943_1789948_-	Holliday junction ATP-dependent DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_9

1922659 : 1996490

Staphylococcus_phage(88.89%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP71692.1\|1922659_1922971_-	molybdopterin biosynthesis-like protein MoeZ	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
AXP71693.1\|1922992_1925410_-\|tRNA	Leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.1
AXP71694.1\|1925697_1926879_-	Multidrug resistance protein MdtH	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
AXP71695.1\|1926988_1927942_+	coproporphyrinogen III oxidase	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AXP71696.1\|1927938_1928502_+	16S rRNA m(4)C1402 methyltransferase	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AXP71697.1\|1928621_1929023_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA
AXP71698.1\|1929542_1929794_-	hypothetical protein	Q9MBP7	Staphylococcus_prophage	3.0e-28	97.0
AXP71699.1\|1929790_1930282_-	hypothetical protein	A0A146ICT8	Staphylococcus_phage	2.4e-74	91.6
AXP71700.1\|1930628_1931456_-	Phospholipase YtpA	NA	NA	NA	NA
AXP71701.1\|1931689_1932691_+	Proline dehydrogenase 1	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
AXP71702.1\|1932812_1933277_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
AXP71703.1\|1933289_1934471_-	Riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	6.6e-227	99.7
AXP71704.1\|1934481_1935114_-	Riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
AXP71705.1\|1935120_1936164_-	Riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	6.3e-197	99.4
AXP71706.1\|1936644_1938147_-	hypothetical protein	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
AXP71707.1\|1938669_1938984_+	Transcriptional repressor SdpR	A0A2H4PQT4	Staphylococcus_phage	2.0e-53	100.0
AXP71708.1\|1938983_1940276_+	Arsenical pump membrane protein	A0A2H4PQU3	Staphylococcus_phage	1.9e-227	99.3
AXP71709.1\|1940293_1940689_+	Arsenate-mycothiol transferase ArsC2	A0A2H4PQT9	Staphylococcus_phage	6.3e-73	100.0
AXP71710.1\|1940983_1941838_-	Bifunctional autolysin precursor	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AXP71711.1\|1942113_1942338_-	hypothetical protein	NA	NA	NA	NA
AXP71712.1\|1942536_1943007_+	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	3.3e-81	98.1
AXP71713.1\|1943548_1943992_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	3.0e-55	85.0
AXP71714.1\|1944287_1944923_+\|protease	CAAX amino terminal protease self- immunity	NA	NA	NA	NA
AXP71715.1\|1945362_1946076_-	Transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AXP71716.1\|1946335_1946638_+	hypothetical protein	NA	NA	NA	NA
AXP71717.1\|1946893_1947259_+	Putative fluoride ion transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AXP71718.1\|1947255_1947609_+	Putative fluoride ion transporter CrcB	A0A2H4PQQ7	Staphylococcus_phage	1.0e-21	99.1
AXP71719.1\|1948164_1948989_+	hypothetical protein	A0ZS58	Staphylococcus_virus	1.7e-125	98.2
AXP71720.1\|1949021_1949630_+	Transposase DDE domain protein	A0ZS58	Staphylococcus_virus	3.8e-109	95.5
AXP71721.1\|1949692_1950526_-	Glyoxal reductase	A0A2H4PQR8	Staphylococcus_phage	9.6e-156	98.6
AXP71722.1\|1950737_1951646_-	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	3.2e-136	98.7
AXP71723.1\|1951770_1952964_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
AXP71724.1\|1953334_1954927_+	Phosphoenolpyruvate carboxykinase [ATP]	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AXP71725.1\|1955062_1955548_-	Transposase IS200 like protein	A0A1P8BMC0	Lactococcus_phage	4.9e-19	35.4
AXP71726.1\|1955922_1956693_-	Prolyl oligopeptidase family protein	A0A2H4PQM6	Staphylococcus_phage	7.3e-142	98.4
AXP71727.1\|1956673_1957153_-	Putative 8-oxo-dGTP diphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	1.5e-84	98.7
AXP71728.1\|1957212_1957470_+	Putative membrane protein insertion efficiency factor	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AXP71729.1\|1957466_1958468_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	4.8e-186	97.6
AXP71730.1\|1958472_1959951_-	2-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.0e-281	97.0
AXP71731.1\|1960109_1960592_-	hypothetical protein	A0A2H4PQN7	Staphylococcus_phage	2.5e-79	98.6
AXP71732.1\|1960903_1961518_+	SPBc2 prophage-derived endonuclease YokF precursor	A0A2H4PQM8	Staphylococcus_phage	9.5e-36	87.3
AXP71733.1\|1961598_1962594_+	Telomeric repeat-binding factor 2	A0A2H4PQN2	Staphylococcus_phage	7.1e-73	96.4
AXP71734.1\|1962669_1963296_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	7.1e-79	82.7
AXP71735.1\|1963336_1963681_+	hypothetical protein	A0A2H4PQN6	Staphylococcus_phage	6.3e-53	92.0
AXP71736.1\|1963778_1964330_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	1.0e-20	94.1
AXP71737.1\|1964547_1965189_-	hypothetical protein	A0A2H4PQN8	Staphylococcus_phage	2.6e-76	93.2
AXP71738.1\|1965489_1965666_-	hypothetical protein	NA	NA	NA	NA
AXP71739.1\|1965676_1966060_-	hypothetical protein	NA	NA	NA	NA
AXP71740.1\|1966663_1966807_-	Transposase	A0A2H4PQU1	Staphylococcus_phage	6.4e-20	100.0
AXP71741.1\|1967676_1968054_-	hypothetical protein	NA	NA	NA	NA
AXP71742.1\|1968573_1972686_-	hypothetical protein	A0A2H4PQT3	Staphylococcus_phage	0.0e+00	100.0
AXP71743.1\|1973535_1974735_-	EcoKI restriction-modification system protein HsdS	A0A2H4PQP5	Staphylococcus_phage	1.4e-229	99.7
AXP71744.1\|1974727_1976284_-	putative type I restriction enzymeP M protein	A0A2H4PQP4	Staphylococcus_phage	1.6e-289	100.0
AXP71745.1\|1976646_1977366_-\|protease	Serine protease SplF precursor	A0A2H4PQP1	Staphylococcus_phage	7.1e-131	99.6
AXP71746.1\|1977516_1978233_-\|protease	Serine protease SplE precursor	A0A2H4PQN5	Staphylococcus_phage	1.1e-131	100.0
AXP71747.1\|1978390_1979110_-\|protease	Serine protease SplD precursor	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
AXP71748.1\|1979230_1979950_-\|protease	Serine protease SplC precursor	A0A2H4PQP7	Staphylococcus_phage	8.4e-116	86.2
AXP71749.1\|1980074_1980782_-\|protease	Serine protease SplA precursor	A0A2H4PQN3	Staphylococcus_phage	2.6e-130	100.0
AXP71750.1\|1981745_1982312_+	hypothetical protein	A0A2H4PQH6	Staphylococcus_phage	3.3e-99	100.0
AXP71751.1\|1982785_1983484_-	hypothetical protein	A0A2H4PQH0	Staphylococcus_phage	3.8e-113	94.4
AXP71752.1\|1983480_1984242_-	ABC-2 family transporter protein	A0A2H4PQH2	Staphylococcus_phage	4.4e-131	100.0
AXP71753.1\|1984238_1984931_-	putative ABC transporter ATP-binding protein YxlF	A0A2H4PQG7	Staphylococcus_phage	6.2e-124	100.0
AXP71754.1\|1984953_1986327_-	Thermophilic serine proteinase precursor	A0A2H4PQH1	Staphylococcus_phage	2.9e-258	100.0
AXP71755.1\|1986336_1986855_-	Epidermin decarboxylase	A0A2H4PQG9	Staphylococcus_phage	2.0e-95	100.0
AXP71756.1\|1986870_1988115_-	Nisin biosynthesis protein NisC	A0A2H4PQH9	Staphylococcus_phage	5.1e-238	100.0
AXP71757.1\|1988107_1991101_-	hypothetical protein	A0A2H4PQG8	Staphylococcus_phage	0.0e+00	97.3
AXP71758.1\|1991165_1991309_-	Lantibiotic gallidermin precursor	A0A2H4PQH4	Staphylococcus_phage	5.3e-14	80.9
AXP71759.1\|1992430_1993414_-	Leucotoxin LukDv precursor	A0A2H4PQH7	Staphylococcus_phage	2.3e-185	99.1
AXP71760.1\|1993415_1994336_-	Leucotoxin LukEv precursor	A0A2H4PQI5	Staphylococcus_phage	2.3e-174	100.0
AXP71761.1\|1995233_1995689_+	hypothetical protein	Q4ZCB9	Staphylococcus_virus	1.7e-61	76.8
AXP71762.1\|1995701_1996490_+	hypothetical protein	A0A2H4PQI0	Staphylococcus_phage	5.3e-140	95.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031670

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection