CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP030865	Micromonospora sp. B006 chromosome, complete genome	8 crisprs	csa3,c2c9_V-U4,cas3,RT,PrimPol,DEDDh,WYL,DinG,cas4	5	5	0	0

Cas Category Instructions

Results visualization

1. CP030865

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CRISPR-Cas detection and classification

Crispr_ID: CP030865_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030865_1

331337-331429

TypeV-U4

Consensus_repeat	Method
TCCGCGTGGCTGGATGCCGCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030865_1

>merge|CP030865|1|331337-331429|CRISPRCasFinder
TCCGCGTGGCTGGATGCCGCCACCTCGGCGAACTGGTGCAGTCCACCGCCGGTTCGGCGTAGTGGTCGTATCCGCGTGGCTGCATGCCGCCAC

>CP030865|1|1|331337-331429|CRISPRCasFinder
TCCGCGTGGCTGGATGCCGCCAC	CTCGGCGAACTGGTGCAGTCCACCGCCGGTTCGGCGTAGTGGTCGTA
TCCGCGTGGCTGCATGCCGCCAC

Protein	Signature genes	Signature genes Name	Protein_function
CP030865.1\|AXO32643.1\|326942_329036_-\|protease-II	unknown	unknown	gnl\|CDD\|224684
CP030865.1\|AXO32636.1\|320010_321033_+\|phosphoserine-phosphatase-rsbX	unknown	unknown	gnl\|CDD\|340411
CP030865.1\|AXO32653.1\|343841_344489_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366010
CP030865.1\|AXO32644.1\|329127_330795_+\|glycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|366708
CP030865.1\|AXO32649.1\|339417_340344_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
CP030865.1\|AXO32654.1\|344488_345064_+\|thiol:disulfide-oxidoreductase-related-to-ResA	unknown	unknown	gnl\|CDD\|239264
CP030865.1\|AXO32652.1\|342500_343838_+\|glutamate-1-semialdehyde-aminotransferase	unknown	unknown	gnl\|CDD\|234607
CP030865.1\|AXO32640.1\|325045_325612_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274424
CP030865.1\|AXO32635.1\|319603_320023_+\|anti-sigma-B-factor-RsbT	unknown	unknown	gnl\|CDD\|340411
CP030865.1\|AXO32639.1\|324225_325014_-\|transcriptional-regulator-AraC-family	unknown	unknown	gnl\|CDD\|225117
CP030865.1\|AXO32642.1\|325947_326895_+\|threonine-dehydratase	unknown	unknown	gnl\|CDD\|107205
CP030865.1\|AXO32638.1\|322378_323917_+\|regulatory-protein	unknown	unknown	gnl\|CDD\|369272
CP030865.1\|AXO32641.1\|325781_325925_-\|hypothetical-protein	unknown	unknown	unknown
CP030865.1\|AXO32648.1\|338821_339325_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224427
CP030865.1\|AXO32637.1\|321029_322376_+\|putative-SigmaB-asociated-two-component-system-sensor-protein	unknown	unknown	gnl\|CDD\|223715
CP030865.1\|AXO32650.1\|340340_341933_+\|tetronasin-transport-integral-membrane-protein-ABC-transporter	unknown	unknown	gnl\|CDD\|226089
CP030865.1\|AXO32647.1\|338259_338817_+\|two-component-regulator	unknown	unknown	gnl\|CDD\|381147
CP030865.1\|AXO32651.1\|342023_342356_-\|anti-sigma-F-factor-antagonist-(spoIIAA-2)/anti-sigma-b-factor-antagonist-RsbV	unknown	unknown	gnl\|CDD\|132914
CP030865.1\|AXO32646.1\|333898_338263_+\|putative-SigmaB-asociated-two-component-system-sensor-protein	unknown	unknown	gnl\|CDD\|237951
CP030865.1\|AXO32645.1\|331666_333730_-\|serine-phosphatase-RsbU	unknown	unknown	gnl\|CDD\|369272

Protein	Function_ID	Function_description	E-value
CP030865.1\|AXO32643.1\|326942_329036_-\|protease-II	gnl\|CDD\|224684	COG1770, PtrB, Protease II [Amino acid transport and metabolism].	0
CP030865.1\|AXO32636.1\|320010_321033_+\|phosphoserine-phosphatase-rsbX	gnl\|CDD\|340411	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains. This family includes the histidine kinase-like ATPase (HATPase) domain of Bacillus subtilis serine/threonine-protein kinase RsbT, a component of the stressosome signaling complex of Bacillus subtilis. The stressosome is formed from multiple copies of three proteins, a sensor protein RsbR, a scaffold protein RsbS, and RsbT, and responds to environmental changes by initiating a protein partner switching cascade. Stress perception increases the phosphorylation of RsbR and RsbS, by RsbT. Subsequent dissociation of RsbT from the stressosome activates the sigma-B cascade, leading to the release of the alternative sigma factor, sigma-B.	3.17655e-24
CP030865.1\|AXO32653.1\|343841_344489_+\|hypothetical-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	2.96522e-40
CP030865.1\|AXO32644.1\|329127_330795_+\|glycolate-dehydrogenase	gnl\|CDD\|366708	pfam01565, FAD_binding_4, FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.	3.85932e-17
CP030865.1\|AXO32649.1\|339417_340344_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	4.95402e-82
CP030865.1\|AXO32654.1\|344488_345064_+\|thiol:disulfide-oxidoreductase-related-to-ResA	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	6.37558e-34
CP030865.1\|AXO32652.1\|342500_343838_+\|glutamate-1-semialdehyde-aminotransferase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
CP030865.1\|AXO32640.1\|325045_325612_+\|hypothetical-protein	gnl\|CDD\|274424	TIGR03086, TIGR03086, TIGR03086 family protein. This family, like pfam07398 and TIGRFAMs family TIGR030834, belongs to the larger set of probable enzymes defined in family TIGR03083. Members are found primarily in the Actinobacteria (Mycobacterium, Streptomyces, etc.). The family is uncharacterized.	2.76212e-28
CP030865.1\|AXO32635.1\|319603_320023_+\|anti-sigma-B-factor-RsbT	gnl\|CDD\|340411	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains. This family includes the histidine kinase-like ATPase (HATPase) domain of Bacillus subtilis serine/threonine-protein kinase RsbT, a component of the stressosome signaling complex of Bacillus subtilis. The stressosome is formed from multiple copies of three proteins, a sensor protein RsbR, a scaffold protein RsbS, and RsbT, and responds to environmental changes by initiating a protein partner switching cascade. Stress perception increases the phosphorylation of RsbR and RsbS, by RsbT. Subsequent dissociation of RsbT from the stressosome activates the sigma-B cascade, leading to the release of the alternative sigma factor, sigma-B.	4.3795e-37
CP030865.1\|AXO32639.1\|324225_325014_-\|transcriptional-regulator-AraC-family	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	5.99743e-18
CP030865.1\|AXO32642.1\|325947_326895_+\|threonine-dehydratase	gnl\|CDD\|107205	cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.	4.78014e-119
CP030865.1\|AXO32638.1\|322378_323917_+\|regulatory-protein	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	1.17606e-39
CP030865.1\|AXO32648.1\|338821_339325_-\|hypothetical-protein	gnl\|CDD\|224427	COG1510, COG1510, Predicted transcriptional regulators [Transcription].	3.47315e-09
CP030865.1\|AXO32637.1\|321029_322376_+\|putative-SigmaB-asociated-two-component-system-sensor-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.13646e-50
CP030865.1\|AXO32650.1\|340340_341933_+\|tetronasin-transport-integral-membrane-protein-ABC-transporter	gnl\|CDD\|226089	COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane].	6.98238e-111
CP030865.1\|AXO32647.1\|338259_338817_+\|two-component-regulator	gnl\|CDD\|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.57691e-30
CP030865.1\|AXO32651.1\|342023_342356_-\|anti-sigma-F-factor-antagonist-(spoIIAA-2)/anti-sigma-b-factor-antagonist-RsbV	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	1.96915e-22
CP030865.1\|AXO32646.1\|333898_338263_+\|putative-SigmaB-asociated-two-component-system-sensor-protein	gnl\|CDD\|237951	PRK15347, PRK15347, two component system sensor kinase.	3.14071e-71
CP030865.1\|AXO32645.1\|331666_333730_-\|serine-phosphatase-RsbU	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	2.71113e-41

>CP030865.1|AXO32644.1|329127_330795_+|glycolate-dehydrogenase
MTAMADAARSTNRPGALDITRKLAEICGSPFARFAGPADEVAGRTARWVAVPGGPHAAAEVLRLAAAYDLTVVPRGAGTKIDWGAAPAQVDIMLDTGRLAGVWHEPRDAAVAEIGAGTPMRAVQATLARTNRRLPVDAPSPGATLGGVLAADESGPLRHRHGSPCAQLIGVRYLDADGELVSIGESGTAALGRAAPGVGGGRPGGRAPTGDGAAGAAAGAGAGAGMGGAGSGLGGAADGPGWGAGGLAGGPGWDVGDPAAGAGWGAGGPQGSAGGDPGRGGGDAILGRGGMPGLDVARLLCGSQGGLGVLVSATMRVHAVPASRLWVSRPVWTPLEVHDLVRAVLAADIDPAAVELDLPVPVPLPRRRIPPTHPSVINRPDHPAVTGRPAAGSLVVLLEGGPADVTERAARLTAVLGAETMVSHHAPEWWGRYPFAPGDTALRIEVPINDLHAAVYALRDAAGAPVPVRGSAGTGAVHAALPGALPPERVASILTAVRSVLIARQGRCVVVAAPTAVRRTVDLWGELPALPRLRSAKAHLDPHHRLAPGRLPGGL
>CP030865.1|AXO32643.1|326942_329036_-|protease-II
MTETPLPVAKRVPTERVHHGDTVLDEYAWLATKDDPDTIAYLDAENAYTEARTAHLAELRAELFEETRRRTQETDLSVPTRKDGHWYYTRTVEGQQYGVQCRRAVRPGETAPPVSADGAPLDGEEVLLDGNQLAEGHDFFSLGAFDVSPDGRWLAYSTDFSGDERFTLRIKDLTTGESLPDEVPDTFYGTAWSSDASTLFYVTVDEAWRPNRVWRHTVGTPSTEDVVVYQEDDERFWVGVELTRSERFVVIDIHSKITSEVRVIPAANPTGEPAVVAPRRQGIEYAVEHHGHRFLILHNDGAEDFALAYTSADAPGDWTPLIPHTPGTRLEAVDAFENHLVVSLRTNGLTGLRVLPVGSDDSWDIDFPEPIYSVGLDANPEYRTNEVRLRYTSLVTPDSVYDYDLVTRELTLRRQKPVRPGPDGRPYDPADYEQHRDWALADDGTRVPISLVCRRDTPRDGSAPAVIYGYGSYEASMDPWFSIARLSLLDRGVIFAVAHIRGGGELGRRWYDEGKLLAKKNTFTDFVACARHLVKAGWTAGDRLVARGASAGGLLMGAVANLAPDAFTGIVAQVPFVDALTSILDPSLPLTVTEWEEWGNPLDDPEVYAYMKSYTPYENVTAADYPAILAVTSLNDTRVLYHEPAKWIARLRATAPQGDYLLKTEMGAGHGGPSGRYDSWREEAFVNAWILDRVGRA
>CP030865.1|AXO32642.1|325947_326895_+|threonine-dehydratase
MELISIADVRAAAEDVAGTVLRTPLVPVLWDDQLWLKPENLQPVGSFKLRGATHAVARLDPATRSRGVVTHSSGNHGQALAYAARALDVPCTVVVPEGAPEVKVARMRALGADVRLVPPVRRLAEAERIVAETGATLLPPFDHPAIIAGQGTVGLEIVADLPDVDVVLVPVGGGGLGSGVATAVKALRPSAAVIGVEPAFAADARESLAAGEVVVWDVERTYRTCADGLRTSLSALTLAHLRDRLDGIVTVTEDEIKAATGRLIRDARLVAEPSGAIALAARLFHGGELPAGRTVAVVTGGNADPHVLSAALAEV
>CP030865.1|AXO32641.1|325781_325925_-|hypothetical-protein
MSDEEPSAARRGPTWLVLVVVAAALVVCCCSTVIGLVVAGSAGLLGR
>CP030865.1|AXO32640.1|325045_325612_+|hypothetical-protein
MSTKTSELLAVAAPRTVAVVRGISDEQLGLPTPCPDYTVRDLLGHLFDVVVNFQALARRDTVDWSGKTDHLTDGWRDRFAAETARLTEAWSDPAALEGVSPGMGLPQETVGSMALIDLTVHGWDLARATGQELTVDPAVVSAGHEFMDRMGDTGQKMGAFGPPVPTEAAPTSMDALLGRAGRNPAWTR
>CP030865.1|AXO32639.1|324225_325014_-|transcriptional-regulator-AraC-family
MRHEPRRDNRGILDPGRMRRQVRFRRRMADPALRRWVEHYWLIDWDLDEPFEQRVVPHPTVNVVFQAQDGAAEHGEIAGVDTGLFAITLHGVGRVSGVQFRPGGFRPFWRRPVAELTGRRVPITDGPICPGTDDERCARLDELLTSWSPVADPLNAEATALVEEIRADRTVLRVTDFARRRGVSVRRLQRLFLDHVGVGPKWVIRRYRLQEAIEQAAAGPLDWSRVAADLGYADQAHLVREFTAVAGVSPAAYARSLAALQQ
>CP030865.1|AXO32638.1|322378_323917_+|regulatory-protein
MDSGAVTVLVVDDSGPKRYLLVNWLTRAGFVTIEAENGTEALDRVAREHVDLVVLDVRLPDMSGFEVCERIKETHPYIPVIHVSAHAVDVVDRAQGLTRGADAYLAEPIEPEELVATAHAVLRYYQARLRAEQLAERLAALADATVEMHATPNFVRLLEAAASGAARIFKAPAAVVAETFDGDCLAGVAVDPHTPARIVPWVVDDTGVPIGTRVRVDDPGNWALTGWPDGDTVTVAASRLREDRAPLYVVVPTATQTVRTPVLVQLAQAVASAVEAQRSFDEEHRIAVTLQRSLLPQRLPDVVGLDLAVRYEPASAQTEVGGDFYELVMLDGHLLVAIGDVAGHSLHAATVMAELRHAVRAYAVEGHQPGVILDRVNELMRNLLPTELATICVLLLHPPTGLVRLASAGHLPALLSRDGRVEFVSQSAPLLGVRAPRPPDLEFVLPAGATLVLYTDGLIERRDATIDDGMAALGVAAARVDDNLDEFCQRLLVELAPPEIQDDVAVVAVRRR
>CP030865.1|AXO32637.1|321029_322376_+|putative-SigmaB-asociated-two-component-system-sensor-protein
MTEPLLHLALRVEQDIFLVRQRGREVAAAVGLEHQDQVRIATALSEVARELLRGSDGADVTFALDRDAVGRRVLQVDLSPLRPLPGGRYEPQSGAVARLVDTLRVVAVEGDTVVRMSRRVPDHAEELTPERAGRLRAELAERAPGSALDELAAQNSQLITALDEVRSQRDELEVLNSELQETNRGVMALYNQLTEELEETNRGVVALYAELEEKSAQLRAASESKSRFLANVSHELRAPVTAIIGLARLLADSASDPLTGEQARQVGLIRSSAGDLLGLVNELLDLAKAESGRIEPEWSEVDLRAVFGQLRGTLRALTTRSEVELVVEEPPAPATLRSDEVLLAQVLRNLLHNGLKFTERGEVRLRAERRGEQWTLSVTDTGVGIPPELHERIFEEFYQVPGTTRVGGTGLGLPYARRLVTLLGGTLELRSETGRGSTFTVFLPAGGA
>CP030865.1|AXO32636.1|320010_321033_+|phosphoserine-phosphatase-rsbX
MVAMIGDVVPDHGMWFRIDNGATAGGVRRVAERLGRQLEMSAERVADLAIVTAEITSNLVKHAREGALLMRPARRAGLAGVELVAIDSGPGMADLTLSSVDGHSTAGTLGIGLGAIVRQASRFDGYSMPGRGTVLVVQLWDVAPPDPDWAGALARPITGEQSSGDGYAVREVDGRRQVLVSDGLGHGPLAAAATGAAVSAFRSAPDGPPDVVVRHLHASMSHTRGAALAVAEPDPAAGLLRYAGLGNIAAMIVTPGERRRGLVSLPGIAGHQRPTIRGYDYPFSRDATLVMHSDGVVDRWDLDDYPGLAGRNPLLTAATLLRDAGTRRDDACVLVARGAA
>CP030865.1|AXO32635.1|319603_320023_+|anti-sigma-B-factor-RsbT
MTTGVDLGVPATQAIRSDEDVVRVRQLVRTTAVAVRLSLVDQTKLVTAASELARNTLIYGGGGRAEVSTVSDGRRRGVRILFADEGPGIPDLDLALTDGYTTGGGLGLGLSGARRLVDDFDIQTAVGEGTRITVTKWSR
>CP030865.1|AXO32645.1|331666_333730_-|serine-phosphatase-RsbU
MSAEAGATRSGGADEHVRRVRLPADRRTPAAARAVVRTMLLEARLPELLNEALLLTTELTTNAVEHARTELDIEVEADPNGLTVTVTDFASGPVDELIVGVRNTTSDIAEVATRGRGLLLVDHFSSRWGTTYLPTGKGVWFRLDRPGPGGPARPSAGPPPVTEPERTGDGTPSAAAMSELMQITPDPYADEPLAEFATGLLTRVGEMVGAAGGTVRLDRGDGLGTQVFARYGRQPRESNELLRVPLAVHRPYTGELELDAAPSTYARPLAVLAAERLSLHLENDRLRRADVRRSTWLTFLAEASELLAQSLDVELTMALIPQLVVPRLGQWCAVHTTDEWGRLRLAASSHADEAMLPQLHRILQETGPDSIQSRLREASRNAAQVPLGGPMEGFAVPLIARGQRLGTLAVGRHQRHRHDPDEVSVLEDVARRAALAIENARIHAERRRVAQTLQQSLLPPVLPVVEGIGFAAEYVPTGDDAEVGGDFYDVVPLPDGRWLVVVGDVSGKGVQAAAVTGLVRDVIRVLVGDGKPLPEVLSRLNETLVERGGGRYCTLALAAVSPGDGDQLDVSLHLAGHDRPVLLHGGGGATFVGTGGTALGLLDAISTPTAELALKPGDALIFYTDGVTERRRGRELFGTERLRESAAPLAGYSADVVAARLRAATIAFSVEPPRDDIAILVLRNDTP
>CP030865.1|AXO32646.1|333898_338263_+|putative-SigmaB-asociated-two-component-system-sensor-protein
MTTAKQSVTADPSASDHEVLLGELVDALRRVAHGDLRVRLPRRAGLPGEVADAFNDVVSLQERQHLDLRRISRIVGRDGRLTERLDDEGLDGSWAEGQRAVNSLIDDLGRPTTEIARVIVAVADGDLSQHMALEIDGRPLRGEYLRIGRTVNTMVDQLSSFADEVTRVAREVGTEGKLGGQADVRGVAGTWKDLTDSVNTMASNLTGQVRSISQVATAVAKGDLSQKITVGARGEVAELADTMNSLTDTLRLFAEQVTRVAREVGTEGKLGGQAEVPGVAGTWKDLTDNVNSMASNLTAQVRNIAQVSTAVAKGDLSQKITVAAQGEILELKDTVNTMVDQLSSFADEVTRVAREVGIEGKLGGQAQVRGVSGTWRDLTENVNQLAGNLTSQVRNISQVSTAVAKGDLGQKITVDAQGEILELKNTVNTMVDQLSSFADEVTRVAREVGTEGKLGGQAQVKGVSGTWRDLTDNVNSMASNLTSQVRNIASVTTAVAKGDLSQKITVDARGEILELKSTVNTMVDQLSSFADEVTRVAREVGTEGKLGGQAQVRGVAGTWRDLTDNVNSMASNLTAQVRNIAQVSTAVAKGDLSQKITVDARGEILELKSTVNTMVDQLSSFADEVTRVAREVGTEGKLGGQAQVKGVSGTWRDLTDNVNSMASNLTSQVRNIASVTTAVANGDLGQKITVDAQGEILELKNTVNTMVDQLSSFADEVTRVAREVGTEGKLGGQAQVKGVSGTWRDLTENVNQLASTLTTQLRAIAQVSTSVTRGDLTQRINVKAQGEVAELKDNINQMIVTLRETTKKNAEQGWLDSNLARIGGLLQGQRDLGEVCRMIMMEVTPLVDAQLGAFFLADSSEGSMRLRLTASYGYVARGHDVTFGPGEGLVGQAALSRRTIRVKAQPDGRLVVRSGLADTPPADLVVLPVLFEGELLAVIEFAGVATFSDLHLAFLERLVLTIGVAVNTIQANRRTEELLAQSQRLAHEMQDQSAELQRTNAELEDKAKLLSEQKANIETQNREIELARLGLEEKAQQLTRASAYKSEFLANMSHELRTPLNSLLLLARLLAENPERNLSAKQIEFARTIHGAGSDLLSLIDDILDLSKIEAGRMDVEPTEIQFAEIRSYVEQAFAPQAEEKGLDFQVRVSGDLPPALVTDAQRLQQILRNLLSNAVKFTDNGAVTLRIGPAAENAVFDVPALTNAQRVIAFTVIDTGIGISDDKLSLIFEAFQQADGTTSRRYGGTGLGLSISRDLARLLGGTITVSSAPGQGSTFTLFVPEVLAPDAVVAPAPPSPSRAGLPSSLLMPMELPQPQETPATRRLDGVTVLIIDDDVRNVFALTSALELHGMTVLYSDNGADGVRQLAEHPEVDIVLMDAMMPDQDGYETTAQIRRNHRFADLPIVFLTAKAMPGDRESALSAGGSDYITKPVDLDELIELMASWIGRSRGEENP
>CP030865.1|AXO32647.1|338259_338817_+|two-component-regulator
MTQTAKALLVDDRRENLMALEAILQGLPVQSVAVESGEAALKQLLVDDFAVILLDAQMPDMDGFETATHIKRRERTRHVPIIFLTAADKDAQLALRGYAAGAVDYLTKPFDPWVLRAKVTVFVDLWVKTRQLAAQSDLVRERDLQWRHLTDAVDEATTLLRADDDPSARDRAVDLLEQARWGNTR
>CP030865.1|AXO32648.1|338821_339325_-|hypothetical-protein
MNVPPHHDEEEVHLFIERMAMAFADVGFPRMAARVLFTVMSADEPLTAGEIAERLGVSAAAVSGAVRYLTQFAMLVREPVKGSRSDRYRMPDNPWYEATITKTTIYKNFIDIAAGGVDALHGRSTPAGERVAEMRDFFLFVQEELESLGDRWRARRAATGHGGPAGG
>CP030865.1|AXO32649.1|339417_340344_+|ABC-transporter-ATP-binding-protein
MSGLVKTFGRTRALDGLDLTVRTGEVHGFLGPNGSGKSTTIRVLLGLLRADAGAARLLGADPWRDAVALHRRLAYVPGDVTLWPNLSGGEVIDLLGRMRGGLDPKRRAELLESFELDPRKKGRTYSKGNRQKVGLVAALASDVELLILDEPTSGLDPLMEEVFQHWVRRAVHDGRTVLLSSHILAEVEALCDRVTIIRAGRAVESGTLGDLRHLHRTAIDAEVAAPLDGLADLPGIHDLRVDGRRVRFDVDTAALDAALRRLTELGVRSLVSTPPTLEELFLRHYETASSSDAASSSGVARPETADRS
>CP030865.1|AXO32650.1|340340_341933_+|tetronasin-transport-integral-membrane-protein-ABC-transporter
MSTLTGTRHLVRLILRRDRILLPLWVLILAVLPMTYAASFAGLFPTAAERAAYLEGTARNPSIVALLGPAYGDSVGGLTAQRSGFLLLIVALASLLTVIRHTRTEEEAGRRELLGGNVLGRHAGLTAALLVTYAADLLLGLLTAAGLVATGLPVGGSVAYGLVTVLTGVVFATLGGLAAQLTETAGGARGIGLAGLGAAFGLRLAGDTASNDWPSWLSPLGWAARARPYEGERWWVLLLPLAATALLAALAYPVSVRRDLGAGVLPPRLGPATAGGGLSGPFGLAWRLHRGQILWWSVGFGLLGLILGGAAEAAGRSVEGSPRMEEIVARLGGASGMADAYLGVTLSLAGLAAAGYGIQAALRMRAEESAGHAEPVLATGTRRSTWLLSHVTFALLGPVVVLAVTGLATGLTYGLSTGDVPRQLGRMLAAGLTQVPAAWVLAGLAVLLYGLLPRLAPATWAVLAVCVLLGQLGAVLELDQWLLDLSPFTHTPQVLRDAWTPTPLYVLTALAAALAAAGLLTFRRRDLPVL
>CP030865.1|AXO32651.1|342023_342356_-|anti-sigma-F-factor-antagonist-(spoIIAA-2)/anti-sigma-b-factor-antagonist-RsbV
MDRAELSITVHRTGDEAVLRLAGEIDMLTAAQLSTVVNEVLADPPPRIVLDLAGVTFCDSQGLGTLVVLSRKASHARSLLMLSNVGDFLIRVLDITGLRSALMIRNEATP
>CP030865.1|AXO32652.1|342500_343838_+|glutamate-1-semialdehyde-aminotransferase
MTETLSAGSGRYPADAPASEALFDRAKALVPGGVNSPVRAFRAVGGTPRFMVRGEGPWLFDADGRRYVDLVCSWGPLILGHAHPAVVEALREAAALGTSFGTPTPGEVDLAEEIVARTPVEQVRLVNSGTEATMSAIRLARGFTGRSKIIKFAGCYHGHSDALLAAAGSGVATFGLPDSPGVTGAAAGDTIVLPYNDLRAVEEAFAAQGPHIGAIITEAAAGNMGVIAPRDGFNAELARIAHAHGALLIVDEVMTGFRVSRAGWHGLDPSDADLWTYGKVMGGGLPAAAFGGRAEIMAKLAPAGPVYQAGTLSGNPLACAAGLATLRLADDALYRRLDETSAALGKLTTEALSAAGVPHRLSTAGNMFSVFFTDADVRDYDSARTQVVPAFKAFFHAMLAGGVYLPPSAFESWFVSTAIDDAAWEQISAALPVAARAAAAAGNGG
>CP030865.1|AXO32653.1|343841_344489_+|hypothetical-protein
MAETVVHVLRHGEVYNPDGILYGRLPGFRLSELGVQMAKAAAQALADRTVVHVVASPLERAQQTAEPIAAQFGLSVGVDERLIESANWFEGKKVSPGDGSFRDPRNWWVLRDPVTPSWGEAYRAIAERMFAALHAARVAAEGREAVLVSHQLPIWTLRRHVERKRLWHDPRRRQCGLASLTSFHFDGAKIVGIGYSEPAAHLVSISPTARTAKGA
>CP030865.1|AXO32654.1|344488_345064_+|thiol:disulfide-oxidoreductase-related-to-ResA
MLTRRLAAALLAAVTAGSALVGCTSGNQESRCAADGSVVTCEPAQRSKTPKVSGELLTGGGYDISRDRGQVVVVNFWGSWCAPCRAEADDLEDTYQATKGSGVSFLGINVQDSKDKALAFEEGRVTYPSIFDPASRQALNFDIPPNTTPATVVLDREGRIAVVIRRAVTRDELRPIVEKIAAESPAPNGAR

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Crispr_ID: CP030865_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030865_2

388300-388385

Orphan

Consensus_repeat	Method
CGGCATGAGCGAACGCACCGAGCGGAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030865_2

>merge|CP030865|2|388300-388385|CRISPRCasFinder
CGGCATGAGCGAACGCACCGAGCGGAGCGAGGGCCGTGAGGGCATGCCCAGCCAGCACGGCATGAGCGAACGCACCGAGCGGAGCG

>CP030865|2|2|388300-388385|CRISPRCasFinder
CGGCATGAGCGAACGCACCGAGCGGAGCG	AGGGCCGTGAGGGCATGCCCAGCCAGCA
CGGCATGAGCGAACGCACCGAGCGGAGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP030865.1\|AXO32696.1\|382687_383929_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340863
CP030865.1\|AXO32693.1\|379127_379727_+\|hypothetical-protein	unknown	unknown	unknown
CP030865.1\|AXO32704.1\|389863_390976_+\|phenylacetate-CoA-oxygenase/reductase-PaaK-subunit	unknown	unknown	gnl\|CDD\|131215
CP030865.1\|AXO32707.1\|392449_392614_-\|hypothetical-protein	unknown	unknown	unknown
CP030865.1\|AXO32699.1\|385894_386863_-\|hypothetical-protein	unknown	unknown	unknown
CP030865.1\|AXO32690.1\|377530_377824_+\|hypothetical-protein	unknown	unknown	unknown
CP030865.1\|AXO32698.1\|384959_385895_-\|lipoprotein-LppW	unknown	unknown	unknown
CP030865.1\|AXO32695.1\|382065_382647_+\|transcriptional-regulator-ArsR-family	unknown	unknown	gnl\|CDD\|238042
CP030865.1\|AXO32709.1\|394353_395613_+\|cell-wall-anchor-protein	unknown	unknown	gnl\|CDD\|275060
CP030865.1\|AXO32694.1\|379764_381810_-\|putative-ATP/GTP-binding-protein	unknown	unknown	gnl\|CDD\|226482
CP030865.1\|AXO32697.1\|384063_384915_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270352
CP030865.1\|AXO32703.1\|389420_389867_+\|phenylacetate-CoA-oxygenase-PaaJ-subunit	unknown	unknown	gnl\|CDD\|131214
CP030865.1\|AXO32702.1\|388671_389394_+\|phenylacetate-CoA-oxygenase-PaaI-subunit	unknown	unknown	gnl\|CDD\|368300
CP030865.1\|AXO32692.1\|378769_379123_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376829
CP030865.1\|AXO32708.1\|392736_393927_+\|dehypoxanthine-futalosine-cyclase	unknown	unknown	gnl\|CDD\|274731
CP030865.1\|AXO32691.1\|377833_378760_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274862
CP030865.1\|AXO32705.1\|391003_391492_-\|hypothetical-protein	unknown	unknown	unknown
CP030865.1\|AXO32706.1\|391685_392450_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|376556
CP030865.1\|AXO32710.1\|395712_396423_+\|2-heptaprenyl-14-naphthoquinone-methyltransferase	unknown	unknown	gnl\|CDD\|234689
CP030865.1\|AXO32711.1\|396498_396717_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP030865.1\|AXO32696.1\|382687_383929_+\|hypothetical-protein	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.01513e-36
CP030865.1\|AXO32702.1\|388671_389394_+\|phenylacetate-CoA-oxygenase-PaaI-subunit	gnl\|CDD\|368300	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein. This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex.	1.71753e-115
CP030865.1\|AXO32704.1\|389863_390976_+\|phenylacetate-CoA-oxygenase/reductase-PaaK-subunit	gnl\|CDD\|131215	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	3.80357e-153
CP030865.1\|AXO32708.1\|392736_393927_+\|dehypoxanthine-futalosine-cyclase	gnl\|CDD\|274731	TIGR03699, menaquin_MqnC, dehypoxanthine futalosine cyclase. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	0
CP030865.1\|AXO32695.1\|382065_382647_+\|transcriptional-regulator-ArsR-family	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	7.11584e-12
CP030865.1\|AXO32709.1\|394353_395613_+\|cell-wall-anchor-protein	gnl\|CDD\|275060	TIGR04216, halo_surf_glyco, major cell surface glycoprotein. Members of this family are the S-layer-forming halobacterial major cell surface glycoprotein. The highest scores below model cutoffs are fragmentary paralogs to actual members of the family. Modifications include at N-linked and O-linked glycosylation, a C-terminal diphytanylglyceryl modification, and probable cleavage of the PGF-CTERM tail.	1.64532e-05
CP030865.1\|AXO32694.1\|379764_381810_-\|putative-ATP/GTP-binding-protein	gnl\|CDD\|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	1.06694e-73
CP030865.1\|AXO32697.1\|384063_384915_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270352	cd13634, PBP2_Sco4506, The conserved hypothetical protein SCO4506 exhibits the type 2 periplasmic-binidng protein fold. This group includes the SCO4506 protein from Streptomyces coelicolor and related hypothetical proteins. SCO4506 is an ortholog of Ttha1568 (MqnD) from Thermus thermophilies HB8. MqnD is an enzyme within an alternative menaquinone biosynthetic pathway that catalyzes the conversion of cyclic de-hypoxanthine futalosine to 1,4-dihydroxy-6-naphthoate. Menaquinone (MK; vitamin K) is an essential lipid-soluble carrier that shuttles electrons between membrane-bound protein complexes in the electron transport chain. SCO4506 has significant structural homology with the members of type 2 periplasmic-binding fold protein superfamily. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.69507e-108
CP030865.1\|AXO32691.1\|377833_378760_+\|hypothetical-protein	gnl\|CDD\|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	3.65833e-09
CP030865.1\|AXO32692.1\|378769_379123_+\|hypothetical-protein	gnl\|CDD\|376829	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family. This is a family of DNA-binding proteins. Members of this family form homodimers which bind DNA via a tweezer-like structure. The conformation of the DNA is changed when bound to these proteins. In bacteria, these proteins may play a role in DNA replication-recovery following DNA damage.	4.05673e-11
CP030865.1\|AXO32703.1\|389420_389867_+\|phenylacetate-CoA-oxygenase-PaaJ-subunit	gnl\|CDD\|131214	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	3.21673e-54
CP030865.1\|AXO32706.1\|391685_392450_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|376556	pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine amidase. This family includes zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity EC:3.5.1.28. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). The structure is known for the bacteriophage T7 structure and shows that two of the conserved histidines are zinc binding.	2.61538e-13
CP030865.1\|AXO32710.1\|395712_396423_+\|2-heptaprenyl-14-naphthoquinone-methyltransferase	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	4.25189e-118

>CP030865.1|AXO32699.1|385894_386863_-|hypothetical-protein
MTMVLAIVAVLVGGVMLVPAAYAKFAGGNGEGGIGGGGQVPAPSPTAPAPPTLADAPVSVKFEGEFFSWALMDRETGTVTGAKNMNQTSSTESMLKAWIVADYLRQLGEKEPSDDLKKAAILAIRNSDDDGANRVYRAAGGSYRPQSGGKPDPVIARAIRICGLTDTRPGDVPEYKGWWSFTEMSPRDAVRLGDCIADGRAAGPKWTKWLLSEMTKVAGSVKQQSQRSGGGRWGIIDGLPATIKAQGPVHMKNGWTRLAYDNNWHVSCLAFTDKWSLSVMMRYPSRSSLSYGAEVCASVATQLVTPQPGAALKVPQQPAGKL
>CP030865.1|AXO32698.1|384959_385895_-|lipoprotein-LppW
MAGARRRPGSHRRPLAFSALAVVLVGLLGLSLRVIPGSPLEATANSHAEPTAERSAKQPVDRNATRVAPSPALTPLPFQEKNLDSLKIKGWYGWSVLDKRTGKIIGSANMDETSTTASLIKSWVVADYLRLRAEDGKTPSEAKLADATKIIRDSDNTRAQEFYESVGGSDSIERLISICKLTDSAVASDGGWSRTELSPRDTARLGLCIDDGRAAGPKWTKWLLDEMRQVRAPGDFGIRKAFPAAQQKKIAIKNGWIDRDKEEEYHVNCLAIGDTWTMGVMVRSPFGVEGGWEYGMDACERITKALLRPAT
>CP030865.1|AXO32697.1|384063_384915_+|ABC-transporter-substrate-binding-protein
MADRIARPRVGHIQFLNCLPIYWGLMRSGALIDVDLHKDSPDRLSADLVAGDLDIGPITLVEFLKHADDLLLLPDLAVGSDGPVLSVNMVSTRPLGELDGARVALGSTSRTGVLLAQLLLAERHGVRPEYFRCPPDLTQMLLEADAGVLIGDVALRALYEAPAKGLEVTDLGQAWHDWTGLPMVFAVWAVRRDFAAAHPGLVKEVHEAFLRSRDLCLAELDQVAEAAARWETFDADTLATYFRALDFSLGERQVAGLREFARRAAAYGEVPALPAGGPEFFQG
>CP030865.1|AXO32696.1|382687_383929_+|hypothetical-protein
MSFASGSSRWPDVWLAATARGISSCGNFLVTSALTLALQSAGAGGLAVSGLLLAATLPLVALAPLTGRLADRVDSRVLLTVAGIGQGATCLALAYAPEPALVIALVALLATGLAVTQPVISALVPAMVRPEDLPRAGALNQTAGTLGALAGPALAGLLVGQFGTRVPLLLGALSYLSLVAAGLLVRTRRGGRRVTAGTAAAVAPPWRFRRDPLLTVMVGSVAAVIGAVGAVNVIEVFFIRETLGSSATVYGLVTGSWPLGVVVGAWLFARVARRLADDGALLGAGLVLLGGCCLAVLVSAAVPSAWLLVPIWLLGGVGNGGDNVFNNLLLARRVPEAARGRAFAVFGAAAQGAAMGGYLVGGLLLEVAGPRALIAGCGVAGLLVVVALLGPVRRAVRAERAVVPDAAVAVEAA
>CP030865.1|AXO32695.1|382065_382647_+|transcriptional-regulator-ArsR-family
MTEARPEQRRVTISDPQVMRALAHPARMAIMEHLGTLEGGATATECAEIAGLSPSATSYHLRELAKFGLIRQAPGRGDARERVWQAVNPSFHVEVGPDADPEARAAEAALIEAHLVRDAQRVRDWLRKAPDEPQEWYEATWLSDSVLLVTAEELTGLNQAIQELMEPYRRRNRTDPPAGVRPVAAQYRAMPID
>CP030865.1|AXO32694.1|379764_381810_-|putative-ATP/GTP-binding-protein
MPATEVDATASLDAELAAERAHLTASRAALTRMRERAEALFATGDKVAGDSYTAEQLGRHMARRVKELADDPTTPLFFGRLDFGETDPDHSGREYHVGRRHITDELGEPLVLDWRAPVSRSFYRASARDPQGVAVRRRFGFSAGVLTSFEDEHLDRGEELGTASRILTAEIERPRVGPMRDIVATIQPEQDELVRADLADSICVQGAPGTGKTAVGLHRAAYLLYLHRERLRRSGVLIVGPNRAFLSYIAAVLPALGEVEVEQATVEDLVTRVPVRAVDDPAAAALKHDVRMAEVLRRAVEAHIGTPTEPIMVSDGSYRWRIGLDPLHRLVTETRAEGLPYATGRERVRARIVGLLQRQAEARRAESPSDAWLRRMSRIKPVTDLLDAVWPALTPDGLLHRLRTDADALAAAADGLLTPEDQELFRSGRIARTAKATRWTAADAVLVDEVAGLLERPAGFGHVVVDEAQDLSPMQCRAIARRSEHGSITLLGDLAQGTAPWAATDWRESLAHLGKPDAAVVPLSVGFRVPAAVVAFANQLLPALAVDVPAARSLRHDGALDVRTAEDLTAATVAEVRAALAHDGSVGVIAADDAVDRLRAALADAGVETATADDVEAAARVTVVPATLVKGLEYDHVVVVEPAAIVAAEPRGLHRLYVVLTRAVSRLAVLHREPLPAPLAA
>CP030865.1|AXO32693.1|379127_379727_+|hypothetical-protein
MDETRYRDPIDRLVEPGERVLAHAKADVGQGLAPAPPPEPESTAEPGRRTVGSVLLNVLLPLATWDRGDRLVDLIGWGIAGRGEPGSAASRLHRALRPPRPDLQVRETLLAVTDRRLLVCRTGGVKLLAGREAEERALAETSVAWSAARAEVASARVGWHRLNPKRLRINFTDGSWLSFTVPIAESGRPLREVAAALSG
>CP030865.1|AXO32692.1|378769_379123_+|hypothetical-protein
MTFPALDRIEALARNLDGWQRELGARMAELEQSNATGVSDSGLVTVVAAADGKILSTDINARAMRFDSYTLAEEITAAANRAQEAAAARVREIVGEVMGNAPAAERRTDDGYGDGRY
>CP030865.1|AXO32691.1|377833_378760_+|hypothetical-protein
MSTEALQRNKTYFEQIVSGTPDPFKPLSNAVLWPFEQLLELVAGEPDDLMRAAQLALTTGDAVRQIAGDQVADRARLRGGWEGDAADKFHASMESIEEAMEELAKGLDGTKEVLVDAANAAVDAFNLLVELILEFLLWFLTEVIIAAVAAVLSAGVSLAATVVRVLARLATVVGRMVKIVARFAEILTKLATKLQKVAELLMRYRRVVLELREAKKAYGVFKKAGYTREAVLFKAKRAAILFPGKFAINQTSPVNIPGVGGALLDTGMGLHDISDGRKDRNYLVDGTYREDLGPYTKGVQNVFDSIVN
>CP030865.1|AXO32690.1|377530_377824_+|hypothetical-protein
MQPEALTAFAAASRDRAGQFRELHRLFRDGHVARHAFGVMPASFSLAAAYEQQFEACLEGLEDGAEVMATIAEGLRDTAEAYTGTDVANTDMFNPGA
>CP030865.1|AXO32702.1|388671_389394_+|phenylacetate-CoA-oxygenase-PaaI-subunit
MSRFDFTLAIGDDALIAAQRLGEWTSRAPEMEEDIALANIALDQLGAARLLLTYAGELEGAGRDEDDLAFLRDDREFRNCLLVELPNGDFGVTMAKLFFLAAYQVPLYTALAGCADERLAAVGAKARKESAYHLDHAALWVKRLGDGTEESHRRMQDAVDEVWPYVHELFDPDPAAPVDPAALRADFDATVAAVLDEATLTRPETGWTPGGGRDGLHTEHLSYLLAEMQVLHRAHPGASW
>CP030865.1|AXO32703.1|389420_389867_+|phenylacetate-CoA-oxygenase-PaaJ-subunit
MVDPEIRVITIDELGILRAVDEEPGTGRVVVTITPTYTGCPAMDVIREDIRRALTVAGHPDAEVRTVYHPAWSTDWLSDAGRAKLAAAGIAPPAPRGDDTVVPLTLAVRCPRCGSPETTQISRFGSTACKALWRCRSCSEPFDHLKAL
>CP030865.1|AXO32704.1|389863_390976_+|phenylacetate-CoA-oxygenase/reductase-PaaK-subunit
MTVTITRPVRRRPVFHPLPVAAVDRLTDDSVSITFAVPEELRETFAFSAGQHLTVRRPADADGGEVRRSYSICSTPDELARHGRLRVGVREVPGGAFSAYACGALRGGDTVEVLPPLGHFTSAFTPDRVRRYGAVVAGSGITPVLGLAATALAVEPRSTFTLVYGNRTANSVMFAEELADLKDRYPTRLHLVHVLSREMGESALLSGRIDADRLTRLLDTVVPGDEIEEWFLCGPYGMVVDAKAVLAGRGVPDAAVHTELFHVDAPPEPVRREVERSGAGAEVTIVLDGRSSSFTMGRDERVLDAALRVRGELPYACKGGVCSTCRARVISGEVTMARNYALEPDEVAAGYVLTCQSSPVTDELTVDYDA
>CP030865.1|AXO32705.1|391003_391492_-|hypothetical-protein
MPICLGLAGCFAFAVALRLLHRAWWLAVLSVVPALFVLVGTVQLAPEAVLRERGVAQQVTITDVQTSGKRHEFALRGDAGPLDEPLVYSGSAPGYRVGQQLTVLTDPQRQVELADAEDVDVAGKRSMLVFGAVGWTLFALLAGWRGHVRRARGRQAMAPLPI
>CP030865.1|AXO32706.1|391685_392450_-|N-acetylmuramoyl-L-alanine-amidase
MATIPWLADVLRSAGVTVVEEGNWLGRVAGSSFNPIGVLWHHTAATSSATNPHPALGICINGRSDLPGPLCHALVDYHGVFHVISGGRANHAGSSRGSGPIPAGDGNTLMVGWEIDYNGVDQRMTPAQYSASVLATAAVLRRLGRDASYARGHRETSTTGKIDPSFIDLDSMRADVARQLTGNPPLELWKDDMKLIQSTNRGIALVGPGYFRLLRNNEEVYAAVALVGNPLIGNDRQFDLWRSIAFDGEVKAPS
>CP030865.1|AXO32707.1|392449_392614_-|hypothetical-protein
MTEEPVPRTRRALPRRALLVLAPLAAGGLALTAGPRPAAAATTAPECLADLLER
>CP030865.1|AXO32708.1|392736_393927_+|dehypoxanthine-futalosine-cyclase
MTANREIDDILQRGADGGRITPEEALLLYIDAPFHALGEAADAVRRRRYPDNIVTYLIDRNINYTNVCVTACKFCAFYRAPKHKEGWTHPTEEILRRCGEAVELGATQVMLQGGHHPDYGVEYYEELFSSVKKAYPQLAIHSIGPSEILHMAKVSGVSLDEAIARIKAAGLDSIAGAGAEMLPDRPRKAIAPLKESGARWLEVMELAHRQGLESTATMMMGTGETNAERIEHLRMIRDVQDRTGGFRAFIPWTYQPENNHLKGRTQATTLEYLRLVAVARLFFETVPHLQASWLTTGKDVGQLALHMGVDDLGSIMLEENVISSAGARHRSNLHELIGMIRSADRIPAQRDTLYNRLAVHHTPADDPSDDRVVSHFSSIALPGGGAGKSLPLVEVN
>CP030865.1|AXO32709.1|394353_395613_+|cell-wall-anchor-protein
MTFRYRSTLASAGVVALLSSAGLGALAGPAQAADKADLQLIPLSYQIANGVTKAKAKPFKFQVNNTVGTVDAKGVRVTVETKNLKTGKVGVLVPKGCDIRGTAFSCLLGDLPAGTTEDFGIPLFSTGGKGAAGTLTVAISAANGTGVLDTVEHDITVTDPGYDLTTWVQDVYADVAVDGDDAGESGLRPVRPGQTAPLDWAVFNDGSENATGISYGITLPAGVTFAELPEGCVEQNLGGFANAYCEDLGVVLKPGQYYTADVRVKVGADVTEKLLRPGFVWAAGLDAATGTPEEQPKVASSAQRRAFSEADDGDNTAQFDVFVDQSPQSTPSPTPTVQPTSTPTAGPTPTGSVTAVPTPTADGGAGGGTGGGGLPVTGMQVGLIGGIGAAVLAAGVALMMLSRRRKVVLVTPGEERTED
>CP030865.1|AXO32710.1|395712_396423_+|2-heptaprenyl-14-naphthoquinone-methyltransferase
MSRTPQGQRASLDKQPHEVAAMFDGVAARYDLTNTVLSFGQDRSWRRATRAALGLRPGERVLDVGAGTGVSTEELAHSGAYAVGADLSLGMLYAGKRTRPSVPLLAGDALRLPFADASFDAVTISFALRNVNDTDAALRELARVTRPGGRLVVCEFSTPVNQAFRTVYLSYLMRSLPAVARAVSSNPDAYVYLAESIRAWPDQPALAARIGAAGWGRVAWRNLTGGVVALHRAVRN
>CP030865.1|AXO32711.1|396498_396717_+|hypothetical-protein
MTGPDQAATDDDAAELIAQLRELAGADPADVRQVVAEVLAALDRAAGGALRDHLPEAIRLDAGLGPAAPARP

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Crispr_ID: CP030865_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030865_4

1788054-1788160

Orphan

Consensus_repeat	Method
AGGGCCGGAAGTGCAAGATCGCCGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030865_4

>merge|CP030865|4|1788054-1788160|CRISPRCasFinder
AGGGCCGGAAGTGCAAGATCGCCGAGTCTGCGCTGATCTTGCACTTGCCGCCCCGGCAAAGCGGGCAAAACGCCCACACGAAGGGCCGGAAGTGCAAGATCGGCGAG

>CP030865|4|3|1788054-1788160|CRISPRCasFinder
AGGGCCGGAAGTGCAAGATCGCCGAG	TCTGCGCTGATCTTGCACTTGCCGCCCCGGCAAAGCGGGCAAAACGCCCACACGA
AGGGCCGGAAGTGCAAGATCGGCGAG

Protein	Signature genes	Signature genes Name	Protein_function
CP030865.1\|AXO34023.1\|1788185_1789277_-\|UDP-N-acetylenolpyruvoylglucosamine-reductase	unknown	unknown	gnl\|CDD\|237552
CP030865.1\|AXO34025.1\|1790296_1791607_+\|putative-sugar-binding-secreted-protein	unknown	unknown	gnl\|CDD\|270303
CP030865.1\|AXO34030.1\|1796012_1796918_+\|phosphinothricin-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP030865.1\|AXO34015.1\|1778859_1779636_-\|phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184519
CP030865.1\|AXO34013.1\|1776598_1777903_-\|phosphate-regulon-sensor-protein-PhoR-(SphS)	unknown	unknown	gnl\|CDD\|274368
CP030865.1\|AXO34028.1\|1793491_1794859_+\|beta-glucosidase	unknown	unknown	gnl\|CDD\|274539
CP030865.1\|AXO34022.1\|1787050_1787833_+\|N(5)-glutamine-methyltransferase-PrmC-methylates-polypeptide-chain-release-factors-RF1-and-RF2	unknown	unknown	gnl\|CDD\|377556
CP030865.1\|AXO34016.1\|1779777_1781103_+\|putative-integral-membrane-transport-protein	unknown	unknown	gnl\|CDD\|340887
CP030865.1\|AXO34029.1\|1794878_1795886_+\|HTH-type-transcriptional-regulator-celR	unknown	unknown	gnl\|CDD\|224525
CP030865.1\|AXO34021.1\|1786119_1786935_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|226674
CP030865.1\|AXO34017.1\|1781183_1782434_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340887
CP030865.1\|AXO34026.1\|1791675_1792665_+\|binding-protein-dependent-transport-systems-inner-membrane-component	unknown	unknown	gnl\|CDD\|224096
CP030865.1\|AXO34018.1\|1782808_1783981_-\|14-alpha-glucan-branching-enzyme	unknown	unknown	gnl\|CDD\|235906
CP030865.1\|AXO34024.1\|1789347_1790103_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274422
CP030865.1\|AXO34019.1\|1784058_1784601_-\|uncharacterized-protein	unknown	unknown	gnl\|CDD\|371210
CP030865.1\|AXO34031.1\|1796910_1797429_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234759
CP030865.1\|AXO34014.1\|1778115_1778760_+\|phosphate-transport-system-regulatory-protein-PhoU	unknown	unknown	gnl\|CDD\|273990
CP030865.1\|AXO34020.1\|1784637_1785990_-\|glycosyltransferase-MshA	unknown	unknown	gnl\|CDD\|132490
CP030865.1\|AXO34032.1\|1797430_1798222_-\|membrane-protein	unknown	unknown	gnl\|CDD\|179898
CP030865.1\|AXO34027.1\|1792661_1793495_+\|N-Acetyl-D-glucosamine-ABC-transport-system-permease-protein-1	unknown	unknown	gnl\|CDD\|223472

Protein	Function_ID	Function_description	E-value
CP030865.1\|AXO34023.1\|1788185_1789277_-\|UDP-N-acetylenolpyruvoylglucosamine-reductase	gnl\|CDD\|237552	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase.	0
CP030865.1\|AXO34025.1\|1790296_1791607_+\|putative-sugar-binding-secreted-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.56664e-35
CP030865.1\|AXO34030.1\|1796012_1796918_+\|phosphinothricin-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.84415e-15
CP030865.1\|AXO34015.1\|1778859_1779636_-\|phosphoglycerate-mutase	gnl\|CDD\|184519	PRK14120, gpmA, phosphoglyceromutase; Provisional.	1.47409e-177
CP030865.1\|AXO34013.1\|1776598_1777903_-\|phosphate-regulon-sensor-protein-PhoR-(SphS)	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	4.34494e-83
CP030865.1\|AXO34028.1\|1793491_1794859_+\|beta-glucosidase	gnl\|CDD\|274539	TIGR03356, BGL, beta-galactosidase.	0
CP030865.1\|AXO34022.1\|1787050_1787833_+\|N(5)-glutamine-methyltransferase-PrmC-methylates-polypeptide-chain-release-factors-RF1-and-RF2	gnl\|CDD\|377556	pfam05761, 5_nucleotid, 5' nucleotidase family. This family of eukaryotic proteins includes 5' nucleotidase enzymes, such as purine 5'-nucleotidase EC:3.1.3.5.	0.00917226
CP030865.1\|AXO34016.1\|1779777_1781103_+\|putative-integral-membrane-transport-protein	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.14494e-73
CP030865.1\|AXO34029.1\|1794878_1795886_+\|HTH-type-transcriptional-regulator-celR	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.82226e-106
CP030865.1\|AXO34021.1\|1786119_1786935_+\|short-chain-dehydrogenase	gnl\|CDD\|226674	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only].	9.64346e-84
CP030865.1\|AXO34017.1\|1781183_1782434_+\|hypothetical-protein	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.55078e-61
CP030865.1\|AXO34026.1\|1791675_1792665_+\|binding-protein-dependent-transport-systems-inner-membrane-component	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.7547e-84
CP030865.1\|AXO34018.1\|1782808_1783981_-\|14-alpha-glucan-branching-enzyme	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	4.53317e-12
CP030865.1\|AXO34024.1\|1789347_1790103_+\|hypothetical-protein	gnl\|CDD\|274422	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083. This protein family pulls together several groups of proteins, each very different from the others. They share in common three conserved regions. The first is a region of about 38 amino acids, nearly always at the N-terminus of a protein. This region has a bulky hydrophobic residue, usually Trp, at position 29, and a His residue at position 37 that is invariant, so far, in over 150 instances. The second conserved region has a motif [DE]xxxHxxD. The third conserved region contains a hydrophobic patch and a well-conserved Arg residue. Most examples are found in the Actinobacteria, including the genera Mycobacterium, Corynebacterium, Streptomyces, Nocardia, Frankia, etc. The pattern of near-invariant residues against a backdrop of extreme sequence divergence suggests enzymatic activity and conservation of active site residues.	1.39268e-11
CP030865.1\|AXO34019.1\|1784058_1784601_-\|uncharacterized-protein	gnl\|CDD\|371210	pfam10722, YbjN, Putative bacterial sensory transduction regulator. YbjN is a putative sensory transduction regulator protein found in Proteobacteria. As it is a multi-copy suppressor of the coenzyme A-associated temperature sensitivity in temperature-sensitive mutant strains of Escherichia coli the suggestion is that it both helps CoA-A1 and possibly works as a general stabilizer for some other unstable proteins. This family was expanded to subsume other related families: DUF1790, DUF1821 and DUF2596.	3.65862e-22
CP030865.1\|AXO34031.1\|1796910_1797429_-\|hypothetical-protein	gnl\|CDD\|234759	PRK00431, PRK00431, ADP-ribose-binding protein.	1.02211e-73
CP030865.1\|AXO34014.1\|1778115_1778760_+\|phosphate-transport-system-regulatory-protein-PhoU	gnl\|CDD\|273990	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function. [Regulatory functions, Other, Transport and binding proteins, Anions].	1.74994e-46
CP030865.1\|AXO34020.1\|1784637_1785990_-\|glycosyltransferase-MshA	gnl\|CDD\|132490	TIGR03449, mycothiol_MshA, D-inositol-3-phosphate glycosyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.	0
CP030865.1\|AXO34032.1\|1797430_1798222_-\|membrane-protein	gnl\|CDD\|179898	PRK04949, PRK04949, putative sulfate transport protein CysZ; Validated.	4.16791e-28
CP030865.1\|AXO34027.1\|1792661_1793495_+\|N-Acetyl-D-glucosamine-ABC-transport-system-permease-protein-1	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	8.26259e-75

>CP030865.1|AXO34022.1|1787050_1787833_+|N(5)-glutamine-methyltransferase-PrmC-methylates-polypeptide-chain-release-factors-RF1-and-RF2
MERPLGVATRGTTNPNRLRRVDNWIVETCGDALRAAADPLVVDLGYGATPVTPVELRARLASGVRADVRVVGLEIDPVRVAAALPAADPPGLTFARGGFELAGLRPALVRAFNVLRQYDESEVADAWHTVTGRLAPGGLLVEGTCDELGRLGSWVLLDGTGPRTLTLSAKLTTLESPATLAERLPKALIHRNVPGERIHDLIEALEQAWRSAAGYAPFGPRQRWLRTVEAVKESGWPVQDSPRTWRHGYLTLPWPAVSPR
>CP030865.1|AXO34021.1|1786119_1786935_+|short-chain-dehydrogenase
MTDLITARAPAAGDNGRMTSVAIVTGASSGIGAATARRLAAEGFHVLAAARRTDRLAALVAEIEAAGGTATAVACDVTSDESVAGLAAAAEAAPGPVTLLVNNAGGARGLDPVETADVGDWQWMYDVNVLGTLRVTKALLPALERSGAGTVVIVSSTAGHVVYEGGGGYTAAKHAQTAIAGTLRLELCGRPVRVIEIDPGMVKTEEFGLVRFGGDADRAEAVYAGVAEPLVADDVADCIAWCATRPHHVNIDQLVVRPLAQAAQHKVHRTS
>CP030865.1|AXO34020.1|1784637_1785990_-|glycosyltransferase-MshA
MHTGVGRQRGALPWPRPRRIATLSVHTSPLHQPGTGDAGGMNVYILEVARRLAEADVEVEIFTRATAGDLPPVVEVAPGVSVRHVTAGPLEGLTKEELPGQLCAFTAGVLRAEAARPPGHYDLIHSHYWLSGQVGWLAKERWGVPLVHTAHTLAKVKNARLAAGDRPEPKARVIGEEQVVTEADRLVANTRVEARDLLDRYAAEPDRVAVVEPGVDLDRFRPASGDRDAATRAARRRLGLPADGYVVAFVGRIQPLKAPDVLVRAVAALRERDPALADELTVVICGGPSGSGLDRPTALIELAHALDVADRVRFLPPQTGADLPALYRAADLVAVPSHNESFGLVALEAQACGTPVLAAAVGGLVTAVRDGVSGVLIDGHDPADWARALARLLPDRERRAALGRGAERHAREFSWHRTASGLLAVYGEAITEHRTRLARRLGDPALLCSW
>CP030865.1|AXO34019.1|1784058_1784601_-|uncharacterized-protein
MGAMSRRSEVAALIESVCAERELEWESTGEASYAVTLPGTHKLKTICNLIVGEHALRVEAFVMRQPDERREELWAWLLQRNARMYGVSFSIDAVGDVYLTGRVNLAGVDADELDRLLGSVLTYADESFDSMLEIGFGAAIRREWEWRVKRGESTANLAAFAHLFEPSATAGSPAGGSEPS
>CP030865.1|AXO34018.1|1782808_1783981_-|14-alpha-glucan-branching-enzyme
MAQRNSSGRGTTATRTKRQTGNQTPNTPRVSESEISRMKVDDIRSQLRRRGVSGISALRKPELVKTLARSMRSEGGGGAARRSSGPAGRASATRKSTAARKTTARRATSPAKSAPAARATGARAKATGTRKAAPARAKATSSRATATRAKAATAASSRAKAAPSRAKATPARATAASSRTTTTARAKAAPSRAKATSSRATTARAKAAPSRAKAAPSRAKAAPSRAKAAPARAKAAPARAKAAPARAKAAPAKAATTRKATSARARSAPTRGPASSRSIGSSQLITSLADRPERPGRSLVTRNHEVIQRWARARGAKPATIAGTERGDRPGVLTFNMPGYRESSRIREITWDDWFRTFDLRRLNLIYQEQMRDGRQSNFFRTENPNREDG
>CP030865.1|AXO34017.1|1781183_1782434_+|hypothetical-protein
MRSLRRWWNDTAGGLPATFWYLWSGLLINRAGAFALLFLSLYLTAARGAPPSLAGLVVGAYGIGGAAGTLLGGVLADRWGRRATLLAAHLAAAGLMVALAFSTHLAMIAALATLVGVAHSMPSPAFVAAIVDVVPEARRSRAFNLQFWAFNLGMAVASLLAGVLAEASFTALFLADAGATLAAAVVIALKVPETLTRRPALTPRAVVGRRPGLHTALTDRTFLAFVGLTFLLAVLTMQTSTIMPLAMRADGLRPSAYGLVVALGGALIVAGQLFVPRLIEPYRKSTVLAVSTALMALGFGTLTVADGLPLYLGAAVVWTAGQMLAAPPNAQINADLAPPELRARYQSVFYLTFPAASFVAPALGGLSLEHLGERHWLVVGALGLLAAAGHLLAGPRRERRVAALRAAAAEPVRSAR
>CP030865.1|AXO34016.1|1779777_1781103_+|putative-integral-membrane-transport-protein
MRTVRGWFQDTAGGLPRTFWYLWAGTLINRLGSFVLIFLAIYLTQERGFSASQAGLVIGLWGAGGAVGTTIGGTLTDRWGRRPTLLTAHVGAAGMMIALGLARPLWAVAVGALLLGAFAEAARPAFGAMMVDVVPDKDRLRAFSLNYWAINLGFACAAVLAGFAAQGSYLLLFLVNATTTLVTALIIFAKVGETRGPVTVLPAKGMPAPAGALRTILADRVFLGFVALNLLAALVFLQHISMLPIAMGDSGLSPATYGSVIALNGVLIVFGQLFVPRLIKGRSRSHVLALASLVMGAGFGLTALADTVWLYGLTVLIWTLGEMLNSPSNATLIAELSPAALRGRYQGVFSLSWQLAGAAAPILGGLVREHAGNSTLWLGCAGIGVVAAVAHLISGPARERRAVELRAVGTPVTPVTVTTTPAPEAAEAAATAPADPVRAGS
>CP030865.1|AXO34015.1|1778859_1779636_-|phosphoglycerate-mutase
MIGMTASEGPTVGTLVLLRHGESDWNAKNLFTGWVDVDLTTKGEAEARRGGELLREHDLLPDVVHTSLMRRAIRTAELALNAADRHWIAVRRSWRLNERHYGALQGKDKKQTLDEYGEEQFMLWRRSYDTPPPPIDDADEWSQVGDPRYALLPTELMPRTECLKDVVERMLPYWYDSIVPDILAGRTVLVAAHGNSLRALVKHLDQISDEAIAKLNIPTGIPLRYDLDADLRPQVLGGTYLDPAAAKDAAAAVANQGR
>CP030865.1|AXO34014.1|1778115_1778760_+|phosphate-transport-system-regulatory-protein-PhoU
MRDEFRADLQIVSQLLVDMAEAVRAAMRQATKGLLTADRTAAETVIARDAEIDELYRHVEERVCDLLARQAPVASDLRAMITALHVAADLERMGDLADHVAKTALRRHPSPAVPAELRPVFTDMAGIADRMAEKIGSVLAKPDADVAAELDGDDDAMDDLHRSLFGVLLGDDWPYGVETAIDATLLGRFYERFADHAVNAGEHVVYLITGSTSA
>CP030865.1|AXO34013.1|1776598_1777903_-|phosphate-regulon-sensor-protein-PhoR-(SphS)
MAIAVAVALVTGLVAGATLSGPVEQWRRRRASRGGGTTRRDAGRPTIPDDQQGGLSGLGRKTIDSLRAGVVVLGPDDVPVLVNPAARAMGLLRTGVTPGSIAAHPLIRTLAGQVRRTGVRREIELDLPRGRDGGGDNPLGVHLRAMGLGSGYVSIEAVDVTESHRLARVRRDFVANVSHELKTPIGALQLLAEALVDATEPAADGAPDLSEDMVAARRFAERIQHESTRLGRLVQELLELTRLQGAEPQPAPEPVSVDWVLAEVVDRTRTAAAARRVEIAVGGQRGLTVYGSDSQLATAVANLVENAITYSAEDTTVRVTVTGTDEHVEIAVADQGIGIAPNEVDRVFERFYRADQARSRATGGTGLGLAIVKHIASNHGGRVEVSSTLGGGSTFTLRLPARTPDDLETTLASAGIEAGRPSSGRSDHRKGNTR
>CP030865.1|AXO34023.1|1788185_1789277_-|UDP-N-acetylenolpyruvoylglucosamine-reductase
MSDVYAEPATAGEPTDPATLAHYTTLRLGGPAGRLEIAEDAAQIVRKVQEAEAREQAVLVLAGGSNVVIGDQGFPGAVVLVRSRGFQAVAEDGDTVTVRVQAGEPWDDFVAATVERGWSGLECLSGIPGSAGATPIQNVGAYGQEVAETIVAVEAYDRTERRVVRIAAADCGFVYRGSIFKYSDRWVVLSVDFRLTRSPRSGPVRYAELARALGVEVGDRVPLAEARSTVRRLRAGKGMVLDPADPDTWSVGSFFTNPVLPGEVFEQVRERATDLGEPPHWPGVDGMVKVSAAWLIDKAGFGKGYAGPEGVAISSKHTLALTNHSGAASTAALVALAREIRDGVESRFGVTLHPEPVLINCTI
>CP030865.1|AXO34024.1|1789347_1790103_+|hypothetical-protein
MSRLHHTKDFWIGALRTEGPAFAAAVSEAPPETPVLSCPGWTVTDLAHHLARVYVWAGTVLTAGGTTRPERHDPEPPADLTPAQWYVREYERISALLEATDPETPAWNFAPQPKKAAFWPRRLAHETAVHRWDAQLAIGAGDPIEAKLAADGVSEVLDTWLPAGRRVRPGQWHGVVQLSATDAAQEWYLRLRGEGVALLDTATILDHDDHRARAQMAGTASDLLLALMGRISFDALDVAGDRGLLDGLRVG
>CP030865.1|AXO34025.1|1790296_1791607_+|putative-sugar-binding-secreted-protein
MLTFTRRRLAAVALVAATALLGTTACGGGDDEAAADGPITLTVDVFGQFGYADLYQEYMASHPGVKIVERGTGGNLDEYSPKLTQWLAAGKGAGDVVAIEEGLLVEYKANPQNFVNLLDHGAADLKGNFLDWKWNQGLTADGKQLIGLGTDVGGMAMCYRTDLFAKAGLPTDREAVSKLWPTWQDYIKVGEQFTAKKTGASFLDAATNTFNTILLQTAGNSNGYSYYDTDNKLVVGSNPAVKQAYDTTMDIIDSGLSGKYGSWSEEWVSAFKQSKFATIACPAWMTGVIEGNAGVGAKGKWDIAQVPGNGGNWGGSFLAVPKQSKHQAEAIELAKFLTSAKGQIGAFKAKGPLPSSPQALEDPAIVDSKNAYFSEAPVGKIFAEGAKSLKPVYMGPKNQAVRTEVENAVRSVELGKRSPEQGWTDAVANAEKAAAK
>CP030865.1|AXO34026.1|1791675_1792665_+|binding-protein-dependent-transport-systems-inner-membrane-component
MAVQLDARPPVAPAPRPTRPGLGNRLSRFDTKYSPYLFIAPFFLLFGVFGAYPLAYTFWVSLHDWDLLGAEHPFIGFDNYTQLLADSDFWHSVVNTLGIFVISTVPQLLAALWLANLLNRQLRARTTWRMAVLIPNVTSTAAVAIVFAVLFGREFGMINWLLDHVGISAIDWKANRFAAWVAISTMVDWRWTGYNALIFLAAMQAIPRDLYESASIDGAGRARQFWSITVPLLKPTIIFAVIISTIGGLQLFTEPRMFNSGTNAIRGGPLRESQTVTMYMFENAFAPHYNFGYGSAVAWLLFALIAVVAAINVLLLRRLGGGSRKEVSR
>CP030865.1|AXO34027.1|1792661_1793495_+|N-Acetyl-D-glucosamine-ABC-transport-system-permease-protein-1
MTRLWSASRLTYLALTLSAILSIFPIYWMFVVASRTSDTMGQVPPPLTPGGNLGANIARLFDNTDAYFLTGLINSAIVATTVTISVVFFSTVAGFAFAKLRFRGRNALLLVIVATMMVPTQLGVIPLYLLMTKLNWNDRLPAVIVPALVTGFGVFMMRQYAGQAVSTELIEAARMDGCNTARIYWNVVLPALRPAAAVLGLLTFMTTWNDFLWPYAVLNDPENPTVQLSLRALSDGYYQDMSQVFTGTAIATLPLLLVFIVFGRQIIGGIMEGAVKA
>CP030865.1|AXO34028.1|1793491_1794859_+|beta-glucosidase
MSNVRFPEGFVWGGATAAYQIEGAARDYGRGPSIWDTFSRTPGAVFQGHTGDVACDHYHRYAEDVALMAELGLRAYRFSVSWPRVRPDGTGPVEPRGLDFYDRLTDALLAAGLDPIVTLYHWDLPQALEDRGGWTVRETAEHFAQYALAVHGRLGDRVRTWTTLNEPWCSAYLGYGSGVHAPGRRDAGDAFRAVHHLLLGHGLAARALRSAGVETLGITLNLADVQPADAASAADAEAVKLVDGLHNRIFLDPLTGAGYPADVLAHVSRIVTPDFVRDGDEKLIAAPLDLLGLNYYAPTYVAGRPDGAGGDAYPGTAGAVEFLPPAGPLTDMGWSIEPAGLTRLLERVAADYPGLPLVITENGGAFPDTDVDEQGGVADADRVAYLDGHLRAAHEAIARGVDLRGYLVWSVLDNFEWAEGYRKRFGIVHVDYLTQRRTPKRSARWYQEVIARNGL
>CP030865.1|AXO34029.1|1794878_1795886_+|HTH-type-transcriptional-regulator-celR
MTTAQRPTLEAVARLAGVSRATVSRVVNGSTTVAEPIRQAVRRAVEELGYVPNLAARSLVTQRTDSVALVLPEAATRVFSDDQVFPGIIRGAAQELEAADKQLVLMLAGSPAGHERVERYTTGRHVDGVLFASLHGEDPLPGRLARLGIPVVCSGRPLDGADVPYVDVDHEGGVSTAVQHLITSGRRRIATIAGPQDMVAGIERLIGYRSAISEAGLPELVAYGDFTRESGTAAMRELLAADPELDAVFAASDLMAHAALRTLREAGRRVPEDVAVIGFDDIETAAYTEPPLTTVRQPIVELGRSMTRQLLRIAAGETVEQTLVLPTELVLRESA
>CP030865.1|AXO34030.1|1796012_1796918_+|phosphinothricin-acetyltransferase
MSAAEIRPARLDDAPAVVALRALVYPYLVRGVESTRRMITEPPPGEGWAGWVAEADGQIVGWVSAYRNTQTSTPGVGEIALLHVHPEHRRQGAGTALFDTALGHLRTLGTTRVLTHARTESLPFAQRHGFTASRELRYSALDLTTAPPMPQAPPGVRLVSAAGLDPRLVHRVDAESSRDEPGDVPTDSLGFDLWRHECWDNPGLDREASTLAEVDGELVALSLVKRDGDRMWSDFTGTLSAYRGRGLARLAKHAALHAAAARGVRTAYTSNDEANAPMLAVNERLGYRPVDSQWSCRRKLN
>CP030865.1|AXO34031.1|1796910_1797429_-|hypothetical-protein
MDTVLIEGDITAQQVDAIVNAANSSLLGGGGVDGAIHRRGGPAILAECEALRASRYGRGLPTGQAVATTAGNLPARWVVHTVGPVFSPGEDRAALLRDCYANSLRIADGLGATRIAFPLISAGIYGWPVEDAVAQALTVLHAATPAHVTEARLVLFGADTYAAAVRVAAGLS
>CP030865.1|AXO34032.1|1797430_1798222_-|membrane-protein
MNASRTVAPVTGAATRFLGGAGLLLRGFGMYVRSPKLMLLGVIPALITGALYVALFATLLYFVDDLAGWLTPFADDWSSPWRGLLRVAAGLAVVGVAGLVGVLTFTAVTLVIGDPFYEAISERVEDRLGGTPGAVDVPFWSSLRRSLADSLRLVALSALIGVPLFAAGFIPVVGQTVVPVVGALVGGWFLALELVGAPFYRRGMRLPDRRVRLRADRPTALGFGVAVFLCFLIPLGAVLVMPAAVAGAALLARRSLGQPIEES

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Crispr_ID: CP030865_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030865_5

2291194-2291272

Orphan

Consensus_repeat	Method
GCGGGAGCGGCACGATGAGCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030865_5

>merge|CP030865|5|2291194-2291272|CRISPRCasFinder
GCGGGAGCGGCACGATGAGCGCGCCGGTACGGATCCCGGCTGTCCGCCGGCGGCGCGCCGGAGCGGCACGATGAGCGCG

>CP030865|5|4|2291194-2291272|CRISPRCasFinder
GCGGGAGCGGCACGATGAGCGCG	CCGGTACGGATCCCGGCTGTCCGCCGGCGGCGC
GCCGGAGCGGCACGATGAGCGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP030865.1\|AXO34480.1\|2298239_2298473_+\|hypothetical-protein	unknown	unknown	unknown
CP030865.1\|AXO34465.1\|2276564_2279675_-\|signal-transduction-response-regulator/disease-resistance-domain-containing-protein	unknown	unknown	gnl\|CDD\|226418
CP030865.1\|AXO34486.1\|2305081_2305618_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379112
CP030865.1\|AXO34477.1\|2292155_2292665_+\|MutT/nudix-family-protein	unknown	unknown	gnl\|CDD\|240032
CP030865.1\|AXO34471.1\|2285836_2286427_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|334450
CP030865.1\|AXO34482.1\|2298499_2299696_-\|xylose-responsive-transcription-regulator	unknown	unknown	gnl\|CDD\|224851
CP030865.1\|AXO34474.1\|2289186_2289849_+\|regulatory-protein-TetR-family	unknown	unknown	gnl\|CDD\|366102
CP030865.1\|AXO34469.1\|2283782_2284199_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379162
CP030865.1\|AXO34468.1\|2282280_2282820_+\|cytoplasmic-membrane-protein-FsxA	unknown	unknown	gnl\|CDD\|377238
CP030865.1\|AXO34484.1\|2302223_2304233_+\|beta-galactosidase	unknown	unknown	gnl\|CDD\|367090
CP030865.1\|AXO34472.1\|2286487_2287747_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173412
CP030865.1\|AXO34467.1\|2281492_2282227_+\|dolichol-phosphate-mannosyltransferase	unknown	unknown	gnl\|CDD\|133062
CP030865.1\|AXO34481.1\|2295851_2298260_-\|beta-glucosidase	unknown	unknown	gnl\|CDD\|224389
CP030865.1\|AXO34485.1\|2304278_2304929_-\|lysine-exporter-protein-(LysE/YggA)	unknown	unknown	gnl\|CDD\|224199
CP030865.1\|AXO34478.1\|2292661_2294839_-\|putative-large-secreted-protein	unknown	unknown	gnl\|CDD\|379625
CP030865.1\|AXO34466.1\|2279804_2281409_+\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|143595
CP030865.1\|AXO34473.1\|2287759_2289112_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379134
CP030865.1\|AXO34483.1\|2299744_2302108_-\|alpha-xylosidase	unknown	unknown	gnl\|CDD\|236731
CP030865.1\|AXO34479.1\|2294835_2295855_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
CP030865.1\|AXO34470.1\|2284333_2285830_+\|di-/tripeptide-transporter	unknown	unknown	gnl\|CDD\|225646

Protein	Function_ID	Function_description	E-value
CP030865.1\|AXO34465.1\|2276564_2279675_-\|signal-transduction-response-regulator/disease-resistance-domain-containing-protein	gnl\|CDD\|226418	COG3903, COG3903, Predicted ATPase [General function prediction only].	1.1631e-48
CP030865.1\|AXO34486.1\|2305081_2305618_+\|hypothetical-protein	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.96027e-24
CP030865.1\|AXO34477.1\|2292155_2292665_+\|MutT/nudix-family-protein	gnl\|CDD\|240032	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.21861e-46
CP030865.1\|AXO34471.1\|2285836_2286427_-\|hypothetical-protein	gnl\|CDD\|334450	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase. Family of domains with putative PNPOx function. Family members were predicted to encode pyridoxamine 5'-phosphate oxidase, based on sequence similarity. However, there is no experimental data to validate the predicted activity and purified proteins, such as yeast YLR456W and its paralogs, do not possess this activity, nor do they bind to flavin mononucleotide (FMN). To date, the only time functional oxidase activity has been experimentally demonstrated is when the sequences contain both pfam01243 and pfam10590. Moreover, some of the family members that contain both domains have been shown to be involved in phenazine biosynthesis. While some molecular function has been experimentally validated for the proteins containing both domains, the role performed by each domain on its own is unknown.	1.37286e-10
CP030865.1\|AXO34482.1\|2298499_2299696_-\|xylose-responsive-transcription-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.18814e-44
CP030865.1\|AXO34474.1\|2289186_2289849_+\|regulatory-protein-TetR-family	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.41699e-10
CP030865.1\|AXO34469.1\|2283782_2284199_-\|hypothetical-protein	gnl\|CDD\|379162	pfam13397, RbpA, RNA polymerase-binding protein. RbpA is a family bacterial RNA polymerase-binding proteins. RbpA acts as a transcription factor by binding to the sigma subunit of RNA polymerase.	1.84125e-52
CP030865.1\|AXO34468.1\|2282280_2282820_+\|cytoplasmic-membrane-protein-FsxA	gnl\|CDD\|377238	pfam04186, FxsA, FxsA cytoplasmic membrane protein. This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its over-expression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.	2.35285e-30
CP030865.1\|AXO34484.1\|2302223_2304233_+\|beta-galactosidase	gnl\|CDD\|367090	pfam02449, Glyco_hydro_42, Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.	5.27513e-151
CP030865.1\|AXO34472.1\|2286487_2287747_-\|hypothetical-protein	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	2.15264e-12
CP030865.1\|AXO34467.1\|2281492_2282227_+\|dolichol-phosphate-mannosyltransferase	gnl\|CDD\|133062	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily.	8.61471e-99
CP030865.1\|AXO34481.1\|2295851_2298260_-\|beta-glucosidase	gnl\|CDD\|224389	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism].	5.94022e-56
CP030865.1\|AXO34485.1\|2304278_2304929_-\|lysine-exporter-protein-(LysE/YggA)	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.2435e-41
CP030865.1\|AXO34478.1\|2292661_2294839_-\|putative-large-secreted-protein	gnl\|CDD\|379625	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain. This domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain.	1.75304e-47
CP030865.1\|AXO34466.1\|2279804_2281409_+\|apolipoprotein-N-acyltransferase	gnl\|CDD\|143595	cd07571, ALP_N-acyl_transferase, Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.	8.66162e-86
CP030865.1\|AXO34473.1\|2287759_2289112_-\|hypothetical-protein	gnl\|CDD\|379134	pfam13347, MFS_2, MFS/sugar transport protein. This family is part of the major facilitator superfamily of membrane transport proteins.	8.13012e-58
CP030865.1\|AXO34483.1\|2299744_2302108_-\|alpha-xylosidase	gnl\|CDD\|236731	PRK10658, PRK10658, putative alpha-glucosidase; Provisional.	0
CP030865.1\|AXO34479.1\|2294835_2295855_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.12177e-61
CP030865.1\|AXO34470.1\|2284333_2285830_+\|di-/tripeptide-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	6.31712e-148

>CP030865.1|AXO34474.1|2289186_2289849_+|regulatory-protein-TetR-family
MTMPRRRPGRPRRDDQRPTRDLVLAAATALFAERGFAAVSVRDVAAAAGVDAATVVHHTGTKAQLYDACFARVFSAEREVIEAAGERARAALSAGPHDALRALHDLLDVFVDFLEDRPETTALWLRRWLEPQRHGELDRRYAAPLYGLVEELLVAAAEAGALTEPTPHVTVRSLVWAVHGHVVALAAGSGSDARERREFRAFVHRFLDALYAGAPPDTRS
>CP030865.1|AXO34473.1|2287759_2289112_-|hypothetical-protein
MTGLDQRSDALTLPRGPLAGFATGSLGMGVWVTVPGLLLLYFLTDVLAVAPWLAGLTLLLPKIADVLLHPWIGHLCDVEQARRGHRRRLLLAGCALPLAFAALFAVPGGLTGAGAAGWVAVFFVAGNLLFAAYQVPYLATPADLRIGYHERTRLMAFRMVVLTLGILVSGLLAPLLAGGDDATRDGYLLMGVVLAAGMLAAMLVGVAGIGRLRRTAADAVTPHGPGGWRALTASLRDRQFRWLVGAYLAMSTTTHLVLAGVPYYAEYELGRPGLTTVLVAAFVAPALLVTPLWLTVARRIGKQRALLAAQAAFAAGSLVLAIGRPAGLPVLVAAVAVLGVAFAGMQLLPFSMLPDVIRAGGGAERAGTYTGVWTATEATGAALGPYAYALCLTAGGFVASTAGQSVTQSPAALDALRYGFGLLPAAVMVVAVLLQRRYTLDGAARADAAG
>CP030865.1|AXO34472.1|2286487_2287747_-|hypothetical-protein
MDAEPATDIRPCAHCGRDVPQRVGAGRPFRYCRDNDGACQRAARNSRMRHRNSPGLPGQVARTWEAVDRLDQIVETLTEALHAELSPAGVERQLAELRAETSAQVAAAHAERDEARREAEDATATAARERQQARAAYAERDAAADRAERAEASAAAAAERATAAGDARDAARAEAGAAQALRVQAERDRDAARHDLRTVRAERDAERRRVTELTAERDTARADAERATRSATEALDRAEQSRAEADRVRADAQAAQGRAIEAERAARTAAERADAEATATRQARAERERADAARADVEAALERVRAEASAAVEAVRAEAAAAVERSRAEAAGTVDRFRGDVAAAVEQAAARTAERDALAAELADARRAVSAAEARAAELAARTAVIEADRDAAQRRAGQLADQVSDLATALARLGTRTG
>CP030865.1|AXO34471.1|2285836_2286427_-|hypothetical-protein
MGKTYERIDGRLRDFIEAQPMFFVATAPLSGDGTVNLSPKGLRGCFAVLDEHTVAYLDFAGSNAETIAHLRENGRITLMWCAFTGPPNIVRVHGRGEPVFRDDSRWAGLLRHFPDIDPGPHGLRAVIVAHAELIRDTCGYAVPFMTYDADRDLHERRFAREDDTSLSAYFAGKDHVATSIDGLPGLPLPLPPTPVV
>CP030865.1|AXO34470.1|2284333_2285830_+|di-/tripeptide-transporter
MPEVTMSSDAPVGARPPAGKTFFGHPRALSTLFLTEMWERFSFYGMRAILVLYLTAAVADGGLDIGESSANAVYGTYNAMVYLMALPGGWVADRLIGARRSVLWGGVVIAAGHYVMAIPTGWSVFAGMALIVLGTGLLKPNISTMVGDLYERDSPRRDAGFSIFYMGINLGAFIAPLITGFLGEKINWHLGFGAAAVGMTFGVLQYVLGRRNLGDAGARPADPLLGADRRRALTRIGVASVVVLAALLVLLLAGWFTVDTVVNLLTVVTVLVTVGYFARILTDREISDTERSRMKAYVWLFVFAASFWLIYDQAGSVLNIFAADQTDRSVGGFTFPASWLQSVNPILIIIGAPLAAALWLKLGHRVSTPTKFAVGLVLNGLSFVLMAAAARAAVGGDLVSPLWLVAVYAIQVAGELSLSPVGLSATTKLAPVKYASQMLGLWFLATAVGDAIGGQVARLAGAWSQPVYFLTFGLASVVLGLAAVMFTRQIRHLMAGIH
>CP030865.1|AXO34469.1|2283782_2284199_-|hypothetical-protein
MGGEWANGDRPLHLKTSTTDEGKSIMGERMLRGSRLGAVSYESDRNTELAPRQTREYLCAKGHQFEVPFAVDAEVPTTWECKFDGSVARLVDGTEPEQKKAKPPRTHWDMLLERRSIAELEDILAERLQEVRTRRGRA
>CP030865.1|AXO34468.1|2282280_2282820_+|cytoplasmic-membrane-protein-FsxA
MRRGLKYVPPALLLLTLLELGVFVLVGRAVGFGAAVLLVFGASLLGLVLLRREGMRAWRGFRAAAQAGRPPGPEVTDGLVGLLGALLLAMPGLFSGVVGLLLLLPPLRRVAGGGVRRATERRVSSMVAGDLFGPRRVRVYRGAPQPTPQPTPSPSPGPAPSPQPVTDPGKAIEGEIVDR
>CP030865.1|AXO34467.1|2281492_2282227_+|dolichol-phosphate-mannosyltransferase
MVVPTYNEADNVERIVARVRAAAPAVDVLVADDNSPDGTGAIADTLAGNDPRVHVLHRAGKEGLGAAYLAGFAWARARGYDAVVEMDADGSHAPEDLPALLDAARDADVVIGSRWTRGARVLNWPWQRLLLSRVGNLYARLALGMPVSDATGGYRVYRASALDAIDLDSVRSQGYAFQVELSRLAHRAGVRIVEVPITFAEREHGDSKMSPLIVAEALWRVTRWGVRDRLATVQARPDALARWP
>CP030865.1|AXO34466.1|2279804_2281409_+|apolipoprotein-N-acyltransferase
MTTLDREQPRATDGARGDGGARPLPLTLAVPAAVLAGVALLLAFPPYGMWPLAPVGVALLAAAAHRRRLRAGAGLGFLTGVALFAPLLEWTNLHTGYLPWALLSLLQAAYLALLGAATAWVSPLADRNRAAWPLLTGVLWVAQEALRDRTPFGGFPWGRLAFSQDTSPLLRLAALGGAPLVTFAVAVAGGILVAVAWRDWRRAPGQWRPVAGLTAALVALLAAGPAVPAEVRGAGGTVTVAIVQGNVPRLGLDFNAQRQAVLNNHVDATLELAERVTEGGQPRPDLVVWPENSSDIDPLRNPGAGERIAQAADAIGAPILVGAVLAGPEPGQVRNVGLLWRPGTGVDLDQTYVKRHPVPFAEYVPLRSVARMVSSQVDRVSSDFVPGDRPGVVDAGAAVLGDVICFEVAYDGIVRDTVTGGAQLLVVQTNNATFDVAEARQQLAMVRLRAVEHGRAALMASTVGVSGFVSPDGRVDGATGFNTAAVVVRQMELGNGRTPATTAGVWPEVALTALAVAALAGAAVLRRRREVAPG
>CP030865.1|AXO34465.1|2276564_2279675_-|signal-transduction-response-regulator/disease-resistance-domain-containing-protein
MRFGVLGATQAYAADGSALPVAGDRLRALLVLLLLDADRTVPPRRLIDGVYGDRPPEQAANALQSQVSRLRRLLPGAHIEFGPAGYRLAVDPQRVDVHRFTRLASAGRAALADGDPRGAAALLREALDLWRGEPLADVTGAPFADAEAARLRQLRLAAIEDRVAADLALAPPGAPLIAELRALVAAHPLRERLHGLLMRALHGAGSRAEALAAYADARRVLAEELGADPSAELVALHATLLRDDPAPPARLPSPLTSFVGRERELRRVEELLASARLVTLHGPGGAGKTRLATTAAARHDGAVCLVELAAVTPGSPVAPAVLTALDLRDAGLRAPDGPRDLTDRLVAALAGRRLLLVLDNCEHVIDDAARLTARLLAAAPGLRVLATSREPLGLTGEALCPVGGLAVPDAPGTPETAAAYPAVRLFADRAADVAPGFALDADTTPAVLRICRTLDGLPLALELAAARLRALPVSQVAARLDDRFRLLRRGDRTAAPRHRTLEAVVGWSWDLLDAPERLLAARMSVFAGAADLAAVQAVCAPDAGDVLDVLTGLVDKSLVEATGGRYRMLETIREFTAARLAEHGETGRMGDAHAAYFLDLAQAGDAGLRGGGQERWLRRLDAARDDLHAALRHADTATGLRLVAALAFYWWLRGLRGEGAALARRLVDRLDGPPDGLAEEYALALLIATLAGGGERGEVDAASRILWTMARPPRHPFLLYLSGMASGPPSPQDAAALHEQAVRDRLLGTDPWSRALGLLGTAMVSLLHNRHTQARAELDGALAGFRALDDRWGMIVTLSTHAEAAYRTGDVASAAAPMAEALELAEQLGSTLDLAELLRTRADGRLAAGDLTGAAEDFGRVRRIAGPAGAPELVAAAYLGLGEIARRDGDPQRARALCERAVAHCPSGWFGADVVRLAALVTLGQLAEATGDPAAARAHYRQVLTAGVGVWDVPVVAAAADGLAGPLLRDGDPESAARLLGAAAALLAGTGAADAPAGTPTAVTLREHLGEAAFATAYARGANLPRQRALALVDGR
>CP030865.1|AXO34477.1|2292155_2292665_+|MutT/nudix-family-protein
MAVSPYIARLRGHVGHDLLMLYGVSGVVTDDEGRVLLARRGDNGHWSVPAGTVDPGEQPADALVREVHEETGVKVAIDRLAGVATHPVVYPNGDACEYLNIWFRCRAIGGAPTADGDESLAVAWFAPDALPALDDWARLRIGTALTDDAPPWFTAPGETHPALHQPDSL
>CP030865.1|AXO34478.1|2292661_2294839_-|putative-large-secreted-protein
MTAHRIHDTAPAADWTDAFLTGNGELGLMVHGQPHTERIVVNHHRLVLPNGTRHARAPELAAPMPDIRALVLAGRRAEAARLLTGGRELQWTQSFHPGYALTVDAPPGPVRDYRRDTDFTTGEVTVRWSGGRRRCFASRADGVAVLHLDQGDCVVGATGELPGRPSGVVYEHAAYRRDRLVFLRVRVRYPEAGGAYGFEGLTLLRGDVSVDGDRVRVRGPALLTTVVDRPEEPPWRTRDSERRLTALAGHYDELLARHLPRHRGPYTRVSLDLGVPGADQALPVGELLARQTAAPHRLDPALLERLFHSGRYLLFSASGVLPPRLTGLWLGSWDAAWAGDFTTDANLNLQLAGANVGALPEVTAAHARLVAAQVDHWRANARAVYGARGLLAPSRTDGEHGHLFHVHPDWPFTAWLAGADWLLHPLHEHHLVTGEPLGEVAGWLAEVADFFADVLTDVDGQPALLPSYSPETGPYDDTGRTAPVAINATMDVAAARHALRLAAEVTGDDRWAGVLLPGYLVDGRGALAEWAWPGSTGVEEHRHVSHLYPVWPLDEINRDDTPELAVAAHRALTLRGDEDGSAHGSLHRALAAARLRDGGLVAANLGKILGADMFFRSLMSAHNPGRTTYNADAAHALPAVLIESLVQSRPGVLRLLPAPLPGLPTGTLRGVTGRGRVTVEELTWAPGQVRARLVSPVAQRVVVHAPGNRRAVDLVPGRPCEVVFG
>CP030865.1|AXO34479.1|2294835_2295855_-|LacI-family-transcriptional-regulator
MSGRVPGEQVTIADVARHAGVAASTVSYVLSGKRTISATTRGRVLASIRALGYHPHAGARALASRRANVIALVLPLRTGMQVPVVMRFATAVVTTARRYDHDVLLVTADEGPAGLHRIAGSALVDGVLLMDVELEDSRVPLLRELALPGVLIGHPADSTGLACVDLDFRRAGELCVEHLAAAGHRRIALLGAPAAVYDRGTGFAHRTRAGVRAAAELLGVDAVTRSCEEGPAAVRRDLEALFADHPDVSGLVVQNESAVGPVLATLPLLGRRVPRDVSVVAICPDELAEQSALTCVPVPAEEVGRQAVALLMRRLSDEAVPEVTLLEPRLVVRDTSAGR
>CP030865.1|AXO34481.1|2295851_2298260_-|beta-glucosidase
MTDPVPHRPDDLLARLTLPEKLGLLHQWQAPVPRLGLRAFRTGTEALHGVAWLGTATVFPQAVGLAASWNPDLIRAVGAAVGDEVRVKHRADPVRVGLNVWAPVVNPLRDPRWGRNEEGWSEDPWLTGRLATAYALGLRGDHPIRLRTAPTLKHFLGYNNETDRATTSSDLPPRVLHEYELPAFRAPLAAGAAVAVMASYNLVDGVPAHLSPLIEGELRGYADDDIMVVGDAGAVGNIAGVQEYLPDHVAGFSAALRAGIDSFTEDDEDSAPTVERLTEALARGLIEPSHVDRAVRRILSVRSRLGDLDPDPHDDVPPHTLDSLAHRELAREAARQSVVLLRNDGLLPLRPGTRVAVLGPLADTVLTDWYSGTPPYTISAYAGLLGRLPEVTTHPGNDRITLHVGDRAVRLDGDGPLALGDTAAEFEVVDWGQDVVALRAVDAGRYVGADDAGALVADRDGPGGWVVRETFRLDHRADGTALLHHLATGRHVGVALDGTLSVTTGDPAVFTVTLRADGAADAAALAAAADVAVVVLGNHPMVNGRETEDRADLALPTGQEELLRAVHAANPRTVLALTSSYPYAVGWAQEHLPAVLWSAHGGQEHGNGLADVLLGAADPGGRLTQTWYADTAELPDLLDYDVIGADTTYLYHRGEPLYPFGHGLSYAAFDYADLRLSTVAARAGEEVEVSVEVTNTGRRPGTEVVQLYTRQRRSRVKQPLRQLRDFARVTLDPGCAARVTMRLRTADLTWWDETRAAMVVEDATHSVLVGRSARDIRLVGALTVTGGDATAEPADRSCGAAR
>CP030865.1|AXO34480.1|2298239_2298473_+|hypothetical-protein
MGDGVGHGGRLRSAYVPPLSRRSASTTVPVTGRRVREKGWWSVSAGSARSGGEALRQPPKNTPLSGLPGPGTRRYRG
>CP030865.1|AXO34482.1|2298499_2299696_-|xylose-responsive-transcription-regulator
MISIDRPTADLGDVRVTNRAVVLRHVRRHAPCSRADVAAHTGLNKATVSSLVGELIEHGLLRETGLTENRVGRPATMLVLDGARYVGLGLRVGADELVAVAAGLDGDPVLTWRRAFPAATAGPEETVKALAALTRRAVTRIGADRTVLGLTVAVPGLVNPDGDVPVAPTLGWRGVPLAASVRRALRDPGFPVAVDTEANLAVLAEQRHGPYAGTADLVHLTGGPVIGAGLISGGRLLRGGRGFAGDVGHLPLAADGPPCVCGRRGCLTALLGVDAVIGRLLPDAGPVTDHLPEIERIQALARAGDEPARTGLTEIGRLLGQAVSVLAGLLDPDVVVVGGHLAALAPWLLPAAHAELAARAPVPPGVRLEASTLGSAAGALGGATAALATVEAGRLPAV
>CP030865.1|AXO34483.1|2299744_2302108_-|alpha-xylosidase
MPYRPPLVPYETFVADPPDLPVRAPGEEGADDVLRAEVAATDAHGVTLTATCASGRTLVARVEAAGDGIIRVRLADDPSVRSRSARALTLVHPQRHPATVTVTDGRVRVAAGGVVAELSLDPWGLRFRTPDGRLLLASDTGTRDISGRRRTLPLGRSTVDGEPAAWHESFVAPGDERFVGFGEKFTPLDKRGQRPLMWNFDAFGGESDRSHKNVPFYLSDRGYGVLVDSGLPVQFDVCASTHSSVQILVPDDLLDYYVLAGPTPAQVLDRLDALTGRPYLPPRWAFGAWISSGFFPDSQQRVLERARRIREDDIPCDVLHLDCYWQVAGHWSDLRWDADAFPDPDGMLKDLTEQGFRVCLWMNPYLMTGSPLYAEAEAAGYFLRRPDGSTYVADTWHGSYPECAIVDLTDPAAVRWFQDLLRPLLAQGVAVFKTDFAEGVPADAVAHNGMTGVELHNVYALMFNDVVADVTEEVAGHRTVWARSSYLGGQRHSAQWSGDVNATWPGMASTLRGGLSHGLSGVPFWSHDTGGFHGTPEPDLYVRWTQFGALSPLVRLHGTTSRLPWEFPPEAQRHAVDALRLRYRLLPYLWSAAVDSARSGSPMMRALLVDTPDDPAAWTTDLQYRLGSDLLVAPVLDPSGERAVYLPTGEDWLDAYTGQRHTGGRHLRVGVPLDRLPLYVRHGALIPTVAPAPTVGTGPFRDVTLVAWGGVDGVSVVRDPDGDTTITAVRDGDTLRVRVDGPLDVRRVSVVGTDPPRRVVLDGESIPVTPFVPWFAGRAHPAGIAPI
>CP030865.1|AXO34484.1|2302223_2304233_+|beta-galactosidase
MTTKAPWSDGPLCYGGDWNPEQWPPHVWREDIALMRDAGVNLVTVGVFAWSRLEPEPGRHTLDWLDRILDLLHPAGIRAALATPTASPPPWFSLRHPDALPVTADGVRLTHGSRDTYCAAAPAYRDAARSIAGVLATRYADHPALALWHVHNEYGTTCHCPHAEAAFRRWLTGRYGDLDALNDAWVTSFWSQHYTDWAQVGTPRATQYLANPGQLLDFRRFWSDTLLSAYTEQRALLRAANPAVPVTTNCVLGDWVPIDHARWAREVDVVTIDHYPTTADLGAEEQTAFAADLARGWARHGAGHAAPWLLAESAPNQIHTAGRMHTKEPGRMTRHSLAHVARGSAGVMFFQWRAPAGGAERFHSAVVSHAGADTRVFREATDLGAALARLAGTAPGRVEASVAIAYDAASGWALRHPGMPRAGLDHPGEAAAAHRALWHAGVAADVVPPGTPLDGARLLVLPALYLASDATIDWVRRHVDAGGHLLVTWLSGVANEHARVRLGGYPGAYRDLLGVRVEEFHPLADDEEVPLTGGGTGRIWSERVHLAGAETVRAYAGGVLDGRPAITRRRVGDAYVWYVSTRPDDDTYRRLLTEAARLAGATPTCPDAPPGVEAVRRHDTDGSLLYLLNHTDRPQRVPAAGFELLTGATVDGVLTVAPGGVAVVREEPS
>CP030865.1|AXO34485.1|2304278_2304929_-|lysine-exporter-protein-(LysE/YggA)
MVTVGAVMGIALVALGLVLTPGPNMVYLVSRSVTQGRRAGLVSLLGVAVGFLVYLAAAVAGIATVFVLVPPLYTAVKLAGAAYLLWLAWRTLRPGGTSAFTPTPLPPDRPRRLFTMGLVTNLLNPKIAILYVSLLPQFVDPARGHVAVQSLLLGLTQIVVALTVNALIVLSAGSVSAFLTRRPGWARLQRWVMGTVLAALAVRIAADRSRAAVAAP
>CP030865.1|AXO34486.1|2305081_2305618_+|hypothetical-protein
MSLVLSAPATPTAPGLLLRPWRDGDVDALIEAYRDPVLRAWTSYPVTGPAEARAFLRRSRQGWAAADRFSFAVLEGERLVACVVLKGVRPGRPAAEVGYWTAAPARGRGVAPRAVEAVTGWAFARFAATGLTHLELLHQVDNPASCRVAEKSGYAFAEVLPARPPYPRDGHRHVRHLP

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Crispr_ID: CP030865_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030865_6

3725903-3725989

Orphan

Consensus_repeat	Method
CTGCGAGCCCCGCAGTCGCGAACTGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030865_6

>merge|CP030865|6|3725903-3725989|CRISPRCasFinder
CTGCGAGCCCCGCAGTCGCGAACTGAGGGGATGCCGTGAGCGCGAGGAGTGAGCCGGGTCTGCGAGCCCCGCAGTCGCGAACTGAGG

>CP030865|6|5|3725903-3725989|CRISPRCasFinder
CTGCGAGCCCCGCAGTCGCGAACTGAGG	GGATGCCGTGAGCGCGAGGAGTGAGCCGGGT
CTGCGAGCCCCGCAGTCGCGAACTGAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP030865.1\|AXO35604.1\|3731050_3731395_-\|putative-electron-transport-protein	unknown	unknown	gnl\|CDD\|379162
CP030865.1\|AXO35608.1\|3733869_3734874_-\|NAD-dependent-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
CP030865.1\|AXO35602.1\|3729126_3730143_+\|OpcA	unknown	unknown	gnl\|CDD\|378404
CP030865.1\|AXO35605.1\|3731525_3731786_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|235881
CP030865.1\|AXO35607.1\|3732673_3733873_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
CP030865.1\|AXO35599.1\|3724609_3725797_+\|transaldolase	unknown	unknown	gnl\|CDD\|235117
CP030865.1\|AXO35601.1\|3727561_3729130_+\|glucose-6-phosphate-1-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
CP030865.1\|AXO35598.1\|3722463_3724602_+\|transketolase	unknown	unknown	gnl\|CDD\|223100
CP030865.1\|AXO35609.1\|3735138_3736119_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273194
CP030865.1\|AXO35592.1\|3716155_3716932_-\|iron-sulfur-cluster-regulator-SufR	unknown	unknown	gnl\|CDD\|225222
CP030865.1\|AXO35593.1\|3717047_3717992_+\|cytochrome-oxidase-assembly-protein	unknown	unknown	gnl\|CDD\|224528
CP030865.1\|AXO35595.1\|3719763_3720678_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223267
CP030865.1\|AXO35596.1\|3720687_3721020_-\|hypothetical-protein	unknown	unknown	unknown
CP030865.1\|AXO35606.1\|3731881_3732673_-\|triosephosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
CP030865.1\|AXO35594.1\|3718065_3719733_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379079
CP030865.1\|AXO35603.1\|3730182_3730983_+\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|376480
CP030865.1\|AXO35590.1\|3713529_3714672_-\|iron-sulfur-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|273908
CP030865.1\|AXO35591.1\|3714728_3716159_-\|iron-sulfur-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|131035
CP030865.1\|AXO35600.1\|3725996_3727565_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|236551
CP030865.1\|AXO35597.1\|3721239_3722199_-\|heme-O-synthase-protoheme-IX-farnesyltransferase	unknown	unknown	gnl\|CDD\|235293

Protein	Function_ID	Function_description	E-value
CP030865.1\|AXO35604.1\|3731050_3731395_-\|putative-electron-transport-protein	gnl\|CDD\|379162	pfam13397, RbpA, RNA polymerase-binding protein. RbpA is a family bacterial RNA polymerase-binding proteins. RbpA acts as a transcription factor by binding to the sigma subunit of RNA polymerase.	3.7195e-46
CP030865.1\|AXO35608.1\|3733869_3734874_-\|NAD-dependent-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	0
CP030865.1\|AXO35602.1\|3729126_3730143_+\|OpcA	gnl\|CDD\|378404	pfam10128, OpcA_G6PD_assem, Glucose-6-phosphate dehydrogenase subunit. Members of this family are found in various prokaryotic OpcA and glucose-6-phosphate dehydrogenase proteins. The exact function of the domain is, as yet, unknown.	2.53491e-78
CP030865.1\|AXO35605.1\|3731525_3731786_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	1.16511e-13
CP030865.1\|AXO35607.1\|3732673_3733873_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
CP030865.1\|AXO35599.1\|3724609_3725797_+\|transaldolase	gnl\|CDD\|235117	PRK03343, PRK03343, transaldolase; Validated.	0
CP030865.1\|AXO35601.1\|3727561_3729130_+\|glucose-6-phosphate-1-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
CP030865.1\|AXO35598.1\|3722463_3724602_+\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
CP030865.1\|AXO35609.1\|3735138_3736119_-\|hypothetical-protein	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.08536e-125
CP030865.1\|AXO35592.1\|3716155_3716932_-\|iron-sulfur-cluster-regulator-SufR	gnl\|CDD\|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	5.5631e-46
CP030865.1\|AXO35593.1\|3717047_3717992_+\|cytochrome-oxidase-assembly-protein	gnl\|CDD\|224528	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones].	1.84408e-32
CP030865.1\|AXO35595.1\|3719763_3720678_-\|hypothetical-protein	gnl\|CDD\|223267	COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis].	0.00365948
CP030865.1\|AXO35606.1\|3731881_3732673_-\|triosephosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	1.62059e-146
CP030865.1\|AXO35594.1\|3718065_3719733_+\|hypothetical-protein	gnl\|CDD\|379079	pfam13229, Beta_helix, Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.	1.01651e-10
CP030865.1\|AXO35603.1\|3730182_3730983_+\|6-phosphogluconolactonase	gnl\|CDD\|376480	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase.	6.97039e-79
CP030865.1\|AXO35590.1\|3713529_3714672_-\|iron-sulfur-cluster-assembly-protein-SufD	gnl\|CDD\|273908	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	3.22383e-87
CP030865.1\|AXO35591.1\|3714728_3716159_-\|iron-sulfur-cluster-assembly-protein-SufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
CP030865.1\|AXO35600.1\|3725996_3727565_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|236551	PRK09533, PRK09533, bifunctional transaldolase/phosoglucose isomerase; Validated.	9.67616e-52
CP030865.1\|AXO35597.1\|3721239_3722199_-\|heme-O-synthase-protoheme-IX-farnesyltransferase	gnl\|CDD\|235293	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional.	9.84029e-134

>CP030865.1|AXO35599.1|3724609_3725797_+|transaldolase
MDGMTDRLSELQGAGVAIWLDDLSRVRLSSGGLDKLRRESHVAGVTTNPTIFAKALSDADEYDWQLRDLAVRGVDVEEAVRMLTTYDVRWACDVMRPSYETSAGVDGRVSIEVDPRSAHDAAKTVAEAKALWWLVDRPNLFIKIPATEEGLPAITATLAEGISVNVTLIFGLDRYSQVMEAFLAGLEQAQANGHDLSKIGSVASFFVSRVDSEVDKRLEKIGSDQAKALRGKAAVANARLAYERYGEVFSSARWQKLADAGAHPQRPLWASTSTKNPDYRDVIYVEELIAPGTVNTMPEPVIHAYAEHGETKPDTVTVAYDDARKVFADLQSVGVDLSDVIATLEREGVEKFEASWVELLEGVKKSLAEAAKGSGSPHRAAEGNAQAAQQAGGNA
>CP030865.1|AXO35598.1|3722463_3724602_+|transketolase
MAANRPELPALNWSDLDRRAVDTVRVLAMDAVEKSGNGHPGTAMSLAPAAYLLFNRVMRHNPADPNWPGRDRFVLSAGHSSLTLYIQLFLSGYPLALDDLKALRQWGSLTPGHPEHGHTPGVETTTGPLGQRLGNAVGMAMAARRERGLFDPEPDRADSPFRHDIWCIASDGDIEEGITHEASALAGHQQLGNLCVIYDDNEISIEDDTRIAKSEDVAARYEAYGWHVQTVDWRSGDADQGDYHEDVEALYQALLAAKAETGRPSFIALRTIIGWPAPNKKNTGKIHGSALGADEVKATKEILGFDPQRTFEIDEEVLKHARQVLERGAQEQAEWTTGFDAWAQANPERKALWDRMATRTLPTGWTDALPTFGADAKGVATRAASGKILEALAPVLPELWGGSADLAESNNTTMKGERSFVPAAHATKDFPGDEYGRTLHFGIREHAMGSILNGIALHGGTRPYGGTFLVFSDYMRPAVRLAALMKLPVTYVWTHDSIGLGEDGPTHQPIEHLTALRAIPGLDVVRPADANETVWAWRQALEHTDRPTALALSRQALPTLDRTDLAGAEGVAKGGYVLAEASGGKPQVILIGTGSEVQLCLTARERLEADGTPTRVVSMPCQEWFFAQDEAYRESVLPRGVKARVSVEAGIAMSWRAIVGDSGECVSIEHYGASAPHTVLFEQFGFTPDRIVAAAHAALTRVGDITGFTTGN
>CP030865.1|AXO35597.1|3721239_3722199_-|heme-O-synthase-protoheme-IX-farnesyltransferase
MSMITERPVSNPAGQSPVGTVAEAPASGRRDVRAVVAAYVALTKPRIVELLLVTTVPAMMLADGGMPSLWLVAVVLVGGSLAAGAASVLNCYIDRDIDQLMRRTKRRPLPAHTVSPRSALIFGLVLAAVSVALMAATTNWLATVLTLAAIAYYDLVYTLWLKRTTAANTFWGGICGAAPVLIGWAAVTGSLAPAAWGLFAVVFFWQMPHFYALAIKYKDDYARAGVPMLPVVASVRRVNAEIIGFSWLTVLSSLAVWPLGMSPIYGVTALVVGGIFLVEAHKLCRRATRGEAVKPMRLFHWSTTYLTILFAAVALDALL
>CP030865.1|AXO35596.1|3720687_3721020_-|hypothetical-protein
MADGSDTTLTADKTAEQAPNGLVAGIKSFAAGHGGAKAVIEYVGKRGARIVLVGSDGVWADQFADGTDVARQACATAGVDVENAWERELMDQMRPSNDLWRSMARRTMAR
>CP030865.1|AXO35595.1|3719763_3720678_-|hypothetical-protein
MTNHHQSTRGKPRVAFVTCAELPDLDPDDRLALGPLAARGVTAEIAVWDDPAVDWAGYDLVVLRSPWDYARRRDEFVAWARTVPALANPADVVAWNTDKRYLSELSAAGVPTVETVWVEPGQAWTPPAGGEHVIKPAVSAGSQDTGRYDLTDPEHRELAVAHVRRLSDAGRLTMVQPYLEAVDTAGETALLFLADPGGVVFSHAIRKGPMLTGPDRGEAALYKEERIDPRTATAEERAVAEKVLAAVPGGPERLLYARVDLIPGPDGAPVLVELELTEPSLFVGYADGAPDRLAGAVLAHVRHH
>CP030865.1|AXO35594.1|3718065_3719733_+|hypothetical-protein
MPRKSLATTTPQRLTPVAGAPLWCDAHEHGLTGDGVTNDQPALAALVDRLGAGYDADGRARVIYCPPGLYSIRDAGTVWRSGVSLLGAGPAATRFLLSNEGNRSEPVPLAYWTTVQHGADRDRHIADCTFADFEIDGSGVAQTAYDYLAKGLGLQYVVRGVFRNLYIHHTGATGLGCDFLQDGLIDGVVAVGCGRLDNGDQMGGAGIGIGIGGWGDVERLTIANCTTIGNGTNGIFLELQKDYWTPPRGIRIIGCHSQANRFGISDWGADGLIVSACTMTNNLEAGFDVSGNGTAGVAGRGGLLTGCVIDSNVGDGISMGNTPGPYTVQGNRISRNGGFGYHEHDLGHGYRGAAADVVIQDNDIRENALDGIRIDRPMLDTSIVGNRIRDNGFRSAPAHSGSGEAVRYGPREVTDGNADWPDGGHRGKVVRVGSRDAVVSDNSATRLSLAEVRPDGSTGWNEATPEPGAEYELPDGPPACGGITIAAPFDSATVRANRIWHRDADTQAYGIWVTEAGSCVSCAFEDNDLAGTAAALRLDTPPIGGRWARNHSDRD
>CP030865.1|AXO35593.1|3717047_3717992_+|cytochrome-oxidase-assembly-protein
MKRSVRFPVSSTLLRRLALASIIANVAIVVTGGAVRLTASGLGCPTWPRCTDDSYTTTAEMGVHGVIEFGNRLLTFAVGIIALAVVLAVLAHRPRRRGTLPLAVGVLLGIPAQAVLGGITVLTNLNPWVVGLHFLASMAVIAAAYALWRRLGEPDGPVTPTVPAPLRTLAWITTAVSASVLVVGTWVTGSGPHAGDHGAARNGLDPTQISQVHADGVFLLIGLSVALYFAFRAVGAARAARAAAVLIAVELGQGVIGFVQYFTHLPAVLVGAHMLGSCLVLLATLGVLFATRERLPAVPPAPAEPVAEPVGAGA
>CP030865.1|AXO35592.1|3716155_3716932_-|iron-sulfur-cluster-regulator-SufR
MKNAAALSRASVTSAVTDGSRSRRGVRPVERESAPADLSTRDRVTQLLLERGATTAAQLGSALGLSPAAIRRHLDAMLADGDVVARDQVVRGSRGRGRPAKVFALTEAARGRCGTHHYDNMATAALRWIARTGGAAAVAAFAAEQVSALETRCRAAMEDAGDAPLARAEALAGALTAEGYAANASTIASGGQLCQHHCPVAHVAAEFPQLCEAETEVISRLVGTHVQRLATIAHGDGVCTTHIPAQSGSTVTTVRTDK
>CP030865.1|AXO35591.1|3714728_3716159_-|iron-sulfur-cluster-assembly-protein-SufB
MTEQIVQPLTQEEQLAALGRYEYGWADPDVAGASAQRGLSEAVVRDISAKKNEPAWMLDLRLKGLRLFGRKPMPNWGADLTGIDFDNIKYFVRSTEKQATSWEELPEDIKNTYDKLGIPEAEKQRLVAGVAAQYESEVVYHQIREDLEEQGVVFLDTDTALKEHEDLFKEYFGTVIPVGDNKFAALNTSVWSGGSFIYVPKGVHVDIPLQAYFRINTENMGQFERTLIIVDEGAYVHYVEGCTAPIYSSDSLHSAVVEIIVKKNARCRYTTIQNWSNNVYNLVTKRAVCHEGATMEWVDGNIGSKVTMKYPAVYMTGEHAKGEVLSVAMAGEGQHQDAGAKMVHAAPHTSSTIVSKSIARGGGRTSYRGLVQVLEGSTSSKSTVKCDALLVDTISRSDTYPYVDIREDDVSMGHEATVSKVSEDQLFYLMSRGLSEDEAMAMIVRGFIEPIAKELPMEYALELNRLIELQMEGAVG
>CP030865.1|AXO35590.1|3713529_3714672_-|iron-sulfur-cluster-assembly-protein-SufD
MTTQASAPPTTKSQALRSYDVADFPALTGLEEEWRFTPLKRLRGLATSAQGATGTVRHEYGDLPEGVTVDRIGRDDPRVGSVLTPFDRVSALAYGGADGALLVRVARDAVVEQPVRLRVVGENAEALAFGHTFVEVDRFAEATVVIEHVGSATLADNVEVSVGDGAKLTLVTVADWADDAVQAQHLKVRLGRDARIVHVQVSLGGDLVRQYTSVEYTQRGGEAELYGVYFADSGQHLEHRQLVDHTVPDCRSNVGYRGALQGDDAHTVWVGDVLIRAEATGTDTYEINRNLLLTDGARADSVPNLEIETGEIAGAGHASATGRFDDEQLFYLMARGIPEAEARRLVVRGFFAELINKIPVEELRERLGDAIEARLAKAGA
>CP030865.1|AXO35600.1|3725996_3727565_+|glucose-6-phosphate-isomerase
MSDLLAGRADMAAGLAVRGADALGASARATLVSHDVPARLAAADPALWGPAAETAALTRLGWLHAHRRSRDLLPQLAELADELGDLDHVVLAGDRGDTLAAEVLAECLGRPVTVLDSADPGPARAALADRPARTLLVLAARHGLDRTTDAHLRAYRRAWADEGPDAARHVVVVTEPGTELAARADELGAVVLPAEPGVAGPWAALTAFGLVPAALAGAPVAELLDEAEALTGALDRDRDNPGLALGAALGAAPGAGRDTIALVPDGTGLDGLGRWAGALLADATGGRILPLVAESPDSPGATGPGVLTVGLGGALGAGVGPGVAADMAVNGPLGAHLLTWAYAAATAAVTLRTDPFAAPAAAVAGDEPDSGPPSSVEDAIEVYAPSGAPADLTGALRWLLDGLGEREHLAVTAYLDPRADAAVAGLRPLLARHTGRPVTFAWGPRRPEHTDTRGRHLQITGAVTDDLEVPGRPYTFAQLQAAQAAGDRLALAGRERPVLRLHLTKRAAGVAQLLDTAGRTRT
>CP030865.1|AXO35601.1|3727561_3729130_+|glucose-6-phosphate-1-dehydrogenase
MTINDLESADRDAGGGGPVNPLRDVQDRRLPRIPEPCALVIFGVTGDLARKKLLPAVYDLANRGLLPPGFVVLGFARRDWGDGDFESVAHDAAKKHARTPWREEVWARLAGNIKFVGGSFDDDAAFDQLAATLDELRDSHGIAGNAAFYFSIPPAAFPVVLKQLARTGMADNDKSGGWRRVVVEKPFGNDLPSAKALNDLVDDVFTRQDVFRIDHYLGKETVQNILALRFANNLFEPLWNSKYVDSVQITMAEDVGIGTRAAFYDSVGTARDVLQNHLLQLLALVAMEEPTSFDADEIRAEKLKVLKAITVPHDVSQDTVRGQYLPGWVGGERAKGYLEEEGVPEGSTTETYVAVKLGIQNRRWAGVPFYIRAGKRLPRRVTEVAIMFKKAPHLPFNAADMESLGPNQLVIRVQPDEGVVLKFGSKVPGTTMEVRDIAMDFQYGEAFTESSPEAYERLVLDVLIGDRTLFPDAAEVEQSWQVVDPLEHAWEGTTPEPYRAGEWGPRAADEMLAREGRAWRRA
>CP030865.1|AXO35602.1|3729126_3730143_+|OpcA
MIGLWDTTGNEVVKALAAERRSAGGVASGMALTLIVVVDEKRVREAEAAATIAAAAHPCRLLVVVRSDVERDRNRLDAEIVVGGRLGPCEAVVTRMYGRLALHAESVVMPLLVPDVPVVTWWHGEPPEEIATDFLGVVADRRITDSAQAADPIAALRQRAHDYAPGDTDLAWTRITPWRTLVAGAFDTTQARVTEASVVAPPSDPTAALMSGWLKARLGIEPAWERSDEFPRMRQVQLRCANGDELTLTRDDSIAVFRRTGQEDRTLPLVRRPLGDELAEELRRLDAAQVYAEALGAAAGITGLDQRPAQRVHVWKDPATAQRAEAGVTAHAGATANE
>CP030865.1|AXO35603.1|3730182_3730983_+|6-phosphogluconolactonase
MGGRNTRARRMTEASVAVHADPDLLAQAVAARLVVKLLDAQAERGQASVVLTGGRIAAAVYRAIGQLPARDAVDWSRVDVWWGDERFLPAGDPERNETQARAALLDTVPLDPARVHPMPASDGPAGDDPEAAAAGYARELATAARPGNAVLPHFDVLMLGVGEDGHVASVFPEHPVHHDNRPVSAVRGSPKPPPVRTTLTLPTINTAEEVWLIAAGADKARAVGMALAGAGPVQLPAAGVQGVSRTLWLLDRAAAANVPPRLRSLR
>CP030865.1|AXO35604.1|3731050_3731395_-|putative-electron-transport-protein
MPSNNVIRGTRVGSAPERFDQRVEPAPRRPVVYWCRHGHRVEFLIAAEAETPAAWECPRCGEPAGPDPGDPPGRQRAEPYKTHLAYVQERRTPEEGEALLAEALDALRRRRGRA
>CP030865.1|AXO35605.1|3731525_3731786_-|preprotein-translocase-subunit-SecG
MPIWFAYTMITLLVITSVLLVLLILLHRGKGGGLSSMFGGGVSSSLAGSSVAEKNLDRYTVLVGIVWFACIVGLGLWLRLQMATGT
>CP030865.1|AXO35606.1|3731881_3732673_-|triosephosphate-isomerase
MASTTRRPLMAGNWKMNLNHLEANLLVQKLAASLNEKQLTDVECVVLPPFTDLRTVQTAVDGDKLLIGYGAQDLSPHPSGAYTGDIAGPMLAKLGCGYVVVGHSERRQYHHEDDALVNAKVSAALANGLTPILCIGEGLEVREQSGQVRHCCDQLDGALKGLTAEQVTKVVVAYEPVWAIGTGKTATPEDAQEVCGAVRKRIVETYDANTAEQVRILYGGSVKASNVAAIMAQPDVDGALVGGASLDAEEFAKICRFPEHTAR
>CP030865.1|AXO35607.1|3732673_3733873_-|phosphoglycerate-kinase
MTIRNLDDLLAEGVSGRRVLVRADLNVPLDKQTGEITDDGRIRAVLPTLSALVQAGAKVVVCSHLGRPKGAPDPQFSLRPVAGRLGELLGAPVEFAEDTVGDSARSTVAGLADGQVALLENLRFNKGETSKDDAERGAFADQLAALGDAYVDDAFGAVHRKHASVHDVPARLPHVAGRLVLREVEVLSRLTGEPERPYVVVLGGSKVSDKLAVIEALLPTVDRLLIGGGMCFTFLKAQGHEVGTSLLEKDMVETCRNLMERAPGKIMLPVDVVAADAFAPDAAHDTVPADGIPSHRLGLDIGPETVAGFAAVLSQAKTIFWNGPMGVFEMAAFANGTRGVAEAITKADAFSVVGGGDSAAAVRALGLDESSFGHISTGGGASLEYLEGKTLPGIAALEN
>CP030865.1|AXO35608.1|3733869_3734874_-|NAD-dependent-glyceraldehyde-3-phosphate-dehydrogenase
MTIRVGINGFGRIGRNFFRAVLASGADIEVVAVNDLTDNATLAHLVKYDSILGRLPHEVKATADEITVGGKTIKAYAEKDPANLPWGEVGADVVIESTGFFTDGTKAKAHLDGGAKKVIISAPAKNEDVTVVMGVNQDQYDPAKHNIISNASCTTNCLAPMAKVLQDTFGIQQGLMTTIHAYTQDQNLQDAPHKDLRRARAAALNIVPTSTGAAKAIGLVLPELKGKLDGYALRVPIPTGSATDLTVTVGRETTVDEVNAALKAAAEGPLRGILTYNEDPIVSADIVTDPASCIFDAPLTKVIGNQVKVVGWYDNEWGYSNRLVDLVKLVGQSL
>CP030865.1|AXO35609.1|3735138_3736119_-|hypothetical-protein
MAMTAAVKDELSRVDVPKPCCRRAEMAALLRFAGGLHIVSGRVVVEAELDTGAVARRLRREVAEVYGYPSEIHVLASGGLRKGSHFIVRVVKDGEALARQTGLLDVRGRPVRGLPPHVVAANVCCAVSAWRGAFMAHGSLTEPGRSSALEITCPGPESALALVGAARRIGITAKNREVRGVDRVVVKDGDPIAALLTRIGAHSSVLAWEERRVRREVRATANRLANFDDANLRRSARAAVAAAARVTRALEILADDAPNHLTSAGRLRLEHRQASLEELGALAEPPLTKDAIAGRIRRLLALADKRARDLGIPDTEAAVTPDMLVV

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Crispr_ID: CP030865_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030865_7

4267236-4267331

Orphan

Consensus_repeat	Method
GACACAAACTCCTTGATCACCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030865_7

>merge|CP030865|7|4267236-4267331|CRISPRCasFinder
GACACAAACTCCTTGATCACCGCAGCCCACCCCGGCGATCAAGGAGCTTGTGTTCGTTATGGGCCCGCCTCAGGACACAAACTCCTTGATCAACCG

>CP030865|7|6|4267236-4267331|CRISPRCasFinder
GACACAAACTCCTTGATCACCGC	AGCCCACCCCGGCGATCAAGGAGCTTGTGTTCGTTATGGGCCCGCCTCAG
GACACAAACTCCTTGATCAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP030865.1\|AXO36103.1\|4258699_4259050_-\|glycine-betaine-transporter-OpuD	unknown	unknown	gnl\|CDD\|376718
CP030865.1\|AXO36111.1\|4268444_4269608_-\|tRNA-dihydrouridine-synthase-B	unknown	unknown	gnl\|CDD\|129820
CP030865.1\|AXO36102.1\|4257680_4258586_-\|ABC-type-transporter-ATPase-component	unknown	unknown	gnl\|CDD\|224054
CP030865.1\|AXO36110.1\|4267732_4268386_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379241
CP030865.1\|AXO36114.1\|4271712_4273092_-\|glycyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235240
CP030865.1\|AXO36118.1\|4274493_4275441_+\|zinc-ABC-transporter-periplasmic-binding-protein-ZnuA	unknown	unknown	gnl\|CDD\|376518
CP030865.1\|AXO36113.1\|4270985_4271678_+\|mobile-element-protein	unknown	unknown	gnl\|CDD\|376573
CP030865.1\|AXO36099.1\|4254607_4256503_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
CP030865.1\|AXO36117.1\|4274163_4274406_+\|hypothetical-protein	unknown	unknown	unknown
CP030865.1\|AXO36119.1\|4275449_4276202_+\|zinc-ABC-transporter-ATP-binding-protein-ZnuC	unknown	unknown	gnl\|CDD\|224046
CP030865.1\|AXO36112.1\|4269785_4270748_+\|hypothetical-protein	unknown	unknown	unknown
CP030865.1\|AXO36104.1\|4259365_4260202_-\|iron-utilization-protein	unknown	unknown	gnl\|CDD\|99790
CP030865.1\|AXO36107.1\|4261956_4264692_-\|pyruvate/phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
CP030865.1\|AXO36116.1\|4273773_4274115_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367760
CP030865.1\|AXO36105.1\|4260251_4261487_-\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|235098
CP030865.1\|AXO36101.1\|4256832_4257684_-\|ABC-type-multidrug-transport-system-permease-component	unknown	unknown	gnl\|CDD\|223912
CP030865.1\|AXO36115.1\|4273205_4273709_-\|hypothetical-protein	unknown	unknown	unknown
CP030865.1\|AXO36106.1\|4261473_4261839_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380093
CP030865.1\|AXO36100.1\|4256576_4256822_-\|transcriptional-regulator-PbsX-family	unknown	unknown	gnl\|CDD\|224393
CP030865.1\|AXO36108.1\|4265002_4266889_+\|beta-hexosaminidase-precursor	unknown	unknown	gnl\|CDD\|119336

Protein	Function_ID	Function_description	E-value
CP030865.1\|AXO36103.1\|4258699_4259050_-\|glycine-betaine-transporter-OpuD	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	7.50189e-12
CP030865.1\|AXO36111.1\|4268444_4269608_-\|tRNA-dihydrouridine-synthase-B	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	2.92788e-134
CP030865.1\|AXO36102.1\|4257680_4258586_-\|ABC-type-transporter-ATPase-component	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.08497e-83
CP030865.1\|AXO36110.1\|4267732_4268386_+\|hypothetical-protein	gnl\|CDD\|379241	pfam13529, Peptidase_C39_2, Peptidase_C39 like family.	2.00197e-22
CP030865.1\|AXO36114.1\|4271712_4273092_-\|glycyl-tRNA-synthetase	gnl\|CDD\|235240	PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional.	0
CP030865.1\|AXO36113.1\|4270985_4271678_+\|mobile-element-protein	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.39424e-17
CP030865.1\|AXO36099.1\|4254607_4256503_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
CP030865.1\|AXO36119.1\|4275449_4276202_+\|zinc-ABC-transporter-ATP-binding-protein-ZnuC	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	9.02197e-85
CP030865.1\|AXO36104.1\|4259365_4260202_-\|iron-utilization-protein	gnl\|CDD\|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	1.73092e-90
CP030865.1\|AXO36107.1\|4261956_4264692_-\|pyruvate/phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
CP030865.1\|AXO36116.1\|4273773_4274115_-\|hypothetical-protein	gnl\|CDD\|367760	pfam03992, ABM, Antibiotic biosynthesis monooxygenase. This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species. It's occurrence as a repeat in Streptomyces coelicolor SCO1909 is suggestive that the other proteins function as multimers. There is also a conserved histidine which is likely to be an active site residue.	1.79465e-06
CP030865.1\|AXO36105.1\|4260251_4261487_-\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|235098	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0
CP030865.1\|AXO36101.1\|4256832_4257684_-\|ABC-type-multidrug-transport-system-permease-component	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	3.18871e-14
CP030865.1\|AXO36118.1\|4274493_4275441_+\|zinc-ABC-transporter-periplasmic-binding-protein-ZnuA	gnl\|CDD\|376518	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic. ZnuA includes periplasmic solute binding proteins such as TroA that interacts with an ATP-binding cassette transport system in Treponema pallidum. ZnuA is part of the bacterial zinc-uptake complex ZnuABC, whose components are the following families, ZinT, pfam09223, pfam00950, pfam00005, all of which are regulated by the transcription-regulator family FUR, pfam01475. ZinT acts as a Zn2+-buffering protein that delivers Zn2+ to ZnuA (TroA), a high-affinity zinc-uptake protein. In Gram-negative bacteria the ZnuABC transporter system ensures an adequate import of zinc in Zn2+-poor environments, such as those encountered by pathogens within the infected host.	1.57506e-98
CP030865.1\|AXO36106.1\|4261473_4261839_-\|hypothetical-protein	gnl\|CDD\|380093	pfam18029, Glyoxalase_6, Glyoxalase-like domain. This entry comprises a diverse set of domains related to the Glyoxalase domain. The exact specificity of these proteins is uncertain.	3.26718e-30
CP030865.1\|AXO36100.1\|4256576_4256822_-\|transcriptional-regulator-PbsX-family	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	1.17162e-17
CP030865.1\|AXO36108.1\|4265002_4266889_+\|beta-hexosaminidase-precursor	gnl\|CDD\|119336	cd06568, GH20_SpHex_like, A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.	1.14533e-168

>CP030865.1|AXO36108.1|4265002_4266889_+|beta-hexosaminidase-precursor
MPTTPTAPETGPEPTDTRPTSTSTHDQAPPSADAAPSAGAAAADVAAPAGAVRSADAAAGEGVPGAAGEVLPGVPTAAAELARVAAGRAAEALAGPAPVRLDDVVPAPEQVFPDPAGDFTLSADAALRVSPAGRDVAEQLADWLRPATGFPLPVADAPAGQDGPLTLTLSPSAPDAAPGTRATDDGSGGSVGDGLGDEGYRLDVAATGVRITAATSAGLFHGAQTLRQLLPAAIENRTPVAARWAVPGGTIVDRPRFPYRGAMLDVARHFFAVEDVLRMVDHLARYKLNHLHLHLTDDQGWRIAVDSWPRLTEVGGATAVGGGPGGWYSGDDYRRIVTYAARRHVTVVPEIDLPGHTNAALVAYPELAPGKVAPPPYTGTEVGFSYVDPEDERTYAFVADVVGEVAALTPGPWLHLGGDEAFKVPAESYRAFVERAQRLVQATGKTVVGWHQLAPAGHVDGRVLQWWGTNGDDPETADAVRRGARLILSPANHAYLDMKYAPDTPIGHDWAGLIDVRRAYEWDPGTHVRGVPAEAVLGVEAPLWTESVSTRAEVEYMLFPRLPAVAELGWSPRATHDWSRFRVRLAGHGPRWTTAGITFHTAPDIPWPSTPSSIPTPRPHPEDSPSRS
>CP030865.1|AXO36107.1|4261956_4264692_-|pyruvate/phosphate-dikinase
MEAQESGEHKYVYDFAEGNKDLKDLLGGKGANLAEMTNLGLPVPPGFTITTEACKAYLTTGREPDGLAAQIEAHLESLEREMGRRLGDPDDPLLVSVRSGAKFSMPGMMETVLNVGLNDRSVEGLARQAGGSADRAASGGADRFAWDSYRRLIQMFGKTVCEVPGEEFEHALDEIKSAKGTHNDLDLDADDLRGLVDAYKKIFAKHTGREFPQEPREQLDLAIRAVFDSWNAERAVLYRRQERIPADLGTAVNVVAMVFGNLGPDSGTGVAFTRDPGSGAQGIYGDYLANAQGEDVVAGIRNTVPLQELEQLDKTSYDQLLGIMARLEEHYKDLCDIEFTIERGKLWMLQTRVGKRTAAAAFVIAGQLVDEGLIDLDEALHRVNGAQLAQLMFPRFQLDHEFEPVAKGIGASPGAASGKVVFTSARAVELAAEGEAVILVRRETNPDDLNGMIAAKGILTSRGGKTSHAAVVARGMGKTCVSGADELEVNVPAKKFTVGGHVVNEGDVVSIDGTTGKVYLGEVPVMPSEVVQYFEGELDPETIDDALVRAVHRIMTHADAARRLRVRTNADTGADAARARRFGAEGIGLCRTEHMFLGDRRELVERLILASGEREREDALAALLPLQRADFIEIFREMDGLPVTVRLIDPPLHEFLPPLEQLAVNVAVAQERGEDVAKEEALLAAVRRMHEENPMLGLRGVRLGLVIPGLFAMQVRAIAEAAVAVVRDGGTACPEIMVPLVGAVQELETVRAEAERIIAEVVGDSGVEVLIGTMIEVPRAALTAGQIAEAAEFFSFGTNDLTQMGWGFSRDDVEGAFFWRYLELGIFGISPFESIDTDGVGRLIRIAAEEGRAARPGLKLGVCGEHGGDPDSVHFFHSVGLDYVSCSPFRVPVARLEAGRAAITTAGSDSR
>CP030865.1|AXO36106.1|4261473_4261839_-|hypothetical-protein
MTAVWENLVVDARDPSRLASWWAEALGYQVITDKPDEVEIRRTPDTLPGLVFVPVAGAKEGKNRLHIDLRPADMEAEVERLVDMGARHVDIGQGDVEWTVLADPEGNEFCVLRQRGNGDRG
>CP030865.1|AXO36105.1|4260251_4261487_-|deoxyguanosinetriphosphate-triphosphohydrolase
MTGADDAARLVDEAPKDTGYGRSPFERDRARVLHSAAFRRLAAKTQVHTAGTNDFLRTRLTHSLEVAQIAREMGARLGCDPDVVDTAGLAHDLGHPPFGHNGEYALDELAAACGGFEGNAQTLRVLTRLEAKVLAPDGRSVGLNLTRAALDAVSKYPWPRRPGERKFGVYADDRPVFDWLREGAPPGSRRCLEAQVMDWADDVAYSVHDVEDGIHGGYVDLRPLLADADERRALCADVAATYSGEAPEDLGEVLAELLADPVLAPLAAYDGSHRALAALKATTSVLTGRFVSSVVAATQQRHGPGPHRRYAADLVVPRRIRAQCALLKGIALRYVMRRPGAEGRYARQRDVLAGLVTALLDRAPDVLDPVFAPLWRDAADDAARLRVVIDQVASLTDPAALAWHARLVSPG
>CP030865.1|AXO36104.1|4259365_4260202_-|iron-utilization-protein
MTDRPKKLTAATVVRTTRPTPHLIRLVLGGAELAGLPVGAYTDHYVKFVFPPAGVTYPYPVDLATIKREFPAEQWPRLRAYTVRAWDAAAGEMTVDVVHHGDEGLAGPWAAALRPGDRVLFTGPGGAYAPDPAADWHLLAGDESALPAIAAALERLPAGARAKVYVEVSGPADELPLAGAGAVEVRWLHRDGRPYGEPLVEAVRALEFPPGRVHAFVHGEAGAVKELRRLLRVERGVPRGDLSISGYWRQGLDDEGWRSTKPAWNAAVEAEEAAAVPA
>CP030865.1|AXO36103.1|4258699_4259050_-|glycine-betaine-transporter-OpuD
MLAVAEPIQHYATPPPASGVAPQTGAAAATAMQYTLFHWTLLAAALLLAGGLVALPFVVVMLGLAVAVLREMAADPMLRAGPRPRRSGLAAAVRAARSYEEEDPAPVTRWFHSRRR
>CP030865.1|AXO36102.1|4257680_4258586_-|ABC-type-transporter-ATPase-component
MRDLRMRYGAVDVLHGVDLTARRGEVLALLGPNGAGKTTTIEILEGFRLPSAGTVRVLGVDPARGDERWRARLGVVLQSWRDHGKWRVRDLLAHLGDFYAPYATDRIPRPWPVDDLLETVGLSAHAGSRVARLSGGQRRRLDVAVGIVGRPELLFLDEPTVGFDPAARREFHELVHRLADLDETTIMLTTHDLAEAEKLADRILILAGGRIIAEGSPDQLARRVAGDAEVRWTRDGERYVHATADATAFLRDLLREHGDRIRELEVRRASLEDAYLTLVHEEETGIRTGRTERVWQQEANR
>CP030865.1|AXO36101.1|4256832_4257684_-|ABC-type-multidrug-transport-system-permease-component
MNPTTNALRAGLRRGVIELRATFTNGQDLWTYFFPTVVLLVAVFWMRGSTVPGTDFSLGARTLPSALGMGLLFGGLLGLANQLVIDREDGTLLRAKAIPDGMLGYLVGKIVLVSAVALIGVVIQLTPGLFFLDGLRLGDPGAWLTLAWVVPLGLVATLPLGAVIGSLIENPRNMGLVVMPIFGLIALSGIFYPINGLPGWLQGVAQVFPLYWLGLGMRSALLPGDLAAVELGGSWRHLETVGVLGAWAVLGLVLAPVVLRRMARRESGSRVAARRERAMQRVG
>CP030865.1|AXO36100.1|4256576_4256822_-|transcriptional-regulator-PbsX-family
MSETVHNRIAVLRAERGISRRQLADALGVHYQTVGYLERGEFRPSLHLALRIAAYFEVPVEVVFSIEPFPRIGDPAAARSA
>CP030865.1|AXO36099.1|4254607_4256503_-|DNA-primase
MYAEGVAVMAGRIRDEDIALVRERTAIADVISEVVTLKSAGGGNLKGLCPFHDEKSPSFNVSPARNVFYCFGCGVGGDAIKFLMDAEHLSFVESVERLADRAGIQLRYVEEDRSTPRARPQQGQRQRLVAAHAAAVDFYRAQLTTAGARPAREFLAGRGFDRAAAERYGCGFAPDGWDLLTKHLRQQGFTHDELVTGGLSRPARSGSLIDRFRRRLMWPIRDITGDVIGFGARKLFDDDDGPKYLNTPETPIYKKSHVLYGIDQAKREIAKQGKVVVVEGYTDVMACHLADVPTAVATCGTAFGGDHISVLRRVLFDSDERAGEIIFTFDGDAAGQKAALRAFEDDQRFVGRTFIAVSPDNMDPCELRLAKGDLAVRDLVARREPLVDFALRHVISRFDLDTVDGRVEAMRRAAPLVAKIKDREKRPEYVRKLAGDLGMEIEPVQRAVLGAANGQPAPGTPAASARPGRNAPSVDSPRSMVEREALKLALQEPVLAGPMFDAVEVTDYQHPVHVSVRTAVAAAGGASAATGGAVWIERVRDACDDLAGQALIGELAVEPLRIDGEPDPRYVSITMARLQWSSVTGRIRDLKSKIQRVNPVSNKDEYFALFGELLSLEQHARALREQAAGGL
>CP030865.1|AXO36110.1|4267732_4268386_+|hypothetical-protein
MATTLLRKTVLTAAGVVATAGGIAGPAIAAQATPAERAAAQVTTDRKHGERELDVRYEAQPNFYFCGPAAARNALSVQGKNIDVHAMAKEMGTTEAGTNSINDITPILNKETGKDVYKSTEIPVDKARDRDKVDKLRADVVKTVDDGRAVVANIAGTATDTDGNAHSFEGGHYISVVGYRDGGKIVTIADSANPTQASYRMDVDELARWIASRGYSS
>CP030865.1|AXO36111.1|4268444_4269608_-|tRNA-dihydrouridine-synthase-B
MTAPTLPALTIGPHQVWPPVVLAPMAGITNVGFRRLCREQGGGIYVCEMITTRALVERNPKTLRMIAFGAEEQPRSLQLYGTDPEITAAAVRIVVERDLADHIDLNFGCPVPKVTRRGGGSALPWRRRLFARLVKAAVDAASPAGVPVTVKMRKGIDDDHLTYVEAGLAAQDAGVAAVALHGRTAAQRYSGTADWDAIATLKAALDVPVLGNGDIWEADDALRMVAHTGVDGVVIGRGCLGRPWLFADLEAAFNGSPQRRLPSLGEVAVTMRRHAELLVEQFVAGARNPARGERDGCTDFRKHVAWYLKGFPIGSELRRSLAMIESLAQLDDLLGKLDPAVPFPVENLGQPRGRTNSPGKVFLPDGWLASRDDDTPPDGAELDDSGG
>CP030865.1|AXO36112.1|4269785_4270748_+|hypothetical-protein
MPEQPPELSDLAERQQQIVTRTQLLGVGFDDMYLYRQTRRGLWQRVLPATYALVSGTLTDEQRRISAALYAGADAQLTGLAALIWYGFRHSPRTADVHLILPHHVRRRSAGHAVIARALELDPRARRTALYPVCSPARAVVDAARDLRHLRPVRATVAEAVQRGFTDLDSLDAEIRRARRSRTALIRKAFAEITDGVRSAPETELRECLGSSRVLSEILWNPRLSAADGARLPTPDGYLAECAVALEVDSREYHLSPADWARTLDRHNELSRHGVLVLHFTPAQIRREPGRVRRTVEDAYAARRGVGTRTGVRAEPISPG
>CP030865.1|AXO36113.1|4270985_4271678_+|mobile-element-protein
MRDLVRALHRDPVGVPAPGTRVRLRDDLLAQVAGLEPGGGVATAARGAAGPAARRGPVGHVEGGDRRLPHPGAQGRPKTGPSPVDRRKPGSKHHVITDAGGIPLAVTLTGGNRHDSTQTTALLDAIPPIGGRPGPPRRRPDRLYADRGYDYDSHRQQIRARGVTPVIARRGTPHGSGLGTRRWVVERTIAWLHWFRRLRIRWEIRDDIHQAFLSLACALICWRQLQRTQS
>CP030865.1|AXO36114.1|4271712_4273092_-|glycyl-tRNA-synthetase
MPADRIDAVTSLAKRRGFVFPSSEIYGGTRSAWDYGPLGVELKENVRRQWWRTMVQQRDDVVGLDSAVILARKVWEASGHIAEFVDPLTECQSCHKRFRADHLEEAYEAKHGKPLTSLTELNCPNCGNKGTFTEPKMFNGLMKTYLGPVESDEGMHYLRPETAQGIFVNYKNVETVARKKPPFGIAQTGKSFRNEITPGNFIFRTREFEQMEMEFFVEPGTDEQWHEYWLSERWNWYLDLGLSEENLRFYEHPKEKLSHYSKRTVDIEYRFRFGGSEFAELEGIANRTDFDLSTHSKHSGVDLSYFDQGKGERWMPYVIEPAAGLTRAVLAFLLEAYDEDEAPNTKGGVDKRTVMRFDPRLAPVKVAVLPLSRNEALSPKAKQLATDLRKRWVVEFDDSQAIGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRNRDTMAQERVSLDQVERYLIERLPGC
>CP030865.1|AXO36115.1|4273205_4273709_-|hypothetical-protein
MPPAPPADPGTPAPPQGPGAAPPFAAPPTEGGRTRLWLGLGAGALAVLICCGGGGAAVVGLAVSNAQAIGEQGRAVTSDYYQALVAREWSKAYDTLCADLRRREPRREFERRVATEPQISGYRVGEVDITTLTVPVDVTLAGGRREAQTVTLAPDQQTGGVEVCGVS
>CP030865.1|AXO36116.1|4273773_4274115_-|hypothetical-protein
MLVTNRFVVEAETVDEFTREAHAALAALAARPGYLRGELLRALDDPDHWLLATEWESVGAYRRALGGFDVKVAAVPLLARSVDEPSAYETLAGAAPEGEIVVVASDRAAGPYR
>CP030865.1|AXO36117.1|4274163_4274406_+|hypothetical-protein
MLSRLARLNPTAVFLAVLALMLVGLFAPGPAGGVLLLALAGGLVWLMSVTWPVQAPATRILRLVMLTLLITVALAKLMVG
>CP030865.1|AXO36118.1|4274493_4275441_+|zinc-ABC-transporter-periplasmic-binding-protein-ZnuA
MTVRAPRRILTAAATALLAAAGLTACADGTGAASEPGKVGVVAAFYPLQFLSERIGGDTVTVSNLTKPGAEPHDLELNPRQVGQVVDADVVVYLSGFQPAVDEAVEQNGGDRAFDVAGVTPLRDAAAGGHDHDHEGEAGHSGEGGGKDPHVWLDPTRLATIGDKLAERLGRADPEHAADYTARAGALRAELTKLDTEFTDGLRTCARREIVTSHAAFGYLTERYQLEQIGISGLTPESEPSPQRLAEVAEEAREHQAGTIFFETLVSPKVAETIAREVGAKTAVLDPLEGPPADGDYLSAMRANLQTLRTALDCS
>CP030865.1|AXO36119.1|4275449_4276202_+|zinc-ABC-transporter-ATP-binding-protein-ZnuC
MIEIAHATVGYDGRPVLRDVSLTVTAGEVVAVLGANGSGKSTLVRAALGLVPVGAGSVALFGTPQRRFRQWHRIGYVPQRLGAGSGVPATVREVVASGRLARRGVLRPAGRADREAVAAALDAVGLADRAGDPVSTLSGGQQQRTLIARALAGGPELLVLDEPTAGVDAASQEAFAGALRSFRDGGGTVLLVAHELGPLRPLISRAVVVHQGGIAHDGAVPEPAGHHADPDHEHVHPHCDEEPARLWTGI

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Crispr_ID: CP030865_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030865_9

5884378-5884530

Orphan

Consensus_repeat	Method
CGGGCCGGCCCGACCACCACACCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP030865_9

>merge|CP030865|9|5884378-5884530|CRISPRCasFinder
CTGGCGGACCGGGCCACCACCACGGCGAAGTGGCGGCAACGGAGCGCCCGGCATCCAGCCACCTCCCCGAACTGGCGGGCCGGCCCGACCACCACACCGTCCCGGGCGGGCCCTACCACCACACTGTCCCGGGCCGGCCCGACCACCGCACCG

>CP030865|9|8|5884378-5884530|CRISPRCasFinder
CTGGCGGACCGGGCCACCACCACG	GCGAAGTGGCGGCAACGGAGCGCCCGGCATCCAGCCACCTCCCCGAACTGG
CGGGCCGGCCCGACCACCACACCG	TCCCGGGCGGGCCCTACCACCACACTGTCC
CGGGCCGGCCCGACCACCGCACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP030865.1\|AXO37537.1\|5877626_5877839_-\|hypothetical-protein	unknown	unknown	unknown
CP030865.1\|AXO37554.1\|5894224_5895214_+\|DNA-topoisomerase-IB	unknown	unknown	gnl\|CDD\|226099
CP030865.1\|AXO37545.1\|5885029_5885800_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|133062
CP030865.1\|AXO37546.1\|5885888_5886338_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176864
CP030865.1\|AXO37542.1\|5880553_5880958_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377614
CP030865.1\|AXO37536.1\|5877178_5877625_+\|hypothetical-protein	unknown	unknown	unknown
CP030865.1\|AXO37552.1\|5892583_5893285_+\|short-chain-dehydrogenase/reductase-SDR	unknown	unknown	gnl\|CDD\|212491
CP030865.1\|AXO37548.1\|5888178_5889153_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|340831
CP030865.1\|AXO37543.1\|5881018_5882422_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|365919
CP030865.1\|AXO37535.1\|5876653_5877097_-\|hypothetical-protein	unknown	unknown	unknown
CP030865.1\|AXO37547.1\|5886604_5888182_+\|HAD-superfamily-hydrolase-subfamily-IIIA	unknown	unknown	gnl\|CDD\|319806
CP030865.1\|AXO37549.1\|5889137_5890355_+\|glycosyl-transferase-group-1	unknown	unknown	gnl\|CDD\|340830
CP030865.1\|AXO37544.1\|5882524_5884117_+\|phytoene-dehydrogenase	unknown	unknown	gnl\|CDD\|224154
CP030865.1\|AXO37540.1\|5878886_5879258_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378655
CP030865.1\|AXO37551.1\|5891043_5892540_+\|ADP-heptose-synthase/D-glycero-beta-D-manno-heptose-7-phosphate-kinase	unknown	unknown	gnl\|CDD\|225425
CP030865.1\|AXO37550.1\|5890354_5891047_+\|phosphoheptose-isomerase-1	unknown	unknown	gnl\|CDD\|240139
CP030865.1\|AXO37538.1\|5878003_5878267_-\|hypothetical-protein	unknown	unknown	unknown
CP030865.1\|AXO37541.1\|5879360_5880413_-\|ribonuclease-BN	unknown	unknown	gnl\|CDD\|377085
CP030865.1\|AXO37553.1\|5893281_5894241_+\|ADP-heptose--lipooligosaccharide-heptosyltransferase-II	unknown	unknown	gnl\|CDD\|340821
CP030865.1\|AXO37539.1\|5878368_5878830_-\|uncharacterized-protein	unknown	unknown	gnl\|CDD\|176859

Protein	Function_ID	Function_description	E-value
CP030865.1\|AXO37554.1\|5894224_5895214_+\|DNA-topoisomerase-IB	gnl\|CDD\|226099	COG3569, COG3569, Topoisomerase IB [DNA replication, recombination, and repair].	5.1916e-64
CP030865.1\|AXO37545.1\|5885029_5885800_-\|glycosyl-transferase	gnl\|CDD\|133062	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily.	2.61094e-93
CP030865.1\|AXO37546.1\|5885888_5886338_-\|hypothetical-protein	gnl\|CDD\|176864	cd07822, SRPBCC_4, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	1.15857e-11
CP030865.1\|AXO37542.1\|5880553_5880958_+\|hypothetical-protein	gnl\|CDD\|377614	pfam06150, ChaB, ChaB. This family of proteins contain a conserved 60 residue region. This protein is known as ChaB in E. coli and is found next to ChaA which is a cation transporter protein. ChaB may be regulate ChaA function in some way.	1.68448e-19
CP030865.1\|AXO37552.1\|5892583_5893285_+\|short-chain-dehydrogenase/reductase-SDR	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.02817e-35
CP030865.1\|AXO37548.1\|5888178_5889153_+\|glycosyl-transferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.67528e-14
CP030865.1\|AXO37543.1\|5881018_5882422_-\|aldehyde-dehydrogenase	gnl\|CDD\|365919	pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of dehydrogenases act on aldehyde substrates. Members use NADP as a cofactor. The family includes the following members: The prototypical members are the aldehyde dehydrogenases EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This family also includes omega crystallin, an eye lens protein from squid and octopus that has little aldehyde dehydrogenase activity.	1.18497e-146
CP030865.1\|AXO37547.1\|5886604_5888182_+\|HAD-superfamily-hydrolase-subfamily-IIIA	gnl\|CDD\|319806	cd07503, HAD_HisB-N, histidinol phosphate phosphatase and related phosphatases. This family includes the N-terminal domain of the Escherichia coli bifunctional enzyme histidinol-phosphate phosphatase/imidazole-glycerol-phosphate dehydratase, HisB. The N-terminal histidinol-phosphate phosphatase domain catalyzes the dephosphorylation of histidinol phosphate, the eight step of L-histidine biosynthesis. This family also includes Escherichia coli GmhB phosphatase which is highly specific for D-glycero-D-manno-heptose-1,7-bisphosphate, it removes the C(7)phosphate and not the C(1)phosphate, and this is the third essential step of lipopolysaccharide heptose biosynthesis. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.98157e-50
CP030865.1\|AXO37549.1\|5889137_5890355_+\|glycosyl-transferase-group-1	gnl\|CDD\|340830	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.	1.69488e-141
CP030865.1\|AXO37544.1\|5882524_5884117_+\|phytoene-dehydrogenase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	7.62805e-79
CP030865.1\|AXO37540.1\|5878886_5879258_-\|hypothetical-protein	gnl\|CDD\|378655	pfam11387, DUF2795, Protein of unknown function (DUF2795). This family of proteins has no known function.	4.43869e-06
CP030865.1\|AXO37551.1\|5891043_5892540_+\|ADP-heptose-synthase/D-glycero-beta-D-manno-heptose-7-phosphate-kinase	gnl\|CDD\|225425	COG2870, RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane].	6.81656e-86
CP030865.1\|AXO37550.1\|5890354_5891047_+\|phosphoheptose-isomerase-1	gnl\|CDD\|240139	cd05006, SIS_GmhA, Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).	1.82745e-65
CP030865.1\|AXO37541.1\|5879360_5880413_-\|ribonuclease-BN	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	5.25068e-61
CP030865.1\|AXO37553.1\|5893281_5894241_+\|ADP-heptose--lipooligosaccharide-heptosyltransferase-II	gnl\|CDD\|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	3.93769e-44
CP030865.1\|AXO37539.1\|5878368_5878830_-\|uncharacterized-protein	gnl\|CDD\|176859	cd07817, SRPBCC_8, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	1.95491e-55

>CP030865.1|AXO37544.1|5882524_5884117_+|phytoene-dehydrogenase
MTSTADAVVIGAGHNGLVAANLLVDAGWDVTVLEATEAPGGAVRSGYVTAPGYLSDLYSSFYPLGYASPVLDGLGLERHGLSWTHAPDVLAHLLPDGRAAVVNRDLDTTAASLEAFAPGDGERWRHAYADWRQVAEPMLQSITTPFPPVRGGLGLLRQLRIGGALRLARRLVLPVRKLGAELFEGEGGPVLLAGCALHTDLSPEEAGSGVYGWLLAMLGQQVGWPVPVGGAQRITDALVARLVERGGRIEYSARVERVLTARGRAMGVRTAGGTDWRARRAVLADVPAPALFLDLVGAAALPPRMVEDLAHFKWDGSTLKVDWALSAPVPWKNRELAGAGTVHLGADMDGLTTYAAELARGELPRDPFLLVGQMSVADPSHSPPGTESLWSYTHLPFRRDWRAEDVAGHVERMEEVLEAAAPGFRASVVGRHVAGPADLEAAQPSLVGGALGGGTAAAYQQLFLRPIPGLGRADTPVDRLYLASASAHPGGGVHGAPGANAARAALARDRAVTGAVYARTIAAAHRAVYR
>CP030865.1|AXO37543.1|5881018_5882422_-|aldehyde-dehydrogenase
MWGAGGEGGELVVHDPADGSPVSRAPVATADEVAKAVEAARGVAAEWAATSPADRAAALHRAADAVEAAAEDLAQATTAEMGKPLDDARGGVAAGIGTLRQYAELAPVRGGRTLHGGHDALDFMAPEPRGVVAAITPWNDPVAVSCGLLGAALVTGNVVLHKPSERTPATGWLLARALDSALPAGVLSLLTGGGEVGAALSGQDVDVVAHVGSTATGRAIAAAGARTGAKVLLENGGSDPLVVDADVDPVWAAEQAALGCFANAGQICVAVERIYVHRDVAEGFLDALVARAEALTVGPGRDPGTQLGPLVDRRHRDHVHGQVTAAVAAGARVRAGGTLPDGPGAFYPATVVEGCRHDMALVREETFGPVAPVVVVDSFSEGLRCAADSPYGLAATVLTGSMSHAQRAWRELPVGTVKVNAVFGGAPGGAAQRRRGSGHGFGYGPELLDEFSTVKAVHLQAPGGGHW
>CP030865.1|AXO37542.1|5880553_5880958_+|hypothetical-protein
MPGREVLPSTLRRSPAKAQRTWEKTHDSAVETYGEGERAHRTAFAAVKHEFEKVGDHWEPKGRKGPSDKQAEGGGPARRANTAGGVDANATKDHLMEVAKKLDVRGRSRMTKPELVKAIEKANNNATRKARGGR
>CP030865.1|AXO37541.1|5879360_5880413_-|ribonuclease-BN
MTVTAPQVVGGRTRSRLPRRIRQLNWRTWRGVLVRSGKGFVTDNCADWAAALTYYGVLALFPSTIVVVALVGLVSDGPRTVDTVIDLAREIGAGSVVGNDAFVGVVRNVVEQQGSAKVLLSFGLLGALWSASGFIGAFTRASNAIYGVREGRPFYRLRPLQIGMAAVTIVLLAVVATGLIVSGPVTDAVGDLLHAGAVARTTWSVAKWPLLAVVAMTLLSLLFWIAPNVRQPRFRWLTPGGALALVAWVLASFGFGLYVANFGSYDVTYGSLGAVIAFLVWLYLSNCALMLGVQVNAELQRGRVMQAGVEEPDDPVLPPRAPADEDKTDTDQTDTDQTDADKTADRLPPG
>CP030865.1|AXO37540.1|5878886_5879258_-|hypothetical-protein
MSSEVKGLVQGPGTGGARVDEFRQPEPSGEDQPEATTAPAGELRTGAPQGMSSADVEERSRLGRFIGMAALPGDRETLVANARENEAPADLVAALETLPEGTRYRTISEVWAALGHKNETTRW
>CP030865.1|AXO37539.1|5878368_5878830_-|uncharacterized-protein
MSGVTEHVDVDVPIRTAYDQWTQFEEFPHFMEGVQEVRQLSDTMTHWTVEIAGVKREFDAEITEQLPDERVAWRSTGGTQQAGVVTFHRLDEGHTRVTLQMEFEPHGAVEKAGDKLGVVDRRAKGDLERFKQFIERRGQETGAWRGSVDRPVP
>CP030865.1|AXO37538.1|5878003_5878267_-|hypothetical-protein
MTDNDRHVWRDEDRTPLHELDQAVARSAMDGQGDDVTANDAGEEAAFGHGPEAVDRGAGPEAERREMTDADRAYRPSTIGRTGPDSG
>CP030865.1|AXO37537.1|5877626_5877839_-|hypothetical-protein
MQQGSGFLSNRQRKLAWLGFLLAAIQAPVSARFTEDSSWLFSLVVALMVATVIIADDGARRRPANARPSD
>CP030865.1|AXO37536.1|5877178_5877625_+|hypothetical-protein
MGHQADGPDRAHRRPEGVSDATVEALGKLSEALECVERARGHLYELHQLIGHADLMLDDAVEMFRSAGHPALAERVDRELLGRNVIAGRWTFQIVEDFDDGYYALFRELDRQARDELVEGRRHLYEAEMKERRRSRGVPGHEARPGTS
>CP030865.1|AXO37535.1|5876653_5877097_-|hypothetical-protein
MAGPPDDPAIRRSAEVGPRRAALASDTMRVPNNRVATRSAAVAARSTLTTLTTAVGTAGLAAAHANPGLLAEVDQHAAGVRDSLDGDRHPLTVATLAGYAEGLREAAAEHGWTPPAEPVDWSSPDWVLTRLLAVCLLARALDPRHLA
>CP030865.1|AXO37545.1|5885029_5885800_-|glycosyl-transferase
MMIEPVQLPSPWGDARLTVVVPTYNEAGNLPVLVERLLALPLPGLKVLVADDNSPDGTGEVADKLAIEHPERVMVVHRPGKEGLGRAYVDGIGRALDDGADFVAQMDADLSHPPEALPGMLGALLSTQASVVIGSRYVPGGELDENWPLYRRALSGWANLYVHTLLRVRIRDLTAGFKIWRAEALREIGLDRVQSNGYSFQVEMHYLATKLGHTILEVPIRFEERRDGDSKMTTATKIESALMPFKLRSRHRNLDS
>CP030865.1|AXO37546.1|5885888_5886338_-|hypothetical-protein
MMAVVEKVIDAPPEQVFEVLADGWTYSDWVVGTAHVRDVDDAWPRVGSNLHHRAGPWPFSLQDKSTVLECQAPHRLVLRAGLWPAGEAIVAFALEPLEDGRTRVTIGEDFAAGPLRWVRTKLNDLVLHLRNRETLARLSDIATRQKPER
>CP030865.1|AXO37547.1|5886604_5888182_+|HAD-superfamily-hydrolase-subfamily-IIIA
MLLDRDGTLVEDVPYNGDPEKVRPVPGAREALDRLRAAGLRLAVVTNQSGLARGCFTADKLRLVNARVEELLGPFDHWAICPHAEADGCACRKPAPGLVHEAAAALGTTPTRCVLIGDIGADTAAAAAAGAAAIMVPTPATRAAEVAAAPTVAADLPDAVSTVLARMRLTAAPERARRSRRGTVLVVRSDAAGDVLVTGPGIRAVAAGADRVVLLCGPRGRAAAELLPGVDEIVEAPLPWIDAPAPPVDPAAMRALTDRLAAVRADEAVVFTSFHQSPLPLALLLRLAGVPRISAISDDYPGSLLDVRHRVPAGVPEPERALSLAAAAGYALPDHDEPALRIRTDRLPPPAAEAGAAGYVVLHPGSSVETRACPEELATRVVRVLGAAGHRVVVTGGPDERGLTARVAAAGGVDLGGRAGLAELAAVVAGAGALVVGNTGPAHLAAALGVPVVSLFAPTVPFGQWGPYRVPTVRLGDAAAPCRDTRATVCPVPGHPCLSAVEPGRVLKALRLLGVPAPVPGGVVG
>CP030865.1|AXO37548.1|5888178_5889153_+|glycosyl-transferase
MNILLWHVHGSWTTSFVHGKHRYLVPVTPDRGPYGLGRARTYPWPDTAVEVTPEDLRDTDVDLVVLQRPEELDLAAEWLGRRPGRDLPAIYVEHNTPKGDVPNTRHPMADRDDLLLTHVTAFNELFWDNGTTRTTVVDHGVVPPAVEWTGELDRLAVVINEPVRRWRVTGTDLLARFAAVAPLDVYGMKVAGLAAHLGLPEDRLTSHDDVPQHAMHAELAKRRAYLHLCRWTSLGLSLVEAMTMGMPVVALAATEAVEAVPPEAGALSTRVDTLVDAARGLLDDRESARRAGAAARAAARSRYGLERFLADWDRLLEEEVCASR
>CP030865.1|AXO37549.1|5889137_5890355_+|glycosyl-transferase-group-1
MRIAMISEHASPLAVLGGEDAGGQNTHVAELSAALAAAGHDVRVYTRLDAVDLPVSVRAPDGYEVVHVPAGPAEPVAKDDLLPYMPAFGDWLADRWRAGDWQPEVVHAHFWMSGLAGLAAARRAGVPVVQTYHALGTVKRRHQGVQDTSPPGRVEHERKLGRSVDRVVAQCQDEVAELVRMGVPRSRMTVVPSGVNLSTFSPLGPVAERDGGRARILTVGRLVERKGFQDVIRAVAEVPDAECVVVGGPPAGLLETDPYALRLRTLARSLGVADRVRLVGAVPREEMGRWYRSADVLVAAPWYEPFGLTPLEAMACGVPVVGTAVGGLIDTVVPGRTGDLVPARDPAALAAAIRGLLGDRIRRFAYATAALERARTRYSWATAADRLTELYGEVATVGRPTRVVA
>CP030865.1|AXO37550.1|5890354_5891047_+|phosphoheptose-isomerase-1
MAATPPAAGGTLLEDHLALLAAALLPLRESERTLARWGEELAHRLAAGGRLLVAGNGGSAAEAQHLTAELVGKLRHDRQPLSAIALHAETSALTAIANDYGYDETFARQVRAHGRPHDILLLLTTSGTSTNLLTAAHAAHQAGLRSWAFTGPAPNPLADLCHEHLAIDSPDGQVVQELHLVASHVLCEYMERALPAALAAPAPAEPVRTGVEVVLGDPDPAAPAGPGGRA
>CP030865.1|AXO37551.1|5891043_5892540_+|ADP-heptose-synthase/D-glycero-beta-D-manno-heptose-7-phosphate-kinase
MTGPVVVLGDTLLDRDVEGLVNRLCPDSPVPVLDETSSVDRPGGAGLAAVFAAAQGAEVALVTAVADDAGGARIGTLLAAAGVRLYALPLAGATPEKVRLRVRGRVLLRHDRGGAAGVPGQPSDAVLRLIADASAVLVSDYGRGVAGHPALRAALAATRAPVVWDPHPRGPAAVPGVHLATPNEPEARDLAKTPPGGSRLAAASRSAQALRRRWQARAVAVTLGGDGALLCHAGSTPLVVPAPPAEGDTCGAGDRFASTATLALARGALVSEAVQEAVAEASAYVAGGGVAAALPAPVRAVAPAVVTGGSDRIGAGAAGEVVARVRAAGGTVVATGGCFDLLHAGHVATLQAARQLGDCLVVCLNSDASVSGLKGPERPVVPQGDRGRLLAALGCVDAVLIFDEPTPEAALSWLRPDIWVKGGDYASGGGAETLPESEILARWGGHTVVVPYLDGRSTTDMIAAARAGRGGTGWPAAAVDPAEAVAQAVVRSTAKGAR
>CP030865.1|AXO37552.1|5892583_5893285_+|short-chain-dehydrogenase/reductase-SDR
MSAPAPGAGPSVLVTGGSSGLGAAVVAAVARSGGRPLVLDRQRPADGVPWAECDLADTRAAEAATRDLAERSGGLDAVVTAAGMDVPGKLADIPAETWERIVTVDLLATAAVIRAALPWLEASRGNIVTVASTLGVKAVSDATAYCAAKFGVVGFTRALAAELAGAVGVTLLIPGGMRTAFFDERDAQYRPGPDAVLNEPSDTAAAVMFALSQPAGCAVREMVVCAAQESSYP
>CP030865.1|AXO37553.1|5893281_5894241_+|ADP-heptose--lipooligosaccharide-heptosyltransferase-II
MILVLRALGVGDLVTAVPALRGLRAGLPGRELVLAAPDWLAPLARLTGAVDRVLPTTGPDRIGWTGPPPEVAVNLHGRGPQSHRALAAVRPARTFAYRNPAAGHPDGPAWDDDEHEVRRWCRLLHAYGLPADPGDLALRRPAAVGVPAGMTLLHPGGKIAAKRWPAERFAGLARELTARGHRVAVTGSAGERALAERVARDGGLPPEAVLAGRTGLAELAALVAGARLVVSGDTGVAHLATGYGTASVVLFGPVPAAHWGPPADRPRHRALGAIEATSVNRDLTGSHGVGSHPTLNAIGIDEVVAAVAAVERVSGAVAA
>CP030865.1|AXO37554.1|5894224_5895214_+|DNA-topoisomerase-IB
MRLRRSDPGRPGYARRRRGKGWLFLDPAGEPVRDAGELARLRELVIPPAWQDVWISPYPNGHIQAIGIDAAGRKQYLYHPHWRRKRDEAKFDHVLEVAHRLPALRDRVTHDLTLRGLRRERVLATVARLLDMGAFRVGSDQYATGDDPTFGVATLRPEHTRPRGGCVVLEFPAKGGIEQVRRIEDAELCRVLLNLRRRRRAQERLFGYWDGRSWRDVRSDEVNDYLRDASGGEMTAKDFRTWHATVLAAAELATVGPQRSATARRRAVAAVMRSVAELLGNTPTVARASYVDPRVVDLYHGGVLAPVQPEMPREAVEKSVLALLEEEAG

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Crispr_ID: CP030865_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030865_11

5995018-5995113

Orphan

Consensus_repeat	Method
GGTGGAACGCCGTGGGTGTCTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030865_11

>merge|CP030865|11|5995018-5995113|CRISPRCasFinder
GGTGGAACGCCGTGGGTGTCTCCCGAGCGTTTTGGCACCCGTGGCGTTCCACTCGGCGTGCATGACGCCGGTGGGTGGAACGCCGTGGGTGTCTCC

>CP030865|11|10|5995018-5995113|CRISPRCasFinder
GGTGGAACGCCGTGGGTGTCTCC	CGAGCGTTTTGGCACCCGTGGCGTTCCACTCGGCGTGCATGACGCCGGTG
GGTGGAACGCCGTGGGTGTCTCC

Protein	Signature genes	Signature genes Name	Protein_function
CP030865.1\|AXO37654.1\|5996633_5997710_+\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|234565
CP030865.1\|AXO37645.1\|5987562_5987868_+\|hypothetical-protein	unknown	unknown	unknown
CP030865.1\|AXO37650.1\|5993270_5994479_+\|chorismate-synthase	unknown	unknown	gnl\|CDD\|235438
CP030865.1\|AXO37659.1\|6000071_6000656_+\|uracil-phosphoribosyltransferase/pyrimidine-operon-regulatory-protein-PyrR	unknown	unknown	gnl\|CDD\|235365
CP030865.1\|AXO37658.1\|5999295_5999706_-\|BldD-protein	unknown	unknown	gnl\|CDD\|319351
CP030865.1\|AXO37656.1\|5998233_5998791_+\|translation-elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
CP030865.1\|AXO37644.1\|5987069_5987531_+\|secreted-protein	unknown	unknown	gnl\|CDD\|377605
CP030865.1\|AXO37661.1\|6001575_6002853_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
CP030865.1\|AXO37643.1\|5985300_5986923_+\|TRAP-type-mannitol/chloroaromatic-compound-transport-system-large-permease-component	unknown	unknown	gnl\|CDD\|223021
CP030865.1\|AXO37642.1\|5983539_5984967_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
CP030865.1\|AXO37649.1\|5992330_5993143_+\|shikimate-5-dehydrogenase-I-alpha	unknown	unknown	gnl\|CDD\|234703
CP030865.1\|AXO37647.1\|5990673_5991135_+\|putative-Holliday-junction-resolvase-YqgF	unknown	unknown	gnl\|CDD\|335420
CP030865.1\|AXO37646.1\|5987864_5990546_+\|alanyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|234701
CP030865.1\|AXO37651.1\|5994475_5994985_+\|shikimate-kinase-I	unknown	unknown	gnl\|CDD\|234654
CP030865.1\|AXO37648.1\|5991131_5992331_+\|YceG-like-protein	unknown	unknown	gnl\|CDD\|376862
CP030865.1\|AXO37652.1\|5995213_5996002_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378238
CP030865.1\|AXO37653.1\|5995998_5996541_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370775
CP030865.1\|AXO37657.1\|5998790_5999225_+\|transcription-termination-protein-NusB	unknown	unknown	gnl\|CDD\|273891
CP030865.1\|AXO37655.1\|5997706_5998147_+\|3-dehydroquinate-dehydratase-II	unknown	unknown	gnl\|CDD\|235443
CP030865.1\|AXO37660.1\|6000652_6001579_+\|aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234849

Protein	Function_ID	Function_description	E-value
CP030865.1\|AXO37654.1\|5996633_5997710_+\|3-dehydroquinate-synthase	gnl\|CDD\|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	2.45328e-170
CP030865.1\|AXO37650.1\|5993270_5994479_+\|chorismate-synthase	gnl\|CDD\|235438	PRK05382, PRK05382, chorismate synthase; Validated.	0
CP030865.1\|AXO37659.1\|6000071_6000656_+\|uracil-phosphoribosyltransferase/pyrimidine-operon-regulatory-protein-PyrR	gnl\|CDD\|235365	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR.	1.96866e-92
CP030865.1\|AXO37658.1\|5999295_5999706_-\|BldD-protein	gnl\|CDD\|319351	cd16837, BldD_C_like, C-terminal domain of BldD and similar transcription factors. The Streptomyces transcription factor BldD dimerizes via an unusual mechanism that inolves a tetrameric c-di-GMP assembly. BdlD is involved in controlling multicellular differentiation in sporulating actinomycetes.	1.30541e-29
CP030865.1\|AXO37656.1\|5998233_5998791_+\|translation-elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	5.59223e-112
CP030865.1\|AXO37644.1\|5987069_5987531_+\|secreted-protein	gnl\|CDD\|377605	pfam06103, DUF948, Bacterial protein of unknown function (DUF948). This family consists of bacterial sequences several of which are thought to be general stress proteins.	6.17971e-16
CP030865.1\|AXO37661.1\|6001575_6002853_+\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	0
CP030865.1\|AXO37643.1\|5985300_5986923_+\|TRAP-type-mannitol/chloroaromatic-compound-transport-system-large-permease-component	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	7.16339e-14
CP030865.1\|AXO37642.1\|5983539_5984967_-\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	1.78077e-06
CP030865.1\|AXO37649.1\|5992330_5993143_+\|shikimate-5-dehydrogenase-I-alpha	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	3.01831e-88
CP030865.1\|AXO37647.1\|5990673_5991135_+\|putative-Holliday-junction-resolvase-YqgF	gnl\|CDD\|335420	pfam03652, RuvX, Holliday junction resolvase. This family of nucleases resolves the Holliday junction intermediates in genetic recombination.	4.5824e-48
CP030865.1\|AXO37646.1\|5987864_5990546_+\|alanyl-tRNA-synthetase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
CP030865.1\|AXO37651.1\|5994475_5994985_+\|shikimate-kinase-I	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	1.17045e-74
CP030865.1\|AXO37648.1\|5991131_5992331_+\|YceG-like-protein	gnl\|CDD\|376862	pfam02618, YceG, YceG-like family. This family of proteins is found in bacteria. Proteins in this family are typically between 332 and 389 amino acids in length. This family was previously incorrectly annotated and names as aminodeoxychorismate lyase. The structure of YceG was solved by X-ray crystallography.	9.22645e-81
CP030865.1\|AXO37653.1\|5995998_5996541_-\|hypothetical-protein	gnl\|CDD\|370775	pfam10002, DUF2243, Predicted membrane protein (DUF2243). This domain, found in various hypothetical bacterial proteins, has no known function.	3.10681e-59
CP030865.1\|AXO37652.1\|5995213_5996002_-\|hypothetical-protein	gnl\|CDD\|378238	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG). Members of this family are the CtaG protein required for assembly of active cytochrome c oxidase of the caa3 type, as found in Bacillus subtilis.	1.81242e-53
CP030865.1\|AXO37655.1\|5997706_5998147_+\|3-dehydroquinate-dehydratase-II	gnl\|CDD\|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	1.5331e-81
CP030865.1\|AXO37657.1\|5998790_5999225_+\|transcription-termination-protein-NusB	gnl\|CDD\|273891	TIGR01951, nusB, transcription antitermination factor NusB. A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10. [Transcription, Transcription factors].	9.22368e-48
CP030865.1\|AXO37660.1\|6000652_6001579_+\|aspartate-carbamoyltransferase	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	0

>CP030865.1|AXO37651.1|5994475_5994985_+|shikimate-kinase-I
MSTRPVCVLVGAPGSGKTTVGTALAEALGVDFRDTDADIENLAGKPIPEIFVDEGEEHFRTLERAAVAAALASHAGVLALGGGAVLAEENRAALIGHTVVHLSVELPDAVKRIGLGAGRPLLALNPRATLKHLMDQRRPLYAEVATATVVTDGRTPEELAAEIAALLKP
>CP030865.1|AXO37650.1|5993270_5994479_+|chorismate-synthase
MTTGRDTLTVVLRWLTAGESHGPALVAMLEGVPAGIEVTTGEISGELARRRLGYGRGARMAFEQDEIEIIGGLRHGVTLGSPVAIRVGNSEWPKWRTVMAADPVDPEELASQARNAPLTRPRPGHADLAGMQKYGHTDARPILERASARETAARVAVGTVAKALVRQALGIEIVSHVVELGPVAAKPGLRPTPEDAARIDADPLRCLDAEASARMVAEVDAAKKAADTLGGVVEVLAYGVPPGLGSHVQWDRKLDARLATALMSIQAIKGVEIGDGWQQARSRGSEAHDEIVPTATGVRRITDRAGGLEGGITTGEPLRVKAAMKPISSLNRALATIDVTTGEPATAINQRSDVCAVPAAAVVAEAMVALVLAEAAVEKFGGDSVAEMRRNLTGYLDSLVIK
>CP030865.1|AXO37649.1|5992330_5993143_+|shikimate-5-dehydrogenase-I-alpha
MADPRRAALVGKPIAHSLSPVIHTAGYAAAGLTGWSYTLIEAGADELPGLVAGLGPEWAGLSVTMPGKEAALALADEVSPVAAAVGAANTLVRRPDGTWYADNTDVTGMVEVLTGAGCVAGAVVTVLGAGGTARAAIAAAARIGAAEVTVVARRPEAVDELRPVAAAAGVPLAGAEWDGAPAHARADLVISTVPKGVADPLADNFDWRPESVFFDVVYDPWPTPLAAAALTAGCRVVSGLDLLLAQAFGQFEQFTGVSAPREAMRAALPV
>CP030865.1|AXO37648.1|5991131_5992331_+|YceG-like-protein
MIDDLDLGFDEQDRGEKGRHRRGAVRRRQGKSGGGRGKTLLALALALVLLGGIGGGAFYGFDRVQNYFVTPDYDGSGTGEVTVEIKQGALLADMADALVAADVVKSTKAFIEAAEENSRSKNIQPGTYKLRKQMSGDAAIAAMLDLKNRIVNGITIPEGLTAKTVYKRLSEKTDIPVKDFEAAAKDPIALGVPDWWFKRSDGKTVKPSIEGFLFPDTYEIPPKATAETVLKLMVNNFLTVTSNMQYAEKVQKERGGITPYEALIVASLAQAEAGNKADLGKVARVAYNRVYGEFPCNCLEMDVTVNYYFELTGQKTKASKDMTAAELDNPRNPYNRKLRGLVPSPINNPGKEALEGALAPPPGKWLYFVAISKDGRSAFAETYDEQLRNERKAKEAGII
>CP030865.1|AXO37647.1|5990673_5991135_+|putative-Holliday-junction-resolvase-YqgF
MAELSRGVRLGVDVGQVRVGVARCDPHGILATPLVTLARDLTAEPDAVPADMAELVRLAAEHEAVGIVVGLPINLAGKHGPAAANVSAYASRLADVMRPIPVTLTDERMSTVVASRRLAERGVRGKRQRAVVDQAAAVEILQSWLDAQRRRTR
>CP030865.1|AXO37646.1|5987864_5990546_+|alanyl-tRNA-synthetase
MKTAEIKRRFLAHFEANGHTVVPSAPLPAISDPNLLFINAGMVQFVPYFLGQQTPPYARATSVQKCIRTPDIDEVGKTSRHGTFFQMNGNFSFGDYFKSGAIPLAWDLATKSVEAGGFGLDPERIWATVYLDDDEAYDIWRATGVPADRIVRRGKADNFWSMGIPGPCGPCSELYYDRGPAYGREGGPEVDEDRYLEFWNLVFMQFERGPGAGKEDFPILGDLPAKNIDTGMGLERMASLLQGVDNLYEIDEVRPILDRAAELTGKRYGVHSGHAANESHPDDVRLRVIADHVRTSLMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGYQDRALPELLPVARDCMAPSYPELAEDFGRISQYAYAEEDAFLATLRAGTTILDTAIAETKSAGKAALSGDKAFQLHDTYGFPIDLTLEIAAEQGLQVDAEGFRRLMADQRSRAKADAQARKTGHTDVSAYRSVLDGGGPVEFTGYTELSRESRVRALLSGGAAVSAAVEGDTIELVLDTTPFYAEGGGQQPDQGLITVGGGQVEVFDVQQPVPGLIVHRAKVVRGEVRSGETGYAEIDVSRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLHDVEQQVNEVLLADLEVHAFVTSQEEARRIGAMALFGEKYGERVRVVEVGDYARELCGGTHVARSAQLGLVKILSEASVGSGVRRIEALVGMDAFGFLAREHLLVSRLAELFRVPGEQVADRVEQTVTQLRDAEKELEKLRAQLVLGGAGALAAQAKDVRGVAYVGTEAPEGAAANDVRTLAQEIRGRIDPARPAVVAVAARANRKASLVVAVNQAARGRGLSAKDLVKAAFSGRGGGSDDLAQGGGLPAAEAPKLLVTVEQAVAGTA
>CP030865.1|AXO37645.1|5987562_5987868_+|hypothetical-protein
MRRLFWLGIGLAVGVLVVRKATRTAQAYTPAGIASGLSESAGGLVESLRAFVDDVRVGMAEREQEIHEAFARGEAYDDQFAELREDPRIGDREIFPEDHQR
>CP030865.1|AXO37644.1|5987069_5987531_+|secreted-protein
MSGGEIAALIAAGAFLMLVLVLAVPILRLRHTVDATTRMITEVNERTAPLLGDVNTTVKNVNVALEQVQTSLDGVNLQLAKVDTMTSHAQNVTANVANLATVVSAAAANPLVKVAAFGYGVRRAASARRHAETEREVRDTIKQQRRAAKRGNR
>CP030865.1|AXO37643.1|5985300_5986923_+|TRAP-type-mannitol/chloroaromatic-compound-transport-system-large-permease-component
MPVTRRPADEQTGRPGAPGGRTGAAVPPVRPEPADPGVPSRRPGQAGPGVPGRGAAAGHPAPPARPDQSGQVMPPAGPPMPAPPAKPGRPGPARGAARPGVPPGPGGGPPGPPGAGPQGDVERTGGVPIGGGRPGGGPARPAGPPGAGQQGDVERTGGVPIGGGRPGGRADEAVRAPGRPPSGDGGRTGPGPHPPRQVPGGSGPARPGEAPPPGGAPRPPMAPGVRGAAAGPAPAARAAAGVARPVGPDERTTGRAAGPGPEPDRSGPGNPAGMAPPPGAPAVARAAAVVPQGEPSGPRPGADGMPAPRPAGPGVDEADAEAGGLRGARSELRRQMRERRRLRMGVLALVSLVLLGAVPLYFGMRTLSRDPVFDTLDALDVPAWAETKTVDNVSGSRWCLQDCRLRERAVESEQGWEQTVAVYEQALAKDGWRRWSVERCPEEKVEGSYTCWRRDELTLDLWVRDPACTPPPIDGAPAPSAPPAPAAAACTGSLVSVKVRNAIDDERTGPTPTTDPSLTGEDPFPTLTDDPLGEATPSPS
>CP030865.1|AXO37642.1|5983539_5984967_-|hypothetical-protein
MAAGGLLVPGSSPLTGGRGGVGDGPPGRPAGDDALRGGAAAGAGDGTRAGRDVVRPRTAARARHGPHAGRNVVRPRTAGPAGNRLDAGGVVGPGPATAGRRSDRRGDGGLVRTLRRADAVPAARCRRPVLAVDGRPARIGRYPAVRRRPGGRTGRRRDAGDRRLLARGAVRAPADGWSRRTTGLGHAGPGAVGRRPRCAGLGAGAHRRRGRAGLVGTAPGHRRTRTGPATGHRVRRVSRAAGRHLRAAPGGARVPTGTSGDRGYVHAGPAATGRGRSPAAHARRRRRAGTTGNGRERRVGAAVRRGPGGLGPAGGRGRGSGRRRTGPARRRRRRRAGTTRNRWLRTRVTGGGWLRARVTGHGWLRAPRRGTRGGPRGGWRHPRRGGRRRPRPGGRAGCGARPARRGRGGLPLRSEFAALLLGGAQVVDPAEFLADDRRVQLGLGPAASPPAALCPRIAPLVGAVRRSLRTTRHHY
>CP030865.1|AXO37652.1|5995213_5996002_-|hypothetical-protein
MSLAHAGHVDGGFPATALVPAALFWAYLAAALRLRDPGGPGWPHARTASFGLGALLLAAGLLWPAGDFVGHMWQHLLIGMLAPLALVLGAPVTLLLRTLDRRTGRALVHLLRHPVARVLGHPVTGLLLTAGGLWLLYLTPLYRATLDSPALHTLVNAHFLLSGCLFAWSIAGPDPGPHRPRVPVRLVVIGFGVAAHATIAQLLYAGLFVDVPATAAELRAGATLMYYLGDLAEIALALALLATWRPERSPRRRAAGAVAANA
>CP030865.1|AXO37653.1|5995998_5996541_-|hypothetical-protein
MSETTAHATRPESATSIRLPATILGVGLGGFVDGIVLHQVLQWHHLLSSTGSDRVGIREYPVDTVPGLQMNTLWDGLFHVVTWVAVLTGLALLYSRVTHSRGRLWRSPMLWGWALIGWGLFNLVEGVIDHHLLGIHHVRSGPNQLWWDLGFLALGVVLIAVGWAIQRRARAVDLCAPERR
>CP030865.1|AXO37654.1|5996633_5997710_+|3-dehydroquinate-synthase
MDEVTRIPVGGERPYDVLVGRDLLGPPPRLLPGAERVAFLHAPPLKALADRLADAVREGGVTPLLIEVPDAEAGKHVDVAAACWDRLGDAGFTRTDAVVGVGGGAVTDLAGFVAATWLRGVRWVPVATSLLGMVDAAVGGKTGINTAAGKNLVGAFHPPAGVLADLATLDSLPAADLAAGMAEVVKCGFIADPVILDLVERDPAAALDPAGPVLRELVERAVRVKAAVVAGDLRESGVREVLNYGHTLAHAIEKVEGYRWRHGHAVSVGLVYAATLARLAGRLDAADAERHRRVLTALDLPTGYRADAWPELLAAMRVDKKARGSRLRFVVLDGLARPAILEAPPDDLLAAAYEEVSS
>CP030865.1|AXO37655.1|5997706_5998147_+|3-dehydroquinate-dehydratase-II
MRVYVLNGPNLGRLGTRQVDVYGVTSYAQLVADCERHGRELGLDVVVRQTDAEHEMLAWLHAAADEEAAVVLNPAAWTHYSVAVRDACAMLRGPLVEVHISNIHAREEFRRHSVISAVATGVICGLGVDGYRLALHHLAARLAAGA
>CP030865.1|AXO37656.1|5998233_5998791_+|translation-elongation-factor-P
MATTNDLKNGLVLNLDGELWAVVEFQHVKPGKGGAFVRTTLKNVLSGKVVDKTFNAGTKVETATVDKRTMQYLYADGEDYVFMDLETFDQITVPGATVGEAANYLLPEAEATVATHESVPLYIELPTSVVLEVTYTEPGLQGDRSTGGNKPATVETGATVQVPLFITTGEKIKVDTRDGRYLGRA
>CP030865.1|AXO37657.1|5998790_5999225_+|transcription-termination-protein-NusB
MAEGPKQQMPARRKARKRALDVLFEADLRDRPPVEVLAGYLERIEQPRPDHLGYAVGLVEGVAAHLDRIDETIASYAEGWTLDRMPVVDRNLARIAVYELLYVDEIDDAVAISEAVELARQMSTDDSPRFLNGILGRIAEYASR
>CP030865.1|AXO37658.1|5999295_5999706_-|BldD-protein
MEEKSNGRWKAVVVGSYERGDRAVTVSRLAELADFYRVPVSELLPDGSGVRHEPTSKIVLDLERLYDEASEDLAYVARYARAIQQQRGDYNGRVLSIRADDLRALAIVYDASPSGLIERLTEHGVLVADPRAFFAS
>CP030865.1|AXO37659.1|6000071_6000656_+|uracil-phosphoribosyltransferase/pyrimidine-operon-regulatory-protein-PyrR
MAYPPAAHSSPPRQPSVKVILAAADVSRVVDRIAHQILEKTQGAADTVLLGIPTRGVPLSRRLADRISTFEDVTVPVGVLDITLYRDDLRRHATRAVGPTDLPSGGIDGKRVILVDDVLFSGRTVRAALDALSDVGRPASVQLAVLVDRGHRQLPIRADYVGKNIPTALAENVKVTLAETDGTDEVRLYGGSPA
>CP030865.1|AXO37660.1|6000652_6001579_+|aspartate-carbamoyltransferase
MIRHLLSGADLDAATATLVLDTAAEMATVAGREVKKLPALRGRTVVNLFYEDSTRTRISFEAAAKRLSADVINFSAKGSSVTKGESLKDTALTLQAMGADAVVVRHPASGAPHRLAEWVDGSVVNAGDGTHEHPTQALLDAYTMRSRLGRLDGLHVAIVGDVLHSRVARSNVLLLSTLGAKVTLIGPPTLIPVDIAAALAPGTDVCYDLDAVLPDVDVVMMLRVQRERMGDSYFPSAREYARRYGLDGPRMRRLPEHAIVMHPGPMNRGMEITPEVADSPRSTIVEQVANGVSVRMAVLYLLLGGNNR
>CP030865.1|AXO37661.1|6001575_6002853_+|dihydroorotase
MTAYLITNVSVVGGEPTDLLIRDGVVAAVGGGLAADDATVIDATGLVALPGLVDLHTHLREPGREDAETVESGSRAAALGGYTAVCAMANTSPVADTAGVVEQVWRLGREAGLVDVQPIGAVTIGLAGERLAELGAMADSAAGVRIFSDDGHCVADPRLMRRALEYVKAFDGVIAQHAEEPRLTEGAQMHEGEVSTRLGLTGWPAVAEEAIIARDVLLAEHVGSRLHVCHVSTAGSVEVLRQAKARGVRVTAEVTPHHLLLTDAKAESYDPVFKVNPPLRTAADIAALREALAEGVIDIIATDHAPHAVEDKECEWAYARPGMLGLETALSIALDVFGPRWDLIAERMSRTPARIAGLAGHGLDPAPGVPANLTLVDPAARRLIEPAEMASRSRNTPYARMTLPGRIVATFLRGEPTVLDGKAVK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP030865_2	2.1\|388329\|28\|CP030865\|CRISPRCasFinder	388329-388356	28	CP030865.1	1885270-1885297	1	0.964
CP030865_3	3.5\|827407\|24\|CP030865\|CRT	827407-827430	24	CP030865.1	827664-827687	1	0.958
CP030865_6	6.1\|3725931\|31\|CP030865\|CRISPRCasFinder	3725931-3725961	31	CP030865.1	4406627-4406657	1	0.968
CP030865_12	12.1\|6376778\|18\|CP030865\|CRISPRCasFinder	6376778-6376795	18	CP030865.1	6376814-6376831	1	0.944
CP030865_2	2.1\|388329\|28\|CP030865\|CRISPRCasFinder	388329-388356	28	CP030865.1	1885327-1885354	2	0.929
CP030865_2	2.1\|388329\|28\|CP030865\|CRISPRCasFinder	388329-388356	28	CP030865.1	1934279-1934306	2	0.929
CP030865_3	3.1\|827206\|24\|CP030865\|CRT	827206-827229	24	CP030865.1	4088989-4089012	2	0.917

1. spacer 2.1|388329|28|CP030865|CRISPRCasFinder matches to position: 1885270-1885297, mismatch: 1, identity: 0.964

agggccgtgagggcatgcccagccagca	CRISPR spacer
agggccgtgagcgcatgcccagccagca	Protospacer
*********** ****************

2. spacer 3.5|827407|24|CP030865|CRT matches to position: 827664-827687, mismatch: 1, identity: 0.958

tcccgggctgcccgatgcagccac	CRISPR spacer
tcccgggctgctcgatgcagccac	Protospacer
***********.************

3. spacer 6.1|3725931|31|CP030865|CRISPRCasFinder matches to position: 4406627-4406657, mismatch: 1, identity: 0.968

ggatgccgtgagcgcgaggagtgagccgggt	CRISPR spacer
ggaggccgtgagcgcgaggagtgagccgggt	Protospacer
*** ***************************

4. spacer 12.1|6376778|18|CP030865|CRISPRCasFinder matches to position: 6376814-6376831, mismatch: 1, identity: 0.944

tcgcggacggaggccatg	CRISPR spacer
tcgcggaccgaggccatg	Protospacer
******** *********

5. spacer 2.1|388329|28|CP030865|CRISPRCasFinder matches to position: 1885327-1885354, mismatch: 2, identity: 0.929

agggccgtgagggcatgcccagccagca	CRISPR spacer
agggccgtgagcgcatgcccagccggca	Protospacer
*********** ************.***

6. spacer 2.1|388329|28|CP030865|CRISPRCasFinder matches to position: 1934279-1934306, mismatch: 2, identity: 0.929

agggccgtgagggcatgcccagccagca	CRISPR spacer
agggccgtgagggcatgcccggcaagca	Protospacer
********************.** ****

7. spacer 3.1|827206|24|CP030865|CRT matches to position: 4088989-4089012, mismatch: 2, identity: 0.917

tcgggggccggttgatgcagccac	CRISPR spacer
tcgagggccggttgatgccgccac	Protospacer
***.************** *****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030865_3	3.1\|827206\|24\|CP030865\|CRT	827206-827229	24	NZ_CP020945	Pantoea ananatis strain PNA 97-1R plasmid unamed2, complete sequence	113973-113996	4	0.833
CP030865_3	3.5\|827407\|24\|CP030865\|CRT	827407-827430	24	NZ_CP021649	Acidovorax sp. T1 plasmid p1-T1, complete sequence	65907-65930	4	0.833
CP030865_3	3.5\|827407\|24\|CP030865\|CRT	827407-827430	24	NC_005916	Mycobacterium ulcerans Agy99 plasmid pMUM001, complete sequence	73084-73107	5	0.792
CP030865_3	3.5\|827407\|24\|CP030865\|CRT	827407-827430	24	NC_005916	Mycobacterium ulcerans Agy99 plasmid pMUM001, complete sequence	137909-137932	5	0.792
CP030865_3	3.5\|827407\|24\|CP030865\|CRT	827407-827430	24	NC_019018	Mycobacterium marinum DL240490 plasmid pMUM003, complete sequence	680-703	5	0.792
CP030865_3	3.5\|827407\|24\|CP030865\|CRT	827407-827430	24	NC_011355	Mycobacterium liflandii 128FXT plasmid pMUM002, complete sequence	88526-88549	5	0.792
CP030865_3	3.5\|827407\|24\|CP030865\|CRT	827407-827430	24	NC_011355	Mycobacterium liflandii 128FXT plasmid pMUM002, complete sequence	156270-156293	5	0.792
CP030865_3	3.5\|827407\|24\|CP030865\|CRT	827407-827430	24	NZ_AP017625	Mycobacterium ulcerans subsp. shinshuense strain ATCC 33728 plasmid pShTP, complete sequence	87927-87950	5	0.792
CP030865_3	3.5\|827407\|24\|CP030865\|CRT	827407-827430	24	NZ_AP017625	Mycobacterium ulcerans subsp. shinshuense strain ATCC 33728 plasmid pShTP, complete sequence	152896-152919	5	0.792
CP030865_2	2.1\|388329\|28\|CP030865\|CRISPRCasFinder	388329-388356	28	NZ_CP021031	Rhizobium sp. NXC14 plasmid pRspNXC14a, complete sequence	59240-59267	6	0.786
CP030865_2	2.1\|388329\|28\|CP030865\|CRISPRCasFinder	388329-388356	28	NZ_CP006989	Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence	359350-359377	6	0.786
CP030865_2	2.1\|388329\|28\|CP030865\|CRISPRCasFinder	388329-388356	28	NZ_CP013526	Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence	993586-993613	6	0.786
CP030865_2	2.1\|388329\|28\|CP030865\|CRISPRCasFinder	388329-388356	28	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	797393-797420	6	0.786
CP030865_2	2.1\|388329\|28\|CP030865\|CRISPRCasFinder	388329-388356	28	NZ_CP020952	Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence	208884-208911	6	0.786
CP030865_2	2.1\|388329\|28\|CP030865\|CRISPRCasFinder	388329-388356	28	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	846834-846861	6	0.786
CP030865_2	2.1\|388329\|28\|CP030865\|CRISPRCasFinder	388329-388356	28	NZ_CP013531	Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence	825641-825668	6	0.786
CP030865_2	2.1\|388329\|28\|CP030865\|CRISPRCasFinder	388329-388356	28	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	293298-293325	6	0.786
CP030865_2	2.1\|388329\|28\|CP030865\|CRISPRCasFinder	388329-388356	28	NZ_CP013536	Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence	860494-860521	6	0.786
CP030865_2	2.1\|388329\|28\|CP030865\|CRISPRCasFinder	388329-388356	28	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	892158-892185	6	0.786
CP030865_2	2.1\|388329\|28\|CP030865\|CRISPRCasFinder	388329-388356	28	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	854792-854819	6	0.786
CP030865_2	2.1\|388329\|28\|CP030865\|CRISPRCasFinder	388329-388356	28	NZ_CP013584	Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence	825640-825667	6	0.786
CP030865_2	2.1\|388329\|28\|CP030865\|CRISPRCasFinder	388329-388356	28	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	846834-846861	6	0.786
CP030865_2	2.1\|388329\|28\|CP030865\|CRISPRCasFinder	388329-388356	28	NZ_CP021126	Rhizobium sp. Kim5 plasmid pRetKim5b, complete sequence	365880-365907	6	0.786
CP030865_2	2.1\|388329\|28\|CP030865\|CRISPRCasFinder	388329-388356	28	CP007642	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803a, complete sequence	335017-335044	6	0.786
CP030865_6	6.1\|3725931\|31\|CP030865\|CRISPRCasFinder	3725931-3725961	31	NZ_CP045310	Micromonospora terminaliae strain DSM 101760 plasmid pLB1, complete sequence	5040-5070	7	0.774
CP030865_6	6.1\|3725931\|31\|CP030865\|CRISPRCasFinder	3725931-3725961	31	NZ_CP045310	Micromonospora terminaliae strain DSM 101760 plasmid pLB1, complete sequence	7733-7763	7	0.774
CP030865_5	5.1\|2291217\|33\|CP030865\|CRISPRCasFinder	2291217-2291249	33	NZ_CP015090	Pelagibaca abyssi strain JLT2014 plasmid pPABY2, complete sequence	2631-2663	8	0.758
CP030865_6	6.1\|3725931\|31\|CP030865\|CRISPRCasFinder	3725931-3725961	31	NZ_CP006369	Aureimonas sp. AU20 plasmid pAU20b, complete sequence	308917-308947	8	0.742

1. spacer 3.1|827206|24|CP030865|CRT matches to NZ_CP020945 (Pantoea ananatis strain PNA 97-1R plasmid unamed2, complete sequence) position: , mismatch: 4, identity: 0.833

tcgggggccggttgatgcagccac	CRISPR spacer
gctctggccggttgatgcagccac	Protospacer
 *   *******************

2. spacer 3.5|827407|24|CP030865|CRT matches to NZ_CP021649 (Acidovorax sp. T1 plasmid p1-T1, complete sequence) position: , mismatch: 4, identity: 0.833

tcccgggctgcccgatgcagccac	CRISPR spacer
acccgggctgcccgatgccgccca	Protospacer
 ***************** ***

3. spacer 3.5|827407|24|CP030865|CRT matches to NC_005916 (Mycobacterium ulcerans Agy99 plasmid pMUM001, complete sequence) position: , mismatch: 5, identity: 0.792

tcccgggctgcccgatgcagccac	CRISPR spacer
gagtaggctgcccgatgcagccac	Protospacer
   ..*******************

4. spacer 3.5|827407|24|CP030865|CRT matches to NC_005916 (Mycobacterium ulcerans Agy99 plasmid pMUM001, complete sequence) position: , mismatch: 5, identity: 0.792

tcccgggctgcccgatgcagccac	CRISPR spacer
gagtaggctgcccgatgcagccac	Protospacer
   ..*******************

5. spacer 3.5|827407|24|CP030865|CRT matches to NC_019018 (Mycobacterium marinum DL240490 plasmid pMUM003, complete sequence) position: , mismatch: 5, identity: 0.792

tcccgggctgcccgatgcagccac	CRISPR spacer
gagtaggctgcccgatgcagccac	Protospacer
   ..*******************

6. spacer 3.5|827407|24|CP030865|CRT matches to NC_011355 (Mycobacterium liflandii 128FXT plasmid pMUM002, complete sequence) position: , mismatch: 5, identity: 0.792

tcccgggctgcccgatgcagccac	CRISPR spacer
gagtaggctgcccgatgcagccac	Protospacer
   ..*******************

7. spacer 3.5|827407|24|CP030865|CRT matches to NC_011355 (Mycobacterium liflandii 128FXT plasmid pMUM002, complete sequence) position: , mismatch: 5, identity: 0.792

tcccgggctgcccgatgcagccac	CRISPR spacer
gagtaggctgcccgatgcagccac	Protospacer
   ..*******************

8. spacer 3.5|827407|24|CP030865|CRT matches to NZ_AP017625 (Mycobacterium ulcerans subsp. shinshuense strain ATCC 33728 plasmid pShTP, complete sequence) position: , mismatch: 5, identity: 0.792

tcccgggctgcccgatgcagccac	CRISPR spacer
gagtaggctgcccgatgcagccac	Protospacer
   ..*******************

9. spacer 3.5|827407|24|CP030865|CRT matches to NZ_AP017625 (Mycobacterium ulcerans subsp. shinshuense strain ATCC 33728 plasmid pShTP, complete sequence) position: , mismatch: 5, identity: 0.792

tcccgggctgcccgatgcagccac	CRISPR spacer
gagtaggctgcccgatgcagccac	Protospacer
   ..*******************

10. spacer 2.1|388329|28|CP030865|CRISPRCasFinder matches to NZ_CP021031 (Rhizobium sp. NXC14 plasmid pRspNXC14a, complete sequence) position: , mismatch: 6, identity: 0.786

agggccgtgagggcatgcccagccagca	CRISPR spacer
gcagccgggagggcaggcccagccagcg	Protospacer
. .**** ******* ***********.

11. spacer 2.1|388329|28|CP030865|CRISPRCasFinder matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 6, identity: 0.786

agggccgtgagggcatgcccagccagca	CRISPR spacer
gcagccgggagggcacgcccagccagcg	Protospacer
. .**** *******.***********.

12. spacer 2.1|388329|28|CP030865|CRISPRCasFinder matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 6, identity: 0.786

agggccgtgagggcatgcccagccagca	CRISPR spacer
gcagccgggagggcaagcccagccagcg	Protospacer
. .**** ******* ***********.

13. spacer 2.1|388329|28|CP030865|CRISPRCasFinder matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 6, identity: 0.786

agggccgtgagggcatgcccagccagca	CRISPR spacer
gcagccgggagggcaggcccagccagcg	Protospacer
. .**** ******* ***********.

14. spacer 2.1|388329|28|CP030865|CRISPRCasFinder matches to NZ_CP020952 (Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence) position: , mismatch: 6, identity: 0.786

agggccgtgagggcatgcccagccagca	CRISPR spacer
gcagccgggagggcaagcccagccagcg	Protospacer
. .**** ******* ***********.

15. spacer 2.1|388329|28|CP030865|CRISPRCasFinder matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 6, identity: 0.786

agggccgtgagggcatgcccagccagca	CRISPR spacer
gcagccgggagggcaagcccagccagcg	Protospacer
. .**** ******* ***********.

16. spacer 2.1|388329|28|CP030865|CRISPRCasFinder matches to NZ_CP013531 (Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence) position: , mismatch: 6, identity: 0.786

agggccgtgagggcatgcccagccagca	CRISPR spacer
gcagccgggagggcacgcccagccagcg	Protospacer
. .**** *******.***********.

17. spacer 2.1|388329|28|CP030865|CRISPRCasFinder matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 6, identity: 0.786

agggccgtgagggcatgcccagccagca	CRISPR spacer
gcagccgggagggcaggcccagccagcg	Protospacer
. .**** ******* ***********.

18. spacer 2.1|388329|28|CP030865|CRISPRCasFinder matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 6, identity: 0.786

agggccgtgagggcatgcccagccagca	CRISPR spacer
gcagccgggagggcacgcccagccagcg	Protospacer
. .**** *******.***********.

19. spacer 2.1|388329|28|CP030865|CRISPRCasFinder matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 6, identity: 0.786

agggccgtgagggcatgcccagccagca	CRISPR spacer
gcagccgggagggcacgcccagccagcg	Protospacer
. .**** *******.***********.

20. spacer 2.1|388329|28|CP030865|CRISPRCasFinder matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 6, identity: 0.786

agggccgtgagggcatgcccagccagca	CRISPR spacer
gcagccgggagggcaagcccagccagcg	Protospacer
. .**** ******* ***********.

21. spacer 2.1|388329|28|CP030865|CRISPRCasFinder matches to NZ_CP013584 (Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence) position: , mismatch: 6, identity: 0.786

agggccgtgagggcatgcccagccagca	CRISPR spacer
gcagccgggagggcacgcccagccagcg	Protospacer
. .**** *******.***********.

22. spacer 2.1|388329|28|CP030865|CRISPRCasFinder matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 6, identity: 0.786

agggccgtgagggcatgcccagccagca	CRISPR spacer
gcagccgggagggcaagcccagccagcg	Protospacer
. .**** ******* ***********.

23. spacer 2.1|388329|28|CP030865|CRISPRCasFinder matches to NZ_CP021126 (Rhizobium sp. Kim5 plasmid pRetKim5b, complete sequence) position: , mismatch: 6, identity: 0.786

agggccgtgagggcatgcccagccagca	CRISPR spacer
gcagccgggagggcacgcccagccagcg	Protospacer
. .**** *******.***********.

24. spacer 2.1|388329|28|CP030865|CRISPRCasFinder matches to CP007642 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803a, complete sequence) position: , mismatch: 6, identity: 0.786

agggccgtgagggcatgcccagccagca	CRISPR spacer
gaagccgggagggcacgcccagccagcg	Protospacer
...**** *******.***********.

25. spacer 6.1|3725931|31|CP030865|CRISPRCasFinder matches to NZ_CP045310 (Micromonospora terminaliae strain DSM 101760 plasmid pLB1, complete sequence) position: , mismatch: 7, identity: 0.774

ggatgccgtgagcgcgaggagtgagccgggt	CRISPR spacer
tgaccgagtgagcgcgaggagtgagccggtg	Protospacer
 **.   **********************

26. spacer 6.1|3725931|31|CP030865|CRISPRCasFinder matches to NZ_CP045310 (Micromonospora terminaliae strain DSM 101760 plasmid pLB1, complete sequence) position: , mismatch: 7, identity: 0.774

ggatgccgtgagcgcgaggagtgagccgggt	CRISPR spacer
tgaccgagtgagcgcgaggagtgagccggtg	Protospacer
 **.   **********************

27. spacer 5.1|2291217|33|CP030865|CRISPRCasFinder matches to NZ_CP015090 (Pelagibaca abyssi strain JLT2014 plasmid pPABY2, complete sequence) position: , mismatch: 8, identity: 0.758

ccggtacggatcccggctgtccgccggcggcgc	CRISPR spacer
catgcggggatcgcggctgcccgccggcggcac	Protospacer
*  *.. ***** ******.***********.*

28. spacer 6.1|3725931|31|CP030865|CRISPRCasFinder matches to NZ_CP006369 (Aureimonas sp. AU20 plasmid pAU20b, complete sequence) position: , mismatch: 8, identity: 0.742

ggatgccgtgagcgcgaggagtgagccgggt	CRISPR spacer
acctgccgtgagcgcgaggagcgagacgctc	Protospacer
.  ******************.*** **  .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage