CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	9 crisprs	RT,csa3,cas3,DEDDh,DinG,WYL	7	2	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP022904_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP022904_1

171458-171542

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP022904_1

>merge|CP022904|1|171458-171542|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTGTGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTG

>CP022904|1|1|171458-171542|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTG	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
CP022904.1\|AXJ62935.1\|160603_161809_+\|hypothetical-protein	unknown	unknown	unknown
CP022904.1\|AXJ62936.1\|161809_163015_+\|putative-glycosyl-transferase	unknown	unknown	gnl\|CDD\|340825
CP022904.1\|AXJ62952.1\|176966_178142_+\|Formate-dehydrogenase	unknown	unknown	gnl\|CDD\|181041
CP022904.1\|AXJ62946.1\|171985_172498_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379428
CP022904.1\|AXJ62949.1\|174561_175323_+\|Putative-aliphatic-sulfonates-transport-permease-protein-SsuC	unknown	unknown	gnl\|CDD\|223673
CP022904.1\|AXJ62950.1\|175332_176367_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224871
CP022904.1\|AXJ62947.1\|172839_173580_+\|Bicarbonate-transport-ATP-binding-protein-CmpD	unknown	unknown	gnl\|CDD\|224041
CP022904.1\|AXJ62939.1\|164523_165786_+\|UDP-N-acetyl-D-glucosamine-6-dehydrogenase	unknown	unknown	gnl\|CDD\|223749
CP022904.1\|AXJ62953.1\|178527_179778_+\|putative-transporter	unknown	unknown	gnl\|CDD\|340887
CP022904.1\|AXJ62943.1\|168215_169703_+\|Putative-aldehyde-dehydrogenase-AldA	unknown	unknown	gnl\|CDD\|143435
CP022904.1\|AXJ62945.1\|171603_171807_-\|hypothetical-protein	unknown	unknown	unknown
CP022904.1\|AXJ62937.1\|163025_163583_+\|putative-sugar-transferase-EpsL	unknown	unknown	gnl\|CDD\|225059
CP022904.1\|AXJ62942.1\|167405_167789_-\|Inner-membrane-protein-YbaN	unknown	unknown	gnl\|CDD\|377291
CP022904.1\|AXJ62941.1\|167072_167399_-\|Heme-oxygenase-(staphylobilin-producing)-2	unknown	unknown	gnl\|CDD\|183968
CP022904.1\|AXJ62948.1\|173593_174565_+\|Bicarbonate-transport-ATP-binding-protein-CmpC	unknown	unknown	gnl\|CDD\|270271
CP022904.1\|AXJ62951.1\|176583_176943_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227896
CP022904.1\|AXJ62944.1\|170349_171309_+\|Cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	unknown	unknown	gnl\|CDD\|224151
CP022904.1\|AXJ62940.1\|165862_167008_+\|UDP-N-acetylglucosamine-2-epimerase	unknown	unknown	gnl\|CDD\|223458
CP022904.1\|AXJ62954.1\|180224_187400_+\|Gramicidin-S-synthase-2	unknown	unknown	gnl\|CDD\|237108
CP022904.1\|AXJ62938.1\|163582_164470_+\|UDP-glucose-4-epimerase	unknown	unknown	gnl\|CDD\|187543

Protein	Function_ID	Function_description	E-value
CP022904.1\|AXJ62950.1\|175332_176367_+\|hypothetical-protein	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	2.63983e-20
CP022904.1\|AXJ62936.1\|161809_163015_+\|putative-glycosyl-transferase	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	3.86871e-74
CP022904.1\|AXJ62946.1\|171985_172498_+\|hypothetical-protein	gnl\|CDD\|379428	pfam14026, DUF4242, Protein of unknown function (DUF4242). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 90 and 170 amino acids in length. There is a single completely conserved residue C that may be functionally important.	2.56603e-26
CP022904.1\|AXJ62949.1\|174561_175323_+\|Putative-aliphatic-sulfonates-transport-permease-protein-SsuC	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	9.21515e-74
CP022904.1\|AXJ62951.1\|176583_176943_+\|hypothetical-protein	gnl\|CDD\|227896	COG5609, COG5609, Uncharacterized conserved protein [Function unknown].	6.06834e-49
CP022904.1\|AXJ62939.1\|164523_165786_+\|UDP-N-acetyl-D-glucosamine-6-dehydrogenase	gnl\|CDD\|223749	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].	0
CP022904.1\|AXJ62953.1\|178527_179778_+\|putative-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.61322e-72
CP022904.1\|AXJ62943.1\|168215_169703_+\|Putative-aldehyde-dehydrogenase-AldA	gnl\|CDD\|143435	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.	0
CP022904.1\|AXJ62948.1\|173593_174565_+\|Bicarbonate-transport-ATP-binding-protein-CmpC	gnl\|CDD\|270271	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes nitrate (NrtA) and bicarbonate (CmpA) receptors. These domains are found in eubacterial perisplamic-binding proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. These binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.75927e-52
CP022904.1\|AXJ62937.1\|163025_163583_+\|putative-sugar-transferase-EpsL	gnl\|CDD\|225059	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane].	3.08096e-87
CP022904.1\|AXJ62942.1\|167405_167789_-\|Inner-membrane-protein-YbaN	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	5.80598e-41
CP022904.1\|AXJ62941.1\|167072_167399_-\|Heme-oxygenase-(staphylobilin-producing)-2	gnl\|CDD\|183968	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI.	1.40112e-64
CP022904.1\|AXJ62952.1\|176966_178142_+\|Formate-dehydrogenase	gnl\|CDD\|181041	PRK07574, PRK07574, NAD-dependent formate dehydrogenase.	0
CP022904.1\|AXJ62947.1\|172839_173580_+\|Bicarbonate-transport-ATP-binding-protein-CmpD	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	2.18703e-112
CP022904.1\|AXJ62944.1\|170349_171309_+\|Cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	4.11026e-108
CP022904.1\|AXJ62940.1\|165862_167008_+\|UDP-N-acetylglucosamine-2-epimerase	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	0
CP022904.1\|AXJ62954.1\|180224_187400_+\|Gramicidin-S-synthase-2	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
CP022904.1\|AXJ62938.1\|163582_164470_+\|UDP-glucose-4-epimerase	gnl\|CDD\|187543	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.93098e-117

>CP022904.1|AXJ62944.1|170349_171309_+|Cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter
MNGKKANTINRYKYFHHVNHQKIQQSSKKTLWASLIITLLFTVIEFVGGLVSNSLALLSDSFHMLSDVLALGLSMLAIYFASKKPTARYTFGYLRFEILVAFLNGLALIVISIWILYEAIVRIIYPQPIESGIMFMIASIGLLVNIILTIILVRSLKQEDNINIQSALWHFMGDLLNSIGVIVAVVLIYFTGWRIIDPIISIVISLIILRGGYKITRNAWLILMESVPQHLDTDQIMADIKNIDGILDVHEFHLWSITTEHYSLSAHVVLDKKYEGDDYQAIDQVSSLLKEKYGIAHSTLQIENLQLNPLDEPYFDKLT
>CP022904.1|AXJ62943.1|168215_169703_+|Putative-aldehyde-dehydrogenase-AldA
MAVNVRDYIAENYGLFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAFESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIETEEGTVNDIDKDTMSIVRHEPIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEVLPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAKHLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQDEATQMGSQTGKDQLDKIQSYIDAAKESDAQILAGGHRLTENGLDKGFFFEPTLIAVPDNHHKLAQEEIFGPVLTVIKVKDDQEAIDIANDSEYGLAGGVFSQNITRALNIAKAVRTGRIWINTYNQVPEGAPFGGYKKSGIGRETYKGALSNYQQVKNIYIDTSNALKGLY
>CP022904.1|AXJ62942.1|167405_167789_-|Inner-membrane-protein-YbaN
MRLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYVENFYLHRGYTLQQKIKILISLYIVIGFSIYMVDVLAVRVGLIIMVIIQTAVLFTFVKTLPKSNHKIEE
>CP022904.1|AXJ62941.1|167072_167399_-|Heme-oxygenase-(staphylobilin-producing)-2
MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDIGYHYQK
>CP022904.1|AXJ62940.1|165862_167008_+|UDP-N-acetylglucosamine-2-epimerase
MKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSIFDIQADHDLNIMQDQQTLADLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYHQIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERIFITGNTVIDALSTTVQNDFVSTIINKHKGKKVILLTAHRRENIGEPMHQIFKAVRDLADEYKDVVFIYPMHRNPKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAPTFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGDGQASRRICEAIEYYFGLRSDKPDEFVPLRHK
>CP022904.1|AXJ62939.1|164523_165786_+|UDP-N-acetyl-D-glucosamine-6-dehydrogenase
MKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQSGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLEKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDICLVHCPERVLPGKILEELVHNNRIIGGVTKACIEAGKYVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMANKHPRVNIHQPGPGVGGHCLAVDPYFIIAKDPENAKLIQTGREINNSMPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELDFVEHDMSHAVKDASLVLILSDHSEFKNLSDSHFDKMKHKVIFDTKNVVKSSFEDVSYYNYGNIFNFIDK
>CP022904.1|AXJ62938.1|163582_164470_+|UDP-glucose-4-epimerase
MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINMPSVLNKYFNKLSVFRKLFGNLTYSNTLYENNNALEVIPGKMSLVIADIMDETTTKDKA
>CP022904.1|AXJ62937.1|163025_163583_+|putative-sugar-transferase-EpsL
MKRLFDVVSSIYGLVVLSPILLITALLIKMESPGPAIFKQKRPTINNELFNIYKFRSMKIDTPNVATDLMDSTSYITKTGKVIRKTSIDELPQLLNVLKGEMSIVGPRPALYNQYELIEKRTKANVHTIRPGVTGLAQVMGRDDITDDQKVAYDHYYLTHQSMMLDMYIIYKTIKNIVTSEGVHH
>CP022904.1|AXJ62936.1|161809_163015_+|putative-glycosyl-transferase
MSEKKILILCQYFYPEYVSSATLPTQLAEDLIANHINVDVMCGWPYEYSNHKQVSKTEMHRGIRIRRLKYSRFNNKSKVGRIINFFSLFSKFVINIPKMLKYDQILVYSNPPILPLIPDVLHRLLKKKYSFVVYDIAPDNAIKTGATRPGSMIDKLMRYINRHVYKNAENVIVLGTEMKNYLLNHRISKNADNIHVIPNWYDMRQLQDNRIYNDTFKAYREQYDKILLYSGNMGQLQDMETLISFLKLNKDQPQTLTILCGHGKKFADVKTAIEDHRIENVKMFEFLTGTDYADVLKIADVCIASLIKEGVGLGVPSKNYGYLAAKKPLVLIMDKQSDIVQHVEQYDAGIQIDNGDAHAIYNFINTHSSKELHEMGERAHQLFKDKYTREINTMKYYNLLK
>CP022904.1|AXJ62935.1|160603_161809_+|hypothetical-protein
MVKKVFIMDSVKTIIGTLLIALGLQFLAYPIINQRVGNEAFGSILTIYTIITITSVVLGNTLNNIRLINMNLYKSNHYYWKFVSILLISILIESIALIIVFLYFFNLNTIDIIFLILLNILMCLRIYLNVFFRMTLKYNQILYIALIQFLGLLIGLFLYYLIQNWIVCFITSELFATIYTLVKLRGLTIGEYQSEDNNVVKDYVMLLSTNSLNNLNLYLDRLILLPIIGGTAVTISFLSTFIGKMLATFLYPINNVVLSYISVNESDNIKKQYLKTNLFAIAALCLVMIICYPITLIIVSLLYNIDSSLYSKFIILGNIGVLFNAVSIMIQTLNTKHASITLQANYMTLHTITFIFITILMTIAFGLNGFFWTTLFSNIIKYVILNIIGLKSKFINKKDVD
>CP022904.1|AXJ62945.1|171603_171807_-|hypothetical-protein
MDKESVVASLARNKKIAVETMAGQRYIIERILHTNDEKHIHILKPKDVVLDVDSIKEIDENHLNDAT
>CP022904.1|AXJ62946.1|171985_172498_+|hypothetical-protein
MTLFLLEANNLDFASTKEELEAKAASLSTKTIPTLIEVQATENLTHGYFIVEANDEAEAKQFLTEADISIQLVKEVRLVGKDLDEVKNGDAHVDYLVTWNIPEGITMDQYLARKKKNSVHYEEVPEVEFKRTYVCEDMSKCICLYNAPDEEAVRRARKAVDTPIDGIEKL
>CP022904.1|AXJ62947.1|172839_173580_+|Bicarbonate-transport-ATP-binding-protein-CmpD
MIKIQQLQHHFGSHKVIHNFNLDISKGEIVTFIGKSGCGKSTLLNVIGGFIHPSSGRVIIDNEIKQQPSPDCLMLFQHHNLLPWKTINDNIRIGFQQKISDEEINAQLKLVDLEDRGKHFPEQLSGGMKQRVALCRAHVHKPNVILMDEPLGALDAFTRYKLQDQLVQLKHKTQSTIILVTHDIDEAIYLSDRIVLLGEGCNIISQYEITASHPRSRNDSHLLKIRNEIMETFALNHHQVEPEYYL
>CP022904.1|AXJ62948.1|173593_174565_+|Bicarbonate-transport-ATP-binding-protein-CmpC
MKRLSIIVIIGIFIITGCDWQRTSKEPSKNAQNQQVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGMHLNEFNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEMSPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQSRDVLTQSAAWTSYGDLTIKPSGYQEITTLVKQHHLFNPPAYDDFVEPSLYKEASRS
>CP022904.1|AXJ62949.1|174561_175323_+|Putative-aliphatic-sulfonates-transport-permease-protein-SsuC
MTRPTNNKFILPIITFIIFLGIWEMVIIIGHYQPVLLPGPALVGKSIWTFIVTGEIFQHLAISLWRFVAGFVVALLVAIPLGFLLGRNRWLYNTIEPLFQLIRPISPIAWAPFVVLWFGIGSLPAIAIIFIAAFFPIVFNTIKGVRDIEPQYLKIAANLNLTGWSLYRNILFPGAFKQIMAGIHMAVGTSWIFLVSGEMIGAQSGLGFLIVDARNMLNLEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE
>CP022904.1|AXJ62950.1|175332_176367_+|hypothetical-protein
MMTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEAALRKNAEVIEAVSQSCLTTGFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTYVDGQLVVSGRMPAVSNIQEDHYFGAISKHESSDEFVMFILRANQDGITLVEKTNFLGVNGSATYQITLNQVVVPQSQIITHDAKQFAATIRPQFIAYQIPIGLGSIKSSLELIDAFSNAQNGINQYLEYDVEAFKKRYRQLREEYYAILDDGNLTSHLSELISLKKDIGYLLLDVNQASVVNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG
>CP022904.1|AXJ62951.1|176583_176943_+|hypothetical-protein
MNTIDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDKRNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
>CP022904.1|AXJ62952.1|176966_178142_+|Formate-dehydrogenase
MLFANFALNLTIIQGGGMSNGAVFFVIFLKQATCNTYFKEVKIYHLGEMDMKIVALFPEAVEGQENQLLNTKKAIGLKTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGVGSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQVGNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVSSSDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAGDVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDIIVASGRIASKSYTAK
>CP022904.1|AXJ62953.1|178527_179778_+|putative-transporter
MKRLSTTLKVRLISNFLQLIITTAFIPFIALYLTDMLSQSIVGIYLVGLVVLKFPLSIISGYLIEIFPKKLLVLIYQATMVIMLVFMGVFGSHQLWQIIGFCVAYAIFTIVWGLQFPVMDTLIMDAITEDVEHYIYKISYWMTNLSVAIGALLGGLMYGYSMLLLFLIAACIFLIVLFILYIWLPQDRNQVKQSDDKRHASRYQKLQIMNIFRSYKLVLKDRNYMLLISGFSIIMMGEFSISSYIAIRLKDQFETISIGSYDITGAKMLAILLMINTVVVILLTYSISKVVLKIDFKKALITGLLIYIVGYSGLTYLNQFGLLVVFMIIATVGEIIYSPIVSEQRFKIIPKAKRGTYSAVNALGIHFSETLARLGIVLGVFLTSLQMGLYMFIVLTIGASMLVAGVFGGQKQVNTN
>CP022904.1|AXJ62954.1|180224_187400_+|Gramicidin-S-synthase-2
MIMGNLRFQQEYFRIYKNNTESTTHRNAYWVKLAKNVEATKMMYALSTIVQQHASIRHFFDVTTDDNLTMILHEFLPFIEIKQVPSSSANYDLEAFFKQELSTYHFNDSPLFKVKLFQFADAAYILLDFHVSIFDDSQIDIFLDDLCNAYRGNTVINNTRQHAHINRNDDKDNQDASHIALDSNYFRLENNSDIHIDSYFPIKHPFEQALYQTYLIDDMTSIDMASLAVSVYLANHIMSQQHDVTLGIHVPSHLPNDLHGNIVPLTLTIDAKDVCQRFTTDFNKCVLQNMSQLQCAKSSLSLETIFHCYHHMMSCCNDVIEDVHQIHDAHTSLADIEIFPHQHGFKIIYNSAAYDLLSIETLSDLVRNIYLQITEENGNKRTTVDELNLMTERDIQLYDDINLSLPEIDDAQTVVTLFEQQVEATPNHVAVQFDGVFITYQTLNARANDLAHRLRNQYGVEPNDRVAVIAEKSIEMIIAMIGVLKAGGAYVPIDPNYPSDRQEYILKDATPKVVITYQALYENGKQNINHIDLNKIAWKNIDNLSKCNTLEDHAYVIYTSGTTGNPKGTLIPHRGIVRLVHRNHYVPLNEETTILLSGTIAFDAATFEIYGALLNGGKLIVAKKEQLLNPIAVEQLINENDVNTMWLTSSLFNQIASERIEVLVPLKYLLIGGEVLNAKWVDLLNQKPKHPQIINGYGPTENTTFTTTYNIPNKVPNRIPIGKPILGTHVYIMQGERRCGVGIPGELCTSGFGLAAGYLNQPELTADKFIKDSNINQLMYRSGDIVRLLPDGNIDYLYRKDKQVKIRGFRIELSEVEHALERIQGINKAVVIVQNHDQDQYIVAYYEAMHTLSHNKIKSQLRMTLPEYMIPVNFMHIEQIPITINGKLDKKALPIMDYVDTDAYVAPSTDTEHLLCQIFADILHVNQVGIHDNFFELGGHSLKATLVVNRIEASTGKRLQIGDLLQKPTVFELAQAIAKVQEQNYEVIPEAIVKDDYVLSSAQKRMYLLWKSNHKDTVYNVPFLWRLSSGLNVAQLQQAVQHLIARHEILRTQYIVVDDEVRQRIVADVVADFEEVNTHFTDEQEIMRQFVAPFNLEKPSQIRVRYIRSPLHAYLFIDTHHIINDGMSNIQLMNDLNALYQHKLLLPLKLQYKDYSEWMSHRDMTKHRQYWLSQFKDEVPILSLPTDYVRPNIKTTNGAMMSFTMNQQMRQLLQKYVEKHQITDFMFFMSVVMTLLSRYARKDDVVVGSVMSARMHKGTEQMLGMFANTLVYRGQPSPDKMWTQFLQEVKEMSLEAYEHQEYPFECLVNDLDQSHDASRNPLFDVMLVLQNNETNHAHFGHSKLTHIQPKSVTAKFDLSFIIEEDRDDYTINIEYNTDLYHSETVRHMGNQCMIMIDYILKHQDTLQICDIPNGTEELLNWVNTHVNDRMLNVPGNKSIISYFNEVVSRQGNHVALVMNDLTMTYETLRNYVDAIAHMLLSNGVGNGQRVALFTERSFEMIAAMLATVKVGASYIPIDIDFPNKRQGAILEDAKVTAVMSYGVEIETTLPVIQLENAKGFVESKENEQYDDLHGNQLENTAMLDNEMYAIYTSGTTGMPKGVAIRQRNLLNLVHAWSTELQLGDNEVFLQHANIVFDASVMEIYCCLLNGHTLVIPDREERVNPEQLQQLINKHRVTVASIPLQMCSIMEDFYIEKLITGGATSTASFVKYIEKHCGTYFNAYGPSESTVITSYWSHHCGDLIPETIPIGKPLSNIQVYIMSDGLLCGIGMPGELCIAGDSLAIGYINRPELMADKWQNNPFGKGKLYHSGDLARYTSDGQIEFLGRIDKQVKVNGYRIELDEIENVILAIRGISDCVVTVSHFDTHDILNAYYVGEQQVEQDLKQYLNDQLPKYMIPKTITHIDCMPLTTNDKVDTTRLPNPSPIQQSNKVYSEPSNEIEQTFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVVSHLKRFGHHISMQTLYQYKTVRQIVNYMYQNQQSLVALPDNLSELQKIVMSRYNLGILEDSLSHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKEIELVSDESFNEILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNK

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Crispr_ID: CP022904_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP022904_2

275113-275191

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP022904_2

>merge|CP022904|2|275113-275191|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACACAGTAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGAGCCCCAACA

>CP022904|2|2|275113-275191|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACA	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG
TGCAAGTTGGCGGAGCCCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
CP022904.1\|AXJ63039.1\|281494_282502_+\|Biotin-synthase	unknown	unknown	gnl\|CDD\|235755
CP022904.1\|AXJ63042.1\|284308_284776_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377623
CP022904.1\|AXJ63040.1\|282479_283595_+\|8-amino-7-oxononanoate-synthase/2-amino-3-ketobutyrate-coenzyme-A-ligase	unknown	unknown	gnl\|CDD\|223234
CP022904.1\|AXJ63035.1\|275496_277260_+\|Putative-multidrug-export-ATP-binding/permease-protein	unknown	unknown	gnl\|CDD\|224055
CP022904.1\|AXJ63033.1\|272756_273899_-\|Glycerate-2-kinase	unknown	unknown	gnl\|CDD\|272872
CP022904.1\|AXJ63043.1\|284827_285805_-\|Gamma-hemolysin-component-B-precursor	unknown	unknown	gnl\|CDD\|273388
CP022904.1\|AXJ63028.1\|268410_269217_+\|Calcineurin-like-phosphoesterase-superfamily-domain-protein	unknown	unknown	gnl\|CDD\|163441
CP022904.1\|AXJ63025.1\|262529_264359_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372624
CP022904.1\|AXJ63029.1\|269279_269936_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227323
CP022904.1\|AXJ63027.1\|266715_268125_-\|D-serine/D-alanine/glycine-transporter	unknown	unknown	gnl\|CDD\|224038
CP022904.1\|AXJ63034.1\|274166_274553_+\|GtrA-like-protein	unknown	unknown	gnl\|CDD\|225155
CP022904.1\|AXJ63026.1\|264499_266578_-\|Sodium,-potassium,-lithium-and-rubidium/H(+)-antiporter	unknown	unknown	gnl\|CDD\|223104
CP022904.1\|AXJ63038.1\|280134_281493_+\|L-Lysine-8-amino-7-oxononanoate-aminotransferase	unknown	unknown	gnl\|CDD\|273109
CP022904.1\|AXJ63044.1\|285806_286754_-\|Gamma-hemolysin-component-C-precursor	unknown	unknown	gnl\|CDD\|369625
CP022904.1\|AXJ63037.1\|279470_280157_+\|ATP-dependent-dethiobiotin-synthetase-BioD-1	unknown	unknown	gnl\|CDD\|223210
CP022904.1\|AXJ63031.1\|270644_271856_-\|Bicyclomycin-resistance-protein	unknown	unknown	gnl\|CDD\|340878
CP022904.1\|AXJ63041.1\|283605_284298_+\|6-carboxyhexanoate--CoA-ligase	unknown	unknown	gnl\|CDD\|224342
CP022904.1\|AXJ63030.1\|270048_270522_+\|Bacterial-transcription-activator,-effector-binding-domain	unknown	unknown	gnl\|CDD\|226231
CP022904.1\|AXJ63036.1\|277284_279018_+\|putative-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
CP022904.1\|AXJ63032.1\|272037_272697_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP022904.1\|AXJ63039.1\|281494_282502_+\|Biotin-synthase	gnl\|CDD\|235755	PRK06256, PRK06256, biotin synthase; Validated.	0
CP022904.1\|AXJ63042.1\|284308_284776_+\|hypothetical-protein	gnl\|CDD\|377623	pfam06177, QueT, QueT transporter. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes, suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.	0.000903859
CP022904.1\|AXJ63040.1\|282479_283595_+\|8-amino-7-oxononanoate-synthase/2-amino-3-ketobutyrate-coenzyme-A-ligase	gnl\|CDD\|223234	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism].	1.12947e-139
CP022904.1\|AXJ63035.1\|275496_277260_+\|Putative-multidrug-export-ATP-binding/permease-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.20525e-146
CP022904.1\|AXJ63033.1\|272756_273899_-\|Glycerate-2-kinase	gnl\|CDD\|272872	TIGR00045, Glycerate_kinase, glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation. [Energy metabolism, Other].	0
CP022904.1\|AXJ63043.1\|284827_285805_-\|Gamma-hemolysin-component-B-precursor	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	5.50766e-128
CP022904.1\|AXJ63028.1\|268410_269217_+\|Calcineurin-like-phosphoesterase-superfamily-domain-protein	gnl\|CDD\|163441	TIGR03729, acc_ester, putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.	4.17484e-107
CP022904.1\|AXJ63025.1\|262529_264359_+\|hypothetical-protein	gnl\|CDD\|372624	pfam13520, AA_permease_2, Amino acid permease.	2.50522e-32
CP022904.1\|AXJ63029.1\|269279_269936_-\|hypothetical-protein	gnl\|CDD\|227323	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown].	2.51069e-72
CP022904.1\|AXJ63027.1\|266715_268125_-\|D-serine/D-alanine/glycine-transporter	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
CP022904.1\|AXJ63034.1\|274166_274553_+\|GtrA-like-protein	gnl\|CDD\|225155	COG2246, COG2246, Predicted membrane protein [Function unknown].	1.41026e-22
CP022904.1\|AXJ63026.1\|264499_266578_-\|Sodium,-potassium,-lithium-and-rubidium/H(+)-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	2.12682e-103
CP022904.1\|AXJ63038.1\|280134_281493_+\|L-Lysine-8-amino-7-oxononanoate-aminotransferase	gnl\|CDD\|273109	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	0
CP022904.1\|AXJ63044.1\|285806_286754_-\|Gamma-hemolysin-component-C-precursor	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	6.83979e-93
CP022904.1\|AXJ63037.1\|279470_280157_+\|ATP-dependent-dethiobiotin-synthetase-BioD-1	gnl\|CDD\|223210	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism].	6.55734e-71
CP022904.1\|AXJ63031.1\|270644_271856_-\|Bicyclomycin-resistance-protein	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.81144e-73
CP022904.1\|AXJ63041.1\|283605_284298_+\|6-carboxyhexanoate--CoA-ligase	gnl\|CDD\|224342	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism].	1.03044e-132
CP022904.1\|AXJ63030.1\|270048_270522_+\|Bacterial-transcription-activator,-effector-binding-domain	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	1.52828e-37
CP022904.1\|AXJ63036.1\|277284_279018_+\|putative-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.69317e-142

>CP022904.1|AXJ63034.1|274166_274553_+|GtrA-like-protein
MKLTQTHAEILKFIIVGGINTLNYYVVYLLLLKLLHIEYMISHITGFLVAFVISYYLNCYFVYRVKPTWRKFISFPITQIVNVSLQTVLLYVFVSWLNLPAEIAPFAGLVITIPITFVLSKWILKDSN
>CP022904.1|AXJ63033.1|272756_273899_-|Glycerate-2-kinase
MQLQKIVIAPDSFKESMTAQQVGNIIKQAFTNVYGNTLHYDIIPMADGGEGTTDALMHATGATKYTVIVNDPLMRPIEACYARADEQQIAIIEMAAASGLDLLEKEERNPLYTSSYGTGELIKDALNHGAKTIILGIGGSATNDGGTGMLSALGVKFTDVNGDLLQMNGANLAHIAQIDITNLDSRLKEVTFKVACDVSNPLLGENGATYIYGPQKGADAKMIPKLDFAMSHYHDKIKMCTGKSVNQIPGSGAAGGMGAALLAFCETTLTKGIDVVFDITDFHQRIKDADLVITGEGRMDYQTIFGKTPVGVALAAKQYHIPVIAICGSLGENYQHVYDFGIDSAYSIISSPSTLEDVLQNSEQNLLNTATDIARILKLQ
>CP022904.1|AXJ63032.1|272037_272697_-|hypothetical-protein
MKRTDKYRDSYQYDNQNQNHRRQSEDASYRQQYAKGDPEEHPERYYNGRDYRREQILEEENEKSRRSKKWLYIIIAILLIIVAIFVTRALLNNDSDKVSNDPKVSQNYKKQVENQDGQINQQVDNAKENIKNNQKTDDIIKNLQNQIDNLKQQEQNKVDSKLTQFYQDQINKLTEANNALKNNASQGKIESMLNDINTKFDSIKSKLESLFKDDNGGAN
>CP022904.1|AXJ63031.1|270644_271856_-|Bicyclomycin-resistance-protein
MQSTKTKTKHFSFLLLITLGVMTAFGPLTIDMYVPSLPKVQGDFGSTTSEIQLTLSFTMIGLALGQFIFGPLSDAFGRKRIAVSILIIFILVSGLSMFVDQLPLFLTLRFIQGLTGGGVIVIAKASAGDKFSGNALAKFLASLMVVNGIITILAPLAGGLALSVATWRSIFTILTIVALIILIGVASQLPKTSKDELKQVNFSSVIKDFGSLLKKPAFIIPMLLQGLTYVMLFSYSSASPFITQKLYNMTPQQFSIMFAVNGVGLIIVSQVVALLVEKLHRHILLIILTIIQVVGVALIILTLTFHLPLWVLLIAFFLNVCPVTSIGPLGFTMAMEERTGGSGNASSLLGLFQFILGGAVAPLVGLKGEFNTSPYMIIIFITAILLVSLQIIYFKMIKKQHVA
>CP022904.1|AXJ63030.1|270048_270522_+|Bacterial-transcription-activator,-effector-binding-domain
MEYQLQQLASLTLVGIKETYENGRQAQQHIAGFWQRCYQEGVIADLQLKNNGDLAGILGLCIPELDGKMSYMIAVTGDNSADIAKYDIITLASSKYMVFEAQGAVPKAVQQKMEEVHHYIHQYQANTVKSAPFFELYQDGDTTSEKYITEIWMPVKG
>CP022904.1|AXJ63029.1|269279_269936_-|hypothetical-protein
MNRKILPVKPISQLFPIPMVMGCEGVSAAMMLQYNNQHIPATEIMRHWPTHPNNPHKGYVGHHLFIKLGNYHQTIFPEAYVPFLQKYNPNIVDGTGKSLEDLKGIIDQGQPVLIYHTNLGSKPLLRVFRFDNKPAKQVSNIHVTLLIGYDDYYYYYIDPLWSHIRRGLVLPAIIPNRKQIIKIRKEKMEYSFNSPGRKCIYVQPHSYTIENQQQNKHT
>CP022904.1|AXJ63028.1|268410_269217_+|Calcineurin-like-phosphoesterase-superfamily-domain-protein
MKIGTIADLHIDRHNKKTSEDYLEALVEIVKYKKLDILLIAGDISNHYQLTHQFITQLTKQLDIPVKFVPGNHDLWEVESMTTQDIWNNYKSMSQCLVGKPFIVNEEWAIIGHTGWYDYSFAAQRFSLEHLQKGKHYGATWQDKERISWGISDQNLSKIAAEQVKKDILEVGNRRVILVTHVVTHPDFIVPMPHRIFDFYNAFIGTSDFNPLYAMFDIPYSIMGHVHFRKSVMDDGRCYLCPCLGYPRQWRSEDIYQEINETIQIIEI
>CP022904.1|AXJ63027.1|266715_268125_-|D-serine/D-alanine/glycine-transporter
MARKLHRELNNRHIQLIAIGGAIGTGLFLGSGQTISLTGPSLLFTYMIIGVVLFAFMRALGELLLSNTRFNSFVDIANEYLGPFGGFVIGWTYWLCWIVSSMSDLTAMGQYFAFWYPQVPNWITVLFIVLILISFNLLGARLFGELEFWFSIIKVVTIIAMVIVGLVLIFFSFKTHYGHASFTNLISHGGMFPGGTFGFLMSFQIAVYSFIGIELIGVTAGETKDPEKTLPKAINNVPIRILLFYIGGLLVIMSVIPWNDIDPNSSPFVKLFTLIGVPFAAGVVNFVVLTAAASATNSGIYSNSRILFGLSQQGLGPKVLNKTNSHGVPYLSMLVSSIALLIAALLNYIFPNAIQLFIYVTTLSTVLFLVVWAMIIVAYLMYLKKHPEAHKNSKFKLIGGKPIAYIILAFFFFVFILLFFSDETRAAIYISPFWFIFLFFFYKKYKTNAEKLAYEQRQNDSGHFRYDNQ
>CP022904.1|AXJ63026.1|264499_266578_-|Sodium,-potassium,-lithium-and-rubidium/H(+)-antiporter
MALLEAFLIFIFAVIISSVINNRFPQIPTAFIQIALGVVIFIIPIQVDFQFNSEVFMFAVIAPLLFVEGTHVSRTKLLEYRKPILLMSMALVFATVVGVGYFIHWIWPALPMPAAFAIAAILCPTDAVAVSAITRGKLLPKGSMTILEGESLLNDAAGIISFKIAVTALVTGTFSLFQAVEQFIISTILGVLIGAIIGFVVVRIRIDLTANKGLKDNNTLTFIQLLTPFVVYFLAEEVHASGIIAVVIAGLIHGLERDRLIRAQTELQMNYHQIWNTFSYALNGFVFVVLGFMIPTVVIDIFQTEPDNFSFLIVITILIAIAIYACRFVWVYFWYKDFYFPKNIQSYLDEEHDSHETPPSRVRYAFIMTMCGIHGTISLSMALTLPFIITKGQAFEYRNDLLFIASFMVLISLILAQIVLPLITPSAEDTTFKGMTYQSAKIFIVQKVIQHFKNESKKDKNDTNYRPVLNQYYGELLFLLNSEPNNQNTKELKRLEDIAKVIETSTLERLIDKGKATYQDINNYRNIVELTETHRTASFVEKFANFFKMLWLRLKAMKHYKALNKESKKQEFENSFKDVQKIMRIVNHNIILRLKEEQNSTNVLEVSLVINHYYDMSRSLKWRAQRRKERQENSNQIIPQAMFHNHKLEALYLQRHLLDELIRKNKINNIVAAQIRENINYNEIVLSLQSKH
>CP022904.1|AXJ63025.1|262529_264359_+|hypothetical-protein
MFNQFKRLIIGQPKKNRELKDEKISKFKGLAILSSDALSSVAYGPEQILITLSVVGAVATWYTLPIAGAVLILLAALIMSYRQIIYAYPKGGGAYMVSKTNLGEKWGLLAGGSLLVDYILTVAVSISSGADAFVAAFPSLYGHKVLIACLLVLFILILNLRGLTESATVLSYPVYLFIIGLVILIFIGTFRVATGDIQPHMHASVGTAVPGVTLFLLLKAFSSGASSLTGVEAISNAVTNFREPSANNAVKTLIAMGSILAFLLVGIVGLAYVYGIMPQTETTVLSQLAMQIFGDNAAFYFVQATTVMILVLAANTGFTAFPMLAASMSKDKYMPRMFTVRGDRLGYSNSIIILGVLAIILIIVFDGMTEDLIPLYAVGVFIPFTLAQFGMVIKWIHERPKNWLSKLSVNLLGGIVTFIVFMILLITKFSQVWPILIFLPFVVIFFLKINKHYRDIAEQLRSDIDVLNVDVVDRNLAIVPITSITTAVDKSIYYAQMLANNDVIAVHVSFGDEDEKAFQEKWKRHFPDVRLVILHSEYRSIIRPISRFIDKINRKANDQNYMITVVIPEFITKKRWHNLLHNQTSLRMKLYLIYQKNVNVCTIPFKLKK
>CP022904.1|AXJ63035.1|275496_277260_+|Putative-multidrug-export-ATP-binding/permease-protein
MNNQTNWIKILSGFASDSKWKIMLSILLSIISVFSGLVPYWAVFKIILMMINNAYTINSIMVYIFIALITYISQVCCFGASTMLSHITAYEILSEIRKKLAQKLMRLPLGVVESKKIGELKNIFVDKVETIELPLAHMIPEVIGNLLLSAAIFLYIMLIDWRMASALLVTIPISIFAFKKVMSGFNETYAEQMKSNNYMNSAIVEFIEGIEVIKTFNQSQSSYKKYKDAVDNYKIHTLNWFKNTWGYMNLGASVLPSTFLGILPVGMYLISINQLNYAEFFLCIVLSLGVVAPIKNFTNYVNHLKSIQYALTEVNQILSLEELVLSTKFKKPQHYEIAFNNVGFSYNKDKDDLVFKHLSFTVPENNFTAIVGASGSGKSTIAKLISRYWDVTSGEITIGGINIKDIESKQLNDLVGFVGQDNFLLNLTFKENIKLGNPEATDEAVEKAAKLAQCHEFIEKLPDGYDTNVGTVGDKLSGGEKQRVTIARMILKDAPIIVLDEATAYVDPDNEQKIQEALNVLTQDKTLIVIAHRLSTIQHADQIIVLGKQQILEKGSHHLLLKLNGNYKKMWDTHMHTKDWGINTGHN
>CP022904.1|AXJ63036.1|277284_279018_+|putative-ABC-transporter-ATP-binding-protein
MFQITFKILNWIRPYKARMILGFSMSFLNAIFIALPIFLAAKIFNNVLSHKPIYMKDILNVVIIMVLLVIGRFITAYFKSKSHESIAYEMSAKERLDIGDKLKNVRLGYFNSHHSNELTTIVTTDLTFLENFAMKMVDIIVNGYILITVLILSLLVVSWQVSLLACIGVLLSFFAIQLLERKSRQNAPAYHNVQNQLVEKVLEVIRGIQVIKSFAKENTSLKSFNQAVNESKRINTKIEMQYIPFNLLHLLSLKVVSIMIVLVACLLYMNHSIDLPTLIMISIFSFVIFDSVENINSAAHVLEMIDMTIDDIEKIKNAPELDENGKNLTIKNENIAFQNVNFSYDDKQVIKNVNFEIPTQTSTAIIGPSGSGKSTLCHLLLRFYDIDDGNIRIDGVDIKDMTLSTLMSKISAVFQKVYLFNDTIENNILFGNPGATKEEIIRAAKQACCHDFIMSLPEGYQTMLNEKGSNLSGGEKQRISIARAILKDAPIIILDEATASIDPENEQLIQTAINELSKGKTVITIAHKLETIKNADQIIVLNEGEIIQKGSHDELIRKPGMYQDFIRIKSKSAGWKL
>CP022904.1|AXJ63037.1|279470_280157_+|ATP-dependent-dethiobiotin-synthetase-BioD-1
MRIFITSTNTDVGKTYVTKHLYHALKTRGHRVCVFKPFQTEERQDGTFPDLEVFKNECDLSYDITSLYTFKQPVSPHLAFKMTDQIFLNKQRVLDKVKVLDKEFDFILIEGAGGIAVPIYEGTDDFYMTKDLINDCADCVISVLPSKLGAISDAVVHQDYVNKNVSASNFLIMNRYTDSYIEKDNQITIGKLTNKTVYTFEEHATYENFSEAFLKQLIGVKNELHTTT
>CP022904.1|AXJ63038.1|280134_281493_+|L-Lysine-8-amino-7-oxononanoate-aminotransferase
MNYTQQLKQKDSEYVWHPFTQMGVYSKEEAIIIEKGKGSYLYDTNGNKYLDGYASLWVNVHGHNNKYLNKVIKKQLNKIAHSTLLGSSNIPSIELAEKLIEITPSNLRKVFYSDTGSASVEIAIKMAYQYWKNIDREKYAKKNKFITLNHGYHGDTIGAVSVGGIKTFHKIFKDLIFENIQVESPSFYRSNYDTENEIMTAILTNIEQILIERNDEIAGFILEPLIQGATGLFVHPKGFLKEVEKLCKKYDVLLICDEVAVGFGRTGKMFACNHEDVQPDIMCLGKAITGGYLPLAATLTSQKIYNTFLSDSHGVNTFFHGHTYTGNQIVCTVALENIRLYEKRKLLSHIETTSSTLEKQLHALKRHRNVGDVRGRGLMFGVELVTDKDSKTPLEIEKVERIVRKCKENGLMIRNLENVITFVPVLSMSNKEVKTMVRIFKKAVHNILDRKC
>CP022904.1|AXJ63039.1|281494_282502_+|Biotin-synthase
MNLAKRILQGEQLTKETVLKIYEDTNIDTLDLLNEAYILRKHYFGKKVKLNMILNAKSGICPENCGYCGQSRDIKQKQRYALIPEEQIIDGAKVAHDNHIGTYCIVMSGRGPSDKEVDHISNTVRTIKSQHPQLKICACLGLTNDEQAKKLKSAGVDRYNHNINTSENYHDNVVTTHSYKDRTDTIELMKANNISPCSGVICGMGESNQDIVDMAFALKEMDADSIPINFLHPIKGTKFGSMDDLTPMKCLRIVALFRLINPTKEIRIAGGREVNLRSLQPLALKAANSIFVGDYLITGGQPNQLDYDMINDLGFEIDYDTCENKENKNDVSRAN
>CP022904.1|AXJ63040.1|282479_283595_+|8-amino-7-oxononanoate-synthase/2-amino-3-ketobutyrate-coenzyme-A-ligase
MMFQEQIDLLQQKGLYRSLKSVGYIDRQYIEVENKRCTNYTSNDYLGLGQIAFDKDDFERFMRKYSYHLSSSRLISGSSTAYEEIETMLAGWLGYSACTILNSGYDANLALFNIFKNTNCVVFSDQENHASIIDGIKLSGLEKVIYKHLDIADLEKRLEKYPNQNIPKIIISDSVFSTNGDVVDIGQLVSLKHKYNATLILDVSHSFGIENYSNYQGVDILTSSLSKACGAYGGVILSSNDVKDMLINHGRPLIYSSSLPIYNLYFIKRNIEKLINADDRRTKLNSLSKYFNQKLKALNVNYNSSNSPIKFIEFDDIEAAENIHQTLLKHHVFTSYLRYPTVTKPMLRISLSYFHTEQDIDRLFEILHQED
>CP022904.1|AXJ63041.1|283605_284298_+|6-carboxyhexanoate--CoA-ligase
MYSIKMRSSNQDVHISGAETICEFDKIEQTVQRFYNKGFFHENGQPDFLNIKIQKIMEPIQQIKALQIIEDDKANLQHLTQECGVTEQALNQGMTYIKNETVYTGAIILSAISGKRLDSFGQRGIRATHFSFEDINNKGDLNERVTDALAIASCINAHPYVKGELCVSDDLTYTTGYFAAAKIGYHRLFDIKPVNTRYGGRIIFVDDCIDLNHYISFLESTPKQVVYETV
>CP022904.1|AXJ63042.1|284308_284776_+|hypothetical-protein
MTSKDITQISVIAAILTILAVLKIPSIIPGLDFQLSAPAALLILAFFGIKKYFLGGLLSSVLLLIFGVFNPINVIISIIFRVIAIAVVYLLKINVLSLVLSSVLGSLVSRLLLSIILNLPVWVVLLNAIPGVIFTLIVAIPLYLTLRKRMAVLLR
>CP022904.1|AXJ63043.1|284827_285805_-|Gamma-hemolysin-component-B-precursor
MKMNKLVKSSVATSMALLLLSGTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTFKSTYEIDWENHKVKLLDTKETENNK
>CP022904.1|AXJ63044.1|285806_286754_-|Gamma-hemolysin-component-C-precursor
MLKNKILATTLSVSLLALLANPLLENAKAANDTEDIGKGSDIEIIKRTEDKTSNKWGVTQNIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQNSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPSFIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRVHNAFVNRNYTVKYEVNWKTHEIKVKGQN

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Crispr_ID: CP022904_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP022904_3

439859-439939

Orphan

Consensus_repeat	Method
CAAGTTGGCGGGGCCCCAACACAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP022904_3

>merge|CP022904|3|439859-439939|CRISPRCasFinder
CAAGTTGGCGGGGCCCCAACACAGAAGCTGACAGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGA

>CP022904|3|3|439859-439939|CRISPRCasFinder
CAAGTTGGCGGGGCCCCAACACAGA	AGCTGACAGAAAGTCAGCTTACAATAATGTG
CAAGTTGGCGGGGCCCCAACATAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP022904.1\|AXJ63186.1\|434561_435068_+\|Molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|223595
CP022904.1\|AXJ63203.1\|449537_450446_+\|Membrane-transport-protein	unknown	unknown	gnl\|CDD\|223751
CP022904.1\|AXJ63187.1\|435069_435564_-\|Cyclic-pyranopterin-monophosphate-synthase-accessory-protein	unknown	unknown	gnl\|CDD\|236483
CP022904.1\|AXJ63197.1\|442549_443314_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379203
CP022904.1\|AXJ63194.1\|440291_440642_+\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
CP022904.1\|AXJ63189.1\|436882_437368_+\|Molybdopterin-guanine-dinucleotide-biosynthesis-adapter-protein	unknown	unknown	gnl\|CDD\|224677
CP022904.1\|AXJ63200.1\|445327_448495_+\|Swarming-motility-protein-SwrC	unknown	unknown	gnl\|CDD\|223911
CP022904.1\|AXJ63192.1\|438073_438673_+\|putative-molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234725
CP022904.1\|AXJ63202.1\|449240_449405_-\|hypothetical-protein	unknown	unknown	unknown
CP022904.1\|AXJ63199.1\|443945_445211_+\|Lipid-II:glycine-glycyltransferase	unknown	unknown	gnl\|CDD\|225224
CP022904.1\|AXJ63193.1\|438692_439715_+\|Cyclic-pyranopterin-monophosphate-synthase	unknown	unknown	gnl\|CDD\|274250
CP022904.1\|AXJ63184.1\|432751_433357_+\|Sulfate/thiosulfate-import-ATP-binding-protein-CysA	unknown	unknown	gnl\|CDD\|226628
CP022904.1\|AXJ63188.1\|435626_436886_+\|Molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|238452
CP022904.1\|AXJ63201.1\|448678_448996_-\|hypothetical-protein	unknown	unknown	unknown
CP022904.1\|AXJ63196.1\|441947_442388_-\|putative-HTH-type-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP022904.1\|AXJ63190.1\|437381_437828_+\|Molybdopterin-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|223391
CP022904.1\|AXJ63191.1\|437833_438067_+\|Molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|340452
CP022904.1\|AXJ63198.1\|443305_443557_-\|hypothetical-protein	unknown	unknown	unknown
CP022904.1\|AXJ63185.1\|433526_434531_+\|Molybdopterin-synthase-adenylyltransferase	unknown	unknown	gnl\|CDD\|181084
CP022904.1\|AXJ63195.1\|440743_441955_-\|major-facilitator-superfamily-transporter	unknown	unknown	gnl\|CDD\|341042

Protein	Function_ID	Function_description	E-value
CP022904.1\|AXJ63186.1\|434561_435068_+\|Molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	2.42221e-64
CP022904.1\|AXJ63203.1\|449537_450446_+\|Membrane-transport-protein	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	7.28102e-43
CP022904.1\|AXJ63187.1\|435069_435564_-\|Cyclic-pyranopterin-monophosphate-synthase-accessory-protein	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	2.93711e-97
CP022904.1\|AXJ63197.1\|442549_443314_+\|hypothetical-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.50083e-38
CP022904.1\|AXJ63194.1\|440291_440642_+\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
CP022904.1\|AXJ63189.1\|436882_437368_+\|Molybdopterin-guanine-dinucleotide-biosynthesis-adapter-protein	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	9.59347e-51
CP022904.1\|AXJ63200.1\|445327_448495_+\|Swarming-motility-protein-SwrC	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
CP022904.1\|AXJ63192.1\|438073_438673_+\|putative-molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	2.15389e-66
CP022904.1\|AXJ63199.1\|443945_445211_+\|Lipid-II:glycine-glycyltransferase	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	1.81413e-143
CP022904.1\|AXJ63193.1\|438692_439715_+\|Cyclic-pyranopterin-monophosphate-synthase	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.0538e-165
CP022904.1\|AXJ63184.1\|432751_433357_+\|Sulfate/thiosulfate-import-ATP-binding-protein-CysA	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	1.78595e-116
CP022904.1\|AXJ63188.1\|435626_436886_+\|Molybdopterin-molybdenumtransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	4.50966e-159
CP022904.1\|AXJ63196.1\|441947_442388_-\|putative-HTH-type-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.35323e-15
CP022904.1\|AXJ63190.1\|437381_437828_+\|Molybdopterin-synthase-catalytic-subunit	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	6.99133e-58
CP022904.1\|AXJ63191.1\|437833_438067_+\|Molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	8.16473e-25
CP022904.1\|AXJ63185.1\|433526_434531_+\|Molybdopterin-synthase-adenylyltransferase	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	6.83722e-133
CP022904.1\|AXJ63195.1\|440743_441955_-\|major-facilitator-superfamily-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.92881e-73

>CP022904.1|AXJ63193.1|438692_439715_+|Cyclic-pyranopterin-monophosphate-synthase
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>CP022904.1|AXJ63192.1|438073_438673_+|putative-molybdenum-cofactor-guanylyltransferase
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNIYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>CP022904.1|AXJ63191.1|437833_438067_+|Molybdopterin-synthase-sulfur-carrier-subunit
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>CP022904.1|AXJ63190.1|437381_437828_+|Molybdopterin-synthase-catalytic-subunit
MKQFEIVIEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>CP022904.1|AXJ63189.1|436882_437368_+|Molybdopterin-guanine-dinucleotide-biosynthesis-adapter-protein
MILQIVGYKKSGKTTLMRHIVSFLKTHGYTVATIKHHGHAKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRDEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>CP022904.1|AXJ63188.1|435626_436886_+|Molybdopterin-molybdenumtransferase
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETKTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQKDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>CP022904.1|AXJ63187.1|435069_435564_-|Cyclic-pyranopterin-monophosphate-synthase-accessory-protein
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIFKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQSGQ
>CP022904.1|AXJ63186.1|434561_435068_+|Molybdenum-cofactor-biosynthesis-protein-B
MGEHQNVKLNRTVKAAVLTVSDTRDFVTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>CP022904.1|AXJ63185.1|433526_434531_+|Molybdopterin-synthase-adenylyltransferase
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDGCIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSDCTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>CP022904.1|AXJ63184.1|432751_433357_+|Sulfate/thiosulfate-import-ATP-binding-protein-CysA
MLKINVKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTTKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSKHIDQLIQTLNINHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG
>CP022904.1|AXJ63194.1|440291_440642_+|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>CP022904.1|AXJ63195.1|440743_441955_-|major-facilitator-superfamily-transporter
MTNQGSLNKSPIFTKSFTINFFVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETDVINKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>CP022904.1|AXJ63196.1|441947_442388_-|putative-HTH-type-transcriptional-regulator
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>CP022904.1|AXJ63197.1|442549_443314_+|hypothetical-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>CP022904.1|AXJ63198.1|443305_443557_-|hypothetical-protein
MRTIILSLFIIMNIVAIIMTLSQPLTVNYFSLRVILIFFTFILSIFFILIKSSRLNNILTILSIVLVIIHMGILAHSTYVYLY
>CP022904.1|AXJ63199.1|443945_445211_+|Lipid-II:glycine-glycyltransferase
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYILNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>CP022904.1|AXJ63200.1|445327_448495_+|Swarming-motility-protein-SwrC
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASAPNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHVDGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>CP022904.1|AXJ63201.1|448678_448996_-|hypothetical-protein
MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLALTTMSFPKDNWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>CP022904.1|AXJ63202.1|449240_449405_-|hypothetical-protein
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>CP022904.1|AXJ63203.1|449537_450446_+|Membrane-transport-protein
MTEQFTMIILLIALGYFLKRINFIKATDSQVIATLVLNVTLPSLVIVNLNSAELKLSFSILPILMIIYGIVAKMIAVWFFRKYDNHMRGSVGMMTGAMNIGLFAYPLIEVIWPKTGLIYFGMADIGGAFVMFGITYFVGSYFSEGSDQFDFKYLGKKLLQSVPLVTYIVMFILNINHIHLPHVAIDFFSILSHANMPLSMILLGVMLNFTLERKYIPATIKYLCLHYGLALVAGLLVHVLLPVSDDMIKTTLLVTWMFPVGVAIISYGIQFKYRTLPFIGMTTNLTIIISIIILYVYQAVFV

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Crispr_ID: CP022904_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP022904_5

560222-560303

Orphan

Consensus_repeat	Method
AAGAAGCCCCTAACAACTAAAGTTG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP022904_5

>merge|CP022904|5|560222-560303|CRISPRCasFinder
AAGAAGCCCCTAACAACTAAAGTTGAAAAGTAGGAGCGCCTGCGCTAAGCGCATGCATAAGAGCCCCTAACAACTAAAGTTG

>CP022904|5|5|560222-560303|CRISPRCasFinder
AAGAAGCCCCTAACAACTAAAGTTG	AAAAGTAGGAGCGCCTGCGCTAAGCGCATGCA
TAAGAGCCCCTAACAACTAAAGTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP022904.1\|AXJ63295.1\|540840_548286_+\|Extracellular-matrix-binding-protein-ebh-precursor	unknown	unknown	gnl\|CDD\|275089
CP022904.1\|AXJ63293.1\|538248_539181_+\|YbbR-like-protein	unknown	unknown	gnl\|CDD\|227193
CP022904.1\|AXJ63305.1\|562655_562976_-\|HTH-type-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP022904.1\|AXJ63310.1\|567929_568343_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225556
CP022904.1\|AXJ63300.1\|554542_556348_+\|Glutamine--fructose-6-phosphate-aminotransferase-[isomerizing]	unknown	unknown	gnl\|CDD\|234729
CP022904.1\|AXJ63306.1\|563127_563793_+\|putative-sugar-epimerase-YhfK	unknown	unknown	gnl\|CDD\|187554
CP022904.1\|AXJ63307.1\|564228_565167_+\|putative-mannose-6-phosphate-isomerase-GmuF	unknown	unknown	gnl\|CDD\|224399
CP022904.1\|AXJ63303.1\|560319_561411_-\|hypothetical-protein	unknown	unknown	unknown
CP022904.1\|AXJ63296.1\|548604_549711_-\|Mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
CP022904.1\|AXJ63294.1\|539207_540563_+\|Phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
CP022904.1\|AXJ63298.1\|550156_552289_-\|Transcriptional-regulator-MtlR	unknown	unknown	gnl\|CDD\|226234
CP022904.1\|AXJ63302.1\|557429_558287_+\|Putative-phosphatase-YwpJ	unknown	unknown	gnl\|CDD\|223635
CP022904.1\|AXJ63309.1\|566099_567473_+\|EVE-domain-protein	unknown	unknown	gnl\|CDD\|376640
CP022904.1\|AXJ63304.1\|561676_562654_-\|Cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	unknown	unknown	gnl\|CDD\|224151
CP022904.1\|AXJ63312.1\|569106_569817_-\|Purine-nucleoside-phosphorylase-DeoD-type-1	unknown	unknown	gnl\|CDD\|180275
CP022904.1\|AXJ63311.1\|568542_568986_+\|General-stress-protein-20U	unknown	unknown	gnl\|CDD\|223854
CP022904.1\|AXJ63308.1\|565197_565428_+\|hypothetical-protein	unknown	unknown	unknown
CP022904.1\|AXJ63301.1\|556579_557362_+\|putative-ABC-transporter-ATP-binding-protein-YlmA	unknown	unknown	gnl\|CDD\|224044
CP022904.1\|AXJ63299.1\|552323_553862_-\|PTS-system-mannitol-specific-EIICB-component	unknown	unknown	gnl\|CDD\|225123
CP022904.1\|AXJ63297.1\|549710_550145_-\|Mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014

Protein	Function_ID	Function_description	E-value
CP022904.1\|AXJ63295.1\|540840_548286_+\|Extracellular-matrix-binding-protein-ebh-precursor	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	1.54008e-108
CP022904.1\|AXJ63293.1\|538248_539181_+\|YbbR-like-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	6.26423e-118
CP022904.1\|AXJ63305.1\|562655_562976_-\|HTH-type-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
CP022904.1\|AXJ63310.1\|567929_568343_+\|hypothetical-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
CP022904.1\|AXJ63300.1\|554542_556348_+\|Glutamine--fructose-6-phosphate-aminotransferase-[isomerizing]	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP022904.1\|AXJ63306.1\|563127_563793_+\|putative-sugar-epimerase-YhfK	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
CP022904.1\|AXJ63307.1\|564228_565167_+\|putative-mannose-6-phosphate-isomerase-GmuF	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
CP022904.1\|AXJ63294.1\|539207_540563_+\|Phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
CP022904.1\|AXJ63296.1\|548604_549711_-\|Mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
CP022904.1\|AXJ63302.1\|557429_558287_+\|Putative-phosphatase-YwpJ	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	6.8047e-59
CP022904.1\|AXJ63298.1\|550156_552289_-\|Transcriptional-regulator-MtlR	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.02509e-68
CP022904.1\|AXJ63312.1\|569106_569817_-\|Purine-nucleoside-phosphorylase-DeoD-type-1	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP022904.1\|AXJ63309.1\|566099_567473_+\|EVE-domain-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	4.11455e-06
CP022904.1\|AXJ63304.1\|561676_562654_-\|Cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.49165e-107
CP022904.1\|AXJ63311.1\|568542_568986_+\|General-stress-protein-20U	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
CP022904.1\|AXJ63301.1\|556579_557362_+\|putative-ABC-transporter-ATP-binding-protein-YlmA	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.29094e-106
CP022904.1\|AXJ63299.1\|552323_553862_-\|PTS-system-mannitol-specific-EIICB-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP022904.1\|AXJ63297.1\|549710_550145_-\|Mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62

>CP022904.1|AXJ63302.1|557429_558287_+|Putative-phosphatase-YwpJ
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>CP022904.1|AXJ63301.1|556579_557362_+|putative-ABC-transporter-ATP-binding-protein-YlmA
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATTGGVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEVRNEAHHLLKLVGISAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLNILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>CP022904.1|AXJ63300.1|554542_556348_+|Glutamine--fructose-6-phosphate-aminotransferase-[isomerizing]
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEVIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEDGTPVVALATQENVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP022904.1|AXJ63299.1|552323_553862_-|PTS-system-mannitol-specific-EIICB-component
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP022904.1|AXJ63298.1|550156_552289_-|Transcriptional-regulator-MtlR
MLLSTREKEMIALLIKYHSQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP022904.1|AXJ63297.1|549710_550145_-|Mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>CP022904.1|AXJ63296.1|548604_549711_-|Mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>CP022904.1|AXJ63295.1|540840_548286_+|Extracellular-matrix-binding-protein-ebh-precursor
MNLFRQQKFSIRKFNVGIFSALIATVTFISTNPTTASAAEQNQPAQNQPAQPADANTQPNANAGAQANPAAQPANQGGQANPAGGAAQPAGQGNQADPNNAAQAQPGNQAAPANQAGQGNNQATPNNNATPANQTQPANAPAAAQPAAPVAANAQTQDPNASNTGEGSINTTLTFDDPAISTDENRQDPTVTVTDKVNGYSLINNGKIGFVNSELRRSDMFDKNNPQNYQAKGNVAALGRVNANDSTDHGNFNGITKTVNVKPDSELIINFTTMQTNSKQGATNLVIKDAKKNTELATVNVAKTGTAHLFKVPTDADRLDLQFIPDNTAVADASRITTNKDGYKYYSFIDNVGLFSGSHLYVKNRDLAPKATNNKEYTINTEIGNNGNFGASLKADQFKYEVTLPQGVTYVNDSLTTTFPNGNEDSTVLKNMTVNYDQTANKVTFTSQGVTTARGTHTKEVLFPDKSLKLSYKVNVANIDTPKNIDFNEKLTYRTASDVVINNAQPEVTLTADPFSVAVEMNKDALQQQVNSQVDNSHYTTASIAEYNKLKQQADTILNEDANHVETANRASQADIDGLVTKLQAALIDNQAAIAELDTKAQEKVTAAQQSKKVTQDEVAALVTKINNDKNNAIAEINKQTTSQGVTTEKDNGIAVLEQDVITPTVKPQAKQDIIQAVTTRKQQIKKSNASLQDEKDVANDKIGKIETKAIKDIDAATTNAQVEAIKTKAINDINQTTPATTAKAAALEEFDEVVQAQIDQAPLNPDTTNEEVAEAIERINAAKVSGVKAIEATTTAQDLERVKNEEIFKIENITDSTQTKMDAYKEVRQAATARKAQNATVSNATDEEVAEANAAVDAAQTEGLHDIQVVKSQQEVADTKAKVLDKINAIQTQAKVKPAADTEVENAYNTRKQEIQNSNASTTEEKEAAYTELDAKKQEARTNLDAANTNSDVTTAKDNGIAAINQVQAATTKKSDAKAEIAQKASERKTAIEAMNDSTTEEQQAAKDKVDQAVVTANADIDNATANTDVDNAKTTNEATIAAITPDANVKPAAKQAIADKVQAQETAIDANNGSTTEEKEAAKQQVQTEKTAADAAIDAAHSNVEVEAAKNAEIAKIEAIQPATTTKDNAKQAIATKANERKTAIAQTQDITAEEIAAANADVDNAVTQANSNIEAANSQNDVDQAKTTGETSIDQVTPTVNKKATARNEITAILNNKLQEIQATPDATDEEKQAADAEANTENGKANQAISAATTNAQVDEAKANAEAAINAVTPKVVKKQAAKDEIDQLQATQTNVINNDQNATNEEKEAAIQQLATAVTDAKNNITAATDDNGVDTAKDAGKNSIQSTQPATAVKSNAKNEVDQAVTTQNQAIDNTTGATTEEKNAAKDLVLKAKEKAYQDILNAQTTNDVTQIKDQAVADIQGITADTTIKDVAKDELATKANEQKALIAQTADATTEEKEQANQQVDAQLTQGNQNIENAQSIDDVNTAKDNAIQAIDPIQASTDVKTNARAELLTEMQNKITEILNNNETTNEEKGNDIGPVRAAYEEGLNNINAATTTGDVTTAKDTAVQKVQQLHANPVKKPAGKKELDQAAADKKTQIEQTPNASQQEINDAKQEVDTELNQAKTNVDQSSTNEYVDNAVKEGKAKINAVKTFSEYKKDALAKIEDAYNAKVNEADNSNASTSSEIAEAKQKLAELKQTADQNVNQATSKDDIEVQIHNDLDNINDYTIPTGKKESATTDLYAYADQKKNNISADTNATQDEKQQAIKQVDQNVQTALENINNGVDNGDVDDALTQGKAAIDTIQVDATVKPKANQAIEAKAEDTKESIDHSDQLTAEEKTEALAMIKQITDQAKQGITDATTTAEVEKAKAQGLEAFDNIQIDSTEKQKAIEELETALDQIEAGVNVDADATTEEKEAFTNALEDILSKATEDISDQTTNAEIATVKNSALEQLKAQRINPVVKKNALEAIREVVNKQIEIIKNADADASAKEIARTDLGRYFDRFADKLDKTQTNTEVAELQNVTIPAIEAIVPQNDPDANDTNNGTDNNDATANSNANATPENTGQPNVSETTDNGKADASPTTPNNSDAATGETTVTSATDDAKDKPQANNNSSADASTNSPTMDNDVTSKPEVESTNNGTTDKPVTETDNATPAESTTNNNSTTTATNENAPTGSTATAPTTASTEAASSADSKDNASVNDSKQNAEVNNSAESQSTNGKVAQPKSENKAKAEKDGRDSTNQSMVESTTETLPSADITEPNVPSNTSKDKEESTTNQTDAGQLKSETNVASNEADKSPSKADTEVSNKPSTSASSEAKDKMTSTNVSQKDDTATADTNDTQKSVGPVANNKAKDMQTNDTQKSVGSAANNKATQNDGANASPATVSNGSHSMHQDMLNVTKPEENKANAKSDQQGKVNKPKQQAKTLPDTGMSHNDDLPYAELALGAGMAFLIRRFTKKDQQTEE
>CP022904.1|AXJ63294.1|539207_540563_+|Phosphoglucosamine-mutase
MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSDEQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIVLDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLAFDGDGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSELAGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAERFAQQIADVVQDKMGLDK
>CP022904.1|AXJ63293.1|538248_539181_+|YbbR-like-protein
MLESKWGLRFIAFLLALFFFLSVNNVFGNIFNTGNLGQKSSKTIQDVPVEILYNTKDLHLTKAPETVNVTISGPQSKIIKIENPEDLRVVIDLSNAKAGKYQEKYQVKGLADDIHYSVKPKLANITLENKVTKKMTVQPDVSQSDIDPLYKITKQEVSPQTVKVTGGEEQLNDIAYLKATFKTNKKINGDTKDVAEVTAFDKKLNKLNVSIQPNEVNLQVKVEPFSKKVKVNVKQKGSLADDKELSSIDLEDKEIEIFGSRDDLQNISEVDAEVDLDGISESTEKTVKINLPEHVTKAQPSETKAYINVK
>CP022904.1|AXJ63303.1|560319_561411_-|hypothetical-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP022904.1|AXJ63304.1|561676_562654_-|Cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter
MSHSHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>CP022904.1|AXJ63305.1|562655_562976_-|HTH-type-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP022904.1|AXJ63306.1|563127_563793_+|putative-sugar-epimerase-YhfK
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>CP022904.1|AXJ63307.1|564228_565167_+|putative-mannose-6-phosphate-isomerase-GmuF
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP022904.1|AXJ63308.1|565197_565428_+|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP022904.1|AXJ63309.1|566099_567473_+|EVE-domain-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVKKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP022904.1|AXJ63310.1|567929_568343_+|hypothetical-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP022904.1|AXJ63311.1|568542_568986_+|General-stress-protein-20U
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP022904.1|AXJ63312.1|569106_569817_-|Purine-nucleoside-phosphorylase-DeoD-type-1
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE

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Crispr_ID: CP022904_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP022904_6

1431488-1431572

Orphan

Consensus_repeat	Method
CACCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP022904_6

>merge|CP022904|6|1431488-1431572|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGCCTGTAGAA

>CP022904|6|6|1431488-1431572|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA
CACCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP022904.1\|AXJ64128.1\|1440372_1440942_-\|putative-nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|273101
CP022904.1\|AXJ64114.1\|1425142_1426282_-\|Chaperone-protein-DnaJ	unknown	unknown	gnl\|CDD\|237656
CP022904.1\|AXJ64119.1\|1431744_1433568_-\|Elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
CP022904.1\|AXJ64111.1\|1422093_1423440_-\|Threonylcarbamoyladenosine-tRNA-methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
CP022904.1\|AXJ64116.1\|1428318_1428945_-\|heat-shock-protein-GrpE	unknown	unknown	gnl\|CDD\|237622
CP022904.1\|AXJ64121.1\|1434209_1435184_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511
CP022904.1\|AXJ64113.1\|1424200_1425139_-\|Ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
CP022904.1\|AXJ64109.1\|1420697_1421405_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223961
CP022904.1\|AXJ64112.1\|1423446_1424199_-\|Ribosomal-RNA-small-subunit-methyltransferase-E	unknown	unknown	gnl\|CDD\|224303
CP022904.1\|AXJ64110.1\|1421624_1421801_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
CP022904.1\|AXJ64122.1\|1435240_1437442_-\|ComEC-family-competence-protein	unknown	unknown	gnl\|CDD\|225212
CP022904.1\|AXJ64124.1\|1437999_1438677_-\|ComE-operon-protein-1	unknown	unknown	gnl\|CDD\|224472
CP022904.1\|AXJ64115.1\|1426417_1428250_-\|Chaperone-protein-DnaK	unknown	unknown	gnl\|CDD\|234715
CP022904.1\|AXJ64117.1\|1428976_1429954_-\|Heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|273017
CP022904.1\|AXJ64126.1\|1439444_1439798_-\|Ribosomal-silencing-factor-RsfS	unknown	unknown	gnl\|CDD\|223870
CP022904.1\|AXJ64127.1\|1439798_1440383_-\|putative-nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|224627
CP022904.1\|AXJ64118.1\|1430054_1431212_-\|Oxygen-independent-coproporphyrinogen-III-oxidase-1	unknown	unknown	gnl\|CDD\|236309
CP022904.1\|AXJ64125.1\|1438725_1439442_-\|dTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose-N,N-dimethyltransferase	unknown	unknown	gnl\|CDD\|379312
CP022904.1\|AXJ64120.1\|1433913_1434165_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
CP022904.1\|AXJ64123.1\|1437446_1437878_-\|tRNA-specific-adenosine-deaminase	unknown	unknown	gnl\|CDD\|131622

Protein	Function_ID	Function_description	E-value
CP022904.1\|AXJ64128.1\|1440372_1440942_-\|putative-nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|273101	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	2.64141e-76
CP022904.1\|AXJ64114.1\|1425142_1426282_-\|Chaperone-protein-DnaJ	gnl\|CDD\|237656	PRK14280, PRK14280, molecular chaperone DnaJ.	0
CP022904.1\|AXJ64119.1\|1431744_1433568_-\|Elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
CP022904.1\|AXJ64111.1\|1422093_1423440_-\|Threonylcarbamoyladenosine-tRNA-methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0
CP022904.1\|AXJ64116.1\|1428318_1428945_-\|heat-shock-protein-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	3.74407e-81
CP022904.1\|AXJ64121.1\|1434209_1435184_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	4.1415e-104
CP022904.1\|AXJ64113.1\|1424200_1425139_-\|Ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	9.7051e-134
CP022904.1\|AXJ64109.1\|1420697_1421405_-\|hypothetical-protein	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	5.49862e-65
CP022904.1\|AXJ64112.1\|1423446_1424199_-\|Ribosomal-RNA-small-subunit-methyltransferase-E	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	3.39876e-91
CP022904.1\|AXJ64110.1\|1421624_1421801_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.15423e-10
CP022904.1\|AXJ64122.1\|1435240_1437442_-\|ComEC-family-competence-protein	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	3.35731e-90
CP022904.1\|AXJ64124.1\|1437999_1438677_-\|ComE-operon-protein-1	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	8.07958e-34
CP022904.1\|AXJ64115.1\|1426417_1428250_-\|Chaperone-protein-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
CP022904.1\|AXJ64117.1\|1428976_1429954_-\|Heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	2.05887e-119
CP022904.1\|AXJ64126.1\|1439444_1439798_-\|Ribosomal-silencing-factor-RsfS	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	5.95861e-47
CP022904.1\|AXJ64127.1\|1439798_1440383_-\|putative-nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	2.21948e-80
CP022904.1\|AXJ64118.1\|1430054_1431212_-\|Oxygen-independent-coproporphyrinogen-III-oxidase-1	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
CP022904.1\|AXJ64125.1\|1438725_1439442_-\|dTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose-N,N-dimethyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	7.79783e-16
CP022904.1\|AXJ64120.1\|1433913_1434165_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.42889e-17
CP022904.1\|AXJ64123.1\|1437446_1437878_-\|tRNA-specific-adenosine-deaminase	gnl\|CDD\|131622	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.	5.88513e-94

>CP022904.1|AXJ64118.1|1430054_1431212_-|Oxygen-independent-coproporphyrinogen-III-oxidase-1
MDKQSEKRGIKMTVQSAYIHIPFCVRICTYCDFNKYFIQNQPVDEYLDALITEMSTAKYRNLKTMYVGGGTPTALSINQLERLLKAIRDTFTITGEYTFEANPDELTKEKVQLLEKYGVNRISMGVQTFKPELLSVLGRTHNTEDIYTSVLNAKNAGIKSISLDLMYHLPKQTIEDFEQSLDLALDMDIQHISSYGLILEPKTQFYNMYRKGLLKLPNEDLGADMYQLLMSKIEQSPFHQYEISNFALDGHESEHNKVYWFNEEYYGFGAGASGYVDGVRYTNINPVNHYIKAINKESKAILVSNKPSLTERMEEEMFLGLRLNEGVSSSRFKKKFDQSIESVFGQTINNLKEKELIVEKNDAIALTKRGKVIGNEVFEAFLIND
>CP022904.1|AXJ64117.1|1428976_1429954_-|Heat-inducible-transcription-repressor-HrcA
MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQYTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFSNDKLNTISNFVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLINTMNNHISNQSNSIYMGGKVKLIDALNESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETLKGQIAVIGPTAMHYQNVIQLLNRIW
>CP022904.1|AXJ64116.1|1428318_1428945_-|heat-shock-protein-GrpE
MTNKDESVEKNTESTVEETNIKQNIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERALQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVNQ
>CP022904.1|AXJ64115.1|1426417_1428250_-|Chaperone-protein-DnaK
MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKNGETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAESYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDKDEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDKNGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNEADSLVFQVEKTLTDLGENIGEEDKKSAEEKKDALKTALEGQDIEDIKSKKEELEKVIQELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK
>CP022904.1|AXJ64114.1|1425142_1426282_-|Chaperone-protein-DnaJ
MAKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENKTVKLEVKVPEGVDNEQQIRLAGEGSPGVNGGPAGDLYVVFRVKPSETFKRDGDDIYYKLNVSFPQAALGDEIKIPTLNNEVMLTIPAGTQTGKQFRLKEKGIKNVHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQLNGEEINEQPSNFKDRAKRFFKGE
>CP022904.1|AXJ64113.1|1424200_1425139_-|Ribosomal-protein-L11-methyltransferase
MNWTELSIIINHEAVELATNILENHGSNGVVIEDSDDLINQPEDKYGEIYALKKEDYPDKGVRLKAYFNEMTYDDKLRQQIKDELLNLDELDQHNIQFSEQIIAETDWENEWKNYFHPFRASKKFTIVPSWETYAKEADEELCIELDPGMAFGTGDHPTTSMCLKAIETYVLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPGNLLKDETEKFDIVIANILAHIIDEMIEDAYNTLNEGGYFITSGIIKEKYEGIQSHMERVGFKIISEQHDNGWVCLVGQKVSE
>CP022904.1|AXJ64112.1|1423446_1424199_-|Ribosomal-RNA-small-subunit-methyltransferase-E
MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVVKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGKLSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALSAISYEKELMG
>CP022904.1|AXJ64111.1|1422093_1423440_-|Threonylcarbamoyladenosine-tRNA-methylthiotransferase-MtaB
MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKVKITQANYPLNEGQAIKVVDFATNKSDREVLV
>CP022904.1|AXJ64110.1|1421624_1421801_-|30S-ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
>CP022904.1|AXJ64109.1|1420697_1421405_-|hypothetical-protein
MSYNNFLQMTTILESTAGDTWVEQVSNIIVQPIFTLILTCLTFLGFVYQLYSKKINAAGIIATLSLLILFLGFLIQGNVNMHSILIFSIGVILVVIELFVVGAVIGIIGMILITISITTLGDNLLFMLANVIVALILTIVEWVILVKIFNRKIPFLDKVILKDSTNSESGYNSHDNRSHLVGKTAQTVTDLRPAGIIFCENERIDAVSDGNFILRNKTVKILEVEGTRVVVREVD
>CP022904.1|AXJ64119.1|1431744_1433568_-|Elongation-factor-4
MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRDMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNELELLPVINKIDLPAAEPERVKQEIEDMIGLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISSIRIVDGVVKAGDKIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDDSRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCILRDGSEVTVDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE
>CP022904.1|AXJ64120.1|1433913_1434165_+|30S-ribosomal-protein-S20
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
>CP022904.1|AXJ64121.1|1434209_1435184_-|DNA-polymerase-III-subunit-delta
MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIVDACAETDYKLKSSYMDKQLILELFILSL
>CP022904.1|AXJ64122.1|1435240_1437442_-|ComEC-family-competence-protein
MLYVALSMIVGVLWNSSKVLSTFLFILLLYITYRKNKIVYAPISLFLIIFSSWYLHYSQQAIFNYINYIERNSQFNERAQVIQIQRQGSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNENKFVTLKLQSIVVQSCLESNRSNLIEKHKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGITINVLTLYAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQQLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFHDWLLDLFTRIKQSHFSVPKFNDWIFIIFIISVYYIFWLLAKRKYILVTFWTIIILTLLITFPTNSHHKITMLNVGQGDSILYEGGKNQNVLIDTGGKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKGYSSNTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLLKKYNLPEIDILKVGHHGSKTSSSKEFIEMIKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVDSNSYGNASGL
>CP022904.1|AXJ64123.1|1437446_1437878_-|tRNA-specific-adenosine-deaminase
MAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
>CP022904.1|AXJ64124.1|1437999_1438677_-|ComE-operon-protein-1
MYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI
>CP022904.1|AXJ64125.1|1438725_1439442_-|dTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose-N,N-dimethyltransferase
MSQYAEMSLVYDQLTQDQPYEKWFEIVKNHCKDESNILDIGCGTGSLTVQLEALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDTERLFFIAKK
>CP022904.1|AXJ64126.1|1439444_1439798_-|Ribosomal-silencing-factor-RsfS
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
>CP022904.1|AXJ64127.1|1439798_1440383_-|putative-nicotinate-nucleotide-adenylyltransferase
MNIEKAKRLAKEKLPEKRYNHSLRVAETAIKLAEIYDGDTSKVELAGVLHDFCKYDDLGKMYQIVRQYELGNDLLSYGSEILHGPVCAAIMEHEYGINDEEVLMAIKYHTTGRQQMTKTEKLIFIADYIEPGRTIPGVDDIRDMAYNQGSLDKTIYEISKRTVLFLIQKDITVYNKTIDCLNYYNYSDERIKDD
>CP022904.1|AXJ64128.1|1440372_1440942_-|putative-nicotinate-nucleotide-adenylyltransferase
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHNNFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH

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Crispr_ID: CP022904_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP022904_7

1868289-1868370

Orphan

Consensus_repeat	Method
GGCCCCCACCCCAACTTACATTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP022904_7

>merge|CP022904|7|1868289-1868370|CRISPRCasFinder
GGCCCCCACCCCAACTTACATTGTTTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCCACCCCAACTTGCATTGT

>CP022904|7|7|1868289-1868370|CRISPRCasFinder
GGCCCCCACCCCAACTTACATTGT	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG
GGCCCCCACCCCAACTTGCATTGT

Protein	Signature genes	Signature genes Name	Protein_function
CP022904.1\|AXJ64525.1\|1864021_1865077_-\|putative-leukocidin-like-protein-2-precursor	unknown	unknown	gnl\|CDD\|369625
CP022904.1\|AXJ64531.1\|1873570_1873855_-\|10-kDa-chaperonin	unknown	unknown	gnl\|CDD\|178988
CP022904.1\|AXJ64535.1\|1877189_1877975_+\|2-oxoglutaramate-amidase	unknown	unknown	gnl\|CDD\|143607
CP022904.1\|AXJ64522.1\|1860827_1861865_+\|Tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|271189
CP022904.1\|AXJ64533.1\|1874797_1876006_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275319
CP022904.1\|AXJ64537.1\|1878890_1879508_+\|Accessory-gene-regulator-protein-B	unknown	unknown	gnl\|CDD\|226899
CP022904.1\|AXJ64521.1\|1859929_1860634_+\|PemK-like-protein	unknown	unknown	gnl\|CDD\|367091
CP022904.1\|AXJ64519.1\|1859367_1859553_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376389
CP022904.1\|AXJ64526.1\|1865333_1866506_-\|Transposase,-Mutator-family	unknown	unknown	gnl\|CDD\|307151
CP022904.1\|AXJ64518.1\|1859224_1859371_+\|hypothetical-protein	unknown	unknown	unknown
CP022904.1\|AXJ64532.1\|1874029_1874773_+\|CAAX-amino-terminal-protease-self--immunity	unknown	unknown	gnl\|CDD\|376806
CP022904.1\|AXJ64524.1\|1862983_1864000_-\|putative-leukocidin-like-protein-1-precursor	unknown	unknown	gnl\|CDD\|369625
CP022904.1\|AXJ64523.1\|1861921_1862746_+\|Phospholipase-C-precursor	unknown	unknown	gnl\|CDD\|132436
CP022904.1\|AXJ64528.1\|1868511_1869819_+\|Ktr-system-potassium-uptake-protein-B	unknown	unknown	gnl\|CDD\|273349
CP022904.1\|AXJ64534.1\|1876202_1876829_+\|Nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
CP022904.1\|AXJ64529.1\|1869896_1871216_-\|Transposase	unknown	unknown	gnl\|CDD\|225995
CP022904.1\|AXJ64536.1\|1878574_1878709_-\|Delta-hemolysin	unknown	unknown	gnl\|CDD\|173213
CP022904.1\|AXJ64530.1\|1871878_1873495_-\|60-kDa-chaperonin	unknown	unknown	gnl\|CDD\|234573
CP022904.1\|AXJ64527.1\|1866844_1868068_+\|putative-succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|181490
CP022904.1\|AXJ64520.1\|1859622_1859790_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP022904.1\|AXJ64525.1\|1864021_1865077_-\|putative-leukocidin-like-protein-2-precursor	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.84035e-77
CP022904.1\|AXJ64536.1\|1878574_1878709_-\|Delta-hemolysin	gnl\|CDD\|173213	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin.	8.25732e-15
CP022904.1\|AXJ64535.1\|1877189_1877975_+\|2-oxoglutaramate-amidase	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	5.69545e-126
CP022904.1\|AXJ64522.1\|1860827_1861865_+\|Tyrosine-recombinase-XerC	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	5.55983e-25
CP022904.1\|AXJ64533.1\|1874797_1876006_-\|hypothetical-protein	gnl\|CDD\|275319	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein. Members of this family are putative virulence proteins of Mycoplasma and Ureaplasma species. Members share a region of sequence similarity (see TIGR04524) with protein M, a Mycoplasma genitalium protein that binds a conserved light chain region of IgG and blocks its protective function of antigen-specific binding. The seed alignment for this model includes an N-terminal signal-anchor domain and a proline-rich linker domain, and a C-terminal extension, in addition to the protein M-like domain recognized by TIGR04524. [Cellular processes, Pathogenesis].	4.29967e-07
CP022904.1\|AXJ64537.1\|1878890_1879508_+\|Accessory-gene-regulator-protein-B	gnl\|CDD\|226899	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription].	6.24386e-74
CP022904.1\|AXJ64521.1\|1859929_1860634_+\|PemK-like-protein	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	2.91252e-06
CP022904.1\|AXJ64519.1\|1859367_1859553_+\|hypothetical-protein	gnl\|CDD\|376389	pfam00815, Histidinol_dh, Histidinol dehydrogenase.	0.00485103
CP022904.1\|AXJ64530.1\|1871878_1873495_-\|60-kDa-chaperonin	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
CP022904.1\|AXJ64531.1\|1873570_1873855_-\|10-kDa-chaperonin	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.94304e-45
CP022904.1\|AXJ64524.1\|1862983_1864000_-\|putative-leukocidin-like-protein-1-precursor	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.05827e-99
CP022904.1\|AXJ64523.1\|1861921_1862746_+\|Phospholipase-C-precursor	gnl\|CDD\|132436	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins. [Cellular processes, Pathogenesis].	2.2954e-127
CP022904.1\|AXJ64528.1\|1868511_1869819_+\|Ktr-system-potassium-uptake-protein-B	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	7.96864e-82
CP022904.1\|AXJ64534.1\|1876202_1876829_+\|Nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	8.42197e-117
CP022904.1\|AXJ64529.1\|1869896_1871216_-\|Transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.75686e-114
CP022904.1\|AXJ64526.1\|1865333_1866506_-\|Transposase,-Mutator-family	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	0
CP022904.1\|AXJ64527.1\|1866844_1868068_+\|putative-succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	0
CP022904.1\|AXJ64532.1\|1874029_1874773_+\|CAAX-amino-terminal-protease-self--immunity	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.67124e-11

>CP022904.1|AXJ64527.1|1866844_1868068_+|putative-succinyl-diaminopimelate-desuccinylase
MTTFSEKEKIQLLADIVELQTENNNEIDVCNYLKDLFDKYDIKSEILKVNEHRANIVAEIGNGSPILALSGHMDVVDAGNQDNWTYPPFQLTEKAGKLYGRGTTDMKGGLMALVITLIELKEQNQLPQGTIRLLATAGEEKEQEGAKLLADKGYLDDVDGLIIAEPTGSGIYYAHKGSMSCKVTATGKAVHSSVPFIGDNAIDTLLEFYNQFKEKYSELKKHDTKHELDVAPMFKSLIGKEISEEDANYASGLTAVCSIINGGKQFNSVPDEASLEFNVRPVPEYDNDFIESFFQNIINDVDSNKLSLDIPSNHRPVTSDKNSKLITTIKDVASSYVEQDEIFVSALVGATDASSFLGDNKDNVDLAIFGPGNPLMAHQIDEYIEKDMYLKYIDIFKEASIQYLKEK
>CP022904.1|AXJ64526.1|1865333_1866506_-|Transposase,-Mutator-family
MTQVHFTLKSEEIQSIIEYSVKDDVSKNILTTVFNQLMENQRTEYIQAKEYERTENRQSQRNGYYERSFTTRVGTLELKVPRTRDGHFSPTVFERYQRNEKALMASMLEMYVSGVSTRKVSKIVEELCGKSVSKSFVSSLTEQLEPMVNEWQNRLLSEKNYPYLMTDVLYIKVREENRVLSKSCHIAIGITKDGDREIIGFMIQSGESEETWTTFFEYLKERGLQGTELVISDAHKGLVSAIRKSFTNVSWQRCQVHFLRNIFTTIPKKNSKSFREAVKGIFKFTDINLAREAKNRLIHDYIDQPKYSKACASLDDGFEDAFQYTVQGNSHNRLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHDEWIYSSRKYINFDK
>CP022904.1|AXJ64525.1|1864021_1865077_-|putative-leukocidin-like-protein-2-precursor
MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKNSTVPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKFESHKEEKNSNWLKYPSEYHVDFQVKRNRKTEILDQLPKNKISTAKVDSTFSYSSGGKFDSTKGIGRTSSNSYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDLKYGGEVKNRNDELLFYRNTRIATVENPELSFASKYRYPALVRSGFNPEFLTYLSNEKSNEKTQFEVTYTRNQDILKNRPGIHYAPPILEKNKDGQRLIVTYEVDWKNKTVKVVDKYSDDNKPYKEG
>CP022904.1|AXJ64524.1|1862983_1864000_-|putative-leukocidin-like-protein-1-precursor
MIKQLYKNITICSLAISTALTVFPATSYAKINSEIKAVSEKNLDGDTKMYTRTATTSDSQKNITQSLQFNFLTEPNYDKETVFIKAKGTIGSGLRILDPNGYWNSTLRWPGSYSVSIQNVDDNNNTNVTDFAPKNQDESREVKYTYGYKTGGDFSINRGGLTGNITKESNYSETISYQQPSYRTLLDQSTSHKGVGWKVEAHLINNMGHDHTRQLTNDSDNRTKSEIFSLTRNGNLWAKDNFTPKDKMPVTVSEGFNPEFLAVMSHDKKDKGKSQFVVHYKRSMDEFKIDWNRHGFWGYWSGENHVDKKEEKLSALYEVDWKTHDVKFVKVLNDNEKK
>CP022904.1|AXJ64523.1|1861921_1862746_+|Phospholipase-C-precursor
MYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYNDFSDHYPIKAYSK
>CP022904.1|AXJ64522.1|1860827_1861865_+|Tyrosine-recombinase-XerC
MKTRCYDGKKWQYEFKYEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDNYITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIMDVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEEDKKTTKILESM
>CP022904.1|AXJ64521.1|1859929_1860634_+|PemK-like-protein
MERNSTKKSSKDKILKAVNNFEEVCNSGKFKFKYLDDWLFTKSIIFKNETTLTNQKNFKVYPRGTIVYAKLGVNIGSEFSGNHFCVVLNKNDNKRNELITIVPLTSKDTKFSLKLQENLILKALEKMKTDHKTLRFDLDRIKEMHARSTKVKNLNPAIEKELDEIENNYMQLAKIIERYERFVGKQTYAIPSQVITISKKRISTLNDYDPTGHISFNEETLKIIEDFMKANILS
>CP022904.1|AXJ64520.1|1859622_1859790_+|hypothetical-protein
MKITNCKIKKETIVYEVLTSGNQPFTYELPKDLSSHNARKYLEFISQKIDGDRLN
>CP022904.1|AXJ64519.1|1859367_1859553_+|hypothetical-protein
MSTYKEIEHLHINTGGKELTQEQIEEAKAFIDSQEFKDMIREAKESHQRVMESKITDRTKL
>CP022904.1|AXJ64518.1|1859224_1859371_+|hypothetical-protein
MDFKEVDINIEEWEMVEIPFYTEEELTYRLNNGLPITKSELEEQESKK
>CP022904.1|AXJ64528.1|1868511_1869819_+|Ktr-system-potassium-uptake-protein-B
MNKVHKPLYFYLMLFFSTTIIGALLLYLPFTGKKPISFLDALFIASSAFTVTGLSPVDIGSQFNILGEIVILLLIQIGGLGIVTVTLLTLVFLNRKISMKNRFLIMVTWNIDEPGGVIKLIKHLAIYSLVTELIGMICLCLSFIPKFGIGKGLFLSLFTSVSAFNNAGFALFKNNLIDYSSDPIVIITISILIIFGGIGHFVVIDFINCKKLSKLSLHSKLVLTTTSILIIIGAITFFLLEQFNTMQHMGLVEKIGNSFFQSVTTRTAGFNSIDIASINKSTALMLMLLMFIGGAPLSAAGGIKITTFAVAFIFVLNYIRKENNVSVFNKEISDKHIKLSIVTINISFLFISIITFILSIINPNISLIKLLFEVVSAFGTVGLSMNLTTEYHGITKIIIIFVMLCGKVGLLTLLRTFIPPKSPKNYRYTKGQIYL
>CP022904.1|AXJ64529.1|1869896_1871216_-|Transposase
MCNDTLELLRIKDENIKYINQEIDVIIKGKKATVVNAVLTYKPSACYCCGVKNEGQIHKHGKRVSRITLLKTQGYNTYLNLAKQRFKCLECNGTFTAKTSIVDESCFISRCVTQKVIEEATKVKTEIDTAEDNCISPSTVSRIRTKAANSLRIKPFNCLPEHIAMDEFKSVKNVTGSMSFIFIDNDTHDVIDILENRTTRFLRAYFERFDLKNRQQVKTVTIDMYEPYVRLFRDLFPNAAIIFDRFHIVQHLNRELNKYRVQVMNEYRNKKGPNYTIFKNNWKVLLMDTSKTIFSKYRWNKSFKAYKRSSDIVEFMLSKDDILRRSYELVQGLRKDLRLCNWPKFINRLNSVSKKSVSKGVWKVVKYYRKHQRMLRNTIYYPAFNNGAIEGINNKIKLIKRISFGYRNFNNFKARIMMIFSLYKGEKKKTTKPNNGLAA
>CP022904.1|AXJ64530.1|1871878_1873495_-|60-kDa-chaperonin
MVKQLKFSEDARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVENKNEIAQVGAISAADEEIGRYISEAMEKVGNDGVITIEESNGLNTELEVVEGMQFDRGYQSPYMVTDSDKMVAELERPYILVTDKKISSFQDILPLLEQVVQSNRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVITDDLGLDLKDASIDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIEAEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEKNNDQPNMGGMPGMM
>CP022904.1|AXJ64531.1|1873570_1873855_-|10-kDa-chaperonin
MLKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE
>CP022904.1|AXJ64532.1|1874029_1874773_+|CAAX-amino-terminal-protease-self--immunity
MTRLWASLLTVIIYILSQFLPLLIVKKLPFVQYSGIELTKAVIYIQLVLFLIAATTIILINLKIKNPTKLELEVKEPKKYIIPWALLGFALVMIYQMVVSIVLTQIYGGQQVSPNTEKLIIIARKIPIFIFFVSIIGPLLEEYVFRKVIFGELFNAIKGNRIVAFIIATTVSSLIFALAHNDFKFIPVYFGMGVIFSLAYVWTKRLAVPIIIHMLQNGFVVIFQLLNPEALKKATEQANFIYHIFIP
>CP022904.1|AXJ64533.1|1874797_1876006_-|hypothetical-protein
MSYHWFKKMLLSTSILILSSSSLGLATHTVEAKDNLNGEKPTTNLNHNITSPSVNSEMNNNETGTPHESNQTGNEGTGSNSRDANPDSNNVKPDSNNQNPSTDSKPDPNNQNPSPNPKPDPDNPKPKPDPKPDPDKPKPNLDPKPDPDNPKPKPDPDKPKPNPNPKPDPNKPNPNPSPDPDQPGDSNHSGGSKNGGTWNPNASDGSNQGQWQPNGNQGNSQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEVTDEDIYNIIRKQNFSGNAYLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNESQRR
>CP022904.1|AXJ64534.1|1876202_1876829_+|Nitroreductase-family-protein
MGLFKKDKKAMTFDNAMEERRSIYNLKDSISISDDELESMIAHAVKHVPSSFNSQSTRIVLLLNDNNNKFWDNTKAILKEVMGENRDFEPTEQKIDNFKHSYGTILFYEDQDVVSGLQEQMPNYYDNFAIWSTQTNAMHQFAIWTALATKGIGASLQHYNPLVDEMTSKEFNIPKSWKLIAQMPFGDIREAAGEKTFNPVEDRFVIKK
>CP022904.1|AXJ64535.1|1877189_1877975_+|2-oxoglutaramate-amidase
MKVQIYQLPIIFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNYQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLTAGENVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK
>CP022904.1|AXJ64536.1|1878574_1878709_-|Delta-hemolysin
MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFTKK
>CP022904.1|AXJ64537.1|1878890_1879508_+|Accessory-gene-regulator-protein-B
MIKDCTKSYNNSEESGVKLNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQIIVGNFFKILVTYSISIFLSVFLFTLVTHLSYMLIRYNAHGAHAKSSILCYIQSILTFVFVPYFLINIDINFTYLLALSIIGLISVVIYAPAATKKQPIPIKLVKRKKYLSIIMYLLVLILSLIIHPFYAQFMLLGILVESITLLPIFFPKED

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Crispr_ID: CP022904_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP022904_8

1955073-1955154

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP022904_8

>merge|CP022904|8|1955073-1955154|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCTCAATTTCTACAGACAATGCAAGTTGGGG

>CP022904|8|8|1955073-1955154|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGATTCTCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP022904.1\|AXJ64609.1\|1959309_1959732_+\|Organic-hydroperoxide-resistance-protein-like-protein	unknown	unknown	gnl\|CDD\|274649
CP022904.1\|AXJ64592.1\|1945501_1946743_-\|putative-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
CP022904.1\|AXJ64595.1\|1949351_1950203_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224946
CP022904.1\|AXJ64596.1\|1950436_1950631_-\|CsbD-like-protein	unknown	unknown	gnl\|CDD\|225777
CP022904.1\|AXJ64602.1\|1955257_1956136_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226395
CP022904.1\|AXJ64606.1\|1957352_1957673_+\|Thioredoxin-like-protein-YdbP	unknown	unknown	gnl\|CDD\|239245
CP022904.1\|AXJ64601.1\|1954075_1954465_-\|Ribonuclease-M5	unknown	unknown	gnl\|CDD\|224572
CP022904.1\|AXJ64600.1\|1953786_1954083_-\|Thioredoxin	unknown	unknown	gnl\|CDD\|239245
CP022904.1\|AXJ64607.1\|1957823_1958363_-\|putative-oxidoreductase	unknown	unknown	gnl\|CDD\|380312
CP022904.1\|AXJ64598.1\|1951823_1952519_-\|Methionine-import-system-permease-protein-MetP	unknown	unknown	gnl\|CDD\|224922
CP022904.1\|AXJ64611.1\|1960779_1961397_+\|Arginine-exporter-protein-ArgO	unknown	unknown	gnl\|CDD\|224198
CP022904.1\|AXJ64597.1\|1950984_1951806_-\|Methionine-binding-lipoprotein-MetQ-precursor	unknown	unknown	gnl\|CDD\|224381
CP022904.1\|AXJ64594.1\|1948262_1949024_-\|YurY	unknown	unknown	gnl\|CDD\|223473
CP022904.1\|AXJ64608.1\|1958445_1959162_-\|3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|184156
CP022904.1\|AXJ64599.1\|1952511_1953537_-\|Methionine-import-ATP-binding-protein-MetN-2	unknown	unknown	gnl\|CDD\|224058
CP022904.1\|AXJ64604.1\|1956314_1956695_-\|Glycine-cleavage-system-H-protein	unknown	unknown	gnl\|CDD\|234918
CP022904.1\|AXJ64593.1\|1946857_1948165_-\|FeS-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|223791
CP022904.1\|AXJ64610.1\|1960130_1960625_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372596
CP022904.1\|AXJ64603.1\|1956137_1956251_-\|hypothetical-protein	unknown	unknown	unknown
CP022904.1\|AXJ64605.1\|1956852_1957209_-\|Regulatory-protein-MgsR	unknown	unknown	gnl\|CDD\|239334

Protein	Function_ID	Function_description	E-value
CP022904.1\|AXJ64609.1\|1959309_1959732_+\|Organic-hydroperoxide-resistance-protein-like-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
CP022904.1\|AXJ64592.1\|1945501_1946743_-\|putative-cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
CP022904.1\|AXJ64595.1\|1949351_1950203_+\|hypothetical-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	7.67366e-77
CP022904.1\|AXJ64596.1\|1950436_1950631_-\|CsbD-like-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
CP022904.1\|AXJ64602.1\|1955257_1956136_-\|hypothetical-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	3.13065e-77
CP022904.1\|AXJ64606.1\|1957352_1957673_+\|Thioredoxin-like-protein-YdbP	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.4922e-24
CP022904.1\|AXJ64601.1\|1954075_1954465_-\|Ribonuclease-M5	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	6.789e-37
CP022904.1\|AXJ64600.1\|1953786_1954083_-\|Thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
CP022904.1\|AXJ64607.1\|1957823_1958363_-\|putative-oxidoreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
CP022904.1\|AXJ64598.1\|1951823_1952519_-\|Methionine-import-system-permease-protein-MetP	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	7.66296e-99
CP022904.1\|AXJ64611.1\|1960779_1961397_+\|Arginine-exporter-protein-ArgO	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	2.60719e-61
CP022904.1\|AXJ64597.1\|1950984_1951806_-\|Methionine-binding-lipoprotein-MetQ-precursor	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.02861e-112
CP022904.1\|AXJ64594.1\|1948262_1949024_-\|YurY	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
CP022904.1\|AXJ64608.1\|1958445_1959162_-\|3-dehydroquinate-dehydratase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	3.2619e-146
CP022904.1\|AXJ64599.1\|1952511_1953537_-\|Methionine-import-ATP-binding-protein-MetN-2	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	2.03316e-170
CP022904.1\|AXJ64604.1\|1956314_1956695_-\|Glycine-cleavage-system-H-protein	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	9.01516e-70
CP022904.1\|AXJ64593.1\|1946857_1948165_-\|FeS-cluster-assembly-protein-SufB	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	3.36148e-135
CP022904.1\|AXJ64610.1\|1960130_1960625_+\|hypothetical-protein	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
CP022904.1\|AXJ64605.1\|1956852_1957209_-\|Regulatory-protein-MgsR	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56

>CP022904.1|AXJ64601.1|1954075_1954465_-|Ribonuclease-M5
MMAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>CP022904.1|AXJ64600.1|1953786_1954083_-|Thioredoxin
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>CP022904.1|AXJ64599.1|1952511_1953537_-|Methionine-import-ATP-binding-protein-MetN-2
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEHGPVTQVFENPQHTVTKRFVKEDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>CP022904.1|AXJ64598.1|1951823_1952519_-|Methionine-import-system-permease-protein-MetP
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWIVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>CP022904.1|AXJ64597.1|1950984_1951806_-|Methionine-binding-lipoprotein-MetQ-precursor
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYDLDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>CP022904.1|AXJ64596.1|1950436_1950631_-|CsbD-like-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>CP022904.1|AXJ64595.1|1949351_1950203_+|hypothetical-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTGLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFTGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>CP022904.1|AXJ64594.1|1948262_1949024_-|YurY
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>CP022904.1|AXJ64593.1|1946857_1948165_-|FeS-cluster-assembly-protein-SufB
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKHFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDKNASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>CP022904.1|AXJ64592.1|1945501_1946743_-|putative-cysteine-desulfurase
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPMQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDIDQLINALKQTKEFFSYEF
>CP022904.1|AXJ64602.1|1955257_1956136_-|hypothetical-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLSQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLNDLPEQQELFPVNEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQVHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>CP022904.1|AXJ64603.1|1956137_1956251_-|hypothetical-protein
MKENLLGTIIWSIATFYYSRMMKIMNLAILKIKIGGS
>CP022904.1|AXJ64604.1|1956314_1956695_-|Glycine-cleavage-system-H-protein
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE
>CP022904.1|AXJ64605.1|1956852_1957209_-|Regulatory-protein-MgsR
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>CP022904.1|AXJ64606.1|1957352_1957673_+|Thioredoxin-like-protein-YdbP
MQAIKSNESFKSIINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>CP022904.1|AXJ64607.1|1957823_1958363_-|putative-oxidoreductase
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>CP022904.1|AXJ64608.1|1958445_1959162_-|3-dehydroquinate-dehydratase
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFINDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIIKHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>CP022904.1|AXJ64609.1|1959309_1959732_+|Organic-hydroperoxide-resistance-protein-like-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>CP022904.1|AXJ64610.1|1960130_1960625_+|hypothetical-protein
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>CP022904.1|AXJ64611.1|1960779_1961397_+|Arginine-exporter-protein-ArgO
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGEAQIISPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF

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Crispr_ID: CP022904_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP022904_9

2022360-2022438

Unclear

Consensus_repeat	Method
AGAATTTCGAAAAGAAATTCTACA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of CP022904_9

>merge|CP022904|9|2022360-2022438|CRISPRCasFinder
AGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGCGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACA

>CP022904|9|9|2022360-2022438|CRISPRCasFinder
AGAATTTCGAAAAGAAATTCTACA	GGCAATGCAAGTTGGCGGGGCCCCAACACAG
AGAATTTCGAAAAGAAATTCTACA

Protein	Signature genes	Signature genes Name	Protein_function
CP022904.1\|AXJ64687.1\|2034547_2035120_-\|Putative-sigma-54-modulation-protein	unknown	unknown	gnl\|CDD\|224461
CP022904.1\|AXJ64680.1\|2022764_2025611_-\|UvrABC-system-protein-A	unknown	unknown	gnl\|CDD\|234734
CP022904.1\|AXJ64685.1\|2030177_2031170_-\|Peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
CP022904.1\|AXJ64679.1\|2021168_2022101_-\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
CP022904.1\|AXJ64689.1\|2035847_2036930_-\|UvrABC-system-protein-B	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|226583
CP022904.1\|AXJ64671.1\|2012386_2012974_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
CP022904.1\|AXJ64688.1\|2035180_2035855_-\|DNA-utilization-protein-GntX	unknown	unknown	gnl\|CDD\|223970
CP022904.1\|AXJ64681.1\|2025618_2027604_-\|UvrABC-system-protein-B	unknown	unknown	gnl\|CDD\|235395
CP022904.1\|AXJ64673.1\|2014592_2015588_-\|Gluconeogenesis-factor	unknown	unknown	gnl\|CDD\|211689
CP022904.1\|AXJ64684.1\|2028929_2029769_-\|Secretory-antigen-SsaA-precursor	unknown	unknown	gnl\|CDD\|226451
CP022904.1\|AXJ64676.1\|2018383_2019823_-\|Anaphase-promoting-complex,-cyclosome,-subunit-3	unknown	unknown	gnl\|CDD\|276808
CP022904.1\|AXJ64674.1\|2015584_2016496_-\|glmZ(sRNA)-inactivating-NTPase	unknown	unknown	gnl\|CDD\|224574
CP022904.1\|AXJ64686.1\|2031602_2034134_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
CP022904.1\|AXJ64677.1\|2019830_2020316_-\|Maltose-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100053
CP022904.1\|AXJ64675.1\|2017381_2018317_-\|Thioredoxin-reductase	unknown	unknown	gnl\|CDD\|273540
CP022904.1\|AXJ64683.1\|2028105_2028756_-\|5'-deoxynucleotidase-YfbR	unknown	unknown	gnl\|CDD\|378993
CP022904.1\|AXJ64682.1\|2027872_2028109_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227234
CP022904.1\|AXJ64670.1\|2011274_2012144_+\|Epimerase-family-protein	unknown	unknown	gnl\|CDD\|224015
CP022904.1\|AXJ64672.1\|2013537_2014482_-\|Putative-sporulation-transcription-regulator-WhiA	unknown	unknown	gnl\|CDD\|273194
CP022904.1\|AXJ64678.1\|2020323_2021163_-\|Prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527

Protein	Function_ID	Function_description	E-value
CP022904.1\|AXJ64687.1\|2034547_2035120_-\|Putative-sigma-54-modulation-protein	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37
CP022904.1\|AXJ64680.1\|2022764_2025611_-\|UvrABC-system-protein-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP022904.1\|AXJ64685.1\|2030177_2031170_-\|Peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
CP022904.1\|AXJ64679.1\|2021168_2022101_-\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP022904.1\|AXJ64689.1\|2035847_2036930_-\|UvrABC-system-protein-B	gnl\|CDD\|226583	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].	2.39813e-180
CP022904.1\|AXJ64671.1\|2012386_2012974_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP022904.1\|AXJ64688.1\|2035180_2035855_-\|DNA-utilization-protein-GntX	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.0058e-51
CP022904.1\|AXJ64681.1\|2025618_2027604_-\|UvrABC-system-protein-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP022904.1\|AXJ64673.1\|2014592_2015588_-\|Gluconeogenesis-factor	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
CP022904.1\|AXJ64684.1\|2028929_2029769_-\|Secretory-antigen-SsaA-precursor	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.97111e-42
CP022904.1\|AXJ64676.1\|2018383_2019823_-\|Anaphase-promoting-complex,-cyclosome,-subunit-3	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.14043e-06
CP022904.1\|AXJ64674.1\|2015584_2016496_-\|glmZ(sRNA)-inactivating-NTPase	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
CP022904.1\|AXJ64686.1\|2031602_2034134_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
CP022904.1\|AXJ64677.1\|2019830_2020316_-\|Maltose-O-acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
CP022904.1\|AXJ64675.1\|2017381_2018317_-\|Thioredoxin-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
CP022904.1\|AXJ64683.1\|2028105_2028756_-\|5'-deoxynucleotidase-YfbR	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
CP022904.1\|AXJ64682.1\|2027872_2028109_-\|hypothetical-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
CP022904.1\|AXJ64670.1\|2011274_2012144_+\|Epimerase-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	8.40916e-148
CP022904.1\|AXJ64672.1\|2013537_2014482_-\|Putative-sporulation-transcription-regulator-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
CP022904.1\|AXJ64678.1\|2020323_2021163_-\|Prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	1.75588e-120

>CP022904.1|AXJ64679.1|2021168_2022101_-|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP022904.1|AXJ64678.1|2020323_2021163_-|Prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>CP022904.1|AXJ64677.1|2019830_2020316_-|Maltose-O-acetyltransferase
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP022904.1|AXJ64676.1|2018383_2019823_-|Anaphase-promoting-complex,-cyclosome,-subunit-3
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP022904.1|AXJ64675.1|2017381_2018317_-|Thioredoxin-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP022904.1|AXJ64674.1|2015584_2016496_-|glmZ(sRNA)-inactivating-NTPase
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP022904.1|AXJ64673.1|2014592_2015588_-|Gluconeogenesis-factor
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP022904.1|AXJ64672.1|2013537_2014482_-|Putative-sporulation-transcription-regulator-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP022904.1|AXJ64671.1|2012386_2012974_-|ATP-dependent-Clp-protease-proteolytic-subunit
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP022904.1|AXJ64670.1|2011274_2012144_+|Epimerase-family-protein
MVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGMILSNGGGALQTMKLPYKYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE
>CP022904.1|AXJ64680.1|2022764_2025611_-|UvrABC-system-protein-A
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIDVPEYRRPASDRKISIRGARSNNLKGIDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYGKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>CP022904.1|AXJ64681.1|2025618_2027604_-|UvrABC-system-protein-B
MVEHYPFKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>CP022904.1|AXJ64682.1|2027872_2028109_-|hypothetical-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>CP022904.1|AXJ64683.1|2028105_2028756_-|5'-deoxynucleotidase-YfbR
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>CP022904.1|AXJ64684.1|2028929_2029769_-|Secretory-antigen-SsaA-precursor
MKKTLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>CP022904.1|AXJ64685.1|2030177_2031170_-|Peptide-chain-release-factor-2
MAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>CP022904.1|AXJ64686.1|2031602_2034134_-|preprotein-translocase-subunit-SecA
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>CP022904.1|AXJ64687.1|2034547_2035120_-|Putative-sigma-54-modulation-protein
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ
>CP022904.1|AXJ64688.1|2035180_2035855_-|DNA-utilization-protein-GntX
MNNCLSCGAKLYENITIYNLFKKPNRLCDRCKENWDNIKLDIKARRCSRCLKHLNQDEAYCLDCKFLSAHFNLMEQLYCQFQYDGLMKEMIHQYKFLKDYYLCELLAHLIEIPQTSYDYIVPIPSSPAHDLSRTFNPVEAVLKAKGIRFDKILKMSNRPKQSHLTKKERLADENPFIIDTELDLNGKEILLVDDIYTTGLTIHRAGCKLYAKNIRKFKVFAFAR
>CP022904.1|AXJ64689.1|2035847_2036930_-|UvrABC-system-protein-B
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVSPRVDVVVEISKRMKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSKVEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETMIKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKLECPAGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

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Crispr_ID: CP022904_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP022904_10

2422509-2422611

Orphan

Consensus_repeat	Method
CAAATTTAATACTCAATTCATATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP022904_10

>merge|CP022904|10|2422509-2422611|CRISPRCasFinder
CAAATTTAATACTCAATTCATATATAGCTTTGATTTAAAAACTGATTTTTTATAAACCTATAGAACTGTAATTTACTTTCAAATTTAATACTCAATTCATAAA

>CP022904|10|10|2422509-2422611|CRISPRCasFinder
CAAATTTAATACTCAATTCATATA	TAGCTTTGATTTAAAAACTGATTTTTTATAAACCTATAGAACTGTAATTTACTTT
CAAATTTAATACTCAATTCATAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP022904.1\|AXJ65039.1\|2430081_2430663_-\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|223483
CP022904.1\|AXJ65036.1\|2428736_2429363_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380196
CP022904.1\|AXJ65027.1\|2419114_2419693_-\|Xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
CP022904.1\|AXJ65028.1\|2420205_2420613_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584
CP022904.1\|AXJ65032.1\|2424937_2425693_-\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
CP022904.1\|AXJ65037.1\|2429475_2429571_-\|hypothetical-protein	unknown	unknown	unknown
CP022904.1\|AXJ65026.1\|2417846_2419115_-\|Uric-acid-permease-PucK	unknown	unknown	gnl\|CDD\|274468
CP022904.1\|AXJ65031.1\|2423469_2424858_+\|L-cystine-uptake-protein-TcyP	unknown	unknown	gnl\|CDD\|224736
CP022904.1\|AXJ65038.1\|2429629_2430016_+\|hypothetical-protein	unknown	unknown	unknown
CP022904.1\|AXJ65030.1\|2421535_2422492_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
CP022904.1\|AXJ65022.1\|2413031_2413736_+\|PemK-like-protein	unknown	unknown	gnl\|CDD\|367091
CP022904.1\|AXJ65035.1\|2428418_2428664_+\|hypothetical-protein	unknown	unknown	unknown
CP022904.1\|AXJ65024.1\|2414776_2416318_-\|GMP-synthase-[glutamine-hydrolyzing]	unknown	unknown	gnl\|CDD\|234614
CP022904.1\|AXJ65021.1\|2412360_2412633_+\|Transposase	unknown	unknown	gnl\|CDD\|225511
CP022904.1\|AXJ65025.1\|2416342_2417809_-\|Inosine-5'-monophosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
CP022904.1\|AXJ65040.1\|2431088_2431340_-\|Transglycosylase-associated-protein	unknown	unknown	gnl\|CDD\|225170
CP022904.1\|AXJ65034.1\|2426769_2428293_+\|Alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
CP022904.1\|AXJ65033.1\|2426184_2426754_+\|Alkyl-hydroperoxide-reductase-subunit-C	unknown	unknown	gnl\|CDD\|211789
CP022904.1\|AXJ65029.1\|2420755_2421418_+\|hypothetical-protein	unknown	unknown	unknown
CP022904.1\|AXJ65023.1\|2414127_2414664_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP022904.1\|AXJ65039.1\|2430081_2430663_-\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	2.4566e-49
CP022904.1\|AXJ65036.1\|2428736_2429363_+\|hypothetical-protein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.15385e-71
CP022904.1\|AXJ65027.1\|2419114_2419693_-\|Xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	9.01486e-119
CP022904.1\|AXJ65028.1\|2420205_2420613_+\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.17298e-12
CP022904.1\|AXJ65026.1\|2417846_2419115_-\|Uric-acid-permease-PucK	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	5.74823e-170
CP022904.1\|AXJ65031.1\|2423469_2424858_+\|L-cystine-uptake-protein-TcyP	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
CP022904.1\|AXJ65030.1\|2421535_2422492_+\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00265416
CP022904.1\|AXJ65032.1\|2424937_2425693_-\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	4.50551e-88
CP022904.1\|AXJ65022.1\|2413031_2413736_+\|PemK-like-protein	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	5.38181e-08
CP022904.1\|AXJ65024.1\|2414776_2416318_-\|GMP-synthase-[glutamine-hydrolyzing]	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
CP022904.1\|AXJ65021.1\|2412360_2412633_+\|Transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.23077e-11
CP022904.1\|AXJ65025.1\|2416342_2417809_-\|Inosine-5'-monophosphate-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
CP022904.1\|AXJ65040.1\|2431088_2431340_-\|Transglycosylase-associated-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.58864e-09
CP022904.1\|AXJ65034.1\|2426769_2428293_+\|Alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
CP022904.1\|AXJ65033.1\|2426184_2426754_+\|Alkyl-hydroperoxide-reductase-subunit-C	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124

>CP022904.1|AXJ65030.1|2421535_2422492_+|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKVLAESTNKVEKNAVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQSKNENAAETSNKEATVDADAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL
>CP022904.1|AXJ65029.1|2420755_2421418_+|hypothetical-protein
MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEEMDLRKPF
>CP022904.1|AXJ65028.1|2420205_2420613_+|hypothetical-protein
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHKEVQEHNSAYEEIDITHFAEASKGPKA
>CP022904.1|AXJ65027.1|2419114_2419693_-|Xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKNKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVGEE
>CP022904.1|AXJ65026.1|2417846_2419115_-|Uric-acid-permease-PucK
MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILVLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVK
>CP022904.1|AXJ65025.1|2416342_2417809_-|Inosine-5'-monophosphate-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>CP022904.1|AXJ65024.1|2414776_2416318_-|GMP-synthase-[glutamine-hydrolyzing]
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCKGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>CP022904.1|AXJ65023.1|2414127_2414664_+|hypothetical-protein
MHNKNEFNKKLKDFIGSDKRMALVKGYINEYKLTTVLRALNNSDYTKGTIHTRSIGNLKQIVDNRIIPKNITQNKIFKLSNLTLEVNLYERNTIYHGDFAIYYPVESALIIETDTPRLINHINNNPVQKIFIITTNDWSFNTLELEKIVDETIIYDLKQEDPKQYEILYKNKHGKLPY
>CP022904.1|AXJ65022.1|2413031_2413736_+|PemK-like-protein
MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYSIAIHSDVTSNKKRYYKSFSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTIVPLSSKGNKNYLKLNESVLNLTATDLKKQIIDISSKVQALTQKYRDIDIKLSTEDKKLLSNLNQKANELYRVIGVYSKHKGKDTYVNISAITTISKRRISKINDSDPTGTIIISEDDMNEIEKQLKIKFFSN
>CP022904.1|AXJ65021.1|2412360_2412633_+|Transposase
MTKERRTFSSEFKLQMVRLYKNGKLKNEIIRKYDLKPSIISNSIKQHQNTGPFNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI
>CP022904.1|AXJ65031.1|2423469_2424858_+|L-cystine-uptake-protein-TcyP
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLVYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKRAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLIILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFESNDNAALTSH
>CP022904.1|AXJ65032.1|2424937_2425693_-|NADPH-dependent-oxidoreductase
MSDYVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>CP022904.1|AXJ65033.1|2426184_2426754_+|Alkyl-hydroperoxide-reductase-subunit-C
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>CP022904.1|AXJ65034.1|2426769_2428293_+|Alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDEKSKELKELLTEISDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKNLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMSTGEEHLLNLDGIFVQIGLLPNTSWLKDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>CP022904.1|AXJ65035.1|2428418_2428664_+|hypothetical-protein
MYLSQTNQYENDIEKEKYVNEIIMLLRTIPTSKLIQPIMQLFIDNAILNIVQNDALLIEKATHARNHLRLWSLQGHRDIPN
>CP022904.1|AXJ65036.1|2428736_2429363_+|hypothetical-protein
MKKRLLLSTFLASALILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>CP022904.1|AXJ65037.1|2429475_2429571_-|hypothetical-protein
MRQLMGDFGIDREFKAIKKASNSNMLLDAKW
>CP022904.1|AXJ65038.1|2429629_2430016_+|hypothetical-protein
MMKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIILMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFISAIITLAIGGKSVDKNDSH
>CP022904.1|AXJ65039.1|2430081_2430663_-|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase
MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLCDYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISANPKYEKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQKDDIVIVAHQVVIRCLMVYFNKVSREEAVDLKVENCKPYIIE
>CP022904.1|AXJ65040.1|2431088_2431340_-|Transglycosylase-associated-protein
MFGFIGMLIVGGLIGWAAGAIMGKDIPGGILGNIIAGIIGSWVGGKLFGQWGPELGSIYILPALIGSIILIAIVTLILRAMRK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP022904_1	1.1\|171484\|33\|CP022904\|CRISPRCasFinder	171484-171516	33	CP022904.1	1158819-1158851	0	1.0
CP022904_7	7.1\|1868313\|34\|CP022904\|CRISPRCasFinder	1868313-1868346	34	CP022904.1	945802-945835	0	1.0
CP022904_7	7.1\|1868313\|34\|CP022904\|CRISPRCasFinder	1868313-1868346	34	CP022904.1	2022406-2022439	0	1.0
CP022904_9	9.1\|2022384\|31\|CP022904\|CRISPRCasFinder	2022384-2022414	31	CP022904.1	2557468-2557498	0	1.0
CP022904_2	2.1\|275136\|33\|CP022904\|CRISPRCasFinder	275136-275168	33	CP022904.1	1954785-1954817	1	0.97
CP022904_3	3.1\|439884\|31\|CP022904\|CRISPRCasFinder	439884-439914	31	CP022904.1	2009665-2009695	1	0.968
CP022904_6	6.1\|1431514\|33\|CP022904\|CRISPRCasFinder	1431514-1431546	33	CP022904.1	1158819-1158851	1	0.97
CP022904_6	6.1\|1431514\|33\|CP022904\|CRISPRCasFinder	1431514-1431546	33	CP022904.1	2016848-2016880	1	0.97
CP022904_7	7.1\|1868313\|34\|CP022904\|CRISPRCasFinder	1868313-1868346	34	CP022904.1	1558199-1558232	1	0.971
CP022904_8	8.1\|1955097\|34\|CP022904\|CRISPRCasFinder	1955097-1955130	34	CP022904.1	1158818-1158851	1	0.971
CP022904_9	9.1\|2022384\|31\|CP022904\|CRISPRCasFinder	2022384-2022414	31	CP022904.1	1465970-1466000	1	0.968
CP022904_9	9.1\|2022384\|31\|CP022904\|CRISPRCasFinder	2022384-2022414	31	CP022904.1	2557523-2557553	1	0.968
CP022904_1	1.1\|171484\|33\|CP022904\|CRISPRCasFinder	171484-171516	33	CP022904.1	1247141-1247173	2	0.939
CP022904_1	1.1\|171484\|33\|CP022904\|CRISPRCasFinder	171484-171516	33	CP022904.1	2016848-2016880	2	0.939
CP022904_2	2.1\|275136\|33\|CP022904\|CRISPRCasFinder	275136-275168	33	CP022904.1	1893825-1893857	2	0.939
CP022904_2	2.1\|275136\|33\|CP022904\|CRISPRCasFinder	275136-275168	33	CP022904.1	2009661-2009693	2	0.939
CP022904_3	3.1\|439884\|31\|CP022904\|CRISPRCasFinder	439884-439914	31	CP022904.1	71676-71706	2	0.935
CP022904_3	3.1\|439884\|31\|CP022904\|CRISPRCasFinder	439884-439914	31	CP022904.1	450685-450715	2	0.935
CP022904_3	3.1\|439884\|31\|CP022904\|CRISPRCasFinder	439884-439914	31	CP022904.1	952735-952765	2	0.935
CP022904_3	3.1\|439884\|31\|CP022904\|CRISPRCasFinder	439884-439914	31	CP022904.1	1158777-1158807	2	0.935
CP022904_3	3.1\|439884\|31\|CP022904\|CRISPRCasFinder	439884-439914	31	CP022904.1	1247185-1247215	2	0.935
CP022904_3	3.1\|439884\|31\|CP022904\|CRISPRCasFinder	439884-439914	31	CP022904.1	1446152-1446182	2	0.935
CP022904_3	3.1\|439884\|31\|CP022904\|CRISPRCasFinder	439884-439914	31	CP022904.1	1764653-1764683	2	0.935
CP022904_3	3.1\|439884\|31\|CP022904\|CRISPRCasFinder	439884-439914	31	CP022904.1	1954789-1954819	2	0.935
CP022904_3	3.1\|439884\|31\|CP022904\|CRISPRCasFinder	439884-439914	31	CP022904.1	2191852-2191882	2	0.935
CP022904_3	3.1\|439884\|31\|CP022904\|CRISPRCasFinder	439884-439914	31	CP022904.1	2477594-2477624	2	0.935
CP022904_7	7.1\|1868313\|34\|CP022904\|CRISPRCasFinder	1868313-1868346	34	CP022904.1	1163192-1163225	2	0.941
CP022904_7	7.1\|1868313\|34\|CP022904\|CRISPRCasFinder	1868313-1868346	34	CP022904.1	2872116-2872149	2	0.941

1. spacer 1.1|171484|33|CP022904|CRISPRCasFinder matches to position: 1158819-1158851, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

2. spacer 7.1|1868313|34|CP022904|CRISPRCasFinder matches to position: 945802-945835, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

3. spacer 7.1|1868313|34|CP022904|CRISPRCasFinder matches to position: 2022406-2022439, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

4. spacer 9.1|2022384|31|CP022904|CRISPRCasFinder matches to position: 2557468-2557498, mismatch: 0, identity: 1.0

ggcaatgcaagttggcggggccccaacacag	CRISPR spacer
ggcaatgcaagttggcggggccccaacacag	Protospacer
*******************************

5. spacer 2.1|275136|33|CP022904|CRISPRCasFinder matches to position: 1954785-1954817, mismatch: 1, identity: 0.97

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcggaaagtcagcttacaataatg	Protospacer
*** *****************************

6. spacer 3.1|439884|31|CP022904|CRISPRCasFinder matches to position: 2009665-2009695, mismatch: 1, identity: 0.968

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacggaaagtcagcttacaataatgtg	Protospacer
*******.***********************

7. spacer 6.1|1431514|33|CP022904|CRISPRCasFinder matches to position: 1158819-1158851, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

8. spacer 6.1|1431514|33|CP022904|CRISPRCasFinder matches to position: 2016848-2016880, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attggaaatccaatttctctgtgttggggccca	Protospacer
*****.***************************

9. spacer 7.1|1868313|34|CP022904|CRISPRCasFinder matches to position: 1558199-1558232, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

10. spacer 8.1|1955097|34|CP022904|CRISPRCasFinder matches to position: 1158818-1158851, mismatch: 1, identity: 0.971

atgggccccaacaaagagaaattggattctcaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
*****************************.****

11. spacer 9.1|2022384|31|CP022904|CRISPRCasFinder matches to position: 1465970-1466000, mismatch: 1, identity: 0.968

ggcaatgcaagttggcggggccccaacacag	CRISPR spacer
ggcaatggaagttggcggggccccaacacag	Protospacer
******* ***********************

12. spacer 9.1|2022384|31|CP022904|CRISPRCasFinder matches to position: 2557523-2557553, mismatch: 1, identity: 0.968

ggcaatgcaagttggcggggccccaacacag	CRISPR spacer
ggtaatgcaagttggcggggccccaacacag	Protospacer
**.****************************

13. spacer 1.1|171484|33|CP022904|CRISPRCasFinder matches to position: 1247141-1247173, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tggaccccaacaaagagaaattgtattcccaat	Protospacer
***.******************* *********

14. spacer 1.1|171484|33|CP022904|CRISPRCasFinder matches to position: 2016848-2016880, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacacagagaaattggatttccaat	Protospacer
************ **************.*****

15. spacer 2.1|275136|33|CP022904|CRISPRCasFinder matches to position: 1893825-1893857, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaggctggcggaaagtcagcttacaataatg	Protospacer
*** .****************************

16. spacer 2.1|275136|33|CP022904|CRISPRCasFinder matches to position: 2009661-2009693, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacggaaagtcagcttacaataatg	Protospacer
*** *****.***********************

17. spacer 3.1|439884|31|CP022904|CRISPRCasFinder matches to position: 71676-71706, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

18. spacer 3.1|439884|31|CP022904|CRISPRCasFinder matches to position: 450685-450715, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

19. spacer 3.1|439884|31|CP022904|CRISPRCasFinder matches to position: 952735-952765, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

20. spacer 3.1|439884|31|CP022904|CRISPRCasFinder matches to position: 1158777-1158807, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

21. spacer 3.1|439884|31|CP022904|CRISPRCasFinder matches to position: 1247185-1247215, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

22. spacer 3.1|439884|31|CP022904|CRISPRCasFinder matches to position: 1446152-1446182, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

23. spacer 3.1|439884|31|CP022904|CRISPRCasFinder matches to position: 1764653-1764683, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

24. spacer 3.1|439884|31|CP022904|CRISPRCasFinder matches to position: 1954789-1954819, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

25. spacer 3.1|439884|31|CP022904|CRISPRCasFinder matches to position: 2191852-2191882, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

26. spacer 3.1|439884|31|CP022904|CRISPRCasFinder matches to position: 2477594-2477624, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

27. spacer 7.1|1868313|34|CP022904|CRISPRCasFinder matches to position: 1163192-1163225, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

28. spacer 7.1|1868313|34|CP022904|CRISPRCasFinder matches to position: 2872116-2872149, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP022904_4	4.1\|547923\|34\|CP022904\|CRISPRCasFinder	547923-547956	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
CP022904_4	4.1\|547923\|34\|CP022904\|CRISPRCasFinder	547923-547956	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765
CP022904_5	5.1\|560247\|32\|CP022904\|CRISPRCasFinder	560247-560278	32	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	41454-41485	9	0.719
CP022904_5	5.1\|560247\|32\|CP022904\|CRISPRCasFinder	560247-560278	32	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	296489-296520	10	0.688

1. spacer 4.1|547923|34|CP022904|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
agcatataaaagctataaagctaaagatatgcaa	Protospacer
  **  *. **.* ********************

2. spacer 4.1|547923|34|CP022904|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
tactgtttataacaataaagctaaagttattcaa	Protospacer
. * ***   **************** *** ***

3. spacer 5.1|560247|32|CP022904|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 9, identity: 0.719

aaaagtaggagcgcctgcgctaagcgcatgca	CRISPR spacer
tggaggtggagcgcctgcgcaaggcgcatgag	Protospacer
 ..**  ************* *.******* .

4. spacer 5.1|560247|32|CP022904|CRISPRCasFinder matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

aaaagtaggagcgcctgcgctaagcgcatgca	CRISPR spacer
tcgaagccgagcgcctgcgcgtagcgcatgcg	Protospacer
  .*.   ************  *********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

866932 : 912644

Staphylococcus_phage(75.36%)

portal,tail,holin,head

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXJ63591.1\|866932_867415_+	Phosphopantetheine adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.6e-28	46.2
AXJ63592.1\|867476_868616_-	hypothetical protein	NA	NA	NA	NA
AXJ63593.1\|868742_869300_+	hypothetical protein	NA	NA	NA	NA
AXJ63594.1\|869379_869553_+	50S ribosomal protein L32	NA	NA	NA	NA
AXJ63595.1\|869669_871055_-	DNA-invertase hin	I1W625	Staphylococcus_phage	2.5e-265	100.0
AXJ63596.1\|871261_871942_-	PemK-like protein	A0A2H4PQQ5	Staphylococcus_phage	5.1e-123	100.0
AXJ63597.1\|871973_872438_-	hypothetical protein	A0A0N9BAX8	Staphylococcus_phage	8.4e-85	100.0
AXJ63598.1\|872450_872774_-	Antitoxin PezA	A0A0H3U2V8	Staphylococcus_phage	2.0e-53	100.0
AXJ63599.1\|872937_873186_+	Helix-turn-helix domain protein	A0A2K9VBT6	Staphylococcus_phage	1.7e-39	100.0
AXJ63600.1\|873198_873642_+	hypothetical protein	W5R971	Staphylococcus_phage	4.4e-75	99.3
AXJ63601.1\|873656_873800_+	hypothetical protein	W5R8I6	Staphylococcus_phage	2.5e-16	100.0
AXJ63602.1\|873789_873999_-	hypothetical protein	W5R9J5	Staphylococcus_phage	1.2e-30	100.0
AXJ63603.1\|874438_874624_+	helix-turn-helix protein	S4SUN2	Staphylococcus_phage	1.7e-25	100.0
AXJ63604.1\|874625_875378_+	Phage antirepressor protein KilAC domain protein	A0A1X9H0A0	Staphylococcus_phage	4.3e-139	99.6
AXJ63605.1\|875393_875570_+	hypothetical protein	S4SVC9	Staphylococcus_phage	2.4e-24	96.6
AXJ63606.1\|875544_875775_-	hypothetical protein	C8CGY3	Staphylococcus_phage	2.3e-35	100.0
AXJ63607.1\|875833_875962_+	hypothetical protein	C8CGY4	Staphylococcus_phage	7.3e-15	100.0
AXJ63608.1\|875954_876116_+	hypothetical protein	C8CGY5	Staphylococcus_phage	2.5e-20	100.0
AXJ63609.1\|876209_876470_+	hypothetical protein	Q4ZDR5	Staphylococcus_virus	5.8e-43	98.8
AXJ63610.1\|876479_876701_+	hypothetical protein	A0A1X9H047	Staphylococcus_phage	1.2e-33	100.0
AXJ63611.1\|876693_877317_+	hypothetical protein	A0A2H4PQQ6	Staphylococcus_phage	1.4e-114	100.0
AXJ63612.1\|877316_877742_+	Single-stranded DNA-binding protein ssb	B7T0A5	Staphylococcus_virus	1.6e-58	88.7
AXJ63613.1\|877752_878304_+	NUMOD4 motif protein	A0A2H4PQR4	Staphylococcus_phage	1.6e-106	100.0
AXJ63614.1\|878304_878979_+	hypothetical protein	Q4ZCW9	Staphylococcus_virus	2.0e-127	97.8
AXJ63615.1\|878971_879727_+	Replication initiation and membrane attachment	C8CGZ1	Staphylococcus_phage	3.8e-143	100.0
AXJ63616.1\|879726_880083_+	hypothetical protein	M9NS37	Staphylococcus_phage	8.2e-64	100.0
AXJ63617.1\|880079_881321_+	Replicative DNA helicase	M9NSS7	Staphylococcus_phage	5.7e-229	99.8
AXJ63618.1\|881317_881533_+	hypothetical protein	Q4ZBU5	Staphylococcus_virus	4.8e-35	100.0
AXJ63619.1\|881536_881758_+	hypothetical protein	Q9G021	Staphylococcus_phage	1.3e-35	100.0
AXJ63620.1\|881767_882193_+	DNA N-6-adenine-methyltransferase (Dam)	C8CGZ6	Staphylococcus_phage	4.7e-82	100.0
AXJ63621.1\|882189_882594_+	hypothetical protein	A0A0H4ISQ5	Staphylococcus_phage	2.6e-66	99.3
AXJ63622.1\|882598_882784_+	hypothetical protein	A0A0N9BBI1	Staphylococcus_phage	1.9e-27	100.0
AXJ63623.1\|882869_883124_+	hypothetical protein	D2JGL1	Staphylococcus_phage	1.3e-42	100.0
AXJ63624.1\|883129_883372_+	hypothetical protein	D2JGL2	Staphylococcus_phage	1.7e-41	100.0
AXJ63625.1\|883384_883786_+	hypothetical protein	Q4ZAC1	Staphylococcus_virus	1.1e-69	100.0
AXJ63626.1\|883782_884130_+	YopX protein	D2JGL4	Staphylococcus_phage	5.9e-59	100.0
AXJ63627.1\|884126_884435_+	hypothetical protein	Q4ZD83	Staphylococcus_virus	6.2e-52	100.0
AXJ63628.1\|884427_884664_+	hypothetical protein	C8CH04	Staphylococcus_phage	1.1e-35	100.0
AXJ63629.1\|884668_885211_+	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Q4ZD81	Staphylococcus_virus	1.5e-96	100.0
AXJ63630.1\|885247_885484_+	hypothetical protein	C8CH06	Staphylococcus_phage	2.4e-35	98.7
AXJ63631.1\|885508_885745_+	hypothetical protein	A0A0N7E0U3	Staphylococcus_phage	1.8e-35	97.4
AXJ63632.1\|885734_885911_+	Transcriptional activator RinB	R4IFL3	Staphylococcus_phage	1.1e-21	98.2
AXJ63633.1\|885911_886058_+	hypothetical protein	Q4ZBJ8	Staphylococcus_phage	7.5e-16	100.0
AXJ63634.1\|886081_886504_+	hypothetical protein	A0A0F6N3E5	Staphylococcus_phage	1.2e-74	100.0
AXJ63635.1\|886832_887327_+	Terminase small subunit	R4IH30	Staphylococcus_phage	1.4e-74	99.4
AXJ63636.1\|887319_888528_+	Terminase-like family protein	R4IG95	Staphylococcus_phage	6.1e-236	100.0
AXJ63637.1\|888541_889960_+\|portal	Phage portal protein, SPP1 Gp6-like	R4IFL5	Staphylococcus_phage	4.3e-273	99.4
AXJ63638.1\|889916_890879_+	NAD(+)--arginine ADP-ribosyltransferase EFV	Q4ZB44	Staphylococcus_virus	4.6e-178	99.7
AXJ63639.1\|890976_891501_+	Phage minor structural protein GP20	Q4ZB42	Staphylococcus_virus	2.9e-65	100.0
AXJ63640.1\|891512_892472_+	hypothetical protein	Q4ZB40	Staphylococcus_virus	1.9e-179	100.0
AXJ63641.1\|892488_892815_+	hypothetical protein	Q4ZB39	Staphylococcus_virus	1.0e-52	99.1
AXJ63642.1\|892814_893129_+\|head,tail	Phage gp6-like head-tail connector protein	Q4ZB38	Staphylococcus_virus	2.6e-53	100.0
AXJ63643.1\|893121_893457_+	hypothetical protein	A7YGU9	Staphylococcus_virus	8.8e-60	98.2
AXJ63644.1\|893443_893734_+	hypothetical protein	A0A0E3XCY8	Staphylococcus_phage	3.8e-43	98.8
AXJ63645.1\|893826_894510_+	hypothetical protein	W5RA17	Staphylococcus_phage	1.2e-42	46.2
AXJ63646.1\|894872_895298_+	hypothetical protein	A0A0E3XBP2	Staphylococcus_phage	1.2e-74	100.0
AXJ63647.1\|895298_895856_+	hypothetical protein	Q4ZBQ8	Staphylococcus_phage	8.2e-103	100.0
AXJ63648.1\|895922_896429_+	Phage protein	Q4ZBQ7	Staphylococcus_phage	2.7e-92	100.0
AXJ63649.1\|896473_896758_+	hypothetical protein	A0A0N7E0V9	Staphylococcus_phage	8.8e-45	100.0
AXJ63650.1\|896761_899647_+	hypothetical protein	A0A2H4JGV1	uncultured_Caudovirales_phage	0.0e+00	95.3
AXJ63651.1\|899661_900603_+\|tail	Phage tail protein	A0A2H4JFG3	uncultured_Caudovirales_phage	2.8e-180	99.0
AXJ63652.1\|900613_902500_+\|tail	Prophage endopeptidase tail	A0A0H3U2R3	Staphylococcus_phage	0.0e+00	100.0
AXJ63653.1\|902512_904411_+	hypothetical protein	A0A0H3U448	Staphylococcus_phage	0.0e+00	98.4
AXJ63654.1\|904410_906234_+	hypothetical protein	M9NUJ5	Staphylococcus_phage	1.8e-292	97.7
AXJ63655.1\|906233_906611_+	hypothetical protein	Q8LTH7	Staphylococcus_phage	7.3e-55	100.0
AXJ63656.1\|906611_906788_+	hypothetical protein	Q8LTH6	Staphylococcus_phage	6.1e-28	100.0
AXJ63657.1\|906828_907128_+	hypothetical protein	Q4ZBP8	Staphylococcus_phage	1.3e-46	100.0
AXJ63658.1\|907264_909139_+	Bifunctional autolysin precursor	Q4ZBP7	Staphylococcus_phage	0.0e+00	100.0
AXJ63659.1\|909151_910324_+	hypothetical protein	A0A0N9BAZ1	Staphylococcus_phage	4.3e-194	98.5
AXJ63660.1\|910329_910725_+	hypothetical protein	Q4ZBP5	Staphylococcus_phage	2.7e-68	100.0
AXJ63661.1\|910780_911218_+\|holin	Bacteriophage holin	S4SVG2	Staphylococcus_phage	4.1e-73	99.3
AXJ63662.1\|911198_912644_+	putative cell wall hydrolase LytN precursor	Q4ZB16	Staphylococcus_virus	4.8e-296	100.0

DBSCAN-SWA_2

1481158 : 1490201

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXJ64168.1\|1481158_1481677_-	Adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
AXJ64169.1\|1481698_1483972_-	Single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	8.1e-64	29.3
AXJ64170.1\|1484174_1486454_-	bifunctional preprotein translocase subunit SecD/SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AXJ64171.1\|1486728_1486989_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AXJ64172.1\|1487007_1488147_-\|tRNA	Queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AXJ64173.1\|1488169_1489195_-\|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
AXJ64174.1\|1489196_1490201_-	Holliday junction ATP-dependent DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_3

1610916 : 1685899

Staphylococcus_phage(94.23%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXJ64275.1\|1610916_1611561_-\|tRNA	tRNA (guanine-N(7)-)-methyltransferase	NA	NA	NA	NA
AXJ64276.1\|1611575_1612367_-	Phosphotransferase enzyme family protein	NA	NA	NA	NA
AXJ64277.1\|1612916_1613765_-	D-alanine aminotransferase	NA	NA	NA	NA
AXJ64278.1\|1613768_1615178_-	Putative dipeptidase	NA	NA	NA	NA
AXJ64279.1\|1615621_1616044_-	hypothetical protein	NA	NA	NA	NA
AXJ64280.1\|1616060_1616756_-	Ribosomal small subunit pseudouridine synthase A	NA	NA	NA	NA
AXJ64281.1\|1616752_1618414_-	putative cell division protein YtgP	NA	NA	NA	NA
AXJ64282.1\|1618820_1620089_+	tricarballylate dehydrogenase	A0A2H4PQX1	Staphylococcus_phage	9.1e-57	99.1
AXJ64283.1\|1620205_1626766_-	Extracellular matrix-binding protein ebh precursor	A0A2H4PQU6	Staphylococcus_phage	4.0e-305	98.2
AXJ64284.1\|1627091_1627403_-	molybdopterin biosynthesis-like protein MoeZ	A0A2H4PQR9	Staphylococcus_phage	4.8e-52	99.0
AXJ64285.1\|1627424_1629842_-\|tRNA	Leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.5
AXJ64286.1\|1630129_1631311_-	Multidrug resistance protein MdtH	A0A2H4PQR6	Staphylococcus_phage	7.3e-218	99.7
AXJ64287.1\|1631420_1632374_+	coproporphyrinogen III oxidase	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AXJ64288.1\|1632370_1632934_+	16S rRNA m(4)C1402 methyltransferase	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AXJ64289.1\|1633056_1633458_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA
AXJ64290.1\|1634029_1634857_-	Phospholipase YtpA	NA	NA	NA	NA
AXJ64291.1\|1635090_1636092_+	Proline dehydrogenase 1	A0A2H4PQT6	Staphylococcus_phage	2.6e-184	99.4
AXJ64292.1\|1636213_1636678_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-70	100.0
AXJ64293.1\|1636690_1637872_-	Riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	2.1e-225	99.2
AXJ64294.1\|1637882_1638515_-	Riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.5e-111	98.6
AXJ64295.1\|1638521_1639565_-	Riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	5.3e-196	98.8
AXJ64296.1\|1640045_1641548_-	hypothetical protein	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
AXJ64297.1\|1642070_1642385_+	Transcriptional repressor SdpR	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
AXJ64298.1\|1642384_1643677_+	Arsenical pump membrane protein	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
AXJ64299.1\|1643763_1644618_-	Bifunctional autolysin precursor	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AXJ64300.1\|1644893_1645118_-	hypothetical protein	NA	NA	NA	NA
AXJ64301.1\|1645316_1645787_+	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	8.8e-82	98.1
AXJ64302.1\|1645899_1646343_+	hypothetical protein	NA	NA	NA	NA
AXJ64303.1\|1646329_1646773_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
AXJ64304.1\|1647068_1647704_+\|protease	CAAX amino terminal protease self- immunity	NA	NA	NA	NA
AXJ64305.1\|1648143_1648857_-	Transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AXJ64306.1\|1649116_1649419_+	hypothetical protein	NA	NA	NA	NA
AXJ64307.1\|1649674_1650040_+	Putative fluoride ion transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AXJ64308.1\|1650036_1650390_+	Putative fluoride ion transporter CrcB	A0A2H4PQQ7	Staphylococcus_phage	6.5e-13	88.0
AXJ64309.1\|1652386_1653220_-	Glyoxal reductase	A0A2H4PQR8	Staphylococcus_phage	7.8e-158	99.3
AXJ64310.1\|1653431_1654340_-	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
AXJ64311.1\|1654461_1655658_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	4.3e-218	99.5
AXJ64312.1\|1656029_1657622_+	Phosphoenolpyruvate carboxykinase [ATP]	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AXJ64313.1\|1657999_1658770_-	Prolyl oligopeptidase family protein	A0A2H4PQM6	Staphylococcus_phage	1.5e-142	98.8
AXJ64314.1\|1658750_1659230_-	Putative 8-oxo-dGTP diphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	3.0e-85	99.4
AXJ64315.1\|1659289_1659547_+	Putative membrane protein insertion efficiency factor	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AXJ64316.1\|1659543_1660545_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	5.3e-185	97.3
AXJ64317.1\|1660549_1662028_-	2-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.8e-283	97.6
AXJ64318.1\|1662186_1662669_-	hypothetical protein	A0A2H4PQN7	Staphylococcus_phage	3.8e-80	99.3
AXJ64319.1\|1662980_1663595_+	SPBc2 prophage-derived endonuclease YokF precursor	A0A2H4PQM8	Staphylococcus_phage	1.1e-42	93.1
AXJ64320.1\|1663675_1664671_+	Telomeric repeat-binding factor 2	A0A2H4PQN2	Staphylococcus_phage	2.6e-67	97.9
AXJ64321.1\|1664745_1665372_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.1e-74	79.8
AXJ64322.1\|1665412_1665754_+	hypothetical protein	A0A2H4PQN6	Staphylococcus_phage	1.1e-54	94.7
AXJ64323.1\|1665854_1666427_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	2.3e-23	93.1
AXJ64324.1\|1666624_1667194_-	Integrase core domain protein	A0A2I7SC85	Paenibacillus_phage	1.3e-55	56.8
AXJ64325.1\|1667544_1667637_-	hypothetical protein	A0A2H4PQU1	Staphylococcus_phage	3.7e-05	87.5
AXJ64326.1\|1668224_1668725_-	hypothetical protein	NA	NA	NA	NA
AXJ64327.1\|1669176_1670406_-	EcoKI restriction-modification system protein HsdS	A0A2H4PQP5	Staphylococcus_phage	4.0e-134	64.7
AXJ64328.1\|1670398_1671955_-	putative type I restriction enzymeP M protein	A0A2H4PQP4	Staphylococcus_phage	1.6e-289	100.0
AXJ64329.1\|1672315_1673035_-\|protease	Serine protease SplF precursor	A0A2H4PQP1	Staphylococcus_phage	1.9e-131	99.6
AXJ64330.1\|1673192_1673912_-\|protease	Serine protease SplD precursor	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
AXJ64331.1\|1674032_1674752_-\|protease	Serine protease SplC precursor	A0A2H4PQP7	Staphylococcus_phage	8.6e-129	98.3
AXJ64332.1\|1674809_1675532_-\|protease	Serine protease SplB precursor	A0A2H4PQN0	Staphylococcus_phage	3.5e-130	98.3
AXJ64333.1\|1675656_1676364_-\|protease	Serine protease SplA precursor	A0A2H4PQN3	Staphylococcus_phage	5.1e-126	96.6
AXJ64334.1\|1677337_1678510_-	Transposase, Mutator family	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
AXJ64335.1\|1678659_1679241_+	hypothetical protein	A0A2H4PQH6	Staphylococcus_phage	9.6e-54	64.8
AXJ64336.1\|1679713_1679932_-	hypothetical protein	A0A2H4PQH0	Staphylococcus_phage	2.0e-25	80.6
AXJ64337.1\|1680187_1680661_+	hypothetical protein	NA	NA	NA	NA
AXJ64338.1\|1680665_1681457_+	hypothetical protein	NA	NA	NA	NA
AXJ64339.1\|1681826_1682810_-	Leucotoxin LukDv precursor	A0A2H4PQH7	Staphylococcus_phage	1.8e-185	99.4
AXJ64340.1\|1682811_1683747_-	Leucotoxin LukEv precursor	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0
AXJ64341.1\|1684642_1684741_+	hypothetical protein	A0A2H4PQI6	Staphylococcus_phage	1.4e-10	100.0
AXJ64342.1\|1685110_1685899_+	hypothetical protein	A0A2H4PQI0	Staphylococcus_phage	3.6e-144	98.5

DBSCAN-SWA_4

1819116 : 1866506

Staphylococcus_phage(98.51%)

capsid,tail,holin,protease,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXJ64460.1\|1819116_1819317_+	Phospholipase C precursor	A0A1P8L6A7	Staphylococcus_phage	3.4e-27	100.0
AXJ64461.1\|1820491_1820842_-	Complement inhibitor precursor	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
AXJ64462.1\|1821525_1821975_+	Chemotaxis inhibitory protein precursor	A0A1P8L6A8	Staphylococcus_phage	1.1e-78	100.0
AXJ64463.1\|1822069_1822366_-	Bacterial SH3 domain protein	A0A1P8L6B4	Staphylococcus_phage	1.3e-51	100.0
AXJ64464.1\|1823054_1823546_-	Staphylokinase precursor	A0A1X9H028	Staphylococcus_phage	9.5e-87	100.0
AXJ64465.1\|1823736_1824492_-	putative cell wall hydrolase LytN precursor	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
AXJ64466.1\|1824503_1824758_-\|holin	Bacteriophage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AXJ64467.1\|1825295_1825526_-	hypothetical protein	D2JLG2	Staphylococcus_phage	1.2e-31	100.0
AXJ64468.1\|1825649_1825937_-	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
AXJ64469.1\|1825983_1826136_-	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
AXJ64470.1\|1826125_1829911_-	hypothetical protein	A0A1P8L6B8	Staphylococcus_phage	0.0e+00	99.8
AXJ64471.1\|1829926_1831411_-\|tail	Phage tail protein	A0A068A242	Staphylococcus_phage	4.6e-294	98.8
AXJ64472.1\|1831407_1835919_-	Murein DD-endopeptidase MepM	A0EX03	Staphylococcus_phage	0.0e+00	88.0
AXJ64473.1\|1835975_1836113_-	hypothetical protein	A0A2I6PDX7	Staphylococcus_phage	3.4e-18	100.0
AXJ64474.1\|1836163_1836514_-	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
AXJ64475.1\|1836830_1837472_-	hypothetical protein	A0A1W6JPP5	Staphylococcus_phage	1.1e-119	100.0
AXJ64476.1\|1837472_1837880_-	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
AXJ64477.1\|1837876_1838281_-	hypothetical protein	A0A1W6JPJ1	Staphylococcus_phage	2.5e-69	100.0
AXJ64478.1\|1838277_1838640_-	hypothetical protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
AXJ64479.1\|1838623_1838920_-	hypothetical protein	A0A2I6PDJ5	Staphylococcus_phage	2.6e-47	100.0
AXJ64480.1\|1838920_1839181_-	hypothetical protein	A0A0H3U504	Staphylococcus_phage	6.4e-42	100.0
AXJ64481.1\|1839200_1840421_-\|capsid	Phage capsid family protein	A0A075LYD8	Staphylococcus_phage	8.6e-230	99.5
AXJ64482.1\|1840368_1841106_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A1W6JPK0	Staphylococcus_phage	1.8e-129	100.0
AXJ64483.1\|1841089_1842253_-\|portal	Phage portal protein	A0A1W6JPQ9	Staphylococcus_phage	1.8e-216	100.0
AXJ64484.1\|1842268_1843930_-	Phage Terminase	Q8LTH3	Staphylococcus_phage	0.0e+00	100.0
AXJ64485.1\|1843926_1844271_-	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
AXJ64486.1\|1844401_1844701_-	HNH endonuclease	A0EWY8	Staphylococcus_phage	4.6e-52	100.0
AXJ64487.1\|1844932_1845349_-	hypothetical protein	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
AXJ64488.1\|1845376_1845577_-	hypothetical protein	D2JLD9	Staphylococcus_phage	5.3e-28	98.5
AXJ64489.1\|1845576_1845726_-	Transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
AXJ64490.1\|1845722_1845929_-	hypothetical protein	A0A2I6PEA2	Staphylococcus_phage	1.1e-17	94.1
AXJ64491.1\|1845925_1846171_-	hypothetical protein	A0A2I6PDW7	Staphylococcus_phage	4.2e-35	97.5
AXJ64492.1\|1846207_1846744_-	dUTPase	Q9MBR0	Staphylococcus_prophage	1.6e-95	100.0
AXJ64493.1\|1846740_1846989_-	hypothetical protein	Q8SDV5	Staphylococcus_phage	4.5e-37	95.1
AXJ64494.1\|1847000_1847243_-	hypothetical protein	A0A2H4PQJ3	Staphylococcus_phage	1.2e-39	98.8
AXJ64495.1\|1847245_1847503_-	hypothetical protein	A0A1X9H067	Staphylococcus_phage	6.3e-42	98.8
AXJ64496.1\|1847502_1847874_-	PVL ORF-50-like family protein	A0A2I6PDG3	Staphylococcus_phage	1.4e-50	91.1
AXJ64497.1\|1847886_1848291_-	Endodeoxyribonuclease RusA	A0A075M042	Staphylococcus_phage	9.3e-72	99.3
AXJ64498.1\|1848299_1848518_-	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
AXJ64499.1\|1848524_1849418_-	Replication initiation and membrane attachment	A0A1P8L6F0	Staphylococcus_phage	3.2e-141	100.0
AXJ64500.1\|1849447_1849918_-	Single-stranded DNA-binding protein ssb	A0A1P8L6D9	Staphylococcus_phage	5.7e-81	100.0
AXJ64501.1\|1849918_1850404_-	Beta-lactamase superfamily domain protein	S4SWA4	Staphylococcus_phage	1.2e-86	99.4
AXJ64502.1\|1850616_1851537_-	recombination and repair protein RecT	A0A2I6PDH5	Staphylococcus_phage	8.6e-166	99.7
AXJ64503.1\|1851538_1853482_-	hypothetical protein	S4V9K6	Staphylococcus_phage	0.0e+00	100.0
AXJ64504.1\|1853490_1853754_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
AXJ64505.1\|1853762_1854023_-	hypothetical protein	A0A1P8L6F5	Staphylococcus_phage	5.2e-44	100.0
AXJ64506.1\|1854027_1854330_-	hypothetical protein	A0A1P8L6F8	Staphylococcus_phage	7.0e-48	100.0
AXJ64507.1\|1854424_1854586_-	hypothetical protein	A0A1P8L6G0	Staphylococcus_phage	1.9e-20	100.0
AXJ64508.1\|1854582_1854906_-	hypothetical protein	A0A075LYF5	Staphylococcus_phage	3.0e-57	100.0
AXJ64509.1\|1854960_1855341_+	hypothetical protein	Q9T1Z5	Staphylococcus_phage	1.2e-68	100.0
AXJ64510.1\|1855327_1855525_-	hypothetical protein	O80075	Staphylococcus_phage	2.5e-30	100.0
AXJ64511.1\|1855540_1856290_-	Phage antirepressor protein KilAC domain protein	A0A1W6JPN2	Staphylococcus_phage	2.0e-136	99.6
AXJ64512.1\|1856346_1856556_+	hypothetical protein	A0A2I6PDR8	Staphylococcus_phage	9.1e-31	100.0
AXJ64513.1\|1856548_1856689_-	hypothetical protein	A0A2I6PDT8	Staphylococcus_phage	1.9e-16	100.0
AXJ64514.1\|1856703_1857150_-	hypothetical protein	A0A1W6JPI3	Staphylococcus_phage	1.9e-78	100.0
AXJ64515.1\|1857162_1857405_-	hypothetical protein	A0A1X9H035	Staphylococcus_phage	1.6e-39	100.0
AXJ64516.1\|1857568_1858285_+	putative HTH-type transcriptional regulator	A0A1X9H038	Staphylococcus_phage	5.4e-131	100.0
AXJ64517.1\|1858296_1859151_+	HIRAN domain protein	A0A1X9H037	Staphylococcus_phage	7.3e-151	100.0
AXJ64518.1\|1859224_1859371_+	hypothetical protein	A0A1X9H032	Staphylococcus_phage	3.3e-19	100.0
AXJ64519.1\|1859367_1859553_+	hypothetical protein	U5U7D6	Staphylococcus_phage	2.3e-25	100.0
AXJ64520.1\|1859622_1859790_+	hypothetical protein	U5U774	Staphylococcus_phage	1.7e-24	100.0
AXJ64521.1\|1859929_1860634_+	PemK-like protein	U5U4R0	Staphylococcus_phage	4.6e-127	100.0
AXJ64522.1\|1860827_1861865_+	Tyrosine recombinase XerC	A0A1X9H022	Staphylococcus_phage	2.6e-179	100.0
AXJ64523.1\|1861921_1862746_+	Phospholipase C precursor	A0A1P8L6H7	Staphylococcus_phage	6.8e-162	100.0
AXJ64524.1\|1862983_1864000_-	putative leukocidin-like protein 1 precursor	A0A1X9IGW5	Staphylococcus_phage	6.7e-26	30.2
AXJ64525.1\|1864021_1865077_-	putative leukocidin-like protein 2 precursor	A0A1X9IGW5	Staphylococcus_phage	2.8e-35	34.3
AXJ64526.1\|1865333_1866506_-	Transposase, Mutator family	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0

DBSCAN-SWA_5

1983018 : 1999980

Staphylococcus_phage(81.25%)

integrase

attL 1991196:1991211|attR 1998594:1998609

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXJ64635.1\|1983018_1984191_-	Transposase, Mutator family	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
AXJ64636.1\|1984276_1984627_-	hypothetical protein	NA	NA	NA	NA
AXJ64637.1\|1984932_1985373_-	preprotein translocase subunit SecB	NA	NA	NA	NA
AXJ64638.1\|1985372_1985669_-	hypothetical protein	NA	NA	NA	NA
AXJ64639.1\|1985689_1986262_-	hypothetical protein	NA	NA	NA	NA
AXJ64640.1\|1986476_1987046_-	Terminase small subunit	Q4ZE85	Staphylococcus_phage	3.5e-101	98.4
AXJ64641.1\|1987042_1987384_-	hypothetical protein	A0A1W6JQM3	Staphylococcus_phage	1.7e-58	100.0
AXJ64642.1\|1987386_1987914_-	hypothetical protein	A0A1W6JQH7	Staphylococcus_phage	1.7e-86	96.6
AXJ64643.1\|1987964_1988183_-	hypothetical protein	NA	NA	NA	NA
AXJ64644.1\|1988200_1988779_-	hypothetical protein	A0A2H4JBG0	uncultured_Caudovirales_phage	4.8e-29	38.9
AXJ64645.1\|1988790_1989132_-	hypothetical protein	Q4ZE66	Staphylococcus_phage	4.2e-57	98.2
AXJ64646.1\|1989581_1990223_-	hypothetical protein	Q4ZE67	Staphylococcus_phage	2.1e-110	92.5
AXJ64647.1\|1990224_1990497_-	hypothetical protein	Q4ZE68	Staphylococcus_phage	3.2e-44	100.0
AXJ64648.1\|1990483_1991287_-	hypothetical protein	Q4ZE69	Staphylococcus_phage	3.1e-151	97.0
1991196:1991211	attL	NA	NA	NA	NA
AXJ64649.1\|1991462_1993079_-	hypothetical protein	A0A1W6JPF4	Staphylococcus_phage	3.0e-246	78.1
AXJ64650.1\|1993123_1993447_-	hypothetical protein	A0A1W6JQH0	Staphylococcus_phage	2.6e-40	93.3
AXJ64651.1\|1993447_1993831_-	hypothetical protein	A0A1W6JQI7	Staphylococcus_phage	3.3e-63	96.9
AXJ64652.1\|1993832_1994036_-	hypothetical protein	A0A1W6JQF4	Staphylococcus_phage	2.0e-30	98.5
AXJ64653.1\|1994002_1994176_-	hypothetical protein	NA	NA	NA	NA
AXJ64654.1\|1994172_1994400_-	helix-turn-helix protein	NA	NA	NA	NA
AXJ64655.1\|1994435_1994642_-	hypothetical protein	NA	NA	NA	NA
AXJ64656.1\|1994862_1995447_+	hypothetical protein	NA	NA	NA	NA
AXJ64657.1\|1995452_1996559_+\|integrase	Putative prophage phiRv2 integrase	H0UST3	Bacillus_phage	5.9e-76	44.2
AXJ64658.1\|1997121_1997586_-	SsrA-binding protein	W5RAM5	Staphylococcus_phage	1.6e-80	98.7
AXJ64659.1\|1997607_1999980_-	Ribonuclease R	Q0GXV6	Lactococcus_phage	4.3e-92	38.8
1998594:1998609	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2050832 : 2064495

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXJ64704.1\|2050832_2051594_-	putative siderophore transport system ATP-binding protein YusV	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.5e-18	31.6
AXJ64705.1\|2051590_2052547_-	Iron-uptake system permease protein FeuC	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AXJ64706.1\|2052533_2053547_-	Fe(3+) dicitrate transport system permease protein FecD	A0A2H4IY97	uncultured_Caudovirales_phage	2.2e-138	78.0
AXJ64707.1\|2053879_2054851_-	Ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AXJ64708.1\|2054968_2057074_-	Ribonucleoside-diphosphate reductase subunit alpha 2	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AXJ64709.1\|2057036_2057435_-	ribonucleotide reductase stimulatory protein	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AXJ64710.1\|2058235_2059102_+	EamA-like transporter family protein	NA	NA	NA	NA
AXJ64711.1\|2059121_2059622_+	NADPH-dependent 7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AXJ64712.1\|2059962_2061468_+	Di-/tripeptide transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AXJ64713.1\|2061594_2063199_-	Transposase DDE domain protein	A0ZS58	Staphylococcus_virus	1.1e-128	44.4
AXJ64714.1\|2063577_2064495_+	Putative lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.0

DBSCAN-SWA_7

2079284 : 2087105

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXJ64725.1\|2079284_2080436_-	Aminodeoxychorismate synthase component 1	S4VNU7	Pandoravirus	6.0e-23	35.7
AXJ64726.1\|2080419_2081013_-	Anthranilate synthase component 2	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
AXJ64727.1\|2081363_2082032_+	7-cyano-7-deazaguanine synthase	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AXJ64728.1\|2082033_2082453_+	6-carboxy-5,6,7,8-tetrahydropterin synthase	S4U060	uncultured_phage	6.3e-07	28.7
AXJ64729.1\|2082456_2083170_+	7-carboxy-7-deazaguanine synthase	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AXJ64730.1\|2083268_2083853_+	hypothetical protein	NA	NA	NA	NA
AXJ64731.1\|2084132_2084573_+	Electron transfer DM13	NA	NA	NA	NA
AXJ64732.1\|2084915_2085389_+	DoxX	NA	NA	NA	NA
AXJ64733.1\|2085363_2086050_+	Response regulator SaeR	NA	NA	NA	NA
AXJ64734.1\|2086049_2087105_+	Histidine protein kinase SaeS	A0A1V0SGX0	Hokovirus	3.6e-14	29.8

DBSCAN-SWA_8

2436880 : 2454134

Staphylococcus_phage(76.19%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXJ65046.1\|2436880_2438053_-	Transposase, Mutator family	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
AXJ65047.1\|2438366_2438879_-	hypothetical protein	Q4ZE83	Staphylococcus_phage	1.4e-69	100.0
AXJ65048.1\|2438996_2439398_-	hypothetical protein	A0A2H4J577	uncultured_Caudovirales_phage	5.1e-22	59.1
AXJ65049.1\|2439575_2440544_-	Abi-like protein	A0A0H4U080	Erysipelothrix_phage	2.7e-24	27.3
AXJ65050.1\|2440820_2441390_-	Terminase small subunit	Q4ZE85	Staphylococcus_phage	4.6e-101	98.4
AXJ65051.1\|2441386_2441728_-	hypothetical protein	Q4ZE86	Staphylococcus_phage	1.1e-57	98.2
AXJ65052.1\|2441730_2442258_-	hypothetical protein	Q4ZE87	Staphylococcus_phage	2.0e-90	99.4
AXJ65053.1\|2442310_2442964_-	hypothetical protein	Q4ZE82	Staphylococcus_phage	7.6e-116	99.5
AXJ65054.1\|2442994_2443339_-	hypothetical protein	Q4ZE66	Staphylococcus_phage	1.3e-50	91.7
AXJ65055.1\|2444046_2444688_-	hypothetical protein	Q4ZE67	Staphylococcus_phage	2.5e-111	93.4
AXJ65056.1\|2444689_2444953_-	hypothetical protein	NA	NA	NA	NA
AXJ65057.1\|2444954_2445311_-	hypothetical protein	A0A2H4JBD4	uncultured_Caudovirales_phage	3.0e-50	78.8
AXJ65058.1\|2445553_2446924_-	hypothetical protein	A0A2H4JBE3	uncultured_Caudovirales_phage	2.4e-257	95.0
AXJ65059.1\|2446935_2447805_-	hypothetical protein	A0A2H4JEH3	uncultured_Caudovirales_phage	1.0e-131	76.1
AXJ65060.1\|2447869_2448196_-	hypothetical protein	Q4ZE75	Staphylococcus_phage	3.5e-53	96.3
AXJ65061.1\|2448196_2448580_-	hypothetical protein	A0A1W6JQI7	Staphylococcus_phage	4.8e-62	96.1
AXJ65062.1\|2448581_2448785_-	hypothetical protein	A0A1W6JQF4	Staphylococcus_phage	2.0e-30	98.5
AXJ65063.1\|2448751_2448925_-	hypothetical protein	NA	NA	NA	NA
AXJ65064.1\|2448936_2449209_-	hypothetical protein	Q4ZE77	Staphylococcus_phage	5.0e-45	97.8
AXJ65065.1\|2449209_2449374_-	Helix-turn-helix domain protein	NA	NA	NA	NA
AXJ65066.1\|2449522_2450146_+	Helix-turn-helix domain protein	NA	NA	NA	NA
AXJ65067.1\|2450306_2451521_+	Tyrosine recombinase XerD	Q4ZE80	Staphylococcus_phage	3.3e-221	97.3
AXJ65068.1\|2451633_2452353_+	PemK-like protein	Q4ZE81	Staphylococcus_phage	3.7e-23	29.8
AXJ65069.1\|2452584_2452827_-	30S ribosomal protein S18	NA	NA	NA	NA
AXJ65070.1\|2452878_2453382_-	Single-stranded DNA-binding protein ssb	A0A1W6JPL9	Staphylococcus_phage	1.2e-60	74.7
AXJ65071.1\|2453402_2453699_-	30S ribosomal protein S6	NA	NA	NA	NA
AXJ65072.1\|2453942_2454134_+	hypothetical protein	U3PCX8	Staphylococcus_phage	1.1e-22	80.0

DBSCAN-SWA_9

2633225 : 2641841

Staphylococcus_phage(66.67%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXJ65229.1\|2633225_2634818_+	Glutathione import ATP-binding protein GsiA	G9BWD6	Planktothrix_phage	4.1e-22	33.6
AXJ65230.1\|2635139_2636312_-	Transposase, Mutator family	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
AXJ65231.1\|2636659_2636857_-	anaerobic benzoate catabolism transcriptional regulator	A0A1V0E021	Clostridioides_phage	2.1e-05	43.3
AXJ65232.1\|2636859_2637036_-	hypothetical protein	NA	NA	NA	NA
AXJ65233.1\|2637022_2637745_-\|holin	Choline transport ATP-binding protein OpuBA	A0A2H4PQG7	Staphylococcus_phage	4.1e-22	34.8
AXJ65234.1\|2637756_2638200_-	hypothetical protein	NA	NA	NA	NA
AXJ65235.1\|2638258_2639320_-	hypothetical protein	NA	NA	NA	NA
AXJ65236.1\|2639338_2640511_+	Transposase, Mutator family	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
AXJ65237.1\|2640668_2641841_+	Transposase, Mutator family	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0

DBSCAN-SWA_10

2750204 : 2760558

Streptococcus_phage(80.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXJ65334.1\|2750204_2751809_+	Transposase DDE domain protein	A0ZS58	Staphylococcus_virus	1.1e-128	44.4
AXJ65335.1\|2751935_2752181_+	hypothetical protein	NA	NA	NA	NA
AXJ65336.1\|2752283_2753153_+	Nucleotidyltransferase domain protein	A0A1X9I6C9	Streptococcus_phage	4.3e-159	95.8
AXJ65337.1\|2753133_2753868_+	putative methyltransferase YcgJ	A0A1X9I6N4	Streptococcus_phage	1.5e-141	100.0
AXJ65338.1\|2753900_2754809_+	Aminoglycoside 6-adenylyltransferase	E4ZFP8	Streptococcus_phage	2.8e-177	100.0
AXJ65339.1\|2754805_2755348_+	TDP-fucosamine acetyltransferase	A0A1B0RXL7	Streptococcus_phage	8.9e-94	100.0
AXJ65340.1\|2755440_2756235_+	Aminoglycoside 3'-phosphotransferase	E4ZFP6	Streptococcus_phage	2.3e-154	100.0
AXJ65341.1\|2756510_2757083_+	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	A0A1B0RXM1	Streptococcus_phage	5.5e-102	99.5
AXJ65342.1\|2757106_2757463_+	hypothetical protein	A0A1B0RXM3	Streptococcus_phage	4.2e-60	99.2
AXJ65343.1\|2757573_2758233_+	5-amino-6-(5-phosphoribosylamino)uracil reductase	A0A1B0RXM8	Streptococcus_phage	3.1e-125	100.0
AXJ65344.1\|2758953_2760558_-	Transposase DDE domain protein	A0ZS58	Staphylococcus_virus	1.1e-128	44.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP022904

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection