CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP031568	Enterobacter hormaechei strain S13 plasmid pSHV12-1301491, complete sequence	0 crisprs	NA	0	3
CP031567	Enterobacter hormaechei strain S13 plasmid pIncHI2-1301491, complete sequence	0 crisprs	NA	0	0
CP031570	Enterobacter hormaechei strain S13 plasmid pIncAC2-1301491, complete sequence	0 crisprs	DEDDh	0	1
CP031569	Enterobacter hormaechei strain S13 plasmid pIncFIB-1301491, complete sequence	1 crisprs	csa3	1	1
CP031565	Enterobacter hormaechei strain S13 chromosome, complete genome	1 crisprs	cas3,cas14j,csa3,WYL,DEDDh,RT,DinG	1	11
CP031566	Enterobacter hormaechei strain S13 plasmid pIncLM-1301491, complete sequence	0 crisprs	NA	0	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031569_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031569_1

7767-7901

Orphan

Consensus_repeat	Method
TGGAATATCGATTCCACACGCCGGATTTAACTGGGACCACGGTCCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031569_1

>merge|CP031569|1|7767-7901|CRISPRCasFinder
TGGAATATCGATTCCACACGCCGGATTTAACTGGGACCACGGTCCCACCTCCTACTTGCGTGTCAGAACTCATCCTTCAACCCCGCCTGGAATATCGATTCCACACGCCGGATTTAACTGGGACCATGGTCCCAC

>CP031569|1|1|7767-7901|CRISPRCasFinder
TGGAATATCGATTCCACACGCCGGATTTAACTGGGACCACGGTCCCAC	CTCCTACTTGCGTGTCAGAACTCATCCTTCAACCCCGCC
TGGAATATCGATTCCACACGCCGGATTTAACTGGGACCATGGTCCCAC

Protein	Signature genes	Signature genes Name	Protein_function
CP031569.1\|AXO47978.1\|6462_7428_+\|ParB/RepB/Spo0J-family-plasmid-partition-protein	unknown	unknown	gnl\|CDD\|184254
CP031569.1\|AXO47982.1\|10985_11648_+\|Mediator-of-plasmid-stability	unknown	unknown	gnl\|CDD\|119304
CP031569.1\|AXO47984.1\|11943_12147_+\|hypothetical-protein	unknown	unknown	unknown
CP031569.1\|AXO47986.1\|12521_12989_+\|hypothetical-protein	unknown	unknown	unknown
CP031569.1\|AXO47973.1\|1097_1388_+\|hypothetical-protein	unknown	unknown	unknown
CP031569.1\|AXO47985.1\|12164_12365_-\|hypothetical-protein	unknown	unknown	unknown
CP031569.1\|AXO47988.1\|14201_14423_+\|hypothetical-protein	unknown	unknown	unknown
CP031569.1\|AXO47976.1\|3545_4556_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
CP031569.1\|AXO47987.1\|13512_14205_+\|DNA-methylase	unknown	unknown	gnl\|CDD\|184255
CP031569.1\|AXO47974.1\|1518_2049_+\|hypothetical-protein	unknown	unknown	unknown
CP031569.1\|AXO47975.1\|2067_2844_+\|phage-integrase-family-protein	unknown	unknown	gnl\|CDD\|334163
CP031569.1\|AXO47981.1\|10011_10983_+\|StbA-family-protein	unknown	unknown	gnl\|CDD\|310773
CP031569.1\|AXO47980.1\|9348_9780_-\|peptidase	unknown	unknown	gnl\|CDD\|182350
CP031569.1\|AXO47983.1\|11651_11915_+\|hypothetical-protein	unknown	unknown	unknown
CP031569.1\|AXO47972.1\|351_555_-\|hypothetical-protein	unknown	unknown	unknown
CP031569.1\|AXO47977.1\|5296_6463_+\|plasmid-partitioning-protein-SopA	unknown	unknown	gnl\|CDD\|184261
CP031569.1\|AXO47979.1\|8077_9349_-\|translesion-error-prone-DNA-polymerase-V-subunit-UmuC	unknown	unknown	gnl\|CDD\|179607

Protein	Function_ID	Function_description	E-value
CP031569.1\|AXO47978.1\|6462_7428_+\|ParB/RepB/Spo0J-family-plasmid-partition-protein	gnl\|CDD\|184254	PRK13698, PRK13698, ParB/RepB/Spo0J family plasmid partition protein.	0
CP031569.1\|AXO47982.1\|10985_11648_+\|Mediator-of-plasmid-stability	gnl\|CDD\|119304	pfam10784, Plasmid_stab_B, Plasmid stability protein. This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterized.	4.71088e-22
CP031569.1\|AXO47979.1\|8077_9349_-\|translesion-error-prone-DNA-polymerase-V-subunit-UmuC	gnl\|CDD\|179607	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC.	0
CP031569.1\|AXO47981.1\|10011_10983_+\|StbA-family-protein	gnl\|CDD\|310773	pfam06406, StbA, StbA protein. This family consists of several bacterial StbA plasmid stability proteins.	6.20247e-125
CP031569.1\|AXO47980.1\|9348_9780_-\|peptidase	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	1.2172e-56
CP031569.1\|AXO47976.1\|3545_4556_-\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	0.000218634
CP031569.1\|AXO47987.1\|13512_14205_+\|DNA-methylase	gnl\|CDD\|184255	PRK13699, PRK13699, putative methylase; Provisional.	9.7575e-160
CP031569.1\|AXO47977.1\|5296_6463_+\|plasmid-partitioning-protein-SopA	gnl\|CDD\|184261	PRK13705, PRK13705, plasmid-partitioning protein SopA; Provisional.	0
CP031569.1\|AXO47975.1\|2067_2844_+\|phage-integrase-family-protein	gnl\|CDD\|334163	pfam00589, Phage_integrase, Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.	9.41107e-39

>CP031569.1|AXO47978.1|6462_7428_+|ParB/RepB/Spo0J-family-plasmid-partition-protein
MKRAPVIPKHTVKDIRPETEPSAAPAAPMVDSLIARVGAMARGNTILLPVCGREVKFILEAIPGESVETASRVWSGNERDQELLTEDALDDLIPSFMLSGQQTPAFGRRVEGVIEIADGSRRRKAAILTSSDYRVLVGDLDDEQMMALSRLGNDYRPVSAYERGNRYAQRLENDFNGNISALAEAENISRKIITRCINTAHLPKSVVALFTHPGELSARSGETLYKAFSGKEALLLQRTQQLHEQKKAGVIFESEEVIGLLTDVLKEPSGKKVNLNTRHQFVPGATALYKGDKVIFNLDKSRLPAECIEKIESILRDLQKV
>CP031569.1|AXO47977.1|5296_6463_+|plasmid-partitioning-protein-SopA
MGLMETLDQCITAGHEMTKAIAIAQFNDDSPEARKITRRWRVGEAADLIGVSSQAIRDAEKAGRLPHPDMEMRGRVEQRVGYTIEQINHMRDVFGTRLRRPDDSVPPVIAVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGERDDAAYAVKATCWPGLDIIPSCLALHRIETELMGRFDNGKLPTEPHMMLRLAIETVAHDYDVIVIDSAPNLGIGTINVVCAADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLQGFEPDVRILLTKYSNNNGSQSPWMEEQIRDAWGSMVLKNVVRETDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRLIKPRWEIR
>CP031569.1|AXO47976.1|3545_4556_-|replication-initiation-protein
MAMENNELHLNLQEVNKTTGEVVKLDVNSASTVQPVALMRLGLFVPTLKSTSRSKTNRKNVTDATEELVQLSIARSEGYTDVRITGSRLDMDTDFKVWLGIIRSMYDFGVKDDTLKLSFVEFVKMCGFDSRRSNKKMRDRISNSLFKLASVTLKFQSETKGWTTHLVQSAYYDITADVVEIRAEPKLFELYQMDRRVLLRLKAIDALQRKESAQALYTYIESLPQNPAPISMKRMRDRLNLTSNLYTQNHTVRKAMAQLKDIGYLDYTEFKRGRATYFSVHYRNPKLISSKVVVPREPEEEVPEQNYDEVIKALKAAGIDPQKLAKALASVKPGND
>CP031569.1|AXO47975.1|2067_2844_+|phage-integrase-family-protein
MMPALPGHSGAFSSAQLPVAIDYPAALALRQMALVQDELPKYLLAPEVSALLHYVPDLHRKMLLTTLWNTGARINEALALTRSDFSLAPPYPFVQLATLKQRVEKAARTAGRAPAGSQPHRNVPLSDPQYARQLEMMVATLKIPLERRNKRTGRTEKVRIWEITDRTVRTWLGEAVEAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDVAARHRVQFSMAEADAVAMLKKR
>CP031569.1|AXO47974.1|1518_2049_+|hypothetical-protein
MCKLTGFIMGLTILLGVTARDAGAATLSEMRMVNASQKPGMVIICSRTSEIPQKGESPVRIESLLRGVVLQNDGDRMMFDVTYTQRNAEESIPFRTEKYRLTTELEATRQKMAIDPETIELSLPRARGLEETFLAGMKASPVSFEDYTNYRVKSATEYLILPGPASPDAPVMHCTL
>CP031569.1|AXO47973.1|1097_1388_+|hypothetical-protein
MNMKITLSVLFEALIILGHDRVWMEESEFEHIYGYGCYREIHTWDDRTVAWWDDADDTWYLSTEVDVITPFLGPLPKKEGELSEEKCFQLMTLGRY
>CP031569.1|AXO47972.1|351_555_-|hypothetical-protein
MTVFLILTAIAYGIVSTGGYILLVDKGYQGWTLFWKNYDDLPHIYRSRWRYQRRFILRRIWKRLFNR
>CP031569.1|AXO47979.1|8077_9349_-|translesion-error-prone-DNA-polymerase-V-subunit-UmuC
MFALADVNSFYASCERVFRPDLKGKPVVVLSNNDGCVIARSAEAKPWIKMGTPWFQMKNETYPEKIYAFSSNYELYASMSARVMSCLEELAPRVEQYSIDEMFLDLTGVEHCMDLEDFGRQLRQHVYDCTRLTIGVGAGPTKTLAKSAQWASKEWKQFRGVLALTRGNPQRTRKLLSLQPVEEIWGVGNRIARKLNVLGIRTALDLALTNPAFIRKNFSVVLERTVRELNGESCMSLEEAPPTKQQIVCSRSFGEKITEYDSLRQAVCQYAERASEKLRKERQYCRHISVFIKTSPFAVKEPYYGNVATEKLLTPTQDTRDIIAAATTALERIWKDGHLYAKAGVMLNDFTGSGVSQLQLFDERPPRPHSSELMKVLDGINHSGLGQIWFAGRGIAPSWQMKRDMLSPAYTTRWKDIPVARIR
>CP031569.1|AXO47980.1|9348_9780_-|peptidase
MKLQLFSTGKALPPQAHPLFADLASCGFPSPAADYVESDLDLHDYCIRHPSATYYLRASGDSMSDGSLYNGDLLVVDSAEKPRHGDIVVASVQGEFTVKRLLLTPRLTLQPMNAAWPPIYPDPDDLDIFGVVTHIIHRPREMY
>CP031569.1|AXO47981.1|10011_10983_+|StbA-family-protein
MNIYCDDGSTNVKLAWFEGNELQTRVSANSFRHGWKVAEFSAATFNYQVGTLKYTWDSVSRDAIPTTNVEYQYGDLNLLAVHHALLNSGLEPQPVSLTVTLPLSEYYDGDCQRNEENIRRKRENLMRELVLNKGRAFTVTDVKVMPESLPAAFSRLAELKPGPAETTLIIDLGGTTLDAGVIVGQFDDISAVHGNPSVGVSQVTRAAAGALRAADSETSALIADTVIRNRNDRQYLQRVINDAGKIDDVLNKITEAITSLGARVTSELTVFRSVNRVFLVGGGASLIEEAIRQAWPLAPDRIEVIGDPQLALAREIALYNKED
>CP031569.1|AXO47982.1|10985_11648_+|Mediator-of-plasmid-stability
MPDGQYSFYLHSDDRTDITAMATISTISQPLRGDFIRTAATAGAVMYQTDARLPALIPVFFDGHLSAIRLCAVMALVSGTWSSLSGLPDEPDGGVAALAMSPETEYQRRRYTLTLQDDRSSERVERVLTGVSSRLRGELLRNLIITGLALHTTAPELPRLLASMPVPPGTVSELQVLVQQMAGTADVSMAAVPEKPAEPAAPVSAEATSIKKNMRRAFGD
>CP031569.1|AXO47983.1|11651_11915_+|hypothetical-protein
MSVIKQKAVQCIHNFLRARNVPESQWPERVKKTGRGMILAGVAVVVPGVLVDNISLPVTIAMQVCYASLIGLGVLLAFDKKKPEGRG
>CP031569.1|AXO47984.1|11943_12147_+|hypothetical-protein
MLLEELTGDERTLVVVALQALFRERLSASNAVFTVCSLSGKEQPPEDIFGLREVEDALRRIGAAPAR
>CP031569.1|AXO47985.1|12164_12365_-|hypothetical-protein
MNPCDRSGRVSVKARRVIFYGRCKAEEKFHIKLKCDLHHKTIHYNRRKIKRLVLTAGMRCHPAVFF
>CP031569.1|AXO47986.1|12521_12989_+|hypothetical-protein
MFRLTCIELDNGEFAVYINHHYLGSEDASGERLSLGEVLEQLSLLPGVELQTLLEPVPECDDWCWNDIADRVLPSRPACRDDVTVAGLIARLKQYPPDALCMGTFWLEDDFLSLDGSLSEEEIAEAMRICDHSHDAGIGFNWDTLQFAIDHVKGR
>CP031569.1|AXO47987.1|13512_14205_+|DNA-methylase
MSRFILGDCVQVMSRFPARAVDFILTDPPYLVGYKDRTGRTLAGDNSSEWLQPACHEMYRVLKNDSLMVSFYAWNRADLFLNAWKTAGFRVVGHIVFAKSYASKSTFVGYTHESAYLLAKGRPQTPDRPIPDVIPWKYTGNRHHPTEKPVQSLRPLIESLTRPGAIVLDPFAGSGSTCVAAAEASRRYIGIEMLEQYHAAGVRRLAQVERARRMPAANDGAFYPDYPEAA
>CP031569.1|AXO47988.1|14201_14423_+|hypothetical-protein
MNYPGLENLRADVAALSNAMCDVRMLLNRLESQHRHDAATLTERMAAQTLRRINTLLLEAYREALVLDETFQD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_CP035636	Enterobacter cloacae strain EN3600 plasmid unnamed4, complete sequence	100226-100264	0	1.0
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_CP017182	Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence	1315-1353	0	1.0
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_CP017182	Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence	1402-1440	0	1.0
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_CP031569	Enterobacter hormaechei strain 2013_1a plasmid pIncFIB-1301491, complete sequence	7815-7853	0	1.0
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_CP050011	Citrobacter sp. Y3 plasmid unnamed2, complete sequence	27572-27610	0	1.0
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_CP019840	Enterobacter roggenkampii strain R11 plasmid pASM1, complete sequence	70340-70378	0	1.0
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_CP022149	Enterobacter roggenkampii strain 704SK10 plasmid p704SK10_1, complete sequence	50338-50376	0	1.0
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_CP009855	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence	14593-14631	0	1.0
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_CP008907	Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence	83191-83229	0	1.0
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_CP026851	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1	65584-65622	0	1.0
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_LT991956	Enterobacter hormaechei subsp. steigerwaltii isolate C309 plasmid pC309-p2	52487-52525	0	1.0
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_CP029719	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0154 plasmid unnamed1, complete sequence	1341-1379	0	1.0
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_CP012428	Klebsiella pneumoniae strain KP5 plasmid pSg1-2, complete sequence	20127-20165	1	0.974
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NC_014107	Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence	48095-48133	1	0.974
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_CP046273	Enterobacter hormaechei strain E70 plasmid pE70-sul2, complete sequence	40032-40070	1	0.974
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_CP012169	Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-210.894kb, complete sequence	40032-40070	1	0.974
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_CP042541	Enterobacter hormaechei strain C4 plasmid pC4_001, complete sequence	40032-40070	1	0.974
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_CP031723	Enterobacter hormaechei strain WCHEH020038 plasmid p2_020038, complete sequence	50311-50349	1	0.974
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_CP042567	Enterobacter hormaechei strain C44 plasmid pC44_001, complete sequence	40032-40070	1	0.974
CP031569_1	1.1\|7815\|39\|CP031569\|CRISPRCasFinder	7815-7853	39	NZ_CP039454	Enterobacter bugandensis strain 220 plasmid pSurvcare220, complete sequence	72766-72804	2	0.949

1. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_CP035636 (Enterobacter cloacae strain EN3600 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

2. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_CP017182 (Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

3. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_CP017182 (Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

4. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_CP031569 (Enterobacter hormaechei strain 2013_1a plasmid pIncFIB-1301491, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

5. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_CP050011 (Citrobacter sp. Y3 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

6. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_CP019840 (Enterobacter roggenkampii strain R11 plasmid pASM1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

7. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_CP022149 (Enterobacter roggenkampii strain 704SK10 plasmid p704SK10_1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

8. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_CP009855 (UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

9. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_CP008907 (Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

10. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_CP026851 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

11. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_LT991956 (Enterobacter hormaechei subsp. steigerwaltii isolate C309 plasmid pC309-p2) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

12. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_CP029719 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0154 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

13. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_CP012428 (Klebsiella pneumoniae strain KP5 plasmid pSg1-2, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

14. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NC_014107 (Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

15. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_CP046273 (Enterobacter hormaechei strain E70 plasmid pE70-sul2, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

16. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_CP012169 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-210.894kb, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

17. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_CP042541 (Enterobacter hormaechei strain C4 plasmid pC4_001, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

18. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_CP031723 (Enterobacter hormaechei strain WCHEH020038 plasmid p2_020038, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

19. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_CP042567 (Enterobacter hormaechei strain C44 plasmid pC44_001, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

20. spacer 1.1|7815|39|CP031569|CRISPRCasFinder matches to NZ_CP039454 (Enterobacter bugandensis strain 220 plasmid pSurvcare220, complete sequence) position: , mismatch: 2, identity: 0.949

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtttcagaactcatccgtcaaccccgcc	Protospacer
************* ************* ***********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2067 : 10983

Macacine_betaherpesvirus(42.86%)

integrase

attL 1163:1175|attR 6235:6247

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1163:1175	attL	NA	NA	NA	NA
AXO47975.1\|2067_2844_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	7.0e-52	91.2
AXO47976.1\|3545_4556_-	replication initiation protein	J9Q7H0	Salmonella_phage	6.3e-85	55.2
AXO47977.1\|5296_6463_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	5.5e-218	94.3
6235:6247	attR	NA	NA	NA	NA
AXO47978.1\|6462_7428_+	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	9.8e-136	76.9
AXO47979.1\|8077_9349_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	2.3e-153	62.7
AXO47980.1\|9348_9780_-	peptidase	A0A1W6JNS2	Morganella_phage	1.0e-28	53.3
AXO47981.1\|10011_10983_+	StbA family protein	A0A222YXF2	Escherichia_phage	1.1e-73	47.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP031565

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP031565_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031565_1

4554745-4554906

Orphan

Consensus_repeat	Method
TCTCCCGTAGGCCCGGTAAGCGCAGCGCCACCGGGCAACGGTTTTAACCGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031565_1

>merge|CP031565|1|4554745-4554906|CRISPRCasFinder
TCTCCCGTAGGCCCGGTAAGCGCAGCGCCACCGGGCAACGGTTTTAACCGGAGATACGATAAAAAGCCGGGTGGCGGCTACGCCTTACCCGGCCTACATGTTCTACATATTCTCCCGTAGGCCCGGTAAGCGCAGCGCCACCGGGCAACGGTTTTAGCCGGA

>CP031565|1|1|4554745-4554906|CRISPRCasFinder
TCTCCCGTAGGCCCGGTAAGCGCAGCGCCACCGGGCAACGGTTTTAACCGGA	GATACGATAAAAAGCCGGGTGGCGGCTACGCCTTACCCGGCCTACATGTTCTACATAT
TCTCCCGTAGGCCCGGTAAGCGCAGCGCCACCGGGCAACGGTTTTAGCCGGA

Protein	Signature genes	Signature genes Name	Protein_function
CP031565.1\|AXO47300.1\|4564164_4564599_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|377396
CP031565.1\|AXO47289.1\|4546186_4547254_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|183212
CP031565.1\|AXO47291.1\|4547913_4549353_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|182233
CP031565.1\|AXO47301.1\|4564603_4565062_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|377396
CP031565.1\|AXO47290.1\|4547295_4547826_-\|cytochrome-b561	unknown	unknown	gnl\|CDD\|236921
CP031565.1\|AXO47292.1\|4549551_4550346_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|224351
CP031565.1\|AXO47303.1\|4565754_4566063_-\|DUF2878-family-protein	unknown	unknown	gnl\|CDD\|378555
CP031565.1\|AXO47297.1\|4560393_4560933_-\|DUF2058-domain-containing-protein	unknown	unknown	gnl\|CDD\|225664
CP031565.1\|AXO47286.1\|4525233_4543239_-\|type-I-secretion-C-terminal-target-domain-containing-protein	unknown	unknown	gnl\|CDD\|380150
CP031565.1\|AXO47298.1\|4562101_4563130_+\|methionine-synthase	unknown	unknown	gnl\|CDD\|181659
CP031565.1\|AXO47287.1\|4543360_4544698_-\|type-I-secretion-system-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
CP031565.1\|AXO47285.1\|4522891_4525057_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|274550
CP031565.1\|AXO47299.1\|4563133_4564066_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
CP031565.1\|AXO47295.1\|4559003_4559609_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|234675
CP031565.1\|AXO47293.1\|4553313_4554693_+\|transporter	unknown	unknown	gnl\|CDD\|273830
CP031565.1\|AXO47596.1\|4561101_4562076_+\|DUF1852-domain-containing-protein	unknown	unknown	gnl\|CDD\|370181
CP031565.1\|AXO47302.1\|4565058_4565592_-\|DUF3833-domain-containing-protein	unknown	unknown	gnl\|CDD\|378992
CP031565.1\|AXO47296.1\|4559699_4560386_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
CP031565.1\|AXO47595.1\|4550566_4552213_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
CP031565.1\|AXO47288.1\|4545429_4546173_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268

Protein	Function_ID	Function_description	E-value
CP031565.1\|AXO47300.1\|4564164_4564599_+\|DMT-family-transporter	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	2.22711e-23
CP031565.1\|AXO47289.1\|4546186_4547254_+\|oxidoreductase	gnl\|CDD\|183212	PRK11579, PRK11579, putative oxidoreductase; Provisional.	8.50287e-147
CP031565.1\|AXO47291.1\|4547913_4549353_-\|aldehyde-dehydrogenase	gnl\|CDD\|182233	PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.	0
CP031565.1\|AXO47301.1\|4564603_4565062_+\|DMT-family-transporter	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	8.57564e-30
CP031565.1\|AXO47290.1\|4547295_4547826_-\|cytochrome-b561	gnl\|CDD\|236921	PRK11513, PRK11513, cytochrome b561; Provisional.	8.3857e-118
CP031565.1\|AXO47292.1\|4549551_4550346_-\|YdcF-family-protein	gnl\|CDD\|224351	COG1434, COG1434, Uncharacterized conserved protein [Function unknown].	1.19752e-19
CP031565.1\|AXO47303.1\|4565754_4566063_-\|DUF2878-family-protein	gnl\|CDD\|378555	pfam11086, DUF2878, Protein of unknown function (DUF2878). This bacterial family of proteins has no known function. Some members annotate the proteins as the permease component of a Mn2+/Zn2+ transport system however this cannot be confirmed.	3.97005e-11
CP031565.1\|AXO47297.1\|4560393_4560933_-\|DUF2058-domain-containing-protein	gnl\|CDD\|225664	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown].	1.03752e-76
CP031565.1\|AXO47286.1\|4525233_4543239_-\|type-I-secretion-C-terminal-target-domain-containing-protein	gnl\|CDD\|380150	NF012196, Ig_like_ice, Ig-like domain-containing protein. This variant form of the Ig-like domain occurs as a repeat in a number of large adhesins, including a 1.5-MDa ice-binding adhesin, the Marinomonas primoryensis antifreeze protein.	8.12488e-14
CP031565.1\|AXO47298.1\|4562101_4563130_+\|methionine-synthase	gnl\|CDD\|181659	PRK09121, PRK09121, methionine synthase.	0
CP031565.1\|AXO47287.1\|4543360_4544698_-\|type-I-secretion-system-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	2.83442e-87
CP031565.1\|AXO47285.1\|4522891_4525057_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|274550	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
CP031565.1\|AXO47299.1\|4563133_4564066_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.17838e-73
CP031565.1\|AXO47295.1\|4559003_4559609_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|234675	PRK00170, PRK00170, azoreductase; Reviewed.	1.54157e-130
CP031565.1\|AXO47293.1\|4553313_4554693_+\|transporter	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	7.96391e-93
CP031565.1\|AXO47596.1\|4561101_4562076_+\|DUF1852-domain-containing-protein	gnl\|CDD\|370181	pfam08908, DUF1852, Domain of unknown function (DUF1852). This family of proteins are functionally uncharacterized.	0
CP031565.1\|AXO47302.1\|4565058_4565592_-\|DUF3833-domain-containing-protein	gnl\|CDD\|378992	pfam12915, DUF3833, Protein of unknown function (DUF3833). This is a family of uncharacterized proteins found in Proteobacteria.	3.12354e-92
CP031565.1\|AXO47296.1\|4559699_4560386_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	5.26425e-68
CP031565.1\|AXO47595.1\|4550566_4552213_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	9.89171e-23
CP031565.1\|AXO47288.1\|4545429_4546173_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.67687e-73

>CP031565.1|AXO47293.1|4553313_4554693_+|transporter
MTLRPIAGLLIMTILAGCQSVDVESAKSSLHIPAQWRATSGPASPTEQLWWRNFHDSNLNRYVDQALKNNSDVLIARERINEYQARVYAADGSLFPSLDAGVTGTRARSQSAATGLPVYGTLYKGSLTASYDVDIWGVNRSTSRAAEASLEAQKAAAAAADLTVASSVASGYVTLLSLDEQLRVTRSTLKSREEAFNLAKRQFETGYSSRLELMQSDSELRATRAQVPLLQHQIAQQENALSLLLGSNPGDVARGESFDALTPLKLPFQLPSTLLNRRPDIVQAERQLIAADATLAASRASLLPSINLTATGSVQDRTLSGLLDNPLQLWSVGGSILAPLLNRQALNAQVDISQSQRNQALYSYEKTVRNAFAEVNDSLDAITRYQEQLTELLAQQTVAQETLRIAQNRYRNGYSSYLDELDAQRTLFSVQTSVVQVKNNLLLAQIDLYKALGGGWVSA
>CP031565.1|AXO47595.1|4550566_4552213_+|MFS-transporter
MPQRDPYAPREWQPHEKPALLGSPSTPEHPTSKRIAYGVVGLLVCLTGALGNAVVTANLQNLQGTFGAWSTEIAWLPAVYVMTNVSINLLLVKFRQQYGLRAFTEGFLVLYVLVTFFHLFVNDLSSALMVRAAHGMVAAALSSLGIYYQIQAWPAKHRLKALTIGITGSSLAIPLARLFSTELLQLDEWRGLYFFELGLALISLACVMALKLPPGDRRKVFEKKDFITFFLLAPGMALLCAVLSLGRLDWWFEAPWIGWALALSLVLIVSAIVFEHNRNNPLLNTRWLSSGSIVRLGLIMLLIRIVLAEQNTGVIGWLQYVGLQNEQMTHLAWAIFAGIVCGIVTSCLTIKPTKLAWPIITSLALMIVASLLDSQSNNLTRPDQLIFSQFLLGFGSAFFLAPAMLAAIGGVIADPRNLVSFSVMFGMSQNLGGLLGSAILGTFQTWREKYHSSLLADQLTTLNPLVNERIQLYTQMYKSLIGDSSLLGTQAITQLQTVTALEANILAYNDTYLLTASIATATLVWILWRLLRLRITARMALKNATGNK
>CP031565.1|AXO47292.1|4549551_4550346_-|YdcF-family-protein
MTMALFPCLPGTTLDAVNTVGAWLAQDDYQDNQPVDLVILAGNAVIPAIDAACKIAAEQGIPLIISGGIGHSTTFLYAAIAKHPRYNRIPTTGRAEAAILADIAREFWNIPAEHLHVEDQSTNCGENARFSRALMKQAGLNAARVLVVQDPTMQRRTMATFARVCRDEAASPAWVSHPGLTPVLQNSDDGLVFSGPVEGLWPVERYLSLVLGEFPRLRDDINGYGPAGRDFIAHVDIPADVDAAWQILRNDVILTDALVSRSLL
>CP031565.1|AXO47291.1|4547913_4549353_-|aldehyde-dehydrogenase
MTVPVQHPMYIDGQFVAWQGDAWIDVINPATEEVISRIPDGSAEDARKAIDAADRAQAGWEALPAIERASWLRKISAGIRERVSEISALIVAEGGKIQQLAEVEVNFTADYIDYMAEWARRYEGEIIQSDRPGENILVFKRALGVTTGILPWNFPFFLIARKLAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPKGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVGAGEKIMAAAAKNITKVGLELGGKAPAIVMDDADLELAVKAIVDSRVINTGQVCNCAERVYVQKGIYDRFVNRLGEAMKAVQFGNPAERTDIAMGPLINAAALERVEQKVARAVQEGAKVVLGGKAAEGKGYFYPPTLLLDVRQDMAIMHEETFGPVLPVVAFDTLEEALNMANDSDYGLTSSVYTQDLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLNEYLQTQVVYLQS
>CP031565.1|AXO47290.1|4547295_4547826_-|cytochrome-b561
MRTKYTGLQISIHWLVFLLVIMAYCAMEFRGWFPRTDRPLINMIHVSCGISILVLMVARLLIRLKFPAPPIQPKPKAMITGLSHLGHLVIYLLFIALPLIGMVMMYNRGNDWFAFGLTMPHAAEGNFDLVDTLKAWHVTLANLGYFVIGLHAFAALMHHYFWKDNTLLRMMPKKRQ
>CP031565.1|AXO47289.1|4546186_4547254_+|oxidoreductase
MNKVKTMNIALIGYGFVGKTFHAPLIQSVEGLKLAVVSSRDEEKVKRDLPDVLVVATPEEAIQHPDIDLVVIASPNATHAPLATLALNAGKHVVVDKPFTLDMQEARDLIALAQEKQRLLSVFHNRRWDSDFLGIKQVIEQGRIGKVKHFESHIDRFRPEVRVRWREQNVPGSGLWFDLGPHMIDQTLQLFGLPQSVQGNIATLRDGAEINDWAHVVLNYPEHKVVLHCSMLVAGGVARFTVHGDKASVVKAHIDQQEAQLLAGVVPGSESWGEDSDAMVLFNAQGEASAIPAPKGDQRQYYINVRDALNGKIDNPVHPVEALAVMAVLEAAVKSSETGSTQELDLTAQERAQLQ
>CP031565.1|AXO47288.1|4545429_4546173_+|DeoR/GlpR-transcriptional-regulator
MHKTARQKYVLDIITEQGQASITELAERLQVSADTIRRDLTDLEKQGLAQKNHGGAIALNLSTMTRVSRNSLLPEIKQRLGKQVAQCVPAGSTLFLDAGSTLLAVASFLQGPLTIITPSLDIAQQVSDREDIDLILLGGKWDQKQRLFAGSATLSLLSRYRADIAILGACAIHAELGLSASQEADAEVKRAMLAASQAHWVVADHLKLNQCEPYLVSGLSEIHQLFLDRPWAELGDHSALQVTVGAH
>CP031565.1|AXO47287.1|4543360_4544698_-|type-I-secretion-system-outer-membrane-protein
MKMKCNNRLLRLSVSLPLFSLVVTAANANNGQAGISPVAAMTMKESILFALDRDPSVSQQAAQLGIGQAQIDEARSGWMPQIALNGSTGHSQTTDSSGSLRNSAAWGLSLTQLVYDFGKTNNSISQSSAQRDSYRYQLMSTMSAVAEKTALSYVEVKRYSDLLQAAKENVQALKNVEQLAKLRADAGVSSTSDELQTRTRIAGMQATVEQYNASLNSARARLAVLTGIQAERYSPVPGGLAVEPDSLNRIDYSLIPTVMAAQNMERSAQYGVETARSQHWPTLSLKGGRTRYESDNRAYWDDQIQLNIDAPLYQGGAVSARVRQAEGARAMASSQVDQARFDVLQKASVAQADWTGARGRMEAGKRQLENALRARDVYKNEYTLSKRSINDLLSVEQDVWSATSAKIMAEYDGWSAAINYASAVDNLLPLIGIEKNAAAKLPDLS
>CP031565.1|AXO47286.1|4525233_4543239_-|type-I-secretion-C-terminal-target-domain-containing-protein
MSTAKVVDVIIRKTAEKTKLTGEGNLSVSISSPSVIEIQGSAQDVVRYVRQGNDLLIYMKDGSVIRCNNYFVEDTETHNHSELVFNDNQALTHISFADAGEASGVAATELTAQAAPISSIEPFLEQGSVLSDAPWGWIAGAALGGGAIGALLAHGGDGETKTRVIDNTKEVESATPTFLLTDNAGDKQGVLSAKAVTDDNTPTFSGTGQPGATIQVKDGSGSTIASTMVAKDGTWTVTLPTQADGEHTWSVVQIDGSKTTSAGSITVTVSTADASVTLATTAGDNVINASEQSAGFTLSGTSKNLAQGTALSVTLNGKTYSAEVGANGAWSVKVPAADAQALGDGTWTVNVSGKDAAGNTVSGSQTIGVDTASPVISVDTIAQDNIINAAEHNQPLTLTGKTDAEAGQIVTVTLNGKNHTATVGSDGTWSVTLPASEVQALANGEHTLTVNVSDKAGNGSSVTADFTVDTAAPVVTINTVAGDDILNTSEQGQAQIISGQANGAAAGDVVTVTVGGKTFTGVVQADGSWSVGVPASVIGALGEGSHSISVAVTDAAGNTGSATHGITLSGNPPEFTFDPISQDNVLNAQEAMQPLSLSGTSNLPNGSTVTVTLNNVNYQATLENGRWSVQVPVSDVLDLANTLYTVSVSGTDSVGNSGSAEANLLVDTALPQVIVNTFAGDNLVNNAEAAVDKTLSGRVTGAAAGDTVSVTVGGKSYTATVGSDLKWSVTIPSADLQAFGDGDLTFSASVTNAHGNTGTGERDININAELPGLRVNTISGDDVINAIEQQQDLAVTGSSTHLAEGTQITVTINNVEYVTTVNASGSWQIGVPAADLQAWTAGGMTVSVSAEDAWGNTVAAEHPIELDLNAVAVTIDTVTTDDMLNAAEKGADVTLSGQTQGVEAGQTVVVKFADQTFTAQVQQDGSWRLTVPASAMETLIDGRAQVSVSVTNVNGNSADASRVVIVDTQPPAITLDNLTDDNIINAAEAQQDLMLSGSTTAEAGQTVTVTLNGKSYQTTVQADGRWQLNVPAADVSALSDGNVTVTATVSDVAGNSSSADRVGLVDATVPQVTINDFVTDTNTVNQLAHAQAQILSGSVTGAAAGDLVIITINNVDYTTVVDAAGNWSLGLPASVVQGLTDGTWTINVSVTDQSGNTGSSSVDVVVNTVTPVIGINTLAADDVINAAEKGEDLLLSGTSNQPEGTTITVNLNGINYTATTDASGNWSVTVPASAVSALGEANYTVTASVTDNVGNSAAATHDVLVDSSLPVVTLNNFAGDNIVNAAEVAAGQTLTGKVSNAASGDTVTIILGGQTYTATVQDDLTWSLPLTQSQLTALGNGDLTVSASVTNAHGNTGSSSLDVTIDAQLPGLRIDTVAGDDVINVIEHAQNLVISGTSTDLAAGSTVTVTINGKSYSASVLADGTWQAAVPAADVSRWADGSLTISASAQDTSGNPVNIGTVVDVDLAPVAISINSVTDDNVLNAAEKGQDLVLSGSSSNVEAGQTVTIIFAGKTWTTTVDANGDWTCTVPAADLSGLKDGDASVQVSVTNVNGNAASSSQAFSVDTAAPAVTINTISGDNMLNAAEAAQDLTLSGTSTAEAGQTVTVTFNGNQYTAQVQANGSWTLDVPAADLAGIADGSAAVTVTVSDKAGNPASAGASVLVDTTVPQITFNIVAGDDIVNIAEHGQALIVTGKVTGAQAGDVITLTLNGKDYTAMLDGAGNWSVGVPAADVGALVNGDQTISATLTDKAGNSTSATHAFDVSLTAPVIAINTLAVDDVINATEKGQDLLISGTSNQPDGTRITVTLNGISYAATTDASGNWSVTVPAANVSVLGEASYSVTASVTDTAGNSANTSHSVLVDSALPQVTINAVATDDVINAAEVASGQTLSGKVSGAASGDTVTIGIGGNTYTATVQDDLSWSVNVASDVLTAIGNGDLTVTASVTNGHGNTGTGERDITIDASLPGLRVDTVAGDDVINSIEHGQNLIITGSSDGLASGSALTVTVNGKTYAATVLADGTWTAAIPAADVGALSAGTITVTVDGQSAAGNPVSISHDVKVDLAAVAISINPLASDDVINAAEKGADLVLSGSTTNVEENQTVTITFGGKLYTATVDASGNWTATVPSADLGGLKDGDASVQVSVTNVNGNSASAGREYSVDATAPTVSIEIVSDNNIINAAEAQQDLVVNGVSNAEAGQTVTVTLNGVDYTTTVQANGSWSVTVPSADIGAITDGDYTITAAVADKAGNPASADRDVLVDTTVPQLTINTVSDDDVINSAEHAQALIVTGSVTGAAAGDVVTVTINNKDYTATLDTSGRWSVGVPATDVSALAAGDYTITAALTDKAGNSNSTTHEVEVNLTAPVLTIDTVSGDDVINSSEKTQDLTITGTASGLAAGAVVTVMLNGKAYSATVDTNGQWTTTVPASEVGQLGEALYTVSASATDSVGNSSSTSHTVNVESVLPGVIINTVAGDDVINAAELATGQTISGTVVNAEAGNIVTVSVGGHSYTATVQDNLTWSVSVPESVLTALGNGDLTVTASVTNGVGNSGSGERDITIDANLPGLRVDTVAGDDVINSIEHGQNLIITGSSDGLTAGTALTVTVNGKTYPATVLADGTWSAALPSADVSALAAGTVTVNVEGQSSAGNPVTINHDVTVDLANVAISIGAIASDDVINAAERGADLVLSGTTSNVEENQIVTITFGGKNYTATVDAEGKWTATVPSADLTGLKDGDASVQVSVTNVNGNSASAGREYSVDATAPSVTINTIATDDILNASEAQSDLAISGTSTAEAGQTVTVSLNGKDYTTTVSANGSWTLNVPAADLAGLTDGSVTVTAAVSDKAGNPASVDHTLTVDVTVPAVTIHTVAGDDVINVAEHNQAQIISGSATGAAAGDKVTVTIGGQTYTTVLDAAGNWSVGVPASVISGLSDGSVTVTASVTDAAGNTGSGTHNVTVDTGLPSVSFNAISDDNVLNAVEKGQDLSVSGTSANLAEGTVVTVTLNGKNYTATTAADGTWSLTVPAADLAGLGQASYTLNATATNGVGNSVSSSANLLVDTALPTVTINTVAGDNVINAAEVAAGQTLSGTVANAEAGNTVTVTIGGHSYTATVQNNLSWSVNVPSDVLTALGNGSLSVTATVTNGHGNTGTGEREIAIDANLPGLRVNTVAGDDVVNTIEHAQNLIVSGSSDGLAPGTALTVTVNGKDYAATVLADGTWSAAIPSTDVSAWPEGTVKISVTGDSAAGNPITISHDVTVDLATVAISINALATDDVINAAEKGADLVLSGATTNVEAGQTVTISLNGRIYTTTVDDSGNWTYTVPSADLAGLKDGDASVQVSVTNVNGNSASAGREYSVDATAPSVTINTIATDDILNATEAQSDLAISGTSTAEAGQTLTVSLNGKDYTTTVSANGSWTLNVPAADLAGLTDGSVTVTASVSDKAGNPASVDHTLTVDVTVPAVTIHTVAGDDVINVAEHNQAQIISGSATGAAAGDTVTVTIGGQSYTTVLDAAGNWSVGVPANVISGLSDGSVTVTASVTDAAGNTGSGTHNVTVDTGLPSVSFNAISDDNVLNAVEKGQDLSVNGTSANLAEGTVVTVTLNGKNYSATTAADGTWSLTVPAADLSGLGEASYTLSATATNGVGNSISTTANLLVDTALPTVTINTVAGDNVINAAEVAAGQTITGKVANADIGNTVTVNIGGNTYTATVQSDLTWSVNVPESVLTALGNGDLTVSATVTNDHGNTGTGERDITIDASLPGLRVDTVAGDHVINSIEHGQNLIVTGSSDGLAAGTTLTVTVNGKTYAASVLADGTWSAAIPAADVGALAAGTVTVTVAGQSAAGNPVSISHDVTVDLAAVAISIDAIATDDVINAAEKGADLVLSGSTSNVEENQTVTISFGGKSYTAKVDADGNWTATVPSSDLAGLKDGDASVQVSVTNVNGNSASAGREYSVDATAPTVTIDTVAGDNVINGSEAAAGVAISGTTTAEVGQTVTVNLGGNSYTAQVQQGGVWSINVPAADLSTLADNGYTVQVSVSDAAGNPGSAGKAITLDTTPPTVSFNVVAGDDVINSVEHGQAQVISGTATGASVGDKLVITIGSNQYTTTVDASGKWSVGVPASDISALTDGTVTLSATITDSAGNSSTQTHDVVVNTASVALTVNTLSGDDVINAAEAGASLVINGSSAQFANGTQVTITLNGKSYTATIQSDGSWTTTVPAADVGTLADGASYQVSVSAQDSAGNSASATHTISVDTTAPVISVNTLSGDDVLNAAEAQQPLTVHGSSSAEAGQTVTVTLGGKTYTALVANDGTWTLDVPAADLANLSEGALTVTASVNDKAGNNGQTTHTLTVDTVAPAVTISTVADDDIVNNAEQLAGQTISGTTTAEQGQTVTVSFNGHSYQATVAANGSWSVFVPGRDFLGLSDGDYTITATVSDKAGNPGSATHDVTLNGDVPTIAINTFAQDDIVNAAEHGTPLVISGTTDAPTGQTVTITLNGKTYTATVQNDGTWSYTVGSADVTALADGGSYVINAQVSNAIGNSASDNHTVTVDLTAPSMGISIDSLQNDTGLSANDFITNDSQVVVNGSLTAQLGNNEKAQISLDGGTTWIDLTVTGTTWRYTDGRTLTDGTYQYQVRVIDNAGNVGATDSQDVVIDLTKPAAATITVDSVSQDTGLSDSDFITSDNQISLKGTLGAALGSGDHAQISLDGGATWTDVSVSGLSWTYVDGRTLADGDYNYQLRVIDDAGNISATTSQVVTIDTVAPDASKTIAIDSISDDTGLSSSDFITNDTSLTLHGSLGATLADGEYAQISIDGGVTWQNVIVTGNSWYYVDGRTLGNQTYDYYVRVVDAAGNVGASAHQQVTVDTVAPDAAITVTVDNITVDTGFDNNDFLTSSTSYTLNGTLGAELGAGEYVQVSMDGGTTWLYATVSGTRWSYNDTRTLADGDYRYQVRVVDQAGNVGATTTQDVTVDTQAPQYGITIDSISEDTGQSGSDFITMDTSLTINGSLGSALASDERVQISLDGGNTWIDTTVTNQRWSYTDTRDLADGDYTYQVRIIDQAGNVGSTSSQVVTVDTTPPDTVGTVVSYTDGEGERTGTYGASVATDDTSPLINGTLNRAPEDGEIVQLYRDGILLGQVTMNGSASWSYQDNGLLDGNHTYILRVTDKAGNYTESDGFVLNVDTSIPTTTAAITAQTTSDTTPIVSGTVSADLVNGEYLVVTVNGKTYTSQTGGAVVVDPDHNTWYLQIPDSDALSVASYDVTAQVKSSAGNGNTTGTATGSLVIDTTSVNTDWATTAGNSNNSTMTLGMNSSGLWNIIANGQSYSSSDDSTYAGNTLTNTRSYYVVSQTAADFDRNGTQDIFATENTYAGSTQVMWTYDGSSYTASQLAMGTTIWYGGVIAYDKTGDGYLDLAYGDAGMDSLTYLVNTNGVLSPDGTGGEGGFYGQFDSGREISGVDLNNDGTVDIVQHTNRSGAYSLTVINNNGNGTLSIGQNLTNVFVANASNTTTAASMTWADFNGDGYMDLYLGSSYNNNGGVIYYNDGTGQLSTTKSAVEASNATAGYLSVAVDWNGDGQMDIIKLSTYGSSQTATLFTNNGYGSTWTSSQLASGLANVTGVAAVDYNWDGAQDLLVSQQNGKVVLVQNNAEIADGTAMHLHIVDSEGINAYYGNTVNLYNAAGVLVASQIINAQSGIGSNDTSALVSFYGLDPNETYSAEIVKITNGVSDNVTWTGLDAGNGKEGYVLTAEAATGGHSGTITGTGYNDTFIAEDETYTYNGSGGWNTHSDYDTWSNTGGMDVVDYRNATSGITVDLRLSTAQDTGFGTTRLLNIEGINGSDYDDVITGNSGDNQFEGRGGNDTFNIGSGGHDTLLYKLINASDATGGNGSDVVNGFTVGTWEGTADTDRIDLRDLLSDSGYTGTGSASYVNGVATLDSSAGNIADYIRVVQNGSNTEIQVDLDGTGGQFTPTTLVTLNGVQTDLATLLANHQLLIA
>CP031565.1|AXO47285.1|4522891_4525057_-|type-I-secretion-system-permease/ATPase
MKTHPQYEPWLQGMLIIAKYYRLDFSAEHVRVTINHESQSPRQLVLEEMARQLGLGMRWVAAGAVALDPWRLPLLAEFTGGQIAVINRMDNEGNVSVQFSGDGGLETTLTRDELGSRLKGLMVLRPLESTPDARVDDYIKPYEKNWFWQLALKDWRRYSDIMLVALVANVLALSGMVFSMQVYDRVVPSQSEATLWVLFGGVMIAIVFEFIMRMLRVHISDVVGKRADLRISERVFAHALRIKNGARSKSTGSFIAQIRELESVRELITSTTIAAISDLPFFLLFVFILWMIGGPLVLVVLLAVPLLLIPGLLVQRPLGKLSSEGMRESAIRNATLVEAVQGLEDIKLMRAEQRFQNQWNNTNDVAASVGMKQRWLTGLLLTWTQEVQSIVYAVVLLVGCYLVISGDMTTGALVGTSILASRTIAPLSQISGVLSRWQSAKVARKGLDDLMQRPIDDPQHGKKVHKAHLRGDYRLDDVGFYYDEEEKLTVLNISKLRIHAGERVAVLGRNGSGKSTLLHLLAGMQEPQQGSILLDDIALNHLDPADVRRDMQLLSQQARLFFGSVRDNILMGNPLATDEEIHQALVNSGALEFVRKQKMGLNTIINEGGTGLSGGQRQALLLARALITSPNILLLDEPTAWLDEVSEKQFIQHLHQWLGKRRTLVVATHRLPILDLVDRIIVLENGKVVMDGPRDAILRQHGMAPQQAPQRTVKLKTEGVA
>CP031565.1|AXO47295.1|4559003_4559609_+|FMN-dependent-NADH-azoreductase
MSKVLVLKSSILAGYSQSGQLSDYFVEQWREQHSADEITVRDLAANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIAELQAHDVIVINAPMYNFNIPTQLKNYFDLVARAGVTFRYTENGPEGLVKGKRAVVLTSRGGIHKDTPTDLVAPYLTLFLGFIGITDVNFVFAEGIAYGPEVATKAQTDAKAAIDSLVAA
>CP031565.1|AXO47296.1|4559699_4560386_+|RluA-family-pseudouridine-synthase
MSVIIDTFIAPPCHDDIEILWQDEHLLLINKPSGLLSLSGKNPQNLDSVHHRLVQTFPGCTLVHRLDFGTSGLMVIARNKAINAALCHQFSQRAVNKVYTALLCGHVEQDEGTVDAPIAKDPALFPLMTICARTGKPARSRYRVVERIYQDKIMPLTRVELTPETGRTHQLRIHCQQLGHPILGCDLYGGLEWPGAEETPRLMLHASALNFIHPLSGETINARHAAPF
>CP031565.1|AXO47297.1|4560393_4560933_-|DUF2058-domain-containing-protein
MTKLTLQEQMLKAGLVSSKKMAKVQRTAKKSRVQAREAREAVEENKKAQLERDKQLSEQQKQAVLAKEFRAQVKQLIEMNRITVAKGNITFNFTDGNLIKKIEVDKQTQTQLINGRLAIARLVINANGDCDYAIIPAVVADKIAQRDADSIVLNSALSQEEQDEDDPYADFKIPDDLMW
>CP031565.1|AXO47596.1|4561101_4562076_+|DUF1852-domain-containing-protein
MSQAFTFTLKRSCFDENYNPSENTRTTTNFANLARGEKRQENLRNTLVMINNRFNALASWDNPKADRYAVELEIISVDMNIGGDFTFPAIEILQTTIVDKKTHERIEGIVGNNFSSYVRDYDFSVLLLEHNKDRARFSLPENFGELHGNIFKSFVHSAEYQANFKKAPVICLSVSSKDTYRRTGNHHPVLGYEYQPDGESLTEQYFAKMGLKVRYFMPENSVAPFAFFFTGDLLRDYTNLELIGTISTMETFQKIYRPEIYNANSAAGQCYQPDLNQQDHSLTKIVYDREERSRLAIEQGKYTEERFIKPYKTLLEQWSQHFTL
>CP031565.1|AXO47298.1|4562101_4563130_+|methionine-synthase
MKTLLPTSTAGSLPKPTWLAQPETLWSPWKLQDEELLAGKQDALRLSLDEQIRAGIDIVSDGEQTRQHFVTTFIEHLSGVDFENRQTVRIRNRYDASVPTVVDAVARQKPVFVDDAKYLRQLTDKPIKWALPGPMTMIDTLYDAHYKSREKLAWEFAKILNQEARELEAAGVDIIQFDEPAFNVFFDEVNDWGIAALERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQTSKIDIISLECHNSRVPMDLLELIRGKKVMVGAIDVATQTIETPEEVADTLRKALQFVDADKLYPSTNCGMAPLSRQVANGKLKALSAGADIIRRELAR
>CP031565.1|AXO47299.1|4563133_4564066_-|LysR-family-transcriptional-regulator
MMDAGHISIRALLIFIDVYETQNFSVVARREGISASQVSRVIHQLEDALGQQLFYRNTRAIMPTESGHLFVRYARAMAGNMEDARRELDERAREPSGTLRINGPVFFGQRHIAPGLPGLLARYPRLSIELTLTDDFIDPHRDAADVIFRIGALTDSSFHARVFGQQFYHLAASPDYLQKHGAPEGPDDLSRHHCLVYRGSSGPNRWLIRQPGEAWVHYPIVPLMTSNNAETLLIAALGGMGVVLFPDWMVSERLKSGELVALLPEMECSINTEPLTIAAIYPNARHPPLNVRAVIDYYIERFGTPLYWQT
>CP031565.1|AXO47300.1|4564164_4564599_+|DMT-family-transporter
MHIILILLVIAGGMGLSVEAGLLGPLGAEVGDLWAAFSIFSVGTGLTFLLMLFFSPRNSPSFFAQPSWHLLGGVLGPVYVIILTIATPAIGIAMTMIGILAGQVFKSLIIDHYGLLGTPHRRIDTKRIIALGFIIAALILVAQG
>CP031565.1|AXO47301.1|4564603_4565062_+|DMT-family-transporter
MTVIMIILAVIGGATLSIQAAINGQLGSSVGVFKSAFLTFSVGALVTAMLIFFFEPKQAVSLMDVPKWQLLGALCGVPYIVIMVLAVQRIGTAVATVAVILGQLAMSMLIDNFGWLNNEAIPFSVSRFGAVVCLSIALFFIYSSSKPQPEED
>CP031565.1|AXO47302.1|4565058_4565592_-|DUF3833-domain-containing-protein
MKRFLLMALALTMLVAGCSTEVTEYRQQQPRLDIFTYFQGKTEAWGMVQDRSGKQIRRFHVEIAGDVIGDTLTLNEHFVYDDGEKQQRVWHIRRVGQNRYEGTAGDIEGVATGQAAGNALNWRYSMNVKADGKTWLLHFDDWMYLQDSTRLFNKTEMKKFGVTVATVTLFFTRKEGG
>CP031565.1|AXO47303.1|4565754_4566063_-|DUF2878-family-protein
MKRYGQVFLLAIGFDLYWTLTGLIAFTGASLMPLWMVALWLMFATVWTQLTRTTTLPGWLLTVLATLGGPVAYLIGERLGAIYRLYLSASDARRQLYRVRRR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031565_1	1.1\|4554797\|58\|CP031565\|CRISPRCasFinder	4554797-4554854	58	NZ_LN868946	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence	15954-16011	12	0.793

1. spacer 1.1|4554797|58|CP031565|CRISPRCasFinder matches to NZ_LN868946 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence) position: , mismatch: 12, identity: 0.793

gatacgataaaaagccgggtggcggctacgccttacccggcctacatgttctacatat	CRISPR spacer
tcgcaaataaaaagccgggtggcggctacgccttacccggcctacatcgtctgcttga	Protospacer
     .*****************************************  ***.* *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

533 : 33632

Salmonella_phage(30.43%)

holin,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO43294.1\|533_1268_-	hypothetical protein	H6WRU1	Salmonella_phage	8.0e-114	85.6
AXO43295.1\|1285_1672_-	hypothetical protein	A0A1V0E5P4	Salmonella_phage	2.1e-65	94.5
AXO43296.1\|1668_2067_-	hypothetical protein	Q5G8X5	Enterobacteria_phage	1.3e-62	90.9
AXO43297.1\|2074_2437_-	hypothetical protein	A0A1V0E5P3	Salmonella_phage	3.9e-61	90.8
AXO43298.1\|2429_2609_-	DUF551 domain-containing protein	Q5G8X7	Enterobacteria_phage	1.2e-26	91.5
AXO43299.1\|2608_3010_-	hypothetical protein	I6S619	Salmonella_phage	1.1e-56	76.7
AXO43300.1\|3072_3357_-	hypothetical protein	A0A1V0E5P8	Salmonella_phage	1.7e-32	75.3
AXO43301.1\|3367_4465_-	hypothetical protein	G0ZND9	Cronobacter_phage	8.7e-181	84.4
AXO43302.1\|4477_4939_-	hypothetical protein	G0ZND8	Cronobacter_phage	4.5e-62	80.4
AXO43303.1\|4951_6217_-	hypothetical protein	Q5G8Y2	Enterobacteria_phage	2.8e-215	90.3
AXO43304.1\|6219_7146_-\|head	phage head morphogenesis protein	Q5G8Y3	Enterobacteria_phage	1.7e-161	91.9
AXO43305.1\|7105_8455_-	DUF1073 domain-containing protein	A0A1V0E5Q5	Salmonella_phage	1.0e-231	87.5
AXO43306.1\|8470_9949_-	DNA-packaging protein	G0ZND4	Cronobacter_phage	5.0e-256	87.0
AXO43307.1\|9935_10415_-	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	1.6e-59	86.5
AXO43308.1\|10447_11086_-	hypothetical protein	I6S676	Salmonella_phage	3.4e-113	90.6
AXO43309.1\|11089_11296_-	hypothetical protein	NA	NA	NA	NA
AXO43310.1\|11495_11705_-	hypothetical protein	NA	NA	NA	NA
AXO43311.1\|11770_11986_-	hypothetical protein	K7PM01	Enterobacterial_phage	1.2e-17	90.9
AXO43312.1\|11936_12215_-	hypothetical protein	K7PGW4	Enterobacterial_phage	5.1e-05	95.5
AXO43313.1\|12211_12754_-	hypothetical protein	A0A0U2S643	Escherichia_phage	2.7e-74	69.8
AXO43314.1\|12756_13032_-\|holin	phage holin family protein	S4TNV9	Salmonella_phage	5.8e-09	41.0
AXO43315.1\|13028_13430_-	hypothetical protein	NA	NA	NA	NA
AXO43316.1\|13705_14203_-	antiterminator	G8C7V7	Escherichia_phage	1.1e-93	99.4
AXO43317.1\|14202_14319_-	hypothetical protein	NA	NA	NA	NA
AXO43318.1\|14315_14678_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	1.9e-52	84.0
AXO43319.1\|14674_14965_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	6.3e-46	91.7
AXO43320.1\|14957_15128_-	hypothetical protein	K7P7K0	Enterobacteria_phage	1.0e-19	92.5
AXO43321.1\|15127_15583_-	hypothetical protein	K7P7B8	Enterobacteria_phage	4.0e-63	75.5
AXO43322.1\|17337_17568_-	hypothetical protein	G8C7U9	Escherichia_phage	1.4e-32	94.7
AXO43323.1\|17564_17909_-	ArsR family transcriptional regulator	G8C7U7	Escherichia_phage	4.6e-56	96.5
AXO43324.1\|17905_18778_-	AAA family ATPase	K7PLU3	Enterobacteria_phage	5.8e-103	66.2
AXO43325.1\|18762_19632_-	replication protein	K7PGT1	Enterobacteria_phage	5.1e-67	51.0
AXO43326.1\|19976_20522_-	hypothetical protein	G8C7U3	Escherichia_phage	2.0e-85	90.6
AXO43327.1\|20551_20779_-	helix-turn-helix domain-containing protein	G8C7U2	Escherichia_phage	4.1e-37	100.0
AXO43328.1\|20889_21579_+	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	2.2e-126	100.0
AXO43329.1\|21803_23108_+	hypothetical protein	NA	NA	NA	NA
AXO43330.1\|23434_23632_-	hypothetical protein	G8C7T7	Escherichia_phage	1.3e-23	92.3
AXO43331.1\|24036_24300_+	hypothetical protein	S4TNW9	Salmonella_phage	2.3e-07	43.4
AXO43332.1\|24618_24828_+	cell division protein FtsZ	M9NZE2	Enterobacteria_phage	6.7e-34	95.7
AXO43333.1\|24898_25867_+	hypothetical protein	M9P0E1	Enterobacteria_phage	1.6e-45	74.9
AXO43334.1\|25874_26159_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	7.2e-47	92.6
AXO43335.1\|26177_26924_+	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	5.3e-65	65.3
AXO43336.1\|26920_27538_+	exonuclease	A0A0S2SY31	Pseudomonas_phage	6.2e-59	57.3
AXO43337.1\|27534_27963_+	regulator	G8C7S8	Escherichia_phage	2.9e-71	95.1
AXO43338.1\|27959_28112_+	DUF1317 family protein	T1SAR0	Salmonella_phage	1.3e-05	44.2
AXO43339.1\|28108_28768_+	DNA methyltransferase	G8C7S6	Escherichia_phage	3.9e-120	91.3
AXO43340.1\|28764_29820_+	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	5.8e-150	66.6
AXO43341.1\|29816_30035_+	hypothetical protein	NA	NA	NA	NA
AXO43342.1\|30031_30643_+	hypothetical protein	NA	NA	NA	NA
AXO43343.1\|30734_30950_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	2.0e-17	63.8
AXO43344.1\|30949_31678_+	hypothetical protein	L0AQZ0	Klebsiella_phage	1.8e-41	38.6
AXO43345.1\|31687_31963_+	hypothetical protein	NA	NA	NA	NA
AXO47442.1\|32070_32319_+	DNA-binding protein	S4TND0	Salmonella_phage	8.3e-15	50.0
AXO43346.1\|32351_33632_+	DUF3596 domain-containing protein	B6DZ48	Enterobacteria_phage	5.1e-124	51.2

DBSCAN-SWA_2

204848 : 263631

Escherichia_phage(17.95%)

protease,portal,tail,plate,tRNA,terminase,integrase,holin

attL 233436:233450|attR 263186:263200

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO43506.1\|204848_205349_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
AXO43507.1\|205757_207089_+	MFS transporter	NA	NA	NA	NA
AXO43508.1\|209246_209693_+	DUF441 domain-containing protein	NA	NA	NA	NA
AXO43509.1\|209676_210468_-	AraC family transcriptional regulator	NA	NA	NA	NA
AXO43510.1\|210567_211755_+	cyanate MFS transporter	NA	NA	NA	NA
AXO43511.1\|211786_212494_-	hypothetical protein	NA	NA	NA	NA
AXO43512.1\|212645_212990_+	DUF488 domain-containing protein	NA	NA	NA	NA
AXO43513.1\|212990_213296_-	hypothetical protein	NA	NA	NA	NA
AXO43514.1\|213376_213631_-	DUF333 domain-containing protein	NA	NA	NA	NA
AXO43515.1\|213942_214971_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	1.1e-12	32.1
AXO43516.1\|215016_215115_+	hypothetical protein	NA	NA	NA	NA
AXO47454.1\|215115_215190_+	protein YoaJ	NA	NA	NA	NA
AXO43517.1\|215243_215492_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
AXO47455.1\|215861_215954_+	stress response membrane protein YncL	NA	NA	NA	NA
AXO43518.1\|216078_217578_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
AXO43519.1\|217582_217828_-	DUF2543 family protein	NA	NA	NA	NA
AXO43520.1\|217903_218071_-	isocitrate dehydrogenase	Q77Z09	Phage_21	2.3e-21	92.6
AXO43521.1\|218365_218521_+	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	1.2e-16	78.4
AXO43522.1\|218541_218952_+	type II toxin-antitoxin system HicB family antitoxin	Q775F5	Haemophilus_virus	1.9e-35	50.4
AXO43523.1\|219033_219600_+	serine acetyltransferase	NA	NA	NA	NA
AXO43524.1\|219603_220026_-\|tail	tail fiber assembly protein	U5P083	Shigella_phage	2.0e-24	47.9
AXO43525.1\|222591_223143_-\|tail	phage tail protein I	A0A0F7LDF3	Escherichia_phage	3.3e-27	41.0
AXO43526.1\|223135_224050_-\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	3.1e-67	49.7
AXO43527.1\|224033_224387_-\|plate	baseplate assembly protein	E5FFH4	Burkholderia_phage	6.5e-21	50.0
AXO43528.1\|224423_225542_-	late control protein D	R9TNM7	Vibrio_phage	2.7e-36	33.1
AXO43529.1\|225544_225760_-\|tail	phage tail protein	R9TR63	Vibrio_phage	8.8e-13	52.9
AXO43530.1\|225734_226205_-\|tail	phage tail protein	D4HTW5	Vibrio_phage	1.1e-15	34.9
AXO43531.1\|228406_228694_-\|tail	phage tail assembly protein	NA	NA	NA	NA
AXO43532.1\|228745_229252_-\|tail	phage tail protein	NA	NA	NA	NA
AXO43533.1\|229248_230718_-\|tail	phage tail protein	R9TMQ0	Vibrio_phage	4.1e-77	47.1
AXO43534.1\|230614_231379_-\|plate	phage baseplate assembly protein V	A0A192Y8K5	Salmonella_phage	4.0e-07	30.6
AXO43535.1\|231371_231926_-	hypothetical protein	NA	NA	NA	NA
AXO43536.1\|231934_232597_-	hypothetical protein	R9TR34	Vibrio_phage	1.4e-21	36.7
AXO43537.1\|232598_232955_-	hypothetical protein	NA	NA	NA	NA
AXO43538.1\|232954_233290_-	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	4.9e-10	42.7
AXO43539.1\|233358_235395_-\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	1.8e-200	53.7
233436:233450	attL	NA	NA	NA	NA
AXO43540.1\|235407_236928_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	9.6e-154	55.8
AXO43541.1\|236936_237152_-	hypothetical protein	NA	NA	NA	NA
AXO43542.1\|237148_239269_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	1.1e-304	74.8
AXO43543.1\|239272_239776_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	3.1e-48	62.9
AXO43544.1\|239955_240180_-	hypothetical protein	NA	NA	NA	NA
AXO43545.1\|240178_240610_+	hypothetical protein	NA	NA	NA	NA
AXO43546.1\|240644_241142_+	hypothetical protein	NA	NA	NA	NA
AXO43547.1\|241652_241844_-	hypothetical protein	K7PM01	Enterobacterial_phage	3.2e-14	85.4
AXO43548.1\|241934_242147_+	hypothetical protein	NA	NA	NA	NA
AXO43549.1\|242398_242593_-	hypothetical protein	K7PM01	Enterobacterial_phage	2.9e-15	75.0
AXO43550.1\|242549_242825_-	hypothetical protein	G8C7W1	Escherichia_phage	1.7e-29	80.9
AXO43551.1\|242826_243456_-	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	2.3e-101	86.6
AXO43552.1\|243455_243737_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.3e-19	46.2
AXO43553.1\|243723_244110_-	hypothetical protein	A0A192Y8P2	Salmonella_phage	2.7e-52	86.7
AXO43554.1\|244871_245063_-	hypothetical protein	NA	NA	NA	NA
AXO47456.1\|245721_246327_-	hypothetical protein	H9C175	Pectobacterium_phage	2.1e-72	64.3
AXO43555.1\|246339_247359_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.5e-94	51.6
AXO43556.1\|247366_247567_-	hypothetical protein	H6WRY8	Salmonella_phage	7.9e-08	49.2
AXO43557.1\|247822_248077_-	cloacin	NA	NA	NA	NA
AXO43558.1\|248086_249601_-	hypothetical protein	NA	NA	NA	NA
AXO43559.1\|249946_250180_-	hypothetical protein	H6WRY6	Salmonella_phage	3.3e-21	66.2
AXO43560.1\|250218_250452_-	DNA damage-inducible protein I	K7PM44	Enterobacteria_phage	2.4e-24	71.4
AXO43561.1\|250800_251175_-	hypothetical protein	M9NZE4	Enterobacteria_phage	4.5e-12	52.7
AXO43562.1\|251174_251507_-	hypothetical protein	NA	NA	NA	NA
AXO43563.1\|251503_251764_-	DUF977 family protein	H6WRX9	Salmonella_phage	1.7e-26	69.9
AXO43564.1\|251767_252187_-	PerC family transcriptional regulator	NA	NA	NA	NA
AXO47457.1\|252201_252783_-	replication protein	A0A0U2JGJ0	Escherichia_phage	5.2e-68	77.5
AXO43565.1\|253812_254367_-	hypothetical protein	M9NZI6	Enterobacteria_phage	2.9e-15	36.0
AXO43566.1\|254368_254593_-	XRE family transcriptional regulator	K7PKH4	Enterobacteria_phage	1.2e-17	57.1
AXO43567.1\|254701_255091_+	helix-turn-helix domain-containing protein	K7PH19	Enterobacteria_phage	1.4e-19	61.6
AXO43568.1\|255272_255521_+	hypothetical protein	NA	NA	NA	NA
AXO43569.1\|255793_257845_+	exonuclease	S4TNL0	Salmonella_phage	6.7e-126	51.8
AXO43570.1\|257897_258143_+	excisionase	NA	NA	NA	NA
AXO43571.1\|258123_259260_+\|integrase	integrase	O21925	Phage_21	2.9e-123	59.5
AXO43572.1\|259246_259525_-	hypothetical protein	NA	NA	NA	NA
AXO43573.1\|259569_259863_-	hypothetical protein	NA	NA	NA	NA
AXO43574.1\|259974_261225_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	7.9e-21	94.4
AXO43575.1\|261342_262005_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
AXO43576.1\|262004_262478_+	NUDIX hydrolase	NA	NA	NA	NA
AXO43577.1\|262518_263631_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
263186:263200	attR	NA	NA	NA	NA

DBSCAN-SWA_3

442436 : 452436

Klebsiella_phage(38.46%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO43744.1\|442436_442730_-	hypothetical protein	A0A286S2B5	Klebsiella_phage	7.0e-29	82.5
AXO43745.1\|442731_442959_-	transcriptional regulator	A0A0N7C1T6	Escherichia_phage	3.9e-11	54.3
AXO43746.1\|443083_443785_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	3.6e-55	46.2
AXO43747.1\|443960_444269_+	hypothetical protein	A0A286S1T9	Klebsiella_phage	3.8e-17	48.0
AXO43748.1\|444258_444450_+	hypothetical protein	NA	NA	NA	NA
AXO47466.1\|444626_444851_+	hypothetical protein	NA	NA	NA	NA
AXO43749.1\|444843_445251_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	1.4e-46	86.6
AXO43750.1\|445222_445444_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.1e-18	66.7
AXO43751.1\|445440_445854_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	1.1e-46	67.2
AXO43752.1\|445854_446079_+	hypothetical protein	A0A1B5FPG2	Escherichia_phage	8.3e-14	58.3
AXO47467.1\|446229_446478_+	excisionase	S4TND0	Salmonella_phage	5.4e-38	91.4
AXO43753.1\|446522_447815_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	2.1e-242	95.3
AXO43754.1\|447999_449202_+	nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	7.6e-45	31.9
AXO43755.1\|449370_450771_+\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	1.9e-79	37.3
AXO43756.1\|451377_452436_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	3.1e-90	50.1

DBSCAN-SWA_4

2544926 : 2643528

uncultured_Caudovirales_phage(44.44%)

capsid,protease,portal,tail,tRNA,terminase,integrase,head

attL 2564107:2564123|attR 2593341:2593357

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO45546.1\|2544926_2545874_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	8.4e-07	30.5
AXO45547.1\|2545898_2546408_-	peptide deformylase	E3SLL2	Synechococcus_phage	4.4e-18	40.3
AXO45548.1\|2546535_2547660_+	DNA-protecting protein DprA	NA	NA	NA	NA
AXO45549.1\|2547631_2548105_+	DUF494 domain-containing protein	NA	NA	NA	NA
AXO45550.1\|2548131_2548686_+	hypothetical protein	NA	NA	NA	NA
AXO45551.1\|2548678_2549251_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	S4VW33	Pandoravirus	4.9e-10	26.2
AXO45552.1\|2549255_2550074_+	shikimate dehydrogenase	NA	NA	NA	NA
AXO45553.1\|2550070_2550319_+	DUF1488 domain-containing protein	NA	NA	NA	NA
AXO45554.1\|2550294_2550849_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
AXO45555.1\|2556898_2557120_-	hypothetical protein	NA	NA	NA	NA
AXO45556.1\|2557368_2560482_-	hydrophobe/amphiphile efflux-1 family RND transporter	NA	NA	NA	NA
AXO45557.1\|2560493_2561633_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AXO45558.1\|2562029_2562677_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
AXO45559.1\|2562671_2564756_-	bifunctional diguanylate cyclase/phosphodiesterase	G3MA91	Bacillus_virus	7.0e-22	34.8
2564107:2564123	attL	NA	NA	NA	NA
AXO45560.1\|2564895_2565060_-	DUF2556 domain-containing protein	NA	NA	NA	NA
AXO45561.1\|2565426_2566653_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.4e-150	62.2
AXO45562.1\|2566744_2567551_+	hypothetical protein	NA	NA	NA	NA
AXO45563.1\|2567655_2567940_+	AlpA family phage regulatory protein	NA	NA	NA	NA
AXO45564.1\|2567948_2568728_+	hypothetical protein	Q8HA02	Enterobacteria_phage	3.6e-40	52.0
AXO47525.1\|2569191_2569728_+	host cell division inhibitor Icd-like protein	A0A2H4JGN8	uncultured_Caudovirales_phage	1.6e-10	52.3
AXO45565.1\|2569720_2569918_+	hypothetical protein	NA	NA	NA	NA
AXO45566.1\|2569910_2570138_+	aminotransferase	A0A2H4JBA1	uncultured_Caudovirales_phage	3.0e-27	90.1
AXO45567.1\|2570134_2570503_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	5.7e-52	82.8
AXO45568.1\|2570499_2570865_+	hypothetical protein	NA	NA	NA	NA
AXO45569.1\|2570864_2572994_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	4.1e-187	57.4
AXO45570.1\|2573339_2573675_+	hypothetical protein	NA	NA	NA	NA
AXO45571.1\|2573721_2574234_-	hypothetical protein	NA	NA	NA	NA
AXO45572.1\|2574496_2575657_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	1.1e-205	95.9
AXO45573.1\|2575708_2576269_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	2.8e-95	92.5
AXO47526.1\|2576279_2577506_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.3e-233	97.1
AXO45574.1\|2577502_2577841_+\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.1e-52	92.9
AXO45575.1\|2577837_2578131_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	2.2e-46	90.7
AXO45576.1\|2578130_2578574_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	3.9e-79	93.9
AXO45577.1\|2578847_2579204_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	3.0e-58	94.9
AXO45578.1\|2579187_2580849_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	97.8
AXO47527.1\|2580881_2581475_+\|tail	tail assembly protein	F1C572	Cronobacter_phage	5.9e-51	51.8
AXO45579.1\|2581483_2581672_+	hypothetical protein	NA	NA	NA	NA
AXO45580.1\|2581825_2582122_-	Fis family transcriptional regulator	NA	NA	NA	NA
AXO45581.1\|2582145_2583111_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
AXO45582.1\|2583441_2584182_-	carbonic anhydrase family protein	NA	NA	NA	NA
AXO45583.1\|2584319_2585201_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
AXO45584.1\|2585212_2586664_-	sodium/pantothenate symporter	NA	NA	NA	NA
AXO45585.1\|2586653_2586896_-	DUF997 family protein	NA	NA	NA	NA
AXO45586.1\|2587004_2588354_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
AXO45587.1\|2588364_2588829_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
AXO47528.1\|2588850_2589303_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
AXO45588.1\|2589537_2590137_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
AXO45589.1\|2590137_2591139_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
AXO45590.1\|2591216_2592191_-	oxidoreductase	NA	NA	NA	NA
AXO45591.1\|2592374_2594315_+	RNase E specificity factor CsrD	NA	NA	NA	NA
2593341:2593357	attR	NA	NA	NA	NA
AXO45592.1\|2594597_2595641_+	rod shape-determining protein	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
AXO45593.1\|2595703_2596720_+	rod shape-determining protein MreC	NA	NA	NA	NA
AXO45594.1\|2596719_2597208_+	rod shape-determining protein MreD	NA	NA	NA	NA
AXO45595.1\|2597217_2597811_+	septum formation inhibitor Maf	NA	NA	NA	NA
AXO45596.1\|2597800_2599270_+	ribonuclease G	NA	NA	NA	NA
AXO45597.1\|2603201_2604647_+\|protease	metalloprotease TldD	NA	NA	NA	NA
AXO45598.1\|2604696_2605623_-	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
AXO45599.1\|2605802_2606006_+	DUF1656 domain-containing protein	NA	NA	NA	NA
AXO47529.1\|2606013_2606946_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
AXO45600.1\|2606951_2608919_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
AXO45601.1\|2609005_2610460_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
AXO45602.1\|2610505_2610778_+	hypothetical protein	NA	NA	NA	NA
AXO45603.1\|2610837_2611101_-	DUF1471 domain-containing protein	NA	NA	NA	NA
AXO45604.1\|2611479_2611950_-	transcriptional regulator ArgR	NA	NA	NA	NA
AXO45605.1\|2612347_2613286_+	malate dehydrogenase	NA	NA	NA	NA
AXO45606.1\|2613336_2614404_-\|protease	serine endoprotease DegS	NA	NA	NA	NA
AXO45607.1\|2614496_2615864_-\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	8.7e-21	26.4
AXO45608.1\|2616034_2616433_-	DUF1043 family protein	NA	NA	NA	NA
AXO45609.1\|2616622_2617747_+	cell division protein ZapE	NA	NA	NA	NA
AXO45610.1\|2618039_2618468_+	50S ribosomal protein L13	NA	NA	NA	NA
AXO45611.1\|2618483_2618876_+	30S ribosomal protein S9	NA	NA	NA	NA
AXO45612.1\|2619002_2619185_-	hypothetical protein	NA	NA	NA	NA
AXO45613.1\|2619183_2619822_+	stringent starvation protein A	NA	NA	NA	NA
AXO47530.1\|2619827_2620325_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	3.8e-27	54.6
AXO45614.1\|2620427_2621210_+	transcriptional regulator NanR	NA	NA	NA	NA
AXO45615.1\|2621332_2622226_+	N-acetylneuraminate lyase	NA	NA	NA	NA
AXO45616.1\|2622338_2623829_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.4e-08	21.3
AXO47531.1\|2623917_2624790_+	ROK family protein	NA	NA	NA	NA
AXO45617.1\|2624786_2625257_+	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA
AXO45618.1\|2625346_2626639_-	cytosine deaminase	NA	NA	NA	NA
AXO45619.1\|2626628_2627879_-	cytosine permease	NA	NA	NA	NA
AXO45620.1\|2628066_2629485_-	glutamate synthase small subunit	NA	NA	NA	NA
AXO45621.1\|2629494_2633955_-	glutamate synthase large subunit	NA	NA	NA	NA
AXO47532.1\|2634642_2635584_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.3e-17	34.4
AXO45622.1\|2635563_2637066_-	ATP-binding protein	A0A248XCZ8	Klebsiella_phage	5.7e-82	43.9
AXO45623.1\|2637203_2638850_+	DAK2 domain-containing protein	NA	NA	NA	NA
AXO45624.1\|2638942_2639962_-	NAD(P)-dependent alcohol dehydrogenase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	3.2e-44	31.0
AXO45625.1\|2640045_2640549_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXO45626.1\|2640672_2643528_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.6e-141	36.9

DBSCAN-SWA_5

2784241 : 2836294

Cronobacter_phage(56.0%)

capsid,protease,portal,tail,tRNA,terminase,integrase,head,holin

attL 2783292:2783341|attR 2813991:2814040

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2783292:2783341	attL	NA	NA	NA	NA
AXO45764.1\|2784241_2785264_-\|integrase	site-specific integrase	F1BUS9	Erwinia_phage	1.0e-122	64.6
AXO45765.1\|2785265_2785847_-	phage repressor protein	A0A218M4J1	Erwinia_phage	4.1e-28	36.4
AXO45766.1\|2785987_2786209_+	regulator	NA	NA	NA	NA
AXO45767.1\|2786239_2786743_+	hypothetical protein	F1BUN6	Cronobacter_phage	1.6e-57	70.1
AXO45768.1\|2786752_2786947_+	hypothetical protein	NA	NA	NA	NA
AXO45769.1\|2786936_2787365_+	hypothetical protein	F1BUN5	Cronobacter_phage	2.0e-24	50.0
AXO45770.1\|2787364_2787766_+	hypothetical protein	F1BUN2	Cronobacter_phage	6.0e-39	54.1
AXO45771.1\|2787832_2788066_+	DUF2732 family protein	NA	NA	NA	NA
AXO45772.1\|2788056_2788923_+	DNA adenine methylase	F1BUN1	Cronobacter_phage	3.2e-146	93.2
AXO45773.1\|2788919_2789132_+	hypothetical protein	NA	NA	NA	NA
AXO45774.1\|2789100_2791149_+	replication endonuclease	F1BUM9	Cronobacter_phage	7.3e-306	76.3
AXO45775.1\|2791270_2791477_+	hypothetical protein	NA	NA	NA	NA
AXO45776.1\|2791450_2791774_-	transcriptional regulator	F1BUM8	Cronobacter_phage	3.3e-48	88.6
AXO45777.1\|2791770_2792823_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	6.2e-160	79.2
AXO45778.1\|2792819_2794595_-\|terminase	terminase	F1BUM5	Cronobacter_phage	2.8e-290	82.8
AXO45779.1\|2794767_2795562_+\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	3.8e-69	54.9
AXO45780.1\|2795621_2796644_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.6e-152	79.1
AXO45781.1\|2796646_2797348_+\|terminase	terminase	F1BUM0	Cronobacter_phage	3.3e-85	66.8
AXO45782.1\|2797446_2797899_+\|head	head completion protein	F1BUL8	Cronobacter_phage	2.2e-58	77.3
AXO45783.1\|2797895_2798402_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	2.8e-65	69.1
AXO45784.1\|2798398_2799106_+	hypothetical protein	F1BUL6	Cronobacter_phage	2.6e-101	77.8
AXO45785.1\|2799102_2800230_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	2.5e-175	82.9
AXO45786.1\|2800226_2800682_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	5.4e-60	73.5
AXO45787.1\|2800691_2800979_+\|holin	holin	C7BGD7	Burkholderia_phage	2.1e-14	51.8
AXO45788.1\|2800975_2801317_+	M15 family peptidase	F1BUL3	Cronobacter_phage	3.2e-49	89.1
AXO45789.1\|2801316_2801685_+	hypothetical protein	F1BUL2	Cronobacter_phage	4.7e-22	53.3
AXO45790.1\|2801581_2801821_+	hypothetical protein	F1BUL1	Cronobacter_phage	4.2e-16	56.6
AXO45791.1\|2801804_2802065_+	hypothetical protein	A5X9I7	Aeromonas_virus	2.8e-21	62.8
AXO45792.1\|2802252_2804565_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	2.8e-213	56.3
AXO45793.1\|2804561_2804891_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	4.6e-37	72.5
AXO45794.1\|2804887_2806072_+	hypothetical protein	F1BUK6	Cronobacter_phage	1.2e-175	78.5
AXO45795.1\|2806064_2806652_+	hypothetical protein	F1BUK5	Cronobacter_phage	9.9e-91	80.5
AXO45796.1\|2806661_2809118_+\|tail	phage tail protein	F1BUK3	Cronobacter_phage	1.5e-172	57.1
AXO45797.1\|2809119_2809554_+\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	4.0e-20	61.5
AXO45798.1\|2809543_2810269_+	hypothetical protein	F1BUK1	Cronobacter_phage	1.2e-61	51.0
AXO45799.1\|2810240_2810789_+	hypothetical protein	F1BUJ9	Cronobacter_phage	1.1e-62	72.9
AXO45800.1\|2810791_2812468_+	hypothetical protein	F1BUJ7	Cronobacter_phage	6.3e-207	63.7
AXO45801.1\|2812633_2812894_+	hypothetical protein	NA	NA	NA	NA
AXO45802.1\|2813311_2813890_+	hypothetical protein	NA	NA	NA	NA
AXO47535.1\|2814220_2815642_+	DUF4102 domain-containing protein	H7BV31	unidentified_phage	3.9e-08	28.0
2813991:2814040	attR	NA	NA	NA	NA
AXO47536.1\|2816004_2816364_+	hypothetical protein	NA	NA	NA	NA
AXO45803.1\|2816506_2816716_+	DNA-binding protein	NA	NA	NA	NA
AXO45804.1\|2816724_2817504_+	hypothetical protein	Q8HA02	Enterobacteria_phage	9.6e-41	51.5
AXO47537.1\|2817778_2818378_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
AXO45805.1\|2818343_2818556_+	hypothetical protein	A0A2H4JFH8	uncultured_Caudovirales_phage	4.2e-23	95.1
AXO45806.1\|2818548_2818776_+	aminotransferase	A0A2H4JBA1	uncultured_Caudovirales_phage	1.7e-27	86.5
AXO45807.1\|2818772_2819141_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	1.3e-61	99.2
AXO45808.1\|2819137_2820502_+	hypothetical protein	A0A2H4JFA4	uncultured_Caudovirales_phage	2.0e-259	97.1
AXO45809.1\|2820855_2821092_+	hypothetical protein	NA	NA	NA	NA
AXO45810.1\|2821133_2821907_-	hypothetical protein	NA	NA	NA	NA
AXO45811.1\|2822165_2823332_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	1.5e-215	99.5
AXO45812.1\|2823383_2823944_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	5.9e-101	98.9
AXO47538.1\|2823954_2825181_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	2.1e-236	98.3
AXO45813.1\|2825177_2825516_+\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	2.4e-57	98.2
AXO45814.1\|2825512_2825806_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	4.7e-49	97.9
AXO45815.1\|2825805_2826249_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	4.4e-83	97.3
AXO45816.1\|2826521_2826878_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	4.6e-59	95.8
AXO45817.1\|2826861_2828523_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	97.6
AXO47539.1\|2828555_2829149_+\|tail	tail assembly protein	F1C572	Cronobacter_phage	5.9e-51	51.8
AXO45818.1\|2829515_2830055_-	NYN domain-containing protein	NA	NA	NA	NA
AXO45819.1\|2830363_2830870_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
AXO45820.1\|2830970_2832815_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
AXO45821.1\|2832967_2834713_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.4e-76	39.0
AXO45822.1\|2834828_2835044_-	30S ribosomal protein S21	NA	NA	NA	NA
AXO45823.1\|2835280_2836294_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-108	58.9

DBSCAN-SWA_6

3049120 : 3056958

Pseudomonas_phage(16.67%)

transposase,tRNA,integrase

attL 3052097:3052111|attR 3056625:3056639

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO46011.1\|3049120_3050218_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	3.1e-05	39.0
AXO46012.1\|3050228_3051746_+\|tRNA	lysine--tRNA ligase	A0A2K9L3L6	Tupanvirus	7.7e-87	37.5
AXO46013.1\|3051794_3052337_-	isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
3052097:3052111	attL	NA	NA	NA	NA
AXO46014.1\|3052500_3053241_+	LysM peptidoglycan-binding domain-containing protein	A0A7K9	Microcystis_virus	2.2e-10	35.7
AXO46015.1\|3053529_3055131_+\|integrase	site-specific integrase	A0A059XK29	uncultured_phage	7.3e-11	26.2
AXO46016.1\|3055123_3055783_+	DUF4145 domain-containing protein	M1PSB6	Streptococcus_phage	3.6e-33	33.9
AXO46017.1\|3055810_3056958_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	4.1e-149	93.7
3056625:3056639	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3286820 : 3297785

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO47554.1\|3286820_3289154_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2
AXO46212.1\|3289168_3289489_-	hypothetical protein	NA	NA	NA	NA
AXO46213.1\|3289485_3289713_-	hypothetical protein	NA	NA	NA	NA
AXO46214.1\|3289709_3290267_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	2.9e-31	67.6
AXO46215.1\|3290263_3290530_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.1e-28	70.5
AXO46216.1\|3291073_3291805_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	3.9e-68	58.6
AXO46217.1\|3291801_3292065_+	hypothetical protein	Q7M294	Enterobacteria_phage	1.6e-19	58.0
AXO46218.1\|3292061_3292628_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	8.7e-60	65.4
AXO46219.1\|3293015_3293660_-	hypothetical protein	NA	NA	NA	NA
AXO46220.1\|3293656_3294769_-	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	6.4e-14	27.2
AXO46221.1\|3294768_3295971_-	DUF4102 domain-containing protein	A0A1B5FPC6	Escherichia_phage	1.3e-105	49.4
AXO46222.1\|3296451_3297297_+	hypothetical protein	NA	NA	NA	NA
AXO46223.1\|3297578_3297785_+	AlpA family transcriptional regulator	A0A0R6PGY4	Moraxella_phage	8.5e-05	41.1

DBSCAN-SWA_8

3820431 : 3826710

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO46662.1\|3820431_3821823_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.7e-19	32.8
AXO46663.1\|3821996_3822893_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	2.0e-42	41.9
AXO46664.1\|3823251_3824337_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	7.4e-100	52.0
AXO46665.1\|3824336_3825236_+	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	2.0e-29	36.5
AXO46666.1\|3825288_3826167_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.9e-107	64.8
AXO46667.1\|3826170_3826710_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	9.8e-53	56.9

DBSCAN-SWA_9

3999451 : 4082831

Enterobacteria_phage(26.92%)

capsid,protease,portal,tail,transposase,tRNA,terminase,head,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO46816.1\|3999451_4001185_-\|tRNA	arginine--tRNA ligase	A0A1V0SIS8	Klosneuvirus	2.0e-86	36.8
AXO46817.1\|4001423_4001984_+	VOC family protein	NA	NA	NA	NA
AXO46818.1\|4002062_4002806_+	copper homeostasis protein CutC	NA	NA	NA	NA
AXO46819.1\|4002786_4003026_+	hypothetical protein	NA	NA	NA	NA
AXO46820.1\|4002980_4003952_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
AXO46821.1\|4003948_4004692_-	carboxy-S-adenosyl-L-methionine synthase CmoA	A0A1S6L2V9	Erwinia_phage	6.1e-29	30.2
AXO46822.1\|4004733_4005129_-	hypothetical protein	NA	NA	NA	NA
AXO46823.1\|4005180_4005954_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	5.0e-58	81.1
AXO46824.1\|4005932_4007246_-	DUF3596 domain-containing protein	Q8W658	Enterobacteria_phage	2.2e-223	86.5
AXO46825.1\|4007301_4007538_-	excisionase	Q8W657	Enterobacteria_phage	1.4e-35	84.6
AXO46826.1\|4007545_4007782_-	hypothetical protein	NA	NA	NA	NA
AXO46827.1\|4007774_4008107_-	hypothetical protein	NA	NA	NA	NA
AXO46828.1\|4008099_4008456_-	hypothetical protein	NA	NA	NA	NA
AXO46829.1\|4008445_4008874_-	hypothetical protein	NA	NA	NA	NA
AXO46830.1\|4008866_4009127_-	hypothetical protein	NA	NA	NA	NA
AXO46831.1\|4009126_4009990_-	ORF6N domain-containing protein	F1C5A3	Cronobacter_phage	5.1e-128	78.2
AXO46832.1\|4010002_4010506_-	hypothetical protein	F1C5A2	Cronobacter_phage	7.0e-53	61.7
AXO46833.1\|4010505_4010859_-	hypothetical protein	A0A1B5FPB3	Escherichia_phage	1.0e-37	70.0
AXO46834.1\|4010965_4011352_-	S24 family peptidase	F1C5A0	Cronobacter_phage	2.3e-40	63.2
AXO46835.1\|4011424_4011718_-	hypothetical protein	NA	NA	NA	NA
AXO46836.1\|4011904_4012564_-	LexA family transcriptional regulator	C6ZR47	Salmonella_phage	4.2e-90	68.3
AXO46837.1\|4012674_4012890_+	XRE family transcriptional regulator	NA	NA	NA	NA
AXO46838.1\|4012945_4014093_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	4.1e-149	93.7
AXO46839.1\|4014629_4015466_+	antitermination protein	A0A1B5FPA5	Escherichia_phage	1.1e-119	77.8
AXO46840.1\|4015577_4016498_-	hypothetical protein	A0A1B5FPA3	Escherichia_phage	6.6e-57	74.2
AXO46841.1\|4016642_4017029_+	hypothetical protein	A0A192Y8P2	Salmonella_phage	7.3e-58	93.8
AXO46842.1\|4017015_4017297_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.7e-19	46.2
AXO46843.1\|4017296_4017839_+	hypothetical protein	A0A0U2S643	Escherichia_phage	2.2e-76	72.1
AXO46844.1\|4017835_4018108_+	hypothetical protein	G8C7W1	Escherichia_phage	2.9e-21	68.2
AXO46845.1\|4018064_4018259_+	hypothetical protein	K7PM01	Enterobacterial_phage	9.1e-17	90.7
AXO46846.1\|4018396_4018579_+	hypothetical protein	NA	NA	NA	NA
AXO47578.1\|4019045_4019621_+	DUF1983 domain-containing protein	G8C7Q4	Escherichia_phage	7.8e-32	49.4
AXO46847.1\|4019632_4021090_+	glycosyltransferase family 2 protein	K7PKP3	Enterobacterial_phage	3.0e-269	89.9
AXO46848.1\|4021101_4021437_+	hypothetical protein	NA	NA	NA	NA
AXO46849.1\|4021390_4021648_-	hypothetical protein	K7P7V5	Enterobacteria_phage	9.2e-33	96.3
AXO46850.1\|4021813_4022404_+	hypothetical protein	K7PGW6	Enterobacterial_phage	1.8e-95	81.1
AXO46851.1\|4022403_4022754_+	HNH endonuclease	K7PHK9	Enterobacteria_phage	9.2e-52	81.9
AXO46852.1\|4022910_4023384_+\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	7.7e-86	99.4
AXO46853.1\|4023383_4025120_+\|terminase	terminase large subunit	K7PKT2	Enterobacteria_phage	0.0e+00	100.0
AXO46854.1\|4025119_4026424_+\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	4.7e-234	93.3
AXO46855.1\|4026437_4027286_+\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	7.8e-137	90.7
AXO46856.1\|4027295_4028507_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	9.5e-197	87.9
AXO46857.1\|4028550_4028877_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	1.3e-47	81.5
AXO46858.1\|4028885_4029224_+\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	6.0e-40	73.2
AXO46859.1\|4029220_4029670_+	HK97 gp10 family phage protein	K7P6X4	Enterobacteria_phage	4.2e-73	98.0
AXO46860.1\|4029666_4030014_+	DUF3168 domain-containing protein	Q9MCS8	Enterobacteria_phage	3.8e-58	99.1
AXO46861.1\|4030073_4030517_+	hypothetical protein	K7PHL2	Enterobacterial_phage	4.6e-72	93.8
AXO46862.1\|4030525_4030909_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	4.4e-63	93.7
AXO46863.1\|4030917_4031196_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	1.8e-42	95.7
AXO46864.1\|4031242_4031608_+	hypothetical protein	NA	NA	NA	NA
AXO46865.1\|4031669_4035161_+\|tail	phage tail tape measure protein	A0A2H4JHR1	uncultured_Caudovirales_phage	0.0e+00	85.8
AXO46866.1\|4035163_4035502_+\|tail	phage tail protein	K7PKL8	Enterobacterial_phage	7.3e-38	59.8
AXO46867.1\|4035498_4036257_+\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	2.3e-95	63.6
AXO46868.1\|4036259_4036970_+	peptidase P60	F1C573	Cronobacter_phage	5.6e-96	69.4
AXO46869.1\|4036969_4037557_+\|tail	tail assembly protein	A0A1P8DTG7	Proteus_phage	6.1e-48	47.4
AXO46870.1\|4037609_4041491_+	DUF1983 domain-containing protein	Q9MCR7	Enterobacteria_phage	0.0e+00	60.0
AXO46871.1\|4041492_4042458_+	hypothetical protein	G1CSU0	Cronobacter_virus	6.9e-57	39.6
AXO46872.1\|4042517_4043831_+\|tail	phage tail protein	A0A220NRP2	Escherichia_phage	3.2e-129	59.4
AXO46873.1\|4043926_4044193_-	DinI family protein	K7PKM2	Enterobacterial_phage	2.4e-36	88.6
AXO46874.1\|4044557_4045124_-	hydrolase	NA	NA	NA	NA
AXO46875.1\|4045387_4047160_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
AXO46876.1\|4047161_4047605_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
AXO46877.1\|4047632_4048373_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
AXO46878.1\|4048407_4048929_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.6e-10	35.1
AXO46879.1\|4049009_4049624_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
AXO46880.1\|4049632_4050643_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	2.4e-07	29.9
AXO46881.1\|4050695_4051481_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
AXO46882.1\|4051477_4052233_-	zinc ABC transporter ATP-binding protein ZnuC	W6JKT0	Anomala_cuprea_entomopoxvirus	8.8e-15	29.8
AXO46883.1\|4052295_4053255_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
AXO46884.1\|4053270_4054590_+	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	1.2e-14	40.9
AXO46885.1\|4054707_4055679_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
AXO46886.1\|4055722_4057165_-	pyruvate kinase	NA	NA	NA	NA
AXO46887.1\|4057279_4058149_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AXO46888.1\|4058505_4059981_+	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	6.0e-76	36.2
AXO46889.1\|4060214_4062026_+	phosphogluconate dehydratase	NA	NA	NA	NA
AXO46890.1\|4062065_4062707_+	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA
AXO46891.1\|4062781_4063960_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
AXO46892.1\|4064131_4064782_+	tellurite resistance TerB family protein	NA	NA	NA	NA
AXO46893.1\|4066913_4067576_-	exodeoxyribonuclease X	NA	NA	NA	NA
AXO46894.1\|4067600_4068251_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
AXO46895.1\|4068362_4068593_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	7.0e-16	61.8
AXO46896.1\|4068730_4069102_+	CopC domain-containing protein YobA	NA	NA	NA	NA
AXO46897.1\|4069103_4069973_+	hypothetical protein	NA	NA	NA	NA
AXO46898.1\|4069989_4070328_+	DUF2511 domain-containing protein	NA	NA	NA	NA
AXO46899.1\|4070453_4070651_-	hypothetical protein	NA	NA	NA	NA
AXO46900.1\|4070696_4071677_-	DUF535 domain-containing protein	NA	NA	NA	NA
AXO46901.1\|4071844_4072489_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	1.9e-55	49.8
AXO46902.1\|4072523_4072763_-	DUF1480 family protein	NA	NA	NA	NA
AXO46903.1\|4072869_4074333_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AXO46904.1\|4074389_4077023_-	MCE family protein	NA	NA	NA	NA
AXO47579.1\|4076991_4078275_-	paraquat-inducible protein A	NA	NA	NA	NA
AXO46905.1\|4078407_4078905_+	GAF domain-containing protein	NA	NA	NA	NA
AXO46906.1\|4079001_4079688_+	RNA chaperone ProQ	NA	NA	NA	NA
AXO46907.1\|4079707_4081756_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.3e-81	32.6
AXO46908.1\|4081949_4082831_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_10

4629710 : 4637251

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO47362.1\|4629710_4630565_+	benzoate transporter	M1I711	Paramecium_bursaria_Chlorella_virus	8.1e-25	33.2
AXO47363.1\|4630667_4630973_+	DUF1161 domain-containing protein	NA	NA	NA	NA
AXO47364.1\|4631103_4633542_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	4.9e-216	49.4
AXO47365.1\|4633552_4634170_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.0e-74	59.1
AXO47366.1\|4634171_4635026_+	dimethylsulfoxide reductase	A0A077SK59	Escherichia_phage	2.2e-22	34.6
AXO47367.1\|4635070_4635685_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	3.6e-27	34.2
AXO47368.1\|4635794_4636106_+	DNA damage-inducible SOS regulon protein	NA	NA	NA	NA
AXO47369.1\|4636220_4636535_-	nitroreductase	NA	NA	NA	NA
AXO47370.1\|4636573_4637251_-	type A chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	2.1e-76	62.6

DBSCAN-SWA_11

4654230 : 4722403

Salmonella_phage(33.33%)

tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO47384.1\|4654230_4655052_+\|protease	serine protease	NA	NA	NA	NA
AXO47385.1\|4655057_4655387_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
AXO47386.1\|4655373_4655736_-	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
AXO47387.1\|4657194_4658142_-	alcohol dehydrogenase	NA	NA	NA	NA
AXO47388.1\|4658134_4659169_-	flavin-dependent oxidoreductase	NA	NA	NA	NA
AXO47389.1\|4659376_4659724_+	HNH nuclease family protein	NA	NA	NA	NA
AXO47390.1\|4659791_4660238_-	hypothetical protein	NA	NA	NA	NA
AXO47391.1\|4660555_4661821_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.7e-204	81.3
AXO47392.1\|4661925_4662945_+	membrane dipeptidase	NA	NA	NA	NA
AXO47599.1\|4663083_4663155_+	pyrroloquinoline quinone precursor peptide PqqA	NA	NA	NA	NA
AXO47393.1\|4663210_4664128_+	pyrroloquinoline quinone biosynthesis protein PqqB	NA	NA	NA	NA
AXO47394.1\|4664130_4664886_+	pyrroloquinoline quinone biosynthesis protein PqqC	NA	NA	NA	NA
AXO47395.1\|4664888_4665167_+	pyrroloquinoline quinone biosynthesis peptide chaperone PqqD	NA	NA	NA	NA
AXO47396.1\|4665153_4666296_+	pyrroloquinoline quinone biosynthesis protein PqqE	NA	NA	NA	NA
AXO47397.1\|4666301_4668578_+	pyrroloquinoline quinone biosynthesis protein PqqF	NA	NA	NA	NA
AXO47398.1\|4668665_4671095_-	glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase	NA	NA	NA	NA
AXO47600.1\|4671441_4671861_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	6.7e-33	54.3
AXO47399.1\|4672186_4672387_+	hypothetical protein	NA	NA	NA	NA
AXO47400.1\|4672433_4673300_-	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA
AXO47401.1\|4673445_4675107_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	6.4e-10	61.9
AXO47402.1\|4675139_4675703_-	DNA endonuclease SmrA	NA	NA	NA	NA
AXO47403.1\|4676053_4676959_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXO47404.1\|4677134_4678445_+	amidohydrolase	NA	NA	NA	NA
AXO47405.1\|4679933_4681460_+	p-aminobenzoyl-glutamate transporter	NA	NA	NA	NA
AXO47406.1\|4682167_4682920_+	fumarate/nitrate reduction transcriptional regulator Fnr	NA	NA	NA	NA
AXO47407.1\|4683057_4684008_+	universal stress protein UspE	NA	NA	NA	NA
AXO47408.1\|4684048_4685158_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
AXO47409.1\|4685265_4686654_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA
AXO47410.1\|4686664_4688194_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
AXO47411.1\|4688729_4689674_+	DUF1471 domain-containing protein	NA	NA	NA	NA
AXO47412.1\|4689859_4691242_+	amino acid permease	NA	NA	NA	NA
AXO47413.1\|4691281_4692004_+	dihydromonapterin reductase	NA	NA	NA	NA
AXO47414.1\|4692000_4692336_-	GlpM family protein	NA	NA	NA	NA
AXO47415.1\|4692463_4693180_+	two-component system response regulator RstA	NA	NA	NA	NA
AXO47416.1\|4693570_4693990_+	anti-adapter protein IraM	Q20GJ2	Phage_258-320	3.7e-15	38.9
AXO47417.1\|4694377_4694596_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.5e-20	68.7
AXO47418.1\|4695073_4695301_+	hypothetical protein	NA	NA	NA	NA
AXO47419.1\|4695582_4696881_+	two-component system sensor histidine kinase RstB	W8CYF6	Bacillus_phage	8.0e-16	24.5
AXO47420.1\|4696955_4697885_+	DNA replication terminus site-binding protein	NA	NA	NA	NA
AXO47421.1\|4697885_4699280_-	class II fumarate hydratase	NA	NA	NA	NA
AXO47422.1\|4699462_4701109_-	fumarate hydratase	NA	NA	NA	NA
AXO47423.1\|4701308_4702484_+	mannose-6-phosphate isomerase	NA	NA	NA	NA
AXO47424.1\|4702583_4704110_+	DUF945 domain-containing protein	NA	NA	NA	NA
AXO47425.1\|4704210_4705239_-	Mal regulon transcriptional regulator MalI	NA	NA	NA	NA
AXO47426.1\|4705752_4706076_-	hypothetical protein	K7PGV5	Enterobacterial_phage	6.8e-25	53.3
AXO47427.1\|4706075_4706315_-	hypothetical protein	K7P7N3	Enterobacteria_phage	9.1e-27	72.2
AXO47428.1\|4706397_4707720_-\|tail	phage tail protein	G8C7R8	Escherichia_phage	1.0e-127	58.2
AXO47429.1\|4707778_4708012_-	cor protein	E4WL42	Enterobacteria_phage	3.9e-30	78.9
AXO47430.1\|4708790_4709105_-	hypothetical protein	A0A2P0WA17	Enterobacter_phage	1.5e-32	64.7
AXO47431.1\|4712904_4713438_-\|tail	tail assembly protein	H6WRW3	Salmonella_phage	4.0e-54	67.0
AXO47601.1\|4713380_4714100_-\|tail	phage tail protein	A0A1V0E5M9	Salmonella_phage	3.9e-121	82.7
AXO47432.1\|4714099_4714804_-\|tail	phage minor tail protein L	A0A1V0E5N2	Salmonella_phage	9.3e-136	98.7
AXO47433.1\|4714969_4715167_+	hypothetical protein	NA	NA	NA	NA
AXO47434.1\|4715322_4715670_-\|tail	phage tail protein	H6WRV8	Salmonella_phage	8.2e-61	95.7
AXO47435.1\|4716016_4719262_-	hypothetical protein	A0A125RNN2	Pseudomonas_phage	1.6e-118	41.0
AXO47436.1\|4719322_4719820_-	hypothetical protein	NA	NA	NA	NA
AXO47437.1\|4719930_4720680_-	hypothetical protein	A0A0P0ZD96	Stx2-converting_phage	1.4e-65	57.9
AXO47438.1\|4720748_4721462_-	hypothetical protein	H6WRU8	Salmonella_phage	8.8e-41	50.6
AXO47439.1\|4721451_4721619_-	Arc family DNA-binding protein	A0A077KAX5	Edwardsiella_phage	1.0e-08	63.8
AXO47440.1\|4721727_4722027_+	Arc family DNA-binding protein	H6WRU6	Salmonella_phage	3.1e-16	89.4
AXO47441.1\|4722181_4722403_-	hypothetical protein	K7PJU3	Enterobacteria_phage	4.2e-26	80.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP031566

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 8908

Pseudomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO47602.1\|1297_1558_-	TraK	NA	NA	NA	NA
AXO47603.1\|1547_2711_-	plasmid transfer ATPase TraJ	NA	NA	NA	NA
AXO47604.1\|2721_3501_-	conjugal transfer protein	NA	NA	NA	NA
AXO47605.1\|3497_3998_-	TraH	NA	NA	NA	NA
AXO47606.1\|4011_5991_-	hypothetical protein	NA	NA	NA	NA
AXO47607.1\|5977_6295_-	NikA	NA	NA	NA	NA
AXO47608.1\|6570_6936_+	MobC	NA	NA	NA	NA
AXO47609.1\|7436_7973_-	hypothetical protein	NA	NA	NA	NA
AXO47610.1\|8105_8417_-	hypothetical protein	NA	NA	NA	NA
AXO47611.1\|8473_8908_-	single-stranded DNA-binding protein	A0A0U4K5C0	Pseudomonas_phage	1.3e-26	48.0

DBSCAN-SWA_2

12575 : 13400

Marinomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO47619.1\|12575_13400_-	DUF4942 domain-containing protein	I6RTT5	Marinomonas_phage	2.7e-17	29.9

DBSCAN-SWA_3

18562 : 45620

Enterobacteria_phage(20.0%)

integrase,protease,transposase

attL 42063:42076|attR 50345:50358

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO47673.1\|18562_19537_-	recombinase	A0A0A7NPX4	Enterobacteria_phage	4.6e-85	52.0
AXO47628.1\|19777_20518_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	9.5e-22	51.6
AXO47674.1\|20536_20740_-	hypothetical protein	NA	NA	NA	NA
AXO47629.1\|20781_21267_-	hypothetical protein	NA	NA	NA	NA
AXO47630.1\|21263_21851_-	restriction endonuclease	NA	NA	NA	NA
AXO47631.1\|21843_22092_-	XRE family transcriptional regulator	A0A248SLB9	Klebsiella_phage	1.6e-10	53.0
AXO47632.1\|22078_22549_-	hypothetical protein	NA	NA	NA	NA
AXO47633.1\|22689_23235_+	hypothetical protein	NA	NA	NA	NA
AXO47634.1\|23387_23795_-	hypothetical protein	NA	NA	NA	NA
AXO47635.1\|23796_24375_-	hypothetical protein	NA	NA	NA	NA
AXO47636.1\|24352_24709_-	hypothetical protein	NA	NA	NA	NA
AXO47637.1\|25236_26511_+	RelB antitoxin	NA	NA	NA	NA
AXO47638.1\|26528_26786_+	XRE family transcriptional regulator	NA	NA	NA	NA
AXO47639.1\|26786_27470_+	hypothetical protein	NA	NA	NA	NA
AXO47640.1\|27514_27733_+	hypothetical protein	NA	NA	NA	NA
AXO47641.1\|27735_27945_+	hypothetical protein	NA	NA	NA	NA
AXO47642.1\|29319_29721_-	peptidase	A0A1W6JNS2	Morganella_phage	1.1e-29	55.3
AXO47643.1\|29845_30310_-	mRNA interferase PemK	NA	NA	NA	NA
AXO47644.1\|30528_31182_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AXO47645.1\|31261_31645_+	DUF1496 domain-containing protein	NA	NA	NA	NA
AXO47646.1\|31749_32145_+	lytic transglycosylase	NA	NA	NA	NA
AXO47647.1\|33460_34411_+	DsbC family protein	NA	NA	NA	NA
AXO47648.1\|34423_36511_+	conjugal transfer protein TrbC	NA	NA	NA	NA
AXO47649.1\|37092_37698_-	DNA resolvase	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3
AXO47650.1\|37792_40690_+\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	2.5e-182	37.8
AXO47651.1\|40797_41559_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AXO47652.1\|41579_42440_-	class A extended-spectrum beta-lactamase SHV-30	A0A077SL40	Escherichia_phage	1.7e-155	99.3
42063:42076	attL	NA	NA	NA	NA
AXO47653.1\|42605_43529_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	9.6e-173	97.4
AXO47675.1\|43713_44247_-	aminoglycoside nucleotidyltransferase ANT(2'')-Ia	NA	NA	NA	NA
AXO47654.1\|44395_45409_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AXO47655.1\|45347_45620_+\|transposase	transposase	NA	NA	NA	NA
50345:50358	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. CP031570

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

100081 : 117736

Escherichia_phage(50.0%)

transposase,integrase

attL 105765:105824|attR 117861:117983

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO48228.1\|100081_101086_-\|transposase	IS110 family transposase IS4321	NA	NA	NA	NA
AXO48229.1\|101164_101599_-	mercuric resistance operon regulatory protein	NA	NA	NA	NA
AXO48230.1\|101670_102021_+	mercuric ion transporter MerT	NA	NA	NA	NA
AXO48231.1\|102034_102310_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
AXO48299.1\|102345_102768_+	mercury transporter MerC	NA	NA	NA	NA
AXO48232.1\|102819_104514_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
AXO48233.1\|104531_104894_+	transcriptional regulator	NA	NA	NA	NA
AXO48234.1\|104890_105127_+	mercury resistance protein	NA	NA	NA	NA
AXO48235.1\|105123_105831_+	EAL domain-containing protein	NA	NA	NA	NA
105765:105824	attL	NA	NA	NA	NA
AXO48236.1\|105869_107174_+\|integrase	integrase	NA	NA	NA	NA
AXO48237.1\|107220_107925_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	9.0e-139	99.6
AXO48238.1\|107870_108128_-	hypothetical protein	NA	NA	NA	NA
AXO48239.1\|108066_109080_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
AXO48240.1\|109246_110047_+	subclass B1 metallo-beta-lactamase VIM-1	NA	NA	NA	NA
AXO48241.1\|110140_110599_+	aminoglycoside N-acetyltransferase AAC(6')-Il	NA	NA	NA	NA
AXO48242.1\|110741_111215_+	trimethoprim-resistant dihydrofolate reductase DfrA1	G3MBI7	Bacillus_virus	3.7e-19	32.1
AXO48243.1\|111307_112099_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
AXO48244.1\|112928_113633_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXO48245.1\|113754_114660_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
AXO48246.1\|114656_115895_+	MFS transporter	NA	NA	NA	NA
AXO48247.1\|115894_116479_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AXO48248.1\|116424_116781_+	hypothetical protein	NA	NA	NA	NA
AXO48249.1\|116971_117736_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
117861:117983	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. CP031568

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1620 : 42330

Escherichia_phage(52.63%)

integrase,transposase

attL 9057:9116|attR 30742:32095

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO47831.1\|1620_2325_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXO47832.1\|2468_3110_-	type A-2 chloramphenicol O-acetyltransferase CatII	G3CFL0	Escherichia_phage	7.3e-55	45.9
AXO47833.1\|3259_3760_-	hypothetical protein	NA	NA	NA	NA
AXO47834.1\|3839_4544_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXO47835.1\|6177_7080_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
AXO47836.1\|7117_7351_-	hypothetical protein	NA	NA	NA	NA
AXO47837.1\|7341_8103_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AXO47838.1\|8123_8984_-	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
AXO47839.1\|8947_9130_-	hypothetical protein	NA	NA	NA	NA
9057:9116	attL	NA	NA	NA	NA
AXO47840.1\|9120_9825_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXO47841.1\|9858_10350_-	hypothetical protein	NA	NA	NA	NA
AXO47842.1\|10455_11193_+	resolvase	NA	NA	NA	NA
AXO47843.1\|11189_11414_+	hypothetical protein	NA	NA	NA	NA
AXO47844.1\|11624_13118_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AXO47845.1\|13148_13400_+	hypothetical protein	NA	NA	NA	NA
AXO47846.1\|13293_13596_-	phosphoglucosamine mutase	NA	NA	NA	NA
AXO47847.1\|13682_14498_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	2.7e-09	27.6
AXO47848.1\|14827_15004_+	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
AXO47849.1\|15185_16190_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
AXO47850.1\|16268_19235_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.9
AXO47851.1\|19355_20060_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXO47852.1\|20135_20636_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXO47853.1\|20654_20834_+	hypothetical protein	NA	NA	NA	NA
AXO47854.1\|20763_21603_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AXO47855.1\|21596_21944_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AXO47856.1\|23253_23685_-	DUF4440 domain-containing protein	NA	NA	NA	NA
AXO47857.1\|24047_24461_-	NAD(+)--rifampin ADP-ribosyltransferase	NA	NA	NA	NA
AXO47965.1\|24588_25398_-	AAC(3)-II family aminoglycoside N-acetyltransferase	O64018	Bacillus_phage	1.2e-17	29.3
AXO47858.1\|25639_26995_-\|transposase	IS1380-like element IS1247 family transposase	A0A1X9I6F6	Streptococcus_phage	2.2e-45	29.7
AXO47859.1\|27482_28064_-	aminoglycoside N-acetyltransferase AAC(6')-IIc	NA	NA	NA	NA
AXO47860.1\|28226_29240_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AXO47861.1\|29507_29999_+	hypothetical protein	NA	NA	NA	NA
AXO47862.1\|30032_30737_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXO47863.1\|31046_31940_+	hypothetical protein	NA	NA	NA	NA
AXO47864.1\|32111_32342_+	hypothetical protein	NA	NA	NA	NA
30742:32095	attR	NA	NA	NA	NA
AXO47865.1\|32520_32841_+	hypothetical protein	NA	NA	NA	NA
AXO47866.1\|32937_33156_+	hypothetical protein	NA	NA	NA	NA
AXO47867.1\|33357_33669_+	DUF957 domain-containing protein	NA	NA	NA	NA
AXO47868.1\|33673_34165_+	DUF3085 domain-containing protein	NA	NA	NA	NA
AXO47869.1\|34244_34538_+	hypothetical protein	I7B2L9	Escherichia_phage	4.1e-05	38.6
AXO47870.1\|34717_34921_+	hypothetical protein	NA	NA	NA	NA
AXO47871.1\|34975_35200_+	hypothetical protein	NA	NA	NA	NA
AXO47872.1\|35239_35440_+	hypothetical protein	NA	NA	NA	NA
AXO47873.1\|35662_35974_+	hypothetical protein	NA	NA	NA	NA
AXO47874.1\|36349_36631_+	hypothetical protein	NA	NA	NA	NA
AXO47875.1\|36847_37453_+	hypothetical protein	NA	NA	NA	NA
AXO47876.1\|37785_39154_+\|transposase	IS3-like element ISKpn8 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	9.4e-108	95.5
AXO47877.1\|39329_40670_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
AXO47878.1\|41091_42330_+\|transposase	IS110 family transposase	A0A0U3ULR1	Bacillus_phage	2.5e-11	23.1

DBSCAN-SWA_2

85482 : 107781

Escherichia_phage(42.86%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXO47923.1\|85482_86397_+\|transposase	IS5 family transposase	A0A077SK28	Escherichia_phage	3.6e-172	98.4
AXO47924.1\|86435_86564_-	ABC transporter	NA	NA	NA	NA
AXO47925.1\|86562_86880_+	hypothetical protein	NA	NA	NA	NA
AXO47926.1\|86930_87338_-	hypothetical protein	NA	NA	NA	NA
AXO47927.1\|87795_88467_-\|protease	serine protease	NA	NA	NA	NA
AXO47928.1\|88511_88817_-	hypothetical protein	NA	NA	NA	NA
AXO47929.1\|89369_90773_+\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
AXO47930.1\|90801_91434_-	hypothetical protein	NA	NA	NA	NA
AXO47931.1\|91487_91910_+\|transposase	transposase	A0A1B0VFY5	Salmonella_phage	6.7e-65	97.6
AXO47968.1\|91956_92880_+\|transposase	IS5-like element IS903B family transposase	Q9MCT5	Escherichia_phage	1.1e-176	99.3
AXO47932.1\|93286_93802_-	nuclease	A0A1X6WF84	Pacmanvirus	2.1e-07	38.6
AXO47933.1\|94016_95444_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.4e-100	52.3
AXO47934.1\|95694_97014_+	DUF1173 family protein	NA	NA	NA	NA
AXO47935.1\|97026_97230_+	hypothetical protein	NA	NA	NA	NA
AXO47936.1\|97293_98499_-	ATP/GTP-binding protein	NA	NA	NA	NA
AXO47937.1\|98495_99314_-	DUF4942 domain-containing protein	NA	NA	NA	NA
AXO47938.1\|99779_100052_-	transcriptional repressor RcnR	NA	NA	NA	NA
AXO47969.1\|100172_101288_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
AXO47939.1\|101545_101980_-	copper-binding protein	NA	NA	NA	NA
AXO47940.1\|102197_103544_-	sensor histidine kinase	W8CYF6	Bacillus_phage	8.8e-18	26.6
AXO47941.1\|104738_106358_+	phosphoethanolamine--lipid A transferase	NA	NA	NA	NA
AXO47942.1\|106434_106911_+	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
AXO47943.1\|107076_107781_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_3

124260 : 132120

Escherichia_phage(50.0%)

integrase,transposase

attL 124147:124206|attR 129276:129388

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
124147:124206	attL	NA	NA	NA	NA
AXO47959.1\|124260_125295_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.1e-71	45.5
AXO47960.1\|125331_126036_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXO47971.1\|126195_127704_+\|transposase	IS21-like element ISCfr8 family transposase	A0A2L1IVA1	Escherichia_phage	9.9e-26	32.7
AXO47961.1\|127690_128431_+	AAA family ATPase	U5N3V8	Enterobacteria_phage	4.4e-43	41.7
AXO47962.1\|128658_129213_-	aminoglycoside N-acetyltransferase AAC(6')-Ib3	NA	NA	NA	NA
AXO47963.1\|129816_130521_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
129276:129388	attR	NA	NA	NA	NA
AXO47964.1\|131010_132120_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	2.8e-33	30.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage