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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP022683 Staphylococcus aureus strain 78 plasmid pPS00085.1A.1, complete sequence 0 crisprs RT 0 0 0 0
CP022682 Staphylococcus aureus strain 78 chromosome, complete genome 7 crisprs cas3,DEDDh,DinG,csa3,WYL 2 2 9 0

Results visualization

1. CP022682
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP022682_1 526213-526302 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP022682_2 1042680-1042776 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP022682_3 1764099-1764181 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP022682_4 2090071-2090150 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP022682_5 2218575-2218660 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP022682_6 2335903-2335991 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP022682_7 2485629-2485720 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP022682_4 4.1|2090094|34|CP022682|CRISPRCasFinder 2090094-2090127 34 CP022682.1 813357-813390 0 1.0
CP022682_4 4.1|2090094|34|CP022682|CRISPRCasFinder 2090094-2090127 34 CP022682.1 857770-857803 0 1.0
CP022682_1 1.1|526244|28|CP022682|CRISPRCasFinder 526244-526271 28 CP022682.1 641521-641548 1 0.964
CP022682_1 1.1|526244|28|CP022682|CRISPRCasFinder 526244-526271 28 CP022682.1 813234-813261 1 0.964
CP022682_1 1.1|526244|28|CP022682|CRISPRCasFinder 526244-526271 28 CP022682.1 1974931-1974958 1 0.964
CP022682_4 4.1|2090094|34|CP022682|CRISPRCasFinder 2090094-2090127 34 CP022682.1 374711-374744 1 0.971
CP022682_4 4.1|2090094|34|CP022682|CRISPRCasFinder 2090094-2090127 34 CP022682.1 767245-767278 1 0.971
CP022682_4 4.1|2090094|34|CP022682|CRISPRCasFinder 2090094-2090127 34 CP022682.1 1124905-1124938 1 0.971
CP022682_1 1.1|526244|28|CP022682|CRISPRCasFinder 526244-526271 28 CP022682.1 822333-822360 2 0.929
CP022682_1 1.1|526244|28|CP022682|CRISPRCasFinder 526244-526271 28 CP022682.1 1214824-1214851 2 0.929
CP022682_4 4.1|2090094|34|CP022682|CRISPRCasFinder 2090094-2090127 34 CP022682.1 861937-861970 2 0.941
CP022682_4 4.1|2090094|34|CP022682|CRISPRCasFinder 2090094-2090127 34 CP022682.1 1379093-1379126 2 0.941

1. spacer 4.1|2090094|34|CP022682|CRISPRCasFinder matches to position: 813357-813390, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

2. spacer 4.1|2090094|34|CP022682|CRISPRCasFinder matches to position: 857770-857803, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

3. spacer 1.1|526244|28|CP022682|CRISPRCasFinder matches to position: 641521-641548, mismatch: 1, identity: 0.964

acgaaaagtcagcttacgataaagtgca	CRISPR spacer
acgaaaagtcagcttacgataatgtgca	Protospacer
********************** *****

4. spacer 1.1|526244|28|CP022682|CRISPRCasFinder matches to position: 813234-813261, mismatch: 1, identity: 0.964

acgaaaagtcagcttacgataaagtgca	CRISPR spacer
acgaaaagtcagcttacgataatgtgca	Protospacer
********************** *****

5. spacer 1.1|526244|28|CP022682|CRISPRCasFinder matches to position: 1974931-1974958, mismatch: 1, identity: 0.964

acgaaaagtcagcttacgataaagtgca	CRISPR spacer
acgaaaagtcagcttacgataatgtgca	Protospacer
********************** *****

6. spacer 4.1|2090094|34|CP022682|CRISPRCasFinder matches to position: 374711-374744, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctttgttgg	Protospacer
*************************** ******

7. spacer 4.1|2090094|34|CP022682|CRISPRCasFinder matches to position: 767245-767278, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctttgttgg	Protospacer
*************************** ******

8. spacer 4.1|2090094|34|CP022682|CRISPRCasFinder matches to position: 1124905-1124938, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattatctgtgttgg	Protospacer
*********************** **********

9. spacer 1.1|526244|28|CP022682|CRISPRCasFinder matches to position: 822333-822360, mismatch: 2, identity: 0.929

acgaaaagtcagcttacgataaagtgca	CRISPR spacer
acgaaaagtcagcttacaataatgtgca	Protospacer
*****************.**** *****

10. spacer 1.1|526244|28|CP022682|CRISPRCasFinder matches to position: 1214824-1214851, mismatch: 2, identity: 0.929

acgaaaagtcagcttacgataaagtgca	CRISPR spacer
acgaaaagtcagcttacaataatgtgca	Protospacer
*****************.**** *****

11. spacer 4.1|2090094|34|CP022682|CRISPRCasFinder matches to position: 861937-861970, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaatcctctatgttgg	Protospacer
**********************.****.******

12. spacer 4.1|2090094|34|CP022682|CRISPRCasFinder matches to position: 1379093-1379126, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtgggatttcttttcgaaattctctgtgttgg	Protospacer
****.*.***************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP022682_1 1.1|526244|28|CP022682|CRISPRCasFinder 526244-526271 28 NC_021536 Synechococcus phage S-IOM18 genomic sequence 159754-159781 5 0.821
CP022682_1 1.1|526244|28|CP022682|CRISPRCasFinder 526244-526271 28 LN846932 Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome 10627-10654 6 0.786
CP022682_2 2.1|1042714|29|CP022682|CRISPRCasFinder 1042714-1042742 29 NZ_CP015322 Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence 703321-703349 6 0.793
CP022682_1 1.1|526244|28|CP022682|CRISPRCasFinder 526244-526271 28 NZ_CP015319 Mesorhizobium amorphae CCNWGS0123 plasmid pM0123a 9464-9491 7 0.75

1. spacer 1.1|526244|28|CP022682|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 5, identity: 0.821

acgaaaagtcagcttacgataaagtgca	CRISPR spacer
acgaaaactcaccttacgataaaattta	Protospacer
******* *** ***********.* .*

2. spacer 1.1|526244|28|CP022682|CRISPRCasFinder matches to LN846932 (Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome) position: , mismatch: 6, identity: 0.786

acgaaaagtcagcttacgataaagtgca	CRISPR spacer
acgaaaaatcagattacgataaattagt	Protospacer
*******.**** ********** *.  

3. spacer 2.1|1042714|29|CP022682|CRISPRCasFinder matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 6, identity: 0.793

taaaagagggatacttgcgctgagcgcat	CRISPR spacer
gatcaaagggttccttgcgctgagcgcat	Protospacer
 *  *.**** * ****************

4. spacer 1.1|526244|28|CP022682|CRISPRCasFinder matches to NZ_CP015319 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123a) position: , mismatch: 7, identity: 0.75

acgaaaagtcagcttacgataaagtgca	CRISPR spacer
tcgaaatgtcagcttacgaaaaagcttt	Protospacer
 ***** ************ ****. . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 310292 : 353163 67 Staphylococcus_phage(88.06%) tail,holin,capsid,lysis,protease,head,portal,terminase NA
DBSCAN-SWA_2 745639 : 753459 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_3 765431 : 779624 12 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_4 1027911 : 1036384 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 1297858 : 1329302 42 Bacillus_phage(29.63%) protease,portal,capsid NA
DBSCAN-SWA_6 1613790 : 1622102 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_7 1691574 : 1700617 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_8 1829451 : 1891558 58 Staphylococcus_phage(95.74%) protease,tRNA NA
DBSCAN-SWA_9 2040822 : 2085428 66 Staphylococcus_phage(86.15%) tail,holin,terminase,capsid,protease,portal,head NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage