CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP031684	Haemophilus influenzae strain P652-8881 chromosome, complete genome	2 crisprs	DinG,DEDDh,cas3,cas14i,WYL	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031684_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031684_1

1124878-1125026

Orphan

Consensus_repeat	Method
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP031684_1

>merge|CP031684|1|1124878-1125026|CRISPRCasFinder
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCAATAATGCTTTTATAATGTGAAATTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT

>CP031684|1|1|1124878-1125026|CRISPRCasFinder
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	CGTGCTCTACCAACTGAGCTATTCCCGCAATAATGCTTTTATAATGTGAAA
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
CP031684.1\|AXP36407.1\|1112352_1113090_+\|LamB/YcsF-family-protein	unknown	unknown	gnl\|CDD\|212111
CP031684.1\|AXP36420.1\|1129089_1129590_+\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|181859
CP031684.1\|AXP36406.1\|1111436_1112366_+\|5-oxoprolinase/urea-amidolyase-family-protein	unknown	unknown	gnl\|CDD\|129807
CP031684.1\|AXP36419.1\|1127302_1129030_+\|phosphoenolpyruvate-protein-phosphotransferase-PtsI	unknown	unknown	gnl\|CDD\|183017
CP031684.1\|AXP36418.1\|1126965_1127223_+\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|182777
CP031684.1\|AXP36415.1\|1123680_1124748_+\|undecaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|131433
CP031684.1\|AXP36422.1\|1130099_1130465_+\|YgiW/YdeI-family-stress-tolerance-OB-fold-protein	unknown	unknown	gnl\|CDD\|129260
CP031684.1\|AXP36421.1\|1129772_1129985_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224399
CP031684.1\|AXP36413.1\|1120115_1120922_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
CP031684.1\|AXP36409.1\|1114397_1115732_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
CP031684.1\|AXP36411.1\|1116925_1119274_-\|penicillin-binding-protein-1B	unknown	unknown	gnl\|CDD\|273952
CP031684.1\|AXP36412.1\|1119280_1119634_-\|UPF0231-family-protein	unknown	unknown	gnl\|CDD\|225654
CP031684.1\|AXP36416.1\|1125147_1125696_-\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
CP031684.1\|AXP36417.1\|1125766_1126807_+\|ribosome-small-subunit-dependent-GTPase	unknown	unknown	gnl\|CDD\|237039
CP031684.1\|AXP36425.1\|1132823_1134851_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|224211
CP031684.1\|AXP36424.1\|1131191_1132547_+\|two-component-system-sensor-histidine-kinase-QseC	unknown	unknown	gnl\|CDD\|182388
CP031684.1\|AXP36423.1\|1130529_1131195_+\|two-component-system-response-regulator-QseB	unknown	unknown	gnl\|CDD\|182387
CP031684.1\|AXP36410.1\|1115887_1116760_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
CP031684.1\|AXP36414.1\|1121014_1123606_+\|bifunctional-uridylyltransferase/uridylyl-removing-protein	unknown	unknown	gnl\|CDD\|234980
CP031684.1\|AXP36408.1\|1113133_1114327_+\|divalent-metal-cation-transporter	unknown	unknown	gnl\|CDD\|224826

Protein	Function_ID	Function_description	E-value
CP031684.1\|AXP36407.1\|1112352_1113090_+\|LamB/YcsF-family-protein	gnl\|CDD\|212111	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins. This subfamily of the LamB/YbgL family is represented by the Escherichia coli putative lactam utilization protein YbgL. Although their molecular function of member of this subfamily is unknown, they show high sequence similarity to the Aspergillus nidulans lactam utilization protein LamB, which might be required for conversion of exogenous 2-pyrrolidinone to endogenous GABA.	5.85636e-152
CP031684.1\|AXP36420.1\|1129089_1129590_+\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|181859	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional.	1.49426e-100
CP031684.1\|AXP36406.1\|1111436_1112366_+\|5-oxoprolinase/urea-amidolyase-family-protein	gnl\|CDD\|129807	TIGR00724, Uncharacterized_protein_HI_1730, biotin-dependent carboxylase uncharacterized domain. Urea amidolyase of Saccharomyces cerevisiae is a 1835 amino acid protein with an amidase domain, a biotin/lipoyl cofactor attachment domain, a carbamoyl-phosphate synthase L chain-like domain, and uncharacterized regions. It has both urea carboxylase and allophanate hydrolase activities. This model models a domain that represents uncharacterized prokaryotic proteins of about 300 amino acids, regions of prokaryotic urea carboxylase and of the urea carboxylase region of yeast urea amidolyase, and regions of other biotin-containing proteins. [Unknown function, General].	5.83574e-173
CP031684.1\|AXP36419.1\|1127302_1129030_+\|phosphoenolpyruvate-protein-phosphotransferase-PtsI	gnl\|CDD\|183017	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI.	0
CP031684.1\|AXP36418.1\|1126965_1127223_+\|HPr-family-phosphocarrier-protein	gnl\|CDD\|182777	PRK10850, PRK10850, phosphocarrier protein Hpr.	1.7508e-37
CP031684.1\|AXP36415.1\|1123680_1124748_+\|undecaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|131433	TIGR02380, ECA_wecA, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
CP031684.1\|AXP36422.1\|1130099_1130465_+\|YgiW/YdeI-family-stress-tolerance-OB-fold-protein	gnl\|CDD\|129260	TIGR00156, Uncharacterized_protein_HI_1709, TIGR00156 family protein. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae. [Hypothetical proteins, Conserved].	8.01756e-57
CP031684.1\|AXP36421.1\|1129772_1129985_+\|hypothetical-protein	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	9.985e-06
CP031684.1\|AXP36413.1\|1120115_1120922_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	4.00332e-158
CP031684.1\|AXP36409.1\|1114397_1115732_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
CP031684.1\|AXP36411.1\|1116925_1119274_-\|penicillin-binding-protein-1B	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
CP031684.1\|AXP36412.1\|1119280_1119634_-\|UPF0231-family-protein	gnl\|CDD\|225654	COG3112, COG3112, Uncharacterized protein conserved in bacteria [Function unknown].	6.22982e-60
CP031684.1\|AXP36416.1\|1125147_1125696_-\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	3.63664e-134
CP031684.1\|AXP36417.1\|1125766_1126807_+\|ribosome-small-subunit-dependent-GTPase	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
CP031684.1\|AXP36425.1\|1132823_1134851_+\|BCCT-family-transporter	gnl\|CDD\|224211	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane].	0
CP031684.1\|AXP36424.1\|1131191_1132547_+\|two-component-system-sensor-histidine-kinase-QseC	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	3.24236e-178
CP031684.1\|AXP36423.1\|1130529_1131195_+\|two-component-system-response-regulator-QseB	gnl\|CDD\|182387	PRK10336, PRK10336, two-component system response regulator QseB.	1.65154e-100
CP031684.1\|AXP36410.1\|1115887_1116760_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
CP031684.1\|AXP36414.1\|1121014_1123606_+\|bifunctional-uridylyltransferase/uridylyl-removing-protein	gnl\|CDD\|234980	PRK01759, glnD, bifunctional uridylyltransferase/uridylyl-removing protein GlnD.	0
CP031684.1\|AXP36408.1\|1113133_1114327_+\|divalent-metal-cation-transporter	gnl\|CDD\|224826	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism].	2.41376e-86

>CP031684.1|AXP36415.1|1123680_1124748_+|undecaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MLSIFVTFLGAFLTLIVMRPLANWIGLVDKPNYRKRHQGAIPLIGGVSLFIGNLCYYLMEWDQLRLPYLYLFSIFVLLAIGILDDRFDISPFLRAGIQAILAILMIDLGNIYLDHLGQILGPFQLTLGSIGLIITVFATIAIINAFNMIDGIDGLLGGLSCVSFAAIGILMYRDGQMDMAHWSFALIVSILPYLMLNLGIPFGPKYKVFMGDAGSTLIGFTIIWILLLSTQGKGHPMNPVTALWIIAIPLIDMVAIIYRRVRKGKSPFRPDRLHVHHLMVRAGLTSRQAFLLITFVSAVCATIGILGEVYYVNEWAMFVGFFILFFLYVYSITHAWRITRWVRRMKRRAKRLKKA
>CP031684.1|AXP36414.1|1121014_1123606_+|bifunctional-uridylyltransferase/uridylyl-removing-protein
MLFPLSLSSPLTPSAVKIERENLKQFELENFSRYSIFELVENRSDFYDALLIQLWQEMGLSEQLGISLIAVGGYGRREMFPLSDLDFLILVEQTPIPEIEEKITQFIQFLWDCGFEVGHSVRTLQQCESEGKQDITIATNLLEARFLIGNRPHFDALNELVKRADFWSKEGFFNAKVQEQIERYQRYHNTAYNLEPDIKYSPGGLRDLHLLYWVALHHSGAQTLEDILQSGFIYPQEYQQLQESRAFLFKVRFALHLILTRYDNRLLFDRQIKVSELLGFRGEGNQAVEKMMKCFFQALHRISLISNLLIQHYRENVLSSNQATVIEQLDDDFQLINQCLCLRNSLVFQEKPARILDLFFYLTQYEQANIHSDTLRQLQISLEQLPQKLCEIPEAREKFLRLFNQPNSIKRAFMPMHQYGVLTAYLPQWQAIEGLMQFDLFHIYTVDEHTLRVMLKLESFLSQESAQEHPIAHRIFSQLSDRTLLYIAALFHDIAKGRGGDHAELGAKDVANFARLHGLDRREIDTLAWLVQSHLLMSITAQRRDIHDPEVVMNFAEAVQNQVRLDYLTCLTVADICATNGNLWNSWKRSLFASLYEFTEQQFAQGMKELLDYSEKSAENRKLAQQILTQDYSDIMPISIDQLWERCPEDYFVRNTPKQIAWHTSLLVDLVEALLVKISNRFSLGGTEVFIYCQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRRRELEQALTLALQSEKLSALSITPNRQLQHFTVQTDVRFLHENKKEHTEMELVALDKAGLLAQVSQIFSELNLNLLNAKITTVGEKAEDFFILTNQFGQALDSQQREILRNVLYRNIG
>CP031684.1|AXP36413.1|1120115_1120922_+|type-I-methionyl-aminopeptidase
MAIPIRTEKEIVKLREVCKLASDVLVMIEPYVKAGVTTGELDRICHEYMVNEQKVIPACLNYHGFPKATCISINEVVCHGIPSDDKVLKNGDIMNIDVTVIKDGYFGDNSKMYIVGGETNIRSKKLVEAAQEALYVGIRTVKPDIRLNEIGKAVQKYTESQTFSVVREYCGHGVGTEFHCEPQVLHYYADDGGVILKPGMVFTIEPMINAGKKEVRVMGDGWTVKTKDRSHSAQYEHQLVVTETGCEVMTIRDEEIAEGRISRIMINV
>CP031684.1|AXP36412.1|1119280_1119634_-|UPF0231-family-protein
MDFQFTHYQGNVSVKCSMEHIALANWFNTEVRSNSDKILTALSTAKSLIENQEKVLVGAEYTLFLNSDEVMVRANNLAIESDEILEQDFHYYDEESLAFCGTQDFIHFLQSYVDFIA
>CP031684.1|AXP36411.1|1116925_1119274_-|penicillin-binding-protein-1B
MTSQHSAKKSSKNTPKNNRTFKGFLLKFSFTTLVLTIFYGGYLDWQIRSKMDGQIWHLPAEVYSRLESVKIADNLAFDEVIQILLDNEYRQTTMVAAPGDFKLEDDSIVVLRRAFPFPDKAEPQRVLRLRFSHNKLSRIEDLVTVKTVDEFRLAPKLIAMLQSDNEDRLAIPLQNYPRLLIDTLILTEDRRFYEHNGINPVGILRALIANIRAGQTVQGGSTLTQQLVKNLFLSRERTITRKANEALMSLVLDWRYDKNRILETYLNEIYLGQNGDTQIHGFELASQFYFGRSIREISLDQIALLVGMVKGPSLYNPWRNPQNALERRNIVLKLMLEHKMIGDELYQLLSQRPLGVQKKGQISRKYPAFIQTLQADLRRELGEHKMSSLLGARIFSTMDLKQQAQAENAVVNTVSQLQLKTKNPHLESAMIITDYRTGEIRAVVGGLQTQYAGFNRALMAKRQIGSLVKPSIYLTALSNPEQFRLNTLINNQPITINVKGSPPWQPRNYDKKYSGSVMLMDALARSLNIPTVNIGMKVGLSKVIDTQKAMGWDNVEIPKVPAMLLGSYTISPYDVTKLYQTIANQGGRISLTTVDSITDRQGNLIFQHDKSVKQVVPQEAAFQTLFAMQQTVERGTARSLQKDYADLHLAGKTGTTNEARDTWFVGIDGKNISTVWLGRDDNGETKLTGASGALQIYKDYLNRTNIEKLAITPPATVKWVGINQYGGWDCESYRTIPVWLNNGQNFCGEIASPSFTPTEAETTTPPQESLWDVLDNPNPPAQ
>CP031684.1|AXP36410.1|1115887_1116760_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MTQQSLTLSLKKIYSGKVRDLYEIDDKRMLMVASDRLSAFDVILDDPIPRKGEILTQISNFWFNKLAHIMPNHFTGDSVYDVLPKEEADLIKDRAVVCKRLTPIKIESIVRGYLTGSGLKDYKQTGTICGLKLPENLVEASKLPEAIFTPSSKEEVGNHDINISYAECEKLIGSDLAAQVKEKAIALYTEASEYALTKGIIICDTKFEFGLDENGTLTLMDEVLTPDSSRFWSVDTYQAGTNPPSFDKQFVRDWLENSGWNKQAPAPKVPKNIIQKTVDKYQEALDLLTK
>CP031684.1|AXP36409.1|1114397_1115732_-|argininosuccinate-synthase
MSNTILQNLPKGQKVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYNAIPKKAMAYGAENARLIDCRSQLAHEGIAAIQCGAFHISTGGIPYFNTTPLGRAVTGTMLVAAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPNLKIYKPWLDVQFIEELGGRLEMSQFLIENGFDYKMSVEKAYSTDSNMLGATHEAKDLEQLSTGMKIVKPIMGVAFWDEKVEIKPETVTVTFEDGVPVALNGKHFDNAVDLILEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRINGIRLGRLLYQGRWFDPQALMLRETAQRWVAKAITGTVTLELRRGNDFTILNTESPNLTYEAERLSMEKVEDAPFDPVDRIGQLTMRNLDVSDTRGKLGIYAQTGLLSAIKDSVLPQLGKK
>CP031684.1|AXP36408.1|1113133_1114327_+|divalent-metal-cation-transporter
MASITHRRNAVLGAAFLMATSAIGPGFLTQTATFTNTLLASFGFVILLSILLDIGAQLNIWRIVIVSGKRAQDISNAVFPKAGYFLAALIVMGGLAFNIGNVGGAGLGLNSIFGIAPEMGAVISGIIAILIFLRKEAGLLMDRFAQLMGFIMVALTFYVMFKTEPPVAEAAYHSFIPEKIDPIAIVTLVGGTVGGYITFAGAHRLLDAGIQGEKAMAEVSRSSVSAILIASTMRVVLFLAVLGVVSKGVSLNPKNPAETPFEYVAGNFGQVLFGVVIWAASVTSVIGAAYTSVSFLTTLCPTIERNRNRWIIAFIVISTVVLVTVGKPAAVLVFVGTLNGLILPIALALILLAAYRSDIVGTYKHPVFLAFSGWFVVIIMAILSGKTIISYISSFFS
>CP031684.1|AXP36407.1|1112352_1113090_+|LamB/YcsF-family-protein
MKKIDLNADIAEGFPFDESLLQLLSSANIACGLHAGGAKEMQSAVKFAKENKVRIGAHPSFPDRENFGRTAMALSSQELIAHLRYQLGALKAICDGEGAVISYVKPHGALYNQAAKDEKIARVIAQTVYQFDPNLKLMGLAGSLMLRIAEEEKLQTISEVFADRHYMPDGSLVPRSQPNAMVESDKEAIQQVLQMVTKGQVNAIDGSLVPVKAESICLHGDNQHSLQFAKRIVEELEKNHIKITA
>CP031684.1|AXP36406.1|1111436_1112366_+|5-oxoprolinase/urea-amidolyase-family-protein
MIDILDVKSRATIQDLGRFGLRRFGISHCGAMDKLALRAGNILLGNAENVPAIEVPLGGITLQFQQDMNFCVTGAFYEMMLDDKPVFAYWRYQVRAGQILKMTRAKIGMYGYLCVQGGFVLPQALNSCSTDLRAEIGGIEGRCLQAGDQLQTANDHILRSEIGIAPIPLRDVIRALPSSEYQAFKRKSQYYWWRNEWTLQSNSDRMGYRFQGQTLELKQPLEMLSHAIQFGSVQVPPSGQPIILMADAQTTGGYPKIANVIDVDLGALAQVRLGSTIKFEAVSLQEAAKLRRKNEIYLDQIRRIVDEKN
>CP031684.1|AXP36416.1|1125147_1125696_-|oligoribonuclease
MPFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARWKPEILEGFKKENTHLALDDIRESIKELAYYREHFMKLD
>CP031684.1|AXP36417.1|1125766_1126807_+|ribosome-small-subunit-dependent-GTPase
MAKRKLTQNQTRRIQSNNAKTLHRHKKKDIEWSDEMLGESQEGVVVTRYSIHADVENEQGEIYRCNLRRTLSSLVVGDKVVWRKGNEQLQGVSGVIEAIHPRENEISRPDYYDGLKPIAANIDRIIIVSAVLPTLSLNIIDRYLVVCEIAGITPLIVLNKVDLLAQEQRQEIEDQLKIYQDIGYEILMISAKSGENMEKLTALLAQGTAIFVGQSGVGKSSLINHILPSVNAQVGDVSETSGLGQHTTTSSRLYHLPQGGNLIDSPGIREFGLWHLDAEQITKGYREFQYVLGTCKFRDCKHLSDPGCALREAVEQGKISPVRYDNYHRLIESLSETKSQRHFSLV
>CP031684.1|AXP36418.1|1126965_1127223_+|HPr-family-phosphocarrier-protein
MYSKDVEIIAPNGLHTRPAAQFVKEAKAFSSEITVTSGGKSASAKSLFKLQTLVLTQGTILTISADGEDEQQAVDHLVALIPTLE
>CP031684.1|AXP36419.1|1127302_1129030_+|phosphoenolpyruvate-protein-phosphotransferase-PtsI
MISGILASPGIAFGKALVLKEEKIVLDTQKITDDQIDAEVARFYEGRAAAVEQLNSIRERALISLGEEKAAIFEGHLMILEDEELEEEILDYLRSNKVNAGVAASKILDQQVTMLSEIDDEYLKERAGDIRDIANRLVKNILGMYIVDLGDIQEESILVAYDLTPSETAQLNLEKVLGVVTDIGGRTSHTSIMARSLELPAIVGTNKVTKLVNTGDYLILDAINNQVYINPTASQIDELKALEAKISEEKAELAKLKDLPAITLDGHKVDVVANIGTIRDCDGAERNGAEGIGLYRTEFLFMDREQLPTEEEQFIAYKQVVEAMNGRLTVLRTMDIGGDKELSYLDLPKEMNPFLGWRAIRIALDRREILNAQLRAVLRASAFGKLAVMFPMIISVEEIRELKAVIETLKAELREEGRLFDNNIQVGVMVETPSAAVNAKFLAKEVDFFSIGTNDLTQYTLAVDRGNEFISHLYNPMHPSVLGLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISVPRIKKLIRNVNFQDAKVLADTALQKPTAAEIDQLIEEFLLENSLN
>CP031684.1|AXP36420.1|1129089_1129590_+|PTS-glucose-transporter-subunit-IIA
MGLFDKLFGSKENKSVEVEIYAPISGEIVNIEDVPDVVFSEKIVGDGVAVRPIGNKIVAPVDGVIGKIFETNHAFSMESKEGVELFVHFGIDTVELKGEGFTRIAQEGQSVKRSDTVIEFDLALLESKAKSVLTPIVISNMDEISCIVKKSGEVVAGESVVLALKK
>CP031684.1|AXP36421.1|1129772_1129985_+|hypothetical-protein
MQNIQYECGETHHLKAQSASILLVMKGQLNLRSETTALSLKQGKVAFITAGAAYEVEGLIEGYAVVAKLP
>CP031684.1|AXP36422.1|1130099_1130465_+|YgiW/YdeI-family-stress-tolerance-OB-fold-protein
MKKFALATIFALATTSAFAGFNGNNSQGGFQQAAPAAISVKQALSAADNSMITLVGNITQQIDDDEFWFTDGTGQIKIEIKKRVWNGLNVDSKDKVKIYGKLDNEVFEKAELDVLRIEKVE
>CP031684.1|AXP36423.1|1130529_1131195_+|two-component-system-response-regulator-QseB
MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFTLAEVAARLQALIRRRYGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSSWDEEISSGALDVHIYNLRQKLGKQFIRTVHGVGYALGQVEK
>CP031684.1|AXP36424.1|1131191_1132547_+|two-component-system-sensor-histidine-kinase-QseC
MKNRSLTLRLISVLCLTALFVWLGSTLVAWWQVRHDVNKVFDAQQVLFAERLANSDLSTILLESSTTLNKNSQSVLKKSYDDDALAFAIFSKTGKLLFSDGRNGKDFIFNYKTGFYNANIYDDDDKWRIFWRMAANGELVIAVGQELDYREDLIEEMILGQMWIWFASLPILIIVLGWLIHKELRPIKRLSQEVQTRKSGDVSLLNTEGLPVEILPLVKNLNQFFDRTSAMLQRERRFTSDAAHELRSPLAALRIQTEVAQLAGDDVALREQALLHLTQGIDRASQLIEQLLTLSRLDNLQALETLQLLDWEAIVQSLISERYFVAEKRKITLVFEKESEPKQKQGQSILVSLMLRNLLDNAIKYCPEDTIVSVKISSSQIIIEDNGGGVEPEDLKKLGQRFYRPAGQNEKGSGLGLSIVMRIAELHGFKVRLENVVKEGRRIGLKAIISL
>CP031684.1|AXP36425.1|1132823_1134851_+|BCCT-family-transporter
MSLSQFMTKRTSFNPLVIGVTLFFILLLMAMIFIAPEQTQALLNQAKSGIFANFSWFYVLTFSVFLGFLLILSVSSLGNIKLGQDEEEPEFSFLSWLAMLFAAGMGVGLMFFGVAEPLTHYLSDITVGSAEHKQQEALLHTLFHWGIHAWAVYGTIALALAYFGFRYKLPLALRSCFYPLLKDRINGKIGDAIDVMALLATLFGIITTLGFGSSQLGAGLEQIGWISQNSFALQVGVIVVVMCLAVFSAISGIGKGVKILSEINLTLAFCLLLFVLISGPTLYLLSAFSDNIGNYFSNLVQLSFKTYAYEQEHTSWFSGWTVLYWAWWCSWAPFVGLFIARISKGRTIREFIFGVLVIPSLFGILWFTVFGNTAVWLNDGIAAGGLGEFISSPEILLFKFLNYLPLPTITGFVSLLVISLFFITSADSGIYVLNNIASRDKSLASPAWQAIMWGTLMSVVAIVLMQSGGLANLQTMTLIVALPFALLMLVMCFSLWKGLIADKKYFSTKVNPTSIFWSGDKWKSHLEQMMNQTQEKDILRFLKNTALPAMRELRQELTGKYNLSVEINTLFEQEEPALELVIHKESMRDFMYGIKSVGREVSEQLINDENLPHIQHSVTYEPYTYFFDGRVGYDVQYMDQDELIADMLKQYERYLSLLDDVGQELMAHEQTELAE

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Crispr_ID: CP031684_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031684_2

1153733-1153820

TypeV

Consensus_repeat	Method
ACCTTCCCCCGCAAGCAAGGGAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031684_2

>merge|CP031684|2|1153733-1153820|CRISPRCasFinder
ACCTTCCCCCGCAAGCAAGGGAAGGCAAGATTTTCTTTGAGCCTCTTTTTGTCACTTTGTGATACCTTCCCCCGCAAGCAGGGGAAGG

>CP031684|2|2|1153733-1153820|CRISPRCasFinder
ACCTTCCCCCGCAAGCAAGGGAAGG	CAAGATTTTCTTTGAGCCTCTTTTTGTCACTTTGTGAT
ACCTTCCCCCGCAAGCAGGGGAAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP031684.1\|AXP36450.1\|1163959_1165912_-\|adhesin	unknown	unknown	gnl\|CDD\|375681
CP031684.1\|AXP36440.1\|1153015_1153651_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|182661
CP031684.1\|AXP36442.1\|1154544_1155168_-\|electron-transport-complex-subunit-G	unknown	unknown	gnl\|CDD\|179350
CP031684.1\|AXP36437.1\|1148890_1149655_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
CP031684.1\|AXP37044.1\|1147090_1147876_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133038
CP031684.1\|AXP36436.1\|1147985_1148753_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182640
CP031684.1\|AXP37045.1\|1149828_1150518_+\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181841
CP031684.1\|AXP36439.1\|1151583_1152957_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
CP031684.1\|AXP36449.1\|1161726_1163883_+\|TIGR01666-family-membrane-protein	unknown	unknown	gnl\|CDD\|130727
CP031684.1\|AXP36433.1\|1144328_1145390_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340847
CP031684.1\|AXP36435.1\|1146186_1147071_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
CP031684.1\|AXP36446.1\|1158873_1159452_-\|electron-transport-complex-subunit-A	unknown	unknown	gnl\|CDD\|235352
CP031684.1\|AXP36443.1\|1155167_1156244_-\|electron-transport-complex-subunit-D	unknown	unknown	gnl\|CDD\|234844
CP031684.1\|AXP36447.1\|1159734_1160796_-\|protease-SohB	unknown	unknown	gnl\|CDD\|236978
CP031684.1\|AXP36445.1\|1158204_1158786_-\|electron-transport-complex-subunit-B	unknown	unknown	gnl\|CDD\|235347
CP031684.1\|AXP36434.1\|1145401_1146175_+\|glycosyltransferase-family-25-protein	unknown	unknown	gnl\|CDD\|225843
CP031684.1\|AXP36438.1\|1150504_1151560_+\|molybdenum-import-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
CP031684.1\|AXP36444.1\|1156248_1158204_-\|electron-transport-complex-subunit-RsxC	unknown	unknown	gnl\|CDD\|235334
CP031684.1\|AXP36441.1\|1153835_1154543_-\|electron-transport-complex-subunit-E	unknown	unknown	gnl\|CDD\|237091
CP031684.1\|AXP36448.1\|1160993_1161659_+\|DUF2057-domain-containing-protein	unknown	unknown	gnl\|CDD\|234990

Protein	Function_ID	Function_description	E-value
CP031684.1\|AXP36450.1\|1163959_1165912_-\|adhesin	gnl\|CDD\|375681	pfam18254, HMw1_D2, HMW1 domain 2. This domain is found in Actinobacillus pleuropneumoniae HMW1C (ApHMW1C). HMW1 adhesin is an N-linked glycoprotein that mediates adherence to respiratory epithelium through N-glycosylation of protein acceptor sites and O-glycosylation of sugar acceptor sites. This domain forms an all alpha domain (AAD) when combined with the N-terminal domain. The AAD interacts extensively with the C-terminal GT-B fold in order to create a unique groove with the potential to accommodate the acceptor protein.	1.79173e-48
CP031684.1\|AXP36440.1\|1153015_1153651_-\|endonuclease-III	gnl\|CDD\|182661	PRK10702, PRK10702, endonuclease III; Provisional.	2.07255e-139
CP031684.1\|AXP36442.1\|1154544_1155168_-\|electron-transport-complex-subunit-G	gnl\|CDD\|179350	PRK01908, PRK01908, electron transport complex protein RnfG; Validated.	1.08851e-127
CP031684.1\|AXP36437.1\|1148890_1149655_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	1.8168e-97
CP031684.1\|AXP37044.1\|1147090_1147876_+\|glycosyltransferase	gnl\|CDD\|133038	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.	2.3253e-117
CP031684.1\|AXP36436.1\|1147985_1148753_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	2.3464e-84
CP031684.1\|AXP37045.1\|1149828_1150518_+\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	1.3737e-137
CP031684.1\|AXP36439.1\|1151583_1152957_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	1.13115e-164
CP031684.1\|AXP36449.1\|1161726_1163883_+\|TIGR01666-family-membrane-protein	gnl\|CDD\|130727	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are >700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS. [Cell envelope, Other].	0
CP031684.1\|AXP36433.1\|1144328_1145390_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340847	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.	3.30343e-135
CP031684.1\|AXP36435.1\|1146186_1147071_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	7.68429e-32
CP031684.1\|AXP36446.1\|1158873_1159452_-\|electron-transport-complex-subunit-A	gnl\|CDD\|235352	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional.	5.78855e-111
CP031684.1\|AXP36443.1\|1155167_1156244_-\|electron-transport-complex-subunit-D	gnl\|CDD\|234844	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed.	0
CP031684.1\|AXP36447.1\|1159734_1160796_-\|protease-SohB	gnl\|CDD\|236978	PRK11778, PRK11778, putative inner membrane peptidase; Provisional.	0
CP031684.1\|AXP36445.1\|1158204_1158786_-\|electron-transport-complex-subunit-B	gnl\|CDD\|235347	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional.	1.12731e-113
CP031684.1\|AXP36434.1\|1145401_1146175_+\|glycosyltransferase-family-25-protein	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	6.22864e-55
CP031684.1\|AXP36438.1\|1150504_1151560_+\|molybdenum-import-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
CP031684.1\|AXP36444.1\|1156248_1158204_-\|electron-transport-complex-subunit-RsxC	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0
CP031684.1\|AXP36441.1\|1153835_1154543_-\|electron-transport-complex-subunit-E	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	4.5237e-131
CP031684.1\|AXP36448.1\|1160993_1161659_+\|DUF2057-domain-containing-protein	gnl\|CDD\|234990	PRK01904, PRK01904, DUF2057 domain-containing protein.	1.44456e-117

>CP031684.1|AXP36440.1|1153015_1153651_-|endonuclease-III
MNKTKRIEILTRLREQNPHPTTELQYNSPFELLIAVILSAQATDKGVNKATEKLFPVANTPQAILDLGLDGLKSYIKTIGLFNSKAENIIKTCRDLIEKHNGEIPENREALEALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVCNRTNFAAGKDVVKVEEKLLKVVPNEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEKVEF
>CP031684.1|AXP36439.1|1151583_1152957_-|sodium-dependent-transporter
MTTNNKQRQTWSSRLTYVMTVAGATVGFGATWRFPYLVGENGGGAYVLLFCIAMIVIGIPMILVENVIGRRLRVNSIDAFGDKILDKGKGISKYWKILGYMGLLGAFGIMAYYMVLGGWVISYIISLISGTLDISTPITKDIAKNFYDLHIGNSPYEIIFYTLLFVIVNYIILAKGIIGGIERSVKYLMPLLFIFLIGMVIRNVTLPGAMEGITFYLKPDFSKITPQLFIFVLGQVFFALSLGFGVLITLSSYLNKEENLIHTAVITGFTNTIIAVLAGFMIFPSLFTFGIEPNAGPTLVFQSLPIVFSHLWAGKFFAIIFFGLLLIAALTTSITIYEVIITALQEKLRMRRGKAIVLTLSGIFLLGNIPAILGDNLWKNVTIFGKSIFDFYDYASGNILFMLTALGCAIFVGFVLKDEAKKELSSTKYSTFIKIWFNYVKFVVPLIILVIFISNLF
>CP031684.1|AXP36438.1|1150504_1151560_+|molybdenum-import-ATP-binding-protein-ModC
MLQINVKKQLGKLALQANIQVPDQGVTAIFGLSGSGKTSLINLVSGLIQPDEGFIRLNDRTLVDMESQESLPTHLRKIGYVFQDARLFPHYTVKGNLRYGMKHVSQDDFNYIVDLLGITHLLKRYPLTLSGGEKQRVAIGRALLTDPDILLMDEPLSALDVPRKRELMQYLERLSKEINIPILYVTHSLDELLRLADRVVLMENGIVQAYDSVEKIWNSPIFAPWKGENEQSSVLALPVHLHNPPYKMTALSLGEQALWIHQVPANVGERVLVCIYSSDVSIILQKPEQTSIRNILRGKITQIEIQDSRVDLAVLVEGNKIWASISKWAQNELRFAVGQDVYVQIKAVSVM
>CP031684.1|AXP37045.1|1149828_1150518_+|molybdate-ABC-transporter-permease-subunit
MEISAINLSLSVAVSSMLWSLPLAIFVAWLLARKNFYGKSLITGVIHLPLVLPPVVIGYLLLVAMGRNGFIGKYLYQWFGLSFGFSWKGAVLSSAVVAFPLVVRAIRLSLENIDIKLEQAAQTLGASAWRVFFTITLPLSLPGVLAGLVLGFARSLGEFGATITFVSNIAGETQTIPLAMYSFIQTPAAEEQTARLCLFAIILSLISLLLSEWLSKRMQKKLGQGNVAN
>CP031684.1|AXP36437.1|1148890_1149655_+|molybdate-ABC-transporter-substrate-binding-protein
MKKLTKISTALLIAGLGFSFAASAKVTVFAAASMTDALQQVAKDYAKQNPKNEVVFSFASSSTLAKQVEEGAPADIFVSASNKWMKYLSEKDLTVKETEKVLVGNDLVLIAPAKSAVNSVDIAKGEWINALKDSYLSVGDPAHVPAGQYAAEALTKLNLWDKVQDRLARAKDVRGALALVERAEAPYGIVYSTDAKVSQQVKTVAVFPADSHKPVVYPVSIVKGHDNADSPDFLKYLESDAAKKVLVGYGFSAK
>CP031684.1|AXP36436.1|1147985_1148753_-|LysR-family-transcriptional-regulator
MKNTEILLTIKLQQALFIDPKRVRLLKEIQQCGSINQAAKNAKVSYKSAWDHLEAMNKISPRPLLERNTGGKNGGGTVLTTYAERLLQLYDLLERTQEHAFHILQDESVPLDSLLTATARFSLQSSARNQFFGRVAQQRIIDSRCVVDVNVQGLPTPLQVSITTKSSARLKLITEKEVMLMFKAPWVKISEQPLVNQPNQFSVNIKSLNEEEAILQFAESNIEFCATVHQPNQWQIGQQVWIHIDQEQIILATLG
>CP031684.1|AXP37044.1|1147090_1147876_+|glycosyltransferase
MSLYIKENPQFLRECFESLVAQTRQADEIVLVFDGAVTPELESVVTEFETKLPLKLVKLPQNRGLGKALNEGLLHCTYDWVFRMDTDDICVPDRFEKQVAFIEQHPESIIFGGQIAEFGKNVNDIVAYRNVPTSAQEIIKFTQKRCPFNHMTVAYQKSAVINCGGYEDLQEDYYLWIKLVAQGLYMANLPDILVYARVGNGMVSRRRGVNQAKAEWRLFKLKYRLGIQGLLSGLFTFALRFGSRLLPTSLLKKLYQTFLRK
>CP031684.1|AXP36435.1|1146186_1147071_+|glycosyltransferase-family-2-protein
MLSIIVPSYNRKAEVPALLESLTQQTSSNFEVIIVDDYSKERVVVEQRYSFPVTVIRNETNQGAAESRNIGARASKGDWLLFLDDDDRFMPEKSEKILQVIEQNPDINFIYHPAKCEMVNEGFSYVTQPIEPQEISTERILLANKIGGMPMVAIKKEMFLKIGGLSTALRSLEDYDFLLKLLQEPSFTPYKINEPLTYCTFHTKRSSVSTDTTNTQKAIDYIREHYVKTVEQARNFDINASYILAYPHIMNLSRKAAKYYFDIFKKTKSIKQFIITLVILISPKLAINLKRLGK
>CP031684.1|AXP36434.1|1145401_1146175_+|glycosyltransferase-family-25-protein
MLKKYLISLDKDIQRRKLFFSQKNTEDFQIFSAINTMQKDWDELASIFNIEQFKAHYFRNVTKGEIGCTLSHLSVYQKIIEDNDIAEDSYALVCEDDALFHSDFQQNLTALLSEKLEAEIILLGQSKINSFNDTDLEINYPTTFSFLCKKTGNVNYAFPYKSYFAGTVGYLIKKSAARRFIQQISQNKPFWLADDFLLFEQDFNIRNKVVRPLMVIENPVLISNLESVRGSLSNNLLKKLMKYPLKKIFAIKKNLAN
>CP031684.1|AXP36433.1|1144328_1145390_+|glycosyltransferase-family-4-protein
MKKIGFFIMNIESAGGTERVSINVANALAKQGYDVSFISIVGNKPFFQVDEKINIYAMNKLPYSLKKDYFSITKKLRELVKELQLDTLIVVDGAIMLFSALALVNLNIKHILWEHYSFNFTGNRLVRTLGKYLAVTTCDKIVTLTEAEKTLWQEKFKTNNIITIANPNTLLPKNKLAKWENKTILSVGHLFSYKGFDYLLKVWQVLAKKYPDWNLKIVGSGEEEENLKNLAKALDIEDSVNFTPRTNDVSFYYESSSIYCLPSQTEGLPLVVIEAMAFGLPIVAFNCSPGVKQLVEHKENGFLCEKNNIEEMVKGLDLLINNPELYQQMSDKSRLMSEDYGIEKIIEEWKGIL
>CP031684.1|AXP36441.1|1153835_1154543_-|electron-transport-complex-subunit-E
MTDLTEKNTALEEEKIESAVENQQKSIWKEIFAQGIWKNNPAVVQLLGLCPLLAVSSTATNALGLSLATMLVLTCTNTVISLFRQYIPKEIRIPIYVMIIATTVTAVQLLMNAYTYTLYQSLGIFIPLIVTNCIIIGRAEAFASKNSLLHSIWDGFSMGLGMALSLTILGALREIIGQGTIFEGIENLFGEQAKFLTHHIYHTDSSFLLFILPPGAFIGLGLLLAIKNRIDNVKK
>CP031684.1|AXP36442.1|1154544_1155168_-|electron-transport-complex-subunit-G
MGTVKITSRYGILLGFIALLCTIISAGIYFLTKDKIDAVIAAQQRELLLQVIPQDYFNNNLLESAVIPQDKNFVGIQKIYFAKKDGNISAYAYETTAPDGYSGDIRLLVGLDPKGEVLGVRVIEHHETPGLGDKIERRISNWILGFTNQSINEHNLSEWAVKKDGGKFDQFSGATITPRAVVNQTKRSALIMLNNQALLQQLSTQVK
>CP031684.1|AXP36443.1|1155167_1156244_-|electron-transport-complex-subunit-D
MFKMVSSPHTHSGKLTARIMLWVILAMMPAFFTQIYYFGFGVLLQSALAIGTAIIAEFIAIKLRGKKPLNYLSDFSVALTALILAMAIPPYAPYWVIIIGTLCAVLLGKQVYGGLGQNPFNPAMIGYVILLISFPLQMTTWMPPINLLQEPPTFSDAFSLIFSGLTTDGFTLSQLTHNIDGITQATPLDSAKIFYKSHNQLSDFYELIKLPIFMGNGTDFAQGWWQINVAFLAGGIFLILKRIIHWQIPVAMLVTFFCLATATAFTGFTHLSAISQLVSGAMMFGAFFIATDPVTASITPRGKIIFGALVGLFVYLIRYHGNYPDGVAFAILLSNICVPLIDHYTRPRVSGYPTKGRK
>CP031684.1|AXP36444.1|1156248_1158204_-|electron-transport-complex-subunit-RsxC
MADVLSRFNSGKLWDFKGGIHPPEMKSQSNSQPLRHLPLGTDFYIPLKQHLGTTGNLLIKEGDYVLKGQALTKGDGLRMLPVHAPTSGTIKSIKPYVATHPSGLDEPTIHLQSDGLDQWIERNPIDDFSTLSPEQLIHKIYQAGIAGLGGAVFPTAAKIQSAEQKVKLLIINGAECEPYITCDDRLMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGANDISVRVIPTKYPSGATKQLIYLLTGIEVPSGERSSSIGVLMQNVGTMFAIKRAVINDEPLIERVVTLTGNKIAEKGNYWVRLGTPISQILSDAGYQFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCLLAPDYLEYAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSHIPLIQYFRQEKAKIWQIKEKQKKSDEAKIRFEAKQARMEREEQERKARSQRAAQARREELAQTKGEDPVKAALERLKAKKANETESTQIKTLTSEKGEVLPDNTDLMAQRKARRLARQQAASQVENQEQQTQPTDAKKAVVAAAIARAKAKKLAQANSTSEAISNSQTAENEVEKTKSAVEKTQENSTALDPKKAAVAAAIARAKAKKLAKTQTTLENNQE
>CP031684.1|AXP36445.1|1158204_1158786_-|electron-transport-complex-subunit-B
MTFLFIVITLLALIFGAILGFASIKLKVEADPVVEKIDAILPQSQCGQCGYPGCKPYAEAICNGDEITKCIPGGQTTIVKIAEILGVDVPTMEGIEEPIEKVAFIDENMCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILMIPVKKNIDNWDWKFDAKLVIPVMNVDGSEKKLVVGE
>CP031684.1|AXP36446.1|1158873_1159452_-|electron-transport-complex-subunit-A
MTHYILLIIGTALINNFVLVKFLGLCPFMGVSKKIETAVGMGLATMFVLTVASLCAYLVDHYILIPLNATFLRTLVFILVIAVVVQFTEMAINKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNLAHNLTESVVYGFGASLGFSLVLVLFAALRERLVAADIPATFRGSAIALITAGLMSLAFMGFTGLVK
>CP031684.1|AXP36447.1|1159734_1160796_-|protease-SohB
MLNDILTGYGIFILEILTILLLILAIVGLIISYRQHNKSKVGELEIKDLSEEFNEQVRLLRDFNLSEEEQKQRTKAEKKAEKQNAKKRKEKLKKGDTLEDEKKACVYVLDFCGDISASETTALREEISAILNVAKPEDEVLLRLESPGGIVHNYGFAASQLSRLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVDVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCLDIDKIATGEHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKKFGRQAEESAINIIHRYSTKQSRDFMY
>CP031684.1|AXP36448.1|1160993_1161659_+|DUF2057-domain-containing-protein
MKLRAVVLGLATLCTSTATFAGMVSTSSNLEFLAIDGQKASKSLGKAKTFTVDDTQNHQVVVRLNEIVGSGSNQSLFESNPVIVTFQGNAEDLVISAPVIRNLDSGDKFNQMPNITVKTKSGNAISAKVDVLKQEGLFPSGNVLNDLAEYNASGAAASVSKFAATTVASSVAVAPAGNAKANKGKVVVQGENVAEQQLQYWFQQADKETQTRFLNWAKSHK
>CP031684.1|AXP36449.1|1161726_1163883_+|TIGR01666-family-membrane-protein
MNIRLNAKVISTIPVFIAVNIAAVGIWFFDISSQSMPLILGIIAGGLVDLDNRLTGRLKNVFFTLIAFSISSFIVQLHIGKPIQYIVLMTVLTFIFTMIGAVGQRYSTIAFGSLVVALYTTLTYIPEVNVWFINPVMILCGTLLYSVVTLIVYLFFPNRPVQESVAKAFCALGEYLDTKSCFFDPDEVAEIEKKHLNFAMKNANVVTAFNIVRTALFYRIRGQHRHPRTQRMLRYYFAAQDIHERANSTHFDYQQITEKLKNTDLIFRIQRLLELQAQSCKEITASLRENKPYHFNERVERSLLGTLHSFELYRTQHLNDQDELIDIQTLLDNLQSINWQLRQLAQEATDTEQLAQIHTEQITGLKNISAVIFSHFTFESPLFRHAVRLSIVVFLCCAIVEFFQFNLGYWILLTTVFVCQPNYSATKVRLRQRIIGTILGVVVGSLLPYLNPTLELKQGLVVLTSTLFFFFRSNNYSFSTFFITLQVLLSFDVMGFDTAAALMPRLLDTLLGAAISWFAVSYLWPDWKYLQLDKVSHQALRSDAVYLLHIISQLQFGKSDDLKYRIARRNAHQYAAALSTTLSNMNNEPVKYKAYLQKGFDLLKLNYSLLSYISALGAYRDRMKNLQQTAQFLSGFYPVAKKIIYTLEHIEEIPEAIFNQQQESIETHLKELEKQDMTAEERAVFSLPYQQLNLITQLLPQFYGYFKKEINCERVGAL
>CP031684.1|AXP36450.1|1163959_1165912_-|adhesin
MTKENLQNAPQNTTASLVESNNNQTSPQMLQQSPKPSLLRLEQYIEKKDYEFACRELMVILEKMDANFGGVHDIEFDAPAQLAYLPEKLLIYFATRLANAITTLFSDPELAISEEGALKMISLQRWLTLIFASSPYVNADHILNKYNINPDSEGGFHLATDNSSIAKFCIFYLPESNVNMSLDALWAGNQQLCASLCFALQSSRFIGTASAFHKRAVVLQWFPKKLAEIANLDELPANILHDVYMHCSYDLAKNKHDVKRPLNELVRKHILTQGWQDRYLYTLGKKDGKPVMMVLLEHFNSGHSIYRTHSTSMIAAREKFYLVGLGHEGVDKIGREVFDEFFEISSNNIMERLFFIRKQCETFQPAVFYMPSIGMDITTIFVSNTRLAPIQAVALGHPATTHSEFIDYVIVEDDYVGSEDCFSETLLRLPKDALPYVPSALAPQKVDYVLRENPEVVNIGIAATTMKLNPEFLLTLQEIRDKAKVKIHFHFALGQSTGLTHPYVKWFIESYLGDDATAHPHAPYHDYLAILRDCDMLLNPFPFGNTNGIIDMVTLGLIGVCKTGDEVHEHIDEGLFKRLGLPEWLIADTRETYIECALRLAENHQERLELRRYIIENNGLQKLFTGDPRPLGKVLLKKTNEWKRKHLSKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

689991 : 696433

Staphylococcus_phage(16.67%)

tRNA,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP36070.1\|689991_690717_-	carboxy-S-adenosyl-L-methionine synthase CmoA	A0A0N9SHZ9	Staphylococcus_phage	1.1e-25	32.0
AXP36071.1\|690769_691288_-	DUF1295 domain-containing protein	NA	NA	NA	NA
AXP36072.1\|691506_693273_+\|tRNA	aspartate--tRNA ligase	A0A1V0SFI4	Hokovirus	3.2e-07	30.3
AXP36073.1\|693334_694207_+	hypothetical protein	A0A2D1GNG5	Pseudomonas_phage	2.6e-10	26.5
AXP36074.1\|694409_694739_-	hypothetical protein	F6MIM2	Haemophilus_phage	7.9e-37	75.3
AXP36075.1\|695273_696095_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	7.9e-62	61.2
AXP36076.1\|696079_696433_-	helix-turn-helix domain-containing protein	A0A1B1P776	Bacillus_phage	3.7e-08	37.2

DBSCAN-SWA_2

1360400 : 1372439

Acinetobacter_phage(42.86%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP37050.1\|1360400_1361405_-	phosphate ABC transporter substrate-binding protein PstS	A0A222YW41	Synechococcus_phage	1.2e-51	40.1
AXP36589.1\|1361864_1362413_+	non-heme ferritin	NA	NA	NA	NA
AXP36590.1\|1362432_1362930_+	non-heme ferritin	NA	NA	NA	NA
AXP37051.1\|1363174_1363939_+	glycosyltransferase	M1HQG0	Paramecium_bursaria_Chlorella_virus	6.8e-15	29.6
AXP36591.1\|1364044_1365601_+	anthranilate synthase component I	A0A0B5J984	Pandoravirus	1.8e-22	33.2
AXP36592.1\|1365613_1366195_+	glutamine amidotransferase	A0A0P0IKJ1	Acinetobacter_phage	5.9e-35	39.9
AXP36593.1\|1366243_1366630_+	tautomerase family protein	NA	NA	NA	NA
AXP36594.1\|1366682_1367684_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	5.2e-47	35.3
AXP36595.1\|1367721_1369155_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	3.2e-34	38.3
AXP36596.1\|1369270_1369543_+	hydrogenase maturation factor HybG	NA	NA	NA	NA
AXP36597.1\|1369574_1372439_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	3.3e-147	37.2

DBSCAN-SWA_3

1381023 : 1387218

Mannheimia_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP36608.1\|1381023_1381206_+	hypothetical protein	A0A0M3LQV3	Mannheimia_phage	1.2e-05	45.5
AXP36609.1\|1381249_1381699_-	CopG family transcriptional regulator	NA	NA	NA	NA
AXP36610.1\|1381730_1381913_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
AXP36611.1\|1382069_1382681_-	hypothetical protein	D0UIL6	Aggregatibacter_phage	6.8e-42	45.7
AXP36612.1\|1382728_1383025_-	hypothetical protein	Q7Y5W3	Haemophilus_phage	5.8e-31	68.4
AXP36613.1\|1383045_1383252_-	XRE family transcriptional regulator	A0A0M3LSY2	Mannheimia_phage	1.9e-17	67.7
AXP36614.1\|1383382_1384039_+	LexA family transcriptional regulator	A0A0M3LSL8	Mannheimia_phage	5.5e-66	58.9
AXP36615.1\|1384106_1385036_+	hypothetical protein	NA	NA	NA	NA
AXP36616.1\|1385037_1385517_+	hypothetical protein	NA	NA	NA	NA
AXP36617.1\|1385993_1386164_-	DUF1508 domain-containing protein	NA	NA	NA	NA
AXP36618.1\|1386178_1386400_+	hypothetical protein	NA	NA	NA	NA
AXP36619.1\|1386567_1386966_+	hypothetical protein	A0A0M3LPU3	Mannheimia_phage	5.3e-11	48.6
AXP36620.1\|1386951_1387218_-	hypothetical protein	A0A0N9STP5	Staphylococcus_phage	5.6e-09	49.2

DBSCAN-SWA_4

1631655 : 1640173

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXP36856.1\|1631655_1632339_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.3e-54	50.7
AXP36857.1\|1632331_1632757_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	7.8e-21	42.7
AXP36858.1\|1632757_1633393_+	7-carboxy-7-deazaguanine synthase	S4TZT1	uncultured_phage	8.7e-16	30.3
AXP37058.1\|1633791_1634025_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA
AXP36859.1\|1634008_1636192_+	DNA helicase II	A7KV33	Bacillus_phage	1.8e-116	37.6
AXP36860.1\|1636311_1637283_+	ABC transporter permease subunit	NA	NA	NA	NA
AXP36861.1\|1637297_1638185_+	dipeptide ABC transporter permease DppC	NA	NA	NA	NA
AXP36862.1\|1638194_1639187_+	dipeptide ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.7e-14	30.8
AXP36863.1\|1639189_1640173_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-20	33.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031684

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection