CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP031130	Staphylococcus aureus strain F17SA003 chromosome, complete genome	7 crisprs	cas3,DEDDh,DinG,csa3,WYL	3	3	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031130_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031130_2

355487-355588

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031130_2

>merge|CP031130|2|355487-355588|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>CP031130|2|2|355487-355588|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP031130.1\|AXG02538.1\|349803_351327_-\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
CP031130.1\|AXG02544.1\|355604_356561_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
CP031130.1\|AXG02535.1\|346084_346666_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
CP031130.1\|AXG02551.1\|363831_364938_+\|Abi-family-protein	unknown	unknown	gnl\|CDD\|377910
CP031130.1\|AXG02537.1\|347370_347997_-\|NDxxF-motif-lipoprotein	unknown	unknown	gnl\|CDD\|380196
CP031130.1\|AXG02553.1\|365732_366125_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG02542.1\|354711_354810_+\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG02552.1\|365384_365567_+\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG02547.1\|358403_358982_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
CP031130.1\|AXG02539.1\|351342_351912_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
CP031130.1\|AXG02550.1\|361778_363320_+\|GMP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|234614
CP031130.1\|AXG04859.1\|348069_348348_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG02549.1\|360287_361754_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
CP031130.1\|AXG02545.1\|356678_357341_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG02536.1\|346731_347115_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG02541.1\|353238_354627_-\|L-cystine-transporter	unknown	unknown	gnl\|CDD\|224736
CP031130.1\|AXG02543.1\|355020_355278_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG02548.1\|358981_360250_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
CP031130.1\|AXG02540.1\|352403_353159_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
CP031130.1\|AXG02546.1\|357483_357891_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584

Protein	Function_ID	Function_description	E-value
CP031130.1\|AXG02538.1\|349803_351327_-\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
CP031130.1\|AXG02544.1\|355604_356561_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00304381
CP031130.1\|AXG02535.1\|346084_346666_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	1.30018e-49
CP031130.1\|AXG02537.1\|347370_347997_-\|NDxxF-motif-lipoprotein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.15385e-71
CP031130.1\|AXG02547.1\|358403_358982_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	9.01486e-119
CP031130.1\|AXG02539.1\|351342_351912_-\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124
CP031130.1\|AXG02550.1\|361778_363320_+\|GMP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
CP031130.1\|AXG02549.1\|360287_361754_+\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
CP031130.1\|AXG02541.1\|353238_354627_-\|L-cystine-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
CP031130.1\|AXG02551.1\|363831_364938_+\|Abi-family-protein	gnl\|CDD\|377910	pfam07751, Abi_2, Abi-like protein. This family, found in various bacterial species, contains sequences that are similar to the Abi group of proteins, which are involved in bacteriophage resistance mediated by abortive infection in Lactococcus species. The proteins are thought to have helix-turn-helix motifs, found in many DNA-binding proteins, allowing them to perform their function.	2.0112e-23
CP031130.1\|AXG02548.1\|358981_360250_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	5.28569e-170
CP031130.1\|AXG02540.1\|352403_353159_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	5.03864e-88
CP031130.1\|AXG02546.1\|357483_357891_-\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.17298e-12

>CP031130.1|AXG02543.1|355020_355278_-|hypothetical-protein
MLVTDESHKCTLIFTFTTNAFLLKQKYLFTVAFELPPAHTNTQKMLILIRQNFLQRVCSKRLFKVDHLLSFHSINMRLAIFIKPP
>CP031130.1|AXG02542.1|354711_354810_+|hypothetical-protein
MQLNVNMMKFDRWHKGICKQIVLNLVEKGEKG
>CP031130.1|AXG02541.1|353238_354627_-|L-cystine-transporter
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLVYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKSAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLVILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFESNDNAALTSH
>CP031130.1|AXG02540.1|352403_353159_+|NADPH-dependent-oxidoreductase
MSEHVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>CP031130.1|AXG02539.1|351342_351912_-|peroxiredoxin
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>CP031130.1|AXG02538.1|349803_351327_-|alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDEKSKELKELLTEISDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKNLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMSTGEEHLLNLDGIFVQIGLLPNTSWLKDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>CP031130.1|AXG04859.1|348069_348348_-|hypothetical-protein
MKSDQAIKEFTSYLRKQINMKNDIEKEKYVNEIIMLLRTIPTSKLIQPIMQLFIDNAILNNVQNDALLIEKATHARNHLRLWSLQGHRDIPN
>CP031130.1|AXG02537.1|347370_347997_-|NDxxF-motif-lipoprotein
MKKRLLLSTFLASALILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>CP031130.1|AXG02536.1|346731_347115_-|hypothetical-protein
MKVRITFIILSILSTIVCLFLAAMHPTGPSTVTFEQPYLFTLNIIIMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFTSTIITLAIGGKSVDKNDSH
>CP031130.1|AXG02535.1|346084_346666_+|histidine-phosphatase-family-protein
MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLCDYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISANPKYEKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQQDDIVIVAHQVVIRCLMVYFNNVSREEAVDLKVENCKPYIIE
>CP031130.1|AXG02544.1|355604_356561_-|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLFGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKVLAESTNKVEKNAVTEDKADSKDSKVAGVTTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQSKNENAAETSNKEATVDADAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL
>CP031130.1|AXG02545.1|356678_357341_-|hypothetical-protein
MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEEMDLRKPF
>CP031130.1|AXG02546.1|357483_357891_-|hypothetical-protein
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHKEVQEHNSAYEEIDITHFAEASKGPKA
>CP031130.1|AXG02547.1|358403_358982_+|xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKNKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVGEE
>CP031130.1|AXG02548.1|358981_360250_+|purine-permease
MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILVLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLIICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVK
>CP031130.1|AXG02549.1|360287_361754_+|IMP-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>CP031130.1|AXG02550.1|361778_363320_+|GMP-synthase-(glutamine-hydrolyzing)
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCKGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>CP031130.1|AXG02551.1|363831_364938_+|Abi-family-protein
MDKSLEINLKELESIMYKEKVIDVKEYDNLKVTFETLNDAPKSEIPTPFTIEQMLYKLETKNLYFPEIKSKEKCVELLHSVGYYNLKHFMYNEFGKDEPKNFDEVYILYKFDRYLLKQLFSLVNMLETHIRNIILEVYMLEIEYNNKPSTLFYLDKDLYFEKVNDEYKYSAKKLKEFNRLQNVFWRAIEKKKSNDNVKHNIKKYNIIPAWVLFQNFSFGDLSTFYRTTLPTYRNKVSKRIENLIEKNTGISIKLPEKLLCAWLNSIRFLRNRIAHTDIIYGINFTNTCAKHHSDEEMYVNIEKYKYQQRLVTFLLAMKKIFMSMPENNIIEWNETLTKIENKCSEHNFIKLSRLGVIENNLSYFKITK
>CP031130.1|AXG02552.1|365384_365567_+|hypothetical-protein
MFLIWATSCYEMIGVIYVEIGVPISLCWGPAVNYCQYKIVEPTILILCPRLGFLRLVKYL
>CP031130.1|AXG02553.1|365732_366125_-|hypothetical-protein
MLEDNGDIRLLYQSIEELASVLGQSQFETKTVSLIFVQMDLRYSVFEKVQTDFMKYLAHKNSDEIKYIDLIKIIENALPEDKELSINVINSIIIGFANNYYPILQSLVPEIQSSYGITINKNFNIDSIDF

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Crispr_ID: CP031130_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031130_3

755510-755587

Unclear

Consensus_repeat	Method
TTCTTTATGTTGGGGCCCCGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031130_3

>merge|CP031130|3|755510-755587|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACTTGCATTGTTTGTAGAATTTCTTTTCGAAATTCTTTATGTTGGGGCCCCGCCA

>CP031130|3|3|755510-755587|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCA	ACTTGCATTGTTTGTAGAATTTCTTTTCGAAA
TTCTTTATGTTGGGGCCCCGCCA

Protein	Signature genes	Signature genes Name	Protein_function
CP031130.1\|AXG02917.1\|759610_760546_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
CP031130.1\|AXG02919.1\|762452_763448_+\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
CP031130.1\|AXG02904.1\|743851_746383_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
CP031130.1\|AXG02913.1\|755826_756759_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
CP031130.1\|AXG02918.1\|761544_762456_+\|RNase-adaptor-protein-RapZ	unknown	unknown	gnl\|CDD\|224574
CP031130.1\|AXG02912.1\|752374_755221_+\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
CP031130.1\|AXG02907.1\|747961_748069_+\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG02911.1\|750381_752367_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
CP031130.1\|AXG02903.1\|742865_743438_+\|ribosomal-subunit-interface-protein	unknown	unknown	gnl\|CDD\|224461
CP031130.1\|AXG02909.1\|749229_749880_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|378993
CP031130.1\|AXG02905.1\|746424_746529_+\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG02921.1\|765066_765654_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
CP031130.1\|AXG02916.1\|758104_759544_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276808
CP031130.1\|AXG04874.1\|760975_761344_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG02908.1\|748216_749056_+\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
CP031130.1\|AXG02914.1\|756764_757604_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
CP031130.1\|AXG02915.1\|757611_758097_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|100053
CP031130.1\|AXG02920.1\|763558_764503_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
CP031130.1\|AXG02910.1\|749876_750113_+\|DUF2198-family-protein	unknown	unknown	gnl\|CDD\|227234
CP031130.1\|AXG02906.1\|746697_747808_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799

Protein	Function_ID	Function_description	E-value
CP031130.1\|AXG02917.1\|759610_760546_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	5.91243e-154
CP031130.1\|AXG02919.1\|762452_763448_+\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
CP031130.1\|AXG02904.1\|743851_746383_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
CP031130.1\|AXG02913.1\|755826_756759_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP031130.1\|AXG02918.1\|761544_762456_+\|RNase-adaptor-protein-RapZ	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
CP031130.1\|AXG02912.1\|752374_755221_+\|excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP031130.1\|AXG02908.1\|748216_749056_+\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.82721e-42
CP031130.1\|AXG02911.1\|750381_752367_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP031130.1\|AXG02903.1\|742865_743438_+\|ribosomal-subunit-interface-protein	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37
CP031130.1\|AXG02909.1\|749229_749880_+\|HD-domain-containing-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
CP031130.1\|AXG02921.1\|765066_765654_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP031130.1\|AXG02916.1\|758104_759544_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.14043e-06
CP031130.1\|AXG02914.1\|756764_757604_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	4.81145e-120
CP031130.1\|AXG02915.1\|757611_758097_+\|acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	5.56005e-29
CP031130.1\|AXG02920.1\|763558_764503_+\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
CP031130.1\|AXG02910.1\|749876_750113_+\|DUF2198-family-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	5.48706e-34
CP031130.1\|AXG02906.1\|746697_747808_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0

>CP031130.1|AXG02912.1|752374_755221_+|excinuclease-ABC-subunit-A
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>CP031130.1|AXG02911.1|750381_752367_+|excinuclease-ABC-subunit-UvrB
MVEHYPFKIHSDFEPQGDQPQAIEEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYRTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQIRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>CP031130.1|AXG02910.1|749876_750113_+|DUF2198-family-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIVFIDVVSLLAGYLIIDQLEFHKHQDEDR
>CP031130.1|AXG02909.1|749229_749880_+|HD-domain-containing-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>CP031130.1|AXG02908.1|748216_749056_+|CHAP-domain-containing-protein
MKKTLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKTPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>CP031130.1|AXG02907.1|747961_748069_+|hypothetical-protein
MYLLKQHMQCAFSNITYGDFQGIELIVENVLNYMV
>CP031130.1|AXG02906.1|746697_747808_+|peptide-chain-release-factor-2
MELSEIKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>CP031130.1|AXG02905.1|746424_746529_+|hypothetical-protein
MLWEESFYFTSVKYFKKCEEVVKRCYVLSFKKSV
>CP031130.1|AXG02904.1|743851_746383_+|preprotein-translocase-subunit-SecA
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>CP031130.1|AXG02903.1|742865_743438_+|ribosomal-subunit-interface-protein
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ
>CP031130.1|AXG02913.1|755826_756759_+|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP031130.1|AXG02914.1|756764_757604_+|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYVENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>CP031130.1|AXG02915.1|757611_758097_+|acetyltransferase
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLVGANSIILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP031130.1|AXG02916.1|758104_759544_+|tetratricopeptide-repeat-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP031130.1|AXG02917.1|759610_760546_+|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLKDQA
>CP031130.1|AXG04874.1|760975_761344_-|hypothetical-protein
MRLQQAFFNSSQGPQHREIGFPISTDNASWGVGPNTENFEKKFYRQCKLGCGPQHREFRKEILQAMQVGVWAPTQRISKRNSTGNASWGVGPNTENFEKKFYRQCELGCGPQHRSLRKVSLQ
>CP031130.1|AXG02918.1|761544_762456_+|RNase-adaptor-protein-RapZ
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP031130.1|AXG02919.1|762452_763448_+|YvcK-family-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP031130.1|AXG02920.1|763558_764503_+|DNA-binding-protein-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP031130.1|AXG02921.1|765066_765654_+|ATP-dependent-Clp-protease-proteolytic-subunit
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK

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Crispr_ID: CP031130_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031130_4

1093481-1093573

Orphan

Consensus_repeat	Method
TCATAATGATTAAAAATCAAAGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031130_4

>merge|CP031130|4|1093481-1093573|CRISPRCasFinder
TCATAATGATTAAAAATCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCATCACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGG

>CP031130|4|4|1093481-1093573|CRISPRCasFinder
TCATAATGATTAAAAATCAAAGAGG	AACAGCGGAATACAGATGATGCTTCGCATCACTGCATAAAAGC
CTCTAATGATTAAAAATCAAAGAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP031130.1\|AXG03257.1\|1088202_1088310_+\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG03265.1\|1095733_1097446_+\|DNA-polymerase/3'-5'-exonuclease-PolX	unknown	unknown	gnl\|CDD\|236311
CP031130.1\|AXG03252.1\|1084098_1085175_+\|heme-ABC-transporter-permease	unknown	unknown	unknown
CP031130.1\|AXG03272.1\|1105149_1105965_+\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|181515
CP031130.1\|AXG03263.1\|1094872_1095139_+\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|172616
CP031130.1\|AXG03261.1\|1093181_1093310_+\|acyltransferase	unknown	unknown	unknown
CP031130.1\|AXG03270.1\|1102717_1103332_+\|succinate-dehydrogenase	unknown	unknown	gnl\|CDD\|239577
CP031130.1\|AXG03259.1\|1089669_1090728_+\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
CP031130.1\|AXG03258.1\|1088549_1089290_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640
CP031130.1\|AXG03256.1\|1087842_1088166_+\|staphylobilin-forming-heme-oxygenase-IsdG	unknown	unknown	gnl\|CDD\|139480
CP031130.1\|AXG03264.1\|1095139_1095661_+\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|224205
CP031130.1\|AXG03267.1\|1099976_1100291_+\|thiol-reductase-thioredoxin	unknown	unknown	gnl\|CDD\|200072
CP031130.1\|AXG03255.1\|1087089_1087824_+\|SrtB-family-sortase	unknown	unknown	gnl\|CDD\|226898
CP031130.1\|AXG03268.1\|1100353_1100449_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG03253.1\|1085171_1086050_+\|heme-uptake-system-protein-IsdE	unknown	unknown	gnl\|CDD\|274706
CP031130.1\|AXG03269.1\|1100613_1102395_+\|excinuclease-ABC-subunit-C	unknown	unknown	gnl\|CDD\|234792
CP031130.1\|AXG03271.1\|1103383_1105150_+\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236319
CP031130.1\|AXG03266.1\|1097455_1099804_+\|endonuclease-MutS2	unknown	unknown	gnl\|CDD\|234750
CP031130.1\|AXG03254.1\|1086059_1087028_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223682
CP031130.1\|AXG03260.1\|1090727_1093130_+\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804

Protein	Function_ID	Function_description	E-value
CP031130.1\|AXG03267.1\|1099976_1100291_+\|thiol-reductase-thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	3.26685e-48
CP031130.1\|AXG03265.1\|1095733_1097446_+\|DNA-polymerase/3'-5'-exonuclease-PolX	gnl\|CDD\|236311	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX.	0
CP031130.1\|AXG03272.1\|1105149_1105965_+\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|181515	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	0
CP031130.1\|AXG03263.1\|1094872_1095139_+\|cell-division-protein-ZapA	gnl\|CDD\|172616	PRK14126, PRK14126, cell division protein ZapA; Provisional.	1.04877e-21
CP031130.1\|AXG03270.1\|1102717_1103332_+\|succinate-dehydrogenase	gnl\|CDD\|239577	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Bacillus subtilis SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside on the transmembrane subunit. The transmembrane subunit of Bacillus subtilis SQR is also called Sdh cytochrome b558 subunit. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron acceptor (quinone). The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	2.37018e-87
CP031130.1\|AXG03259.1\|1089669_1090728_+\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
CP031130.1\|AXG03258.1\|1088549_1089290_+\|RNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	2.00285e-77
CP031130.1\|AXG03256.1\|1087842_1088166_+\|staphylobilin-forming-heme-oxygenase-IsdG	gnl\|CDD\|139480	PRK13312, PRK13312, staphylobilin-forming heme oxygenase IsdG.	3.35893e-67
CP031130.1\|AXG03264.1\|1095139_1095661_+\|CvpA-family-protein	gnl\|CDD\|224205	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only].	4.13485e-29
CP031130.1\|AXG03255.1\|1087089_1087824_+\|SrtB-family-sortase	gnl\|CDD\|226898	COG4509, COG4509, Uncharacterized protein conserved in bacteria [Function unknown].	2.78558e-128
CP031130.1\|AXG03253.1\|1085171_1086050_+\|heme-uptake-system-protein-IsdE	gnl\|CDD\|274706	TIGR03659, heme_ABC_transporter_heme-binding_protein_isdE, heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.	9.77537e-156
CP031130.1\|AXG03269.1\|1100613_1102395_+\|excinuclease-ABC-subunit-C	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
CP031130.1\|AXG03271.1\|1103383_1105150_+\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236319	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
CP031130.1\|AXG03266.1\|1097455_1099804_+\|endonuclease-MutS2	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0
CP031130.1\|AXG03254.1\|1086059_1087028_+\|iron-ABC-transporter-permease	gnl\|CDD\|223682	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism].	1.25627e-60
CP031130.1\|AXG03260.1\|1090727_1093130_+\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0

>CP031130.1|AXG03261.1|1093181_1093310_+|acyltransferase
MGVYFWVHQLGSNAFKKSKRNSGIQMMLCTTAYKVILMSKAN
>CP031130.1|AXG03260.1|1090727_1093130_+|phenylalanine--tRNA-ligase-subunit-beta
MLISNEWLKEYVTIDDSVSNLAERITRTGIEVDDLIDYTKDIKNLVVGFVKSKEKHPDADKLNVCQVDIGEDEPVQIVCGAPNVDAGQYVIVAKVGGRLPGGIKIKRAKLRGERSEGMICSLQEIGISSNYIPKSFESGIYVFSEAQVPGTDALQALYLDDQVMEFDLTPNRADALSMIGTAYEVAALYNTKMTKPDTTSNELELSANNELTVTIENEDKVPYYSARVVHDVTIEPSPIWMQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDAIGSQQIVVRQANEGEKMTTLDGTERELLTSDIVITNGQTPIALAGVMGGDFSEVKEQTSNIVIEGAIFDPVSIRHTSRRLNLRSESSSRFEKGIATEFVDEAVDRACYLLQTYANGKVLKDRVSSGELGAFITPIDITADKINRTIGFDLSQNDIVTIFNQLGFDTEINDDVITVQVPSRRKDITIKEDLIEEVARIYGYDDIPSTLPVFEKVTSGQLTDRQYKTRMVKEVLEGAGLDQAITYSLVSKEDATAFSMQQRQTIDLLMPMSEAHASLRQSLLPHLIEAASYNVARKNKDVKLFEIGNVFFANGEGELPDQVEYLSGILTGDYVVNQWQGKKETVDFYLAKGIVDRVSEKLNLEFSYRRADIDGLHPGRTAEILLENKVVGFIGELHPTLAADNDLKRTYVFELNFDALMAVSVGYINYQPIPRFPGMSRDIALEVDQNIPAADLLSTIHAHGGNILKDTLVFDVYQGEHLEKGKKSIAIRLNYLDTEETLTDERVSKVQAEIEAALIEHGAVIR
>CP031130.1|AXG03259.1|1089669_1090728_+|phenylalanine--tRNA-ligase-subunit-alpha
MSEQQTMSELKQQALVDINEANDERALQEVKVKYLGKKGSVSGLMKLMKDLPNEEKPAFGQKVNELRQTIQNELDERQQMLVKEKLNKQLAEETIDVSLPGRHIEIGSKHPLTRTIEEIEDLFLGLGYEIVNGYEVEQDHYNFEMLNLPKSHPARDMQDSFYITDEILLRTHTSPVQARTMESRHGQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNVKMSDLKGTLELLAKKLFGADREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFDSSEYSGFAFGMGPDRIAMLKYGIEDIRHFYTNDVRFLDQFKAVEDRGDM
>CP031130.1|AXG03258.1|1088549_1089290_+|RNA-methyltransferase
MEQITSAQNNRIKQANKLKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKVAESLSGTVTPQGFFAIIEKPHYDISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVMIQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLKG
>CP031130.1|AXG03257.1|1088202_1088310_+|hypothetical-protein
MVLLAFVTTIHDTDDGRFFNEHKHANNKLLKHSLI
>CP031130.1|AXG03256.1|1087842_1088166_+|staphylobilin-forming-heme-oxygenase-IsdG
MKFMAENRLTLTKGTAKDIIERFYTRHGIETLEGFDGMFVTQTLEQEDFDEVKILTVWKSKQAFTDWLKSDVFKAAHKHVRSKNEDESSPIINNKVITYDIGYSYMK
>CP031130.1|AXG03255.1|1087089_1087824_+|SrtB-family-sortase
MRMKRFLTIVQILLVVIIIIFGYKIVQTYIEDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKIIKVS
>CP031130.1|AXG03254.1|1086059_1087028_+|iron-ABC-transporter-permease
MMIKNKKKLLFLCLLVILIATAYISFVTGTIKLSFNDLFTKFTTGSNEAVDSIIDLRLPRILIALMVGAMLAVSGALLQAALQNPLAEANIIGVSSGALIMRALCMLFIPQLYFYLPLLSFIGGLIPFLIIILLHSKFRFNAVSMILVGVALFVLLNGVLEILTQNPLMKIPQGLTMKIWSDVYILAVSALLGLILTLLLSPKLNLLNLDDIQARSIGFNIDRYRWLTGLLAVFLASATVAIVGQLAFLGIIVPHVVRKLVGGNYRVLIPFSTVIGAWLLLVADLLGRVIQPPLEIPANAILMIVGGPMLICLICQSQRNRI
>CP031130.1|AXG03253.1|1085171_1086050_+|heme-uptake-system-protein-IsdE
MRIIKYLTILVISVVILTSCQSSSSQESTKSGEFRIVPTTVALTMTLDKLDLPIVGKPTSYKTLPNRYKDVPEIGQPMEPNVEAVKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRKAQAKELNDHLNSVKQKIENKAAKQKKHPKVLILMGVPGSYLVATDKSYIGDLVKIAGGENVIKVKDRQYISSNTENLLNINPDIILRLPHGMPEEVKKMFQKEFKQNDIWKHFKAVKNNHVYDLEEVPFGITANVDADKAMTQLYDLFYKDKK
>CP031130.1|AXG03252.1|1084098_1085175_+|heme-ABC-transporter-permease
MRNVKQIATKSIIAIISLGILTYTTMIGSVLADEIKYPSAKFNQPEAKDKTELTTSIFDEKIKENKALELLIFNQENKNVTEEQKLVDEKAQLISDMTGKIYLQVKLKGQIDKEQLVFQNDKNEEFPFVIKDEKDDTIVRILIEQHMDKINMHVKTLAEKKNLDNKEMVYSIHFKEKKVQHDDAKEVPSKHQNQENNQDQLKKDIDDKKDSQKSDTKERRTSLFTEKGLNDIPVQKDKVQQDSNKKIENERPKASGTLKVENSPPTIKKVENNHKEQPKHKDEKSKKEKKKVVEKEKALPAFNRDDDSKNSSQLSSDIKELDEPNHKKQYILFAAGIVLATILLISAHLYSRKRGNQV
>CP031130.1|AXG03263.1|1094872_1095139_+|cell-division-protein-ZapA
MAQFKNKVNVSINDQLFTIVGEDNPEHIRYVAHLVDDKIKELGYKAAGLDTSRKAILTAVNIMHEKVLLEEENRRLKQQIHKLQQREQ
>CP031130.1|AXG03264.1|1095139_1095661_+|CvpA-family-protein
MVIDFIIIIFFVYFVIVGFRRGFWLSMIHLSATIVSLWIASQFYKSIVERLIVFIPYPKTTAFNTTFAFHFNHLQNRFEAIVAFLMITLFCKFILYLIIVTFDKIIAYQNIHIFSRAMGMIVGVFMTIIVLHFTLYLLALYPNEALQHQLKISIVSHSLIFHIPYLSAFTINL
>CP031130.1|AXG03265.1|1095733_1097446_+|DNA-polymerase/3'-5'-exonuclease-PolX
MTKKDVIKLLEQIATYMELKGENTFKISAYRKAAQSLELDERPLDEISDVTELKGIGKGVAEVINDYRETGESQYLQQLQEEVPEGLIPLLKIQGLGSKKIAKLYKELNIVDKASLQVACENGKVSELSGFAKKTEQNILEAVKQLGAKKDRYPIDQMRRLNQEIIDYIDTLNYIDQYSSAGSFRRFKEMSKDLDFIISTDNPKAVQQQLLNIPNKVKEVAVGNTKVSLELAYDDETIGVDFRLIEPSAFYHTLQHFTGSKEHNIRIRQLAKARDEKVSEYGIEQADGTLIQYDSEAKIYEHFNVNFIPPAMREDGSEFDKDLSNIITIDDINGDIHMHTTYSDGAFSIRDMVEANIAKGYKFMVITDHSQSLRVANGLQVERLLRQNEEIKALDKEYSEIDIYSGTEMDILPDGSLDYDDEILAQLDYVIGAIHQSFNQSEEQIMERLANACRNPYVRHIAHPTGRIIGRRDGYKPNIEQLMALAEETNTVLEINANPHRLDLNADIVRKYPNVKLTINTDAHHTNHLDFMNYGVATAQKGFVTKDRVINALSREAFKDFIENNIKLKK
>CP031130.1|AXG03266.1|1097455_1099804_+|endonuclease-MutS2
MRQKTLDVLEFEKIKSLVANETISDLGLEKVNQMMPATNFETVVFQMEETDEIAQIYNKHRLPSLSGLSKVSAFIHRADIGGVLNVSELNLIKRLIQVQNQFKTFYNQLVEEDEGVKYPILDDKMNQLPVLTDLFQQINETCDTYDLYDNASYELQGIRSKISSTNQRIRQNLDRIVKSQANQKKLSDAIVTVRNERNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPSSVVEMNNQISRLRHDEAIEKERILTQLTGYVAADKDALLVAEQVMGQLDFLIAKARYSRSIKGTKPIFKEERTVYLPKAYHPLLNRETVVANTIEFMEDIETVIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLSTFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLVMATTHYPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQAHDDLSKQYQQFQNYEKSLIEEAKEKANQKIKAATKEADDIIKDLRQLREQKGADVKEHELIDKKKRLDDHYEAKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLEIVNDEEAIVQMGIIKMKLPIEDLEKKQKEKVKPTKMVTRQNRQTIKTELDLRGYRYEDALIELDQYLDQAVLSNYEQVYIIHGKGTGALQKGVQQHLKKHKSVSDFRGGMPSEGGFGVTVATLK
>CP031130.1|AXG03267.1|1099976_1100291_+|thiol-reductase-thioredoxin
MAIVKVTDADFDSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL
>CP031130.1|AXG03268.1|1100353_1100449_-|hypothetical-protein
MLDYHLTFIDLLIPPFSSRKQYDDLSFNFLY
>CP031130.1|AXG03269.1|1100613_1102395_+|excinuclease-ABC-subunit-C
MEDYKQRIKNKLNVVPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGAHDAKTTRLVGEIRRFEFIVTSSETESLLLELNLIKQYQPRYNILLKDDKSYPFIKITKEKYPRLLVTRTVKQGTGKYFGPYPNAYSAQETKKLLDRIYPYRKCDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTKEITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGYCVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKEVHVPRNLDKEMIQSVVDTKIVQPARGPKKDMVDLAAHNAKVSLNNKFELISRDESRTIKAIEELGTQMGIQTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIKTVKGPDDYKSMREVVRRRYSRVLNEGLPLPDLIIVDGGKGHMNGVIDVLQNELGLDIPVAGLQKNDKHQTSELLYGASAEIVPLKKNSQAFYLLHRIQDEVHRFAITFHRQTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNIGIPENVAKNLHEQLHK
>CP031130.1|AXG03270.1|1102717_1103332_+|succinate-dehydrogenase
MAQSKNEFYLRRIHSLLGIIPIGAFLVVHLLVNHQATQGAEAFNKASNFMESLPFLIIVEFLFIYIPLLYHGLFGIHIAFTAKENVGHYSIFRNWMFFFQRVSGILTFIFIGIHLWQTRLQKAFYGKEVNYDLMHETLQHPGWAIFYIICIIAVVFHFANGLWSFLVTWGGLQSPKSQRVFTWVSLIVFLVISYIGVTAIIAFM
>CP031130.1|AXG03271.1|1103383_1105150_+|succinate-dehydrogenase-flavoprotein-subunit
MAEKHLIVVGGGLAGLMSTIKAAEKGAHVDLFSVVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPVKAMTEAAPKIIHLLDRMGVMFNRTNEGLLDFRRFGGTLHHRTAYAGATTGQQLLYALDEQVRAFEVDGLVTKYEGWEFLGIVKGDDDSARGIVAQNMTTAEIETFGSDAVIMATGGPGIIFGKTTNSMINTGSAASIVYQQGAIYANGEFIQIHPTAIPGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPDYGNLVPRDIATREIFDVCINQKLGINGENMVYLDLSHKDPHELDVKLGGIIEIYEKFTGDDPRKVPMKIFPAVHYSMGGLYVDYDQMTNIKGLFAAGECDFSQHGGNRLGANSLLSAIYGGTVAGPNAIDYISNIDRSYTDMDESIFEKRKAEEQERFDKLLAMRGTENAYKLHRELGEIMTANVTVVRENEKLLETDKKIVELMKRYEDIDMEDTQTWSNQAVFFTRQLWNMLVLARVITIGAYNRNESRGAHYKPEFPERNDEEWLKTTMASFQGAFEKPQFTYDDVDVSLIPPRKRDYTSKSKGGKK
>CP031130.1|AXG03272.1|1105149_1105965_+|succinate-dehydrogenase-iron-sulfur-subunit
MTEQSVKNTPQHETQSKPKQKTVKLIIKRQDTSDSKPYEETFEIPYRENLNVIACLMEIRRNPVNIKGEKTTPVVWDMNCLEEVCGACSMVINGRARQSCSAIVDQLEQPIRLEPMNTFPVIRDLQVDRSRMFDNLKRMKAWIPIDGTYDLGPGPRMPEKKRQTAYELSKCMTCGVCLEVCPNVTENNKFVGAQAISQVRLFNLHPTGSMTKDERLNALMGTGGLQQCGNSQNCVNACPKGIPLTTSIAAMNRETTFHMFKSFFGSDHEVE

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Crispr_ID: CP031130_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031130_5

1887638-1887719

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCACAACATAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031130_5

>merge|CP031130|5|1887638-1887719|CRISPRCasFinder
TGCAAGTTGGCGGGGCCACAACATAGTGGAATTGGATTCCCAATTTCTACAGACATTGCAAGTTGGCGAGGCCACAACATAG

>CP031130|5|5|1887638-1887719|CRISPRCasFinder
TGCAAGTTGGCGGGGCCACAACATAG	TGGAATTGGATTCCCAATTTCTACAGACAT
TGCAAGTTGGCGAGGCCACAACATAG

Protein	Signature genes	Signature genes Name	Protein_function
CP031130.1\|AXG03985.1\|1885361_1886747_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
CP031130.1\|AXG03984.1\|1884087_1884909_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
CP031130.1\|AXG03989.1\|1888348_1888948_-\|glucosamine-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|223440
CP031130.1\|AXG03995.1\|1903294_1903741_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
CP031130.1\|AXG03983.1\|1882812_1883925_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|226951
CP031130.1\|AXG03988.1\|1888171_1888324_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG03986.1\|1886942_1887338_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG03981.1\|1881347_1881812_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224393
CP031130.1\|AXG03991.1\|1889580_1890708_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
CP031130.1\|AXG03994.1\|1893287_1894349_-\|PTS-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226167
CP031130.1\|AXG03982.1\|1882167_1882791_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP031130.1\|AXG03979.1\|1879631_1879976_-\|YlbF/YmcA-family-competence-regulator	unknown	unknown	gnl\|CDD\|237467
CP031130.1\|AXG03977.1\|1879040_1879139_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG03990.1\|1889105_1889576_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	unknown	unknown	gnl\|CDD\|223297
CP031130.1\|AXG03980.1\|1880044_1881169_-\|DUF445-family-protein	unknown	unknown	gnl\|CDD\|226834
CP031130.1\|AXG03978.1\|1879152_1879359_+\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG03997.1\|1904793_1905249_-\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|224146
CP031130.1\|AXG03996.1\|1903837_1904788_-\|hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240632
CP031130.1\|AXG03992.1\|1890857_1891586_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
CP031130.1\|AXG03993.1\|1891572_1893030_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223836

Protein	Function_ID	Function_description	E-value
CP031130.1\|AXG03985.1\|1885361_1886747_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
CP031130.1\|AXG03984.1\|1884087_1884909_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	3.35529e-78
CP031130.1\|AXG03989.1\|1888348_1888948_-\|glucosamine-6-phosphate-isomerase	gnl\|CDD\|223440	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism].	6.38527e-11
CP031130.1\|AXG03995.1\|1903294_1903741_-\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	6.09298e-56
CP031130.1\|AXG03983.1\|1882812_1883925_-\|GAF-domain-containing-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	7.65897e-57
CP031130.1\|AXG03993.1\|1891572_1893030_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.14709e-98
CP031130.1\|AXG03981.1\|1881347_1881812_-\|transcriptional-regulator	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	5.18868e-15
CP031130.1\|AXG03991.1\|1889580_1890708_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	2.34756e-178
CP031130.1\|AXG03994.1\|1893287_1894349_-\|PTS-transporter-subunit-IIC	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	2.31644e-122
CP031130.1\|AXG03982.1\|1882167_1882791_-\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.11819e-78
CP031130.1\|AXG03979.1\|1879631_1879976_-\|YlbF/YmcA-family-competence-regulator	gnl\|CDD\|237467	PRK13676, PRK13676, YlbF/YmcA family competence regulator.	1.19759e-37
CP031130.1\|AXG03990.1\|1889105_1889576_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	1.70324e-88
CP031130.1\|AXG03980.1\|1880044_1881169_-\|DUF445-family-protein	gnl\|CDD\|226834	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown].	4.6883e-165
CP031130.1\|AXG03997.1\|1904793_1905249_-\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.44283e-68
CP031130.1\|AXG03996.1\|1903837_1904788_-\|hydroxyacid-dehydrogenase	gnl\|CDD\|240632	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family. Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	3.25267e-136
CP031130.1\|AXG03992.1\|1890857_1891586_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.22702e-152

>CP031130.1|AXG03986.1|1886942_1887338_-|hypothetical-protein
MLGKYWIQLLIATVIISLISIKAFPLAIGALYLPVIFKVIKLQLNLSKGLIDDVNAQTFIKSNQSGIVISVICCLLITGILYYTLDGFYASLTGVLGTLVALNPYTTIVSAVLYILTAIATVEATKTKYRN
>CP031130.1|AXG03985.1|1885361_1886747_-|class-II-fumarate-hydratase
MSVRIEHDTFGEIEVPADKYWGAQTERSKRNFPVGKERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQSDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSIIKIGRTHLQDATPIKLGQEISGWRYMLDRCEIMLSESKKHILNLAIGGTAVGTGINAHPEFGDKVAHYISENTGYPFVSSENKFHALTAHDEVVQLHGTLKALAGDLMKIANDVRWLASGPRAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMVAVQVMGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDPH
>CP031130.1|AXG03984.1|1884087_1884909_+|RluA-family-pseudouridine-synthase
MKFKIPENFNDLSLRDIFQQLKVPKKDLHHLNMSKDITINDKPARLMDKVHTGDDVFVPTIDEKSNYVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLDD
>CP031130.1|AXG03983.1|1882812_1883925_-|GAF-domain-containing-protein
MEQRTRLALLKEIAEFLNEETEMYSMTQGALKYLIEGSNFTTGWIFFINSVGEHELVSHVALPQSLTADHCHYIKDGSCWCVKAFNQRRLMKASNIVNCSRINLASKAFPSQNDNITHHATVPLKSGQEQFGILNVASPNTEIYSDEDLELLESVAFQLGSAIKRIYLTDREKEAAKINERNRLARDLHDSVNQMLFSVKLTAHAAYGMSNESIAKQAFKTIEETSQNAVNEMRALIWQLKPVGLEQGLIHALTAYSKLMHIQLNVNVEGLIDLSNEIEENIYRALQECINNVKKHADTNKMDLTLKQMNDILYIDVIDYGQGFEIDNVQIASSHGINNIKQRVKLLRGRVTFHSQPTKGTQIQFTIPIK
>CP031130.1|AXG03982.1|1882167_1882791_-|DNA-binding-response-regulator
MNKVILVDDHYIVRQGLRFLLSTIENIEVLQDFADGETFLEYLKEHEHPDIVLLDLVMPGMNGIEITEYIKAHYPDIKVLVLTSYVDDEHVISAINKGADGYEMKDVEPQQLIETIRRVMNGEKMIHPKAQDVFETVSQKPHYTNKLSKREIEVLREMVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI
>CP031130.1|AXG03981.1|1881347_1881812_-|transcriptional-regulator
MDRQSFTDLIQTKFKMVRIEAGYTQDTMAQTIGLSKKTLVQIEKERVLPNWTTCISICALFRDSEVLNSTFGCDPLEIVQTISRNHCAYPNHAPTSDIYWNNIETRNGYILQSNKVSNIYRVLNPDNQPIFGTSKMREAETYFNRNAKEELVHI
>CP031130.1|AXG03980.1|1880044_1881169_-|DUF445-family-protein
MNALFIIIFMIVVGAIIGGITNVIAIRMLFHPFKPYYIFKFRVPFTPGLIPKRREEIATKIGQVIEEHLLTETLINEKLKSEQSQQAIESMIQQQLQKLTKDQLSIKQITSQIDIDLEQVLQTNGNQYIESQLNNYYTKHQNQTIASLLPNQLVTFLDQHVDNATDLLCDRARNYLSSAKGTQDINDMLDTFFNEKGKLIGMLQMFMTKESIADRIQQELIRLTSHPKARTIVTSLITNEYQTFKDKPLNELLDASQFNEIAENLSVYITTYASKQANKPVVTLMPQFVDYLEGQLSSKLANLIIEQLSIHLSTIMKKVDLRGLIEEQINTFDLDYIEKLIIEIANKELKLIMSLGFILGGIIGFFQGLVAIFV
>CP031130.1|AXG03979.1|1879631_1879976_-|YlbF/YmcA-family-competence-regulator
MAVNLYDYANQLEQALRESEEYKAIKEAFANVKANEESKKLFDEFRETQINFQQKQMQGEEIAEEDLQKAQEQAQAIEKDENISALMNAEQKMSQVFQEINQIIVKPLDEIYAD
>CP031130.1|AXG03978.1|1879152_1879359_+|hypothetical-protein
MITLLDLLGSNDQLETKCQNYHCTKYAKHFQAVLNESLKVKRFSISPIHDRTNSIMLKTLHFKMQKGS
>CP031130.1|AXG03977.1|1879040_1879139_-|hypothetical-protein
MSVGSLAVLTITEIAFPTEIFEKNQRTLQIKF
>CP031130.1|AXG03988.1|1888171_1888324_-|hypothetical-protein
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ
>CP031130.1|AXG03989.1|1888348_1888948_-|glucosamine-6-phosphate-isomerase
MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNVEKHAVDFSQINILDYDDKKSYFEGLGVPAGQVYPIAYEKDAIELIADKIKTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFLVVTGANKRDVVEKLYQENGKTSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA
>CP031130.1|AXG03990.1|1889105_1889576_-|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL
MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDSIEAFFEATNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDTALRIPMSEHIRSLNLSNTAALLIYEALRQQDFPGLN
>CP031130.1|AXG03991.1|1889580_1890708_-|tRNA-epoxyqueuosine(34)-reductase-QueG
MDTKQLKQDIIDYAYTIGIDSIGFTTADRFDELKQKLEAYHANGYASGFEESDIALRTEPKLSLPTARSIIAIAVGYPNKLKGAPKSVRGDRRGLFARASWGQDYHTIMRKRLDMLASFIESKVPDVEIKSMVDTGVLSDRAVAERAGLGFVGRNGFVINPKLGTWTYLGEMLVSIPFEPDDPLLDSCGDCTICVDRCPTSALVGNGQLNSQKCISFLTQTKGYMPDQYRYKIGNRLYGCDTCQQVCPKNRGINTEQDDIILEPEILKPRLVPLLRMSNKEFKQTYGHLAGAWRGKKPIQRNAILALAHFNEVDAIPELKKVAITDERPMIRATAYWAIGQILGEEARDFINANYDQEDAEVQNEMIKGLDTRRE
>CP031130.1|AXG03992.1|1890857_1891586_-|amino-acid-ABC-transporter-ATP-binding-protein
MPVIKINNLNKVFGDNEVLKDINLEINQGEVVAIIGPSGSGKSTLLRCMNLLEVPTKGQVIFEGNDLTEKGTQVDKLRQKMGMVFQNFNLFPHKKVVDNIILAPKLLKKDNNDELHKEALSLLDKVGLKEKADVYPNQLSGGQKQRVAIARALAMHPDVILFDEPTSALDPEVVGDVLKVMKDLAKEGMTMVVVTHEMGFAKDVSDKVIFMADGVVVESGTPVEIFEQPQHERTQNFLARVL
>CP031130.1|AXG03993.1|1891572_1893030_-|ABC-transporter-permease-subunit
MKCLIRFILVLGLLISSAMVYINPTAHAEQDQTWEKIKERGELRVGLSADYAPMEFEHTVNGKTEYAGVDIDLAKKIAKDNNLKLKIVNMSFDSLLGALKTGKIDIIISGMTSTPERKKQVDFSDSYMMTKNIMLVKKDKVNEYKDIKDFNNKKVGAQKGTEQEKIAQTEIENASITSLSRLPDVILALKSGKVEGAVVEKPVAEAYLKQNPKLGISNVKFNEEEKDTVIAVPKDSPKLLSQINKTIKEVKDKGLIDKYMTNAANAMNDDSGFISKYGSFFLKGIKITILISLIGVALGSILGAFVALMKLSKIKIISWIASIYIEILRGTPMLVQVFIVFFGITAALGLDISALVCGTIALVINSSAYIAEIIRAGINAVDKGQMEAARSLGLNYRQTMKSVIMPQAIKNILPALGNEFVTLIKESSIVSTIGVGEIMFNAQVVQGISFDPFTPLIVAAALYFVLTFVLTRIMNMIEGRLNASD
>CP031130.1|AXG03994.1|1893287_1894349_-|PTS-transporter-subunit-IIC
MSNANNADNKQFFSKILNSIGAGVVIALVPNALLGEVLKIFKSGNEILELTYQLVILIQSFMAFIIGVLAAHQFKFNGAGAAIVGTSAMIGSGAVVYSNNSFMLKGIGDIINTSLVVIIACLIYMVLQNKLGSFELIILPVLVPIVSGGIGLITLPYIRKITQAIGNVIHSFTDLNPLLMSILISVAFSLLMVTPISLVAIATAISLNGLGSGAANLGIVAACVTFLFGSLRVNSIGVNAVLLIGAAKMMIPVYLKNLIISIPLTINGIITGIIAYVLQVKGTPLSAGFGYTGLVGPINAFNRMSGDPTMNIILLALGYFVIPFVSAFIVHELCKKFIPIYSNDIYKFEVPKQ
>CP031130.1|AXG03995.1|1903294_1903741_-|transcriptional-repressor
MSVEIESIEHELEESIASLRQAGVRITPQRQAILRYLISSHTHPTADEIYQALSPDFPNISVATIYNNLRVFKDIGIVKELTYGDSSSRFDFNTHNHYHIICEQCGKIVDFQYPQLNEIERLAQHMTDFDVTHHRMEIYGVCKECQDK
>CP031130.1|AXG03996.1|1903837_1904788_-|hydroxyacid-dehydrogenase
MKVVGLNRMREVETELQQRFSDLDFKFYKKASEIPESDLADLDILVGYDGGINEAFLQRCPNLKWIAWFATGVNTLPLDYIADHGILLTNGKGVQAKQLSEYILAFILDDYKKMKLSYDNQRQHIYDSKITGKRLSGQTVLFLGTGAIATRTAKLAKAFNMNLIGLSKSGQNKDEFDEIYTIESLESTLPNADIIINALPETQETIHLLKKKHFELMKDEALFINIGRGSIVKEAVLIEVLKSKVIRHAYLDVFENEPLKPNHELYELENVTITAHITGNDYEAKYDLLDIFKNNLVNFLNKNGLIENEVDAKKGY
>CP031130.1|AXG03997.1|1904793_1905249_-|thioredoxin-dependent-thiol-peroxidase
MLQKGEQFPIFKLENQDGTVITNDTLKGKKAIIYFYPRDNTPTCTTEACDFRDNLEMFNDLDVAVYGISGDSKKKHQNFIEKHGLNFDLLVDEDFKLAKETGVYQLKKSFGKESMGIVRTTFIIDEQGKVLDVIEKVKVKTQIEELKNILG

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Crispr_ID: CP031130_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031130_6

1929326-1929406

Orphan

Consensus_repeat	Method
TCTATGTTGGGGCCCCGCCAACCTG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP031130_6

>merge|CP031130|6|1929326-1929406|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTG

>CP031130|6|6|1929326-1929406|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACCTG	CACATTATCGTAAGCTGACTTTTCGTCAGCT
TCTGTGTTGGGGCCCCGCCAACCTG

Protein	Signature genes	Signature genes Name	Protein_function
CP031130.1\|AXG04013.1\|1921451_1922708_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|376723
CP031130.1\|AXG04018.1\|1925410_1926040_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP031130.1\|AXG04027.1\|1934067_1934568_+\|non-heme-ferritin	unknown	unknown	gnl\|CDD\|224445
CP031130.1\|AXG04022.1\|1928388_1929147_-\|methionine-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
CP031130.1\|AXG04021.1\|1927785_1928172_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG04026.1\|1932462_1933776_-\|Mur-ligase-family-protein	unknown	unknown	gnl\|CDD\|223840
CP031130.1\|AXG04023.1\|1929674_1930661_+\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
CP031130.1\|AXG04017.1\|1924081_1925299_+\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|224214
CP031130.1\|AXG04028.1\|1934649_1934742_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG04910.1\|1931091_1931505_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG04019.1\|1926029_1927073_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
CP031130.1\|AXG04025.1\|1931729_1932461_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
CP031130.1\|AXG04015.1\|1923057_1923522_+\|protein-tyrosine-phosphatase	unknown	unknown	gnl\|CDD\|319971
CP031130.1\|AXG04016.1\|1923528_1923804_+\|YtxH-domain-containing-protein	unknown	unknown	unknown
CP031130.1\|AXG04031.1\|1936895_1937426_-\|DUF3267-domain-containing-protein	unknown	unknown	gnl\|CDD\|378690
CP031130.1\|AXG04020.1\|1927069_1927771_-\|transporter	unknown	unknown	gnl\|CDD\|227100
CP031130.1\|AXG04030.1\|1935578_1936649_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
CP031130.1\|AXG04029.1\|1934957_1935512_+\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
CP031130.1\|AXG04024.1\|1931533_1931644_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG04014.1\|1922710_1922911_-\|DUF1128-family-protein	unknown	unknown	gnl\|CDD\|227177

Protein	Function_ID	Function_description	E-value
CP031130.1\|AXG04013.1\|1921451_1922708_-\|aminopeptidase	gnl\|CDD\|376723	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29).	0
CP031130.1\|AXG04018.1\|1925410_1926040_-\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.91794e-79
CP031130.1\|AXG04027.1\|1934067_1934568_+\|non-heme-ferritin	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	4.6035e-74
CP031130.1\|AXG04022.1\|1928388_1929147_-\|methionine-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.9498e-126
CP031130.1\|AXG04026.1\|1932462_1933776_-\|Mur-ligase-family-protein	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	3.37755e-99
CP031130.1\|AXG04023.1\|1929674_1930661_+\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	5.31001e-76
CP031130.1\|AXG04017.1\|1924081_1925299_+\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	3.59491e-85
CP031130.1\|AXG04019.1\|1926029_1927073_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.78722e-72
CP031130.1\|AXG04025.1\|1931729_1932461_-\|glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	2.14444e-120
CP031130.1\|AXG04015.1\|1923057_1923522_+\|protein-tyrosine-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	3.39151e-65
CP031130.1\|AXG04031.1\|1936895_1937426_-\|DUF3267-domain-containing-protein	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	1.4991e-11
CP031130.1\|AXG04020.1\|1927069_1927771_-\|transporter	gnl\|CDD\|227100	COG4758, COG4758, Predicted membrane protein [Function unknown].	9.42019e-79
CP031130.1\|AXG04030.1\|1935578_1936649_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
CP031130.1\|AXG04029.1\|1934957_1935512_+\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	4.39188e-75
CP031130.1\|AXG04014.1\|1922710_1922911_-\|DUF1128-family-protein	gnl\|CDD\|227177	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown].	9.24488e-25

>CP031130.1|AXG04022.1|1928388_1929147_-|methionine-aminopeptidase
MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTKIEEE
>CP031130.1|AXG04021.1|1927785_1928172_-|hypothetical-protein
MNYVERYIEQFLRATVRNNIKHYLLMLDEKMKNLDDYMRYLITKKEQLSKLIDSLMLTLENKYIDIAEAFQIQCAREINNQEIENIKSELNKVEAYYAQIETQIQQTSTEKIATEKTSYLINYMNAVA
>CP031130.1|AXG04020.1|1927069_1927771_-|transporter
MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAFWIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWFGEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNINLHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR
>CP031130.1|AXG04019.1|1926029_1927073_-|two-component-sensor-histidine-kinase
MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKTQIERSMEGETVGINDQNIEIYSETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVSQQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEDSYDD
>CP031130.1|AXG04018.1|1925410_1926040_-|DNA-binding-response-regulator
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMDDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ
>CP031130.1|AXG04017.1|1924081_1925299_+|YihY/virulence-factor-BrkB-family-protein
MSKKDHSSSKYLNSVKEAQEESKKKNKSNPKIDVDRTYIEPQQFQSKKPKKDDQVFFLSRLNKPAKYKKDSNFLSYLIYRIGKDDASGLAAQMTYHFVLAMFPMLLFLLTLLPFFNIKQSQITNMLSNAPAETSTLIKSVIGDITQNSSGGLLSIGLILAIWSASNGMTAIMNSFNVAYDVEDSRNGIVLKLLSVVFTVVMGVVFVVALALPTLGSVISHFLFGPLGFDEQVKWIFNLIRIVLPIIIIFIVFIVLYSVAPNVKTKLKSVLPGAVFTSIIWLAGSFGFGWYISNFGNYSKTYGSIAGIIILLLWLYITSFIIIVGAEINAIIHQRSVIKGKTPEEAALEHDDNNKNHYNENTRYEYDEDSNATHQRTYHVDEHPSDTYPEDDKNIKDKIVDKLKKD
>CP031130.1|AXG04016.1|1923528_1923804_+|YtxH-domain-containing-protein
MENKFVPGILIGAVIGGAISLADKSTRQALVQSVKDAKNGNRTRKPSKVSKIKDEVLYWKDVVEEIRRNNPELERSLKDAKETFVNRKNQR
>CP031130.1|AXG04015.1|1923057_1923522_+|protein-tyrosine-phosphatase
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG
>CP031130.1|AXG04014.1|1922710_1922911_-|DUF1128-family-protein
MTNEEKVLAIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQSRERLSPSEVTAIADALGQLRHD
>CP031130.1|AXG04013.1|1921451_1922708_-|aminopeptidase
MGILTNYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYSDPTLKRLKFENESVEHFANHELKSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPELSVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNGKEQAFIANIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAEKGEAVLKDLINTDEGSRRLGEVALVPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTVEEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSKELVFENGNWASTF
>CP031130.1|AXG04023.1|1929674_1930661_+|aromatic-acid-exporter-family-protein
MNDQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGIHDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQELILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRLFITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKALEISGENQIKSHLLYEVLMIYRLLDSRYA
>CP031130.1|AXG04910.1|1931091_1931505_-|hypothetical-protein
MKPTKVILRDASYLHSKTSITFILKDVVIEEDNKIYYFDTSATFEDQEVKFEFALFDSDMDNLKHMDYDNPVTEIYFIEPDLHFTIIDFNQELLCIYIDFDSGLRHSNMATESGISLRINVAKSDFTKFINELASLY
>CP031130.1|AXG04024.1|1931533_1931644_-|hypothetical-protein
MDGNNQIDVCFFVLVNNYYTMSIYPRIINSNGDYAT
>CP031130.1|AXG04025.1|1931729_1932461_-|glutamine-amidotransferase
MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVVEINETEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIEDGMPGLTICGGYQFLGKKYITPDGTELEGLGILDFYTESKTNRLTGDIIIESDTFGTIVGFENHGGRTFHDFGTLGHVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPKEIDNEAEIQAKQVLIDRANRQKKSR
>CP031130.1|AXG04026.1|1932462_1933776_-|Mur-ligase-family-protein
MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKTKIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKLLLNADDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQIGHYHCQCGFKREQAKYEISSFDVAPFLHLNINDEKYDMKIAGDFNAYNALAAYSVLRELGLNEQTIKNGFETYTSDNGRMQYFKKERKEAMINLAKNPAGMNASLSVGEQLEGEKVYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPIIVERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS
>CP031130.1|AXG04027.1|1934067_1934568_+|non-heme-ferritin
MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEESMFETHINYLTRIGDDSNALYLYEKELGARTFDEE
>CP031130.1|AXG04028.1|1934649_1934742_-|hypothetical-protein
MTKNTIISLENEKTQINDSENESSDLRKAK
>CP031130.1|AXG04029.1|1934957_1935512_+|DNA-polymerase-III-subunit-epsilon
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNLKDKG
>CP031130.1|AXG04030.1|1935578_1936649_-|DNA-polymerase-IV
MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVYSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEKTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGEFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
>CP031130.1|AXG04031.1|1936895_1937426_-|DUF3267-domain-containing-protein
MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIILLILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLILLSTGLLILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP031130_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031130_7

2173036-2173116

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP031130_7

>merge|CP031130|7|2173036-2173116|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTCAACTTTAGTTGTTAGGGGCTTCT

>CP031130|7|7|2173036-2173116|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCATGCGCTTAGCGCAGGCGCTCCTACTTTT
CAACTTTAGTTGTTAGGGGCTTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP031130.1\|AXG04275.1\|2170359_2170680_+\|ArsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP031130.1\|AXG04274.1\|2169542_2170208_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
CP031130.1\|AXG04269.1\|2164349_2164793_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
CP031130.1\|AXG04281.1\|2174829_2174922_+\|erm-Leader-peptide	unknown	unknown	unknown
CP031130.1\|AXG04286.1\|2181049_2183182_+\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226234
CP031130.1\|AXG04279.1\|2173988_2174171_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG04278.1\|2173451_2173556_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG04273.1\|2168168_2169107_-\|class-I-mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
CP031130.1\|AXG04285.1\|2179476_2181015_+\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
CP031130.1\|AXG04276.1\|2170681_2171662_+\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
CP031130.1\|AXG04277.1\|2171927_2173019_+\|transcriptional-regulator	unknown	unknown	unknown
CP031130.1\|AXG04271.1\|2165862_2167236_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
CP031130.1\|AXG04280.1\|2174235_2174394_+\|integrase	unknown	unknown	unknown
CP031130.1\|AXG04270.1\|2164992_2165406_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
CP031130.1\|AXG04282.1\|2175051_2175909_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
CP031130.1\|AXG04268.1\|2163518_2164229_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP031130.1\|AXG04284.1\|2176990_2178796_-\|glutamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
CP031130.1\|AXG04283.1\|2175976_2176759_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
CP031130.1\|AXG04272.1\|2167907_2168138_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG04287.1\|2183193_2183628_+\|mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014

Protein	Function_ID	Function_description	E-value
CP031130.1\|AXG04282.1\|2175051_2175909_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	1.99434e-58
CP031130.1\|AXG04274.1\|2169542_2170208_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
CP031130.1\|AXG04269.1\|2164349_2164793_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
CP031130.1\|AXG04286.1\|2181049_2183182_+\|PRD-domain-containing-protein	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.68454e-68
CP031130.1\|AXG04270.1\|2164992_2165406_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	1.45785e-45
CP031130.1\|AXG04273.1\|2168168_2169107_-\|class-I-mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	3.25063e-129
CP031130.1\|AXG04285.1\|2179476_2181015_+\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP031130.1\|AXG04276.1\|2170681_2171662_+\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.20197e-108
CP031130.1\|AXG04275.1\|2170359_2170680_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	2.83702e-17
CP031130.1\|AXG04271.1\|2165862_2167236_-\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
CP031130.1\|AXG04287.1\|2183193_2183628_+\|mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
CP031130.1\|AXG04268.1\|2163518_2164229_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP031130.1\|AXG04283.1\|2175976_2176759_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	3.34326e-106
CP031130.1\|AXG04284.1\|2176990_2178796_-\|glutamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0

>CP031130.1|AXG04277.1|2171927_2173019_+|transcriptional-regulator
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYVQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKETTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP031130.1|AXG04276.1|2170681_2171662_+|cation-transporter
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHAH
>CP031130.1|AXG04275.1|2170359_2170680_+|ArsR-family-transcriptional-regulator
MSEQYSEIHTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP031130.1|AXG04274.1|2169542_2170208_-|SDR-family-NAD(P)-dependent-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>CP031130.1|AXG04273.1|2168168_2169107_-|class-I-mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQRGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP031130.1|AXG04272.1|2167907_2168138_-|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP031130.1|AXG04271.1|2165862_2167236_-|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP031130.1|AXG04270.1|2164992_2165406_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWFVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP031130.1|AXG04269.1|2164349_2164793_-|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP031130.1|AXG04268.1|2163518_2164229_+|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>CP031130.1|AXG04278.1|2173451_2173556_-|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>CP031130.1|AXG04279.1|2173988_2174171_-|hypothetical-protein
MIIFRFKVNAFFPVKLCLMIRFCLESCCIFRRHLLITFHNIRSKFIMFKYISSKCIICTG
>CP031130.1|AXG04280.1|2174235_2174394_+|integrase
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>CP031130.1|AXG04281.1|2174829_2174922_+|erm-Leader-peptide
MTYGSIVAILCALFVIFFIPYMEKKDKKKK
>CP031130.1|AXG04282.1|2175051_2175909_-|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITTFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQDETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>CP031130.1|AXG04283.1|2175976_2176759_-|ABC-transporter-ATP-binding-protein
MLIQLDQVGRMKQGKTILKNISWQINGGDKWILYGLNGAGKTTLLNILNAYEPATTGDVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSESYPTLAMIYVTHFIEEITSNFTKILLLKDGKSVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>CP031130.1|AXG04284.1|2176990_2178796_-|glutamine--fructose-6-phosphate-aminotransferase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP031130.1|AXG04285.1|2179476_2181015_+|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP031130.1|AXG04286.1|2181049_2183182_+|PRD-domain-containing-protein
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGTDSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIEIYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDIDGNTSFENEQTSYLTSVFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDAINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMVLITVLEEPLILPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP031130.1|AXG04287.1|2183193_2183628_+|mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP031130_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031130_8

2439038-2439135

Orphan

Consensus_repeat	Method
TTTCTGCGAATTTTATGAGCTAGAAAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031130_8

>merge|CP031130|8|2439038-2439135|CRISPRCasFinder
TTTCTGCGAATTTTATGAGCTAGAAAGGCTTATGCATTAGTAGCGAAGCTATCTAATGCGTTCCTTTATTTTCTGCGAATTTTATGAGCTAGAAAGGC

>CP031130|8|8|2439038-2439135|CRISPRCasFinder
TTTCTGCGAATTTTATGAGCTAGAAAGGC	TTATGCATTAGTAGCGAAGCTATCTAATGCGTTCCTTTAT
TTTCTGCGAATTTTATGAGCTAGAAAGGC

Protein	Signature genes	Signature genes Name	Protein_function
CP031130.1\|AXG04540.1\|2438031_2438898_-\|cation-transporter	unknown	unknown	gnl\|CDD\|223131
CP031130.1\|AXG04535.1\|2432819_2433551_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
CP031130.1\|AXG04550.1\|2446150_2447266_-\|pyridoxal-phosphate-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223234
CP031130.1\|AXG04923.1\|2435147_2436551_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
CP031130.1\|AXG04549.1\|2445447_2446140_-\|6-carboxyhexanoate--CoA-ligase	unknown	unknown	gnl\|CDD\|224342
CP031130.1\|AXG04542.1\|2439650_2440961_+\|immunoglobulin-binding-protein-sbi	unknown	unknown	gnl\|CDD\|288473
CP031130.1\|AXG04534.1\|2431472_2432723_+\|FemA/FemB-family-glycyltransferase-FmhA	unknown	unknown	gnl\|CDD\|367067
CP031130.1\|AXG04533.1\|2430855_2431218_-\|DUF4467-domain-containing-protein	unknown	unknown	gnl\|CDD\|291399
CP031130.1\|AXG04924.1\|2436516_2436636_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG04543.1\|2440864_2441050_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG04544.1\|2441178_2441361_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG04547.1\|2443940_2444918_+\|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B	unknown	unknown	gnl\|CDD\|273388
CP031130.1\|AXG04546.1\|2442991_2443939_+\|bi-component-gamma-hemolysin-HlgCB-subunit-C	unknown	unknown	gnl\|CDD\|369625
CP031130.1\|AXG04545.1\|2441495_2442425_+\|bi-component-gamma-hemolysin-HlgAB-subunit-A	unknown	unknown	gnl\|CDD\|369625
CP031130.1\|AXG04539.1\|2437018_2437705_-\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184518
CP031130.1\|AXG04541.1\|2439451_2439556_-\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG04548.1\|2444969_2445437_-\|QueT-transporter-family-protein	unknown	unknown	gnl\|CDD\|377623
CP031130.1\|AXG04537.1\|2434247_2435027_-\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270429
CP031130.1\|AXG04538.1\|2436760_2436865_+\|hypothetical-protein	unknown	unknown	unknown
CP031130.1\|AXG04536.1\|2433547_2434267_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836

Protein	Function_ID	Function_description	E-value
CP031130.1\|AXG04540.1\|2438031_2438898_-\|cation-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	2.54055e-90
CP031130.1\|AXG04535.1\|2432819_2433551_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	3.20826e-144
CP031130.1\|AXG04550.1\|2446150_2447266_-\|pyridoxal-phosphate-dependent-aminotransferase-family-protein	gnl\|CDD\|223234	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism].	1.99808e-138
CP031130.1\|AXG04923.1\|2435147_2436551_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.06541e-91
CP031130.1\|AXG04534.1\|2431472_2432723_+\|FemA/FemB-family-glycyltransferase-FmhA	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	0
CP031130.1\|AXG04533.1\|2430855_2431218_-\|DUF4467-domain-containing-protein	gnl\|CDD\|291399	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467). Large family of predicted lipoproteins from Gram-positive bacteria Experimentally determined structure shows a cystatitin-like fold, allowing us to classify this family in the NFT2 clan, despite lack of any detectable sequence similarity between members of this family and other families in this clan.	3.11961e-31
CP031130.1\|AXG04537.1\|2434247_2435027_-\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270429	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold. This subgroup includes cystine-binding domain of periplasmic receptor-dependent ATP-binding cassette transporters from Neisseria gonorrhoeae and Bacillus subtilis and their related proteins. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.11829e-100
CP031130.1\|AXG04548.1\|2444969_2445437_-\|QueT-transporter-family-protein	gnl\|CDD\|377623	pfam06177, QueT, QueT transporter. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes, suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.	0.00158559
CP031130.1\|AXG04547.1\|2443940_2444918_+\|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	5.50766e-128
CP031130.1\|AXG04546.1\|2442991_2443939_+\|bi-component-gamma-hemolysin-HlgCB-subunit-C	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	7.97441e-93
CP031130.1\|AXG04549.1\|2445447_2446140_-\|6-carboxyhexanoate--CoA-ligase	gnl\|CDD\|224342	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism].	2.9803e-130
CP031130.1\|AXG04539.1\|2437018_2437705_-\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184518	PRK14119, gpmA, phosphoglyceromutase; Provisional.	3.52864e-167
CP031130.1\|AXG04536.1\|2433547_2434267_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	4.98247e-78
CP031130.1\|AXG04542.1\|2439650_2440961_+\|immunoglobulin-binding-protein-sbi	gnl\|CDD\|288473	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI. This family of proteins represents Sbi domain IV which binds the central complement protein C3. Sbi-IV interacts with Sbi-III to induce a consumption of complement via alternative pathway activation. When not interacting with Sbi-III, Sbi-IV inhibits the alternative pathway without complement consumption. The structure of Sbi-IV consists of a three-helix bundle fold.	1.70632e-25
CP031130.1\|AXG04545.1\|2441495_2442425_+\|bi-component-gamma-hemolysin-HlgAB-subunit-A	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	4.31899e-97

>CP031130.1|AXG04540.1|2438031_2438898_-|cation-transporter
MSHNENLKLAQRGAYLSLIVYIILSIVKYVTGFVFNSAAVRADALNNMTDIIVSLAVIIGLKISIKPADRNHPYGHLKSENISSLLVSFVIMFVGIQVVIQNAPRLFKEDDVVPNAITIIVSLISGLVMLIVFAVNQRLAKRTKSSSLNSAAKDNLSDSLVSIGTAIGLIFTQIGFPIVDIILATLLGLLIVYTGFGIFKEAIFMLSDGFNETELEAYRNDILEVDEVQEVKSIKGRYHGSSVFIDVTIVVDANLSLVEAHQICDNVEHHLHKKGISSVYVHPEPDHL
>CP031130.1|AXG04539.1|2437018_2437705_-|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase
MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVIDKYYL
>CP031130.1|AXG04538.1|2436760_2436865_+|hypothetical-protein
MKLDLQTARRNLNSPNIKTRKRALKIIKQHKRAK
>CP031130.1|AXG04924.1|2436516_2436636_-|hypothetical-protein
MSKNECCFLDGEGEALNVEETKINDDYYYADGWIFWIIK
>CP031130.1|AXG04923.1|2435147_2436551_-|MFS-transporter
MLMGGFFGLLNETLLVTALPSIMKDFEISYTQVQWLTTAFLLTNGIVIPLSALVIQRYTTRQVFLVGISIFFLGTLLGGLSPHFATLLVARIIQALGAGIMMPLMMTTILDVFQPHERGKYMGIFGLVIGLAPAIGPTLSGYLVEYFNWRSLFHVVAPIAAVTFLIGFKTIKNVGTTIKVPIDFISVIFSVLGFGGLLYGTSSISEKGFDNPIVLVSMIGGVVLVALFVLRQYRLSTPLLNFAVFKNKQFTVGIIIMGVTMVSMIGSETILPIFVQNLLHRSALDSGLTLLPGAIVMAFMSMTSGALYEKFGPRKLALVGMAIVVITTAYFVVMDEQTSTIMLATVYAIRMVGIALGLIPVMTHTMNQLKPEMNAHGSSMTNTVQQIAGSIGTAALITILSHASKNFSPTMSDYNGMNKIDMMNQIKVDTMLHGYHAGFLFALLITVVSFFCSFMLQGKKKEVDSRQ
>CP031130.1|AXG04537.1|2434247_2435027_-|amino-acid-ABC-transporter-substrate-binding-protein
MKRLLFVMIAFVFILAACGNNSSKDKEANKDSKTINVGTEGTYAPFSFHDKDGKLTGYDIDVIKAVAKEEGLKLKFNETSWDSMFAGLDAGRFDVIANQVGINPDREKKYKFSKPYTFSSAVLVIRENEKDIKDFDDVKGKKLAQTFTSNYGKLAKDKGADITKVDGFNQSMDLLLSKRVDGTFNDSLSYLDYKKQKPNAKIKAIKGNAEQSRSAFAFSKKADDETVQKFNDGLKKIEENGELAKIGKKWFGQDVSKSK
>CP031130.1|AXG04536.1|2433547_2434267_-|amino-acid-ABC-transporter-permease
MFLNLNSEQQHALDAAKQAFGPMLEGLVKYSIPITLVTFVLGLIIALFTALMRISTSKILRSISRVYVSIIRGTPMIVQLFIIFYGIPELGRLLTNDADNQWTLAPVVAAIIGLSLNVGAYASEIIRGGIISIPKGQTEAAYSIGMTYGQTIQRIILPQAIRVSIPALGNTFLSLIKDTSLLGFILVAEMFRKAQEVASTTYEYLTIYVLVALMYWVVCFIISIIQGIYESYIERGYRS
>CP031130.1|AXG04535.1|2432819_2433551_-|amino-acid-ABC-transporter-ATP-binding-protein
MIQLNNIHKSFNDVEVIKGIDLSVEQGEVVTLIGRSGSGKTTLLRMINALEIPTEGTVYVNGKTYTSKDKKSQIEVRKQSGMVFQSYNLFPHKTALENVMEGLITVKKLKKDEARGKSLELLEKVGLTHVKDQRPHALSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVNDVLKVIKDLANEGMTMVIVTHEMRFAKEVSNNIVFIHEGMIGEQGAPEEMFNRPKTEELRRFLNVINEE
>CP031130.1|AXG04534.1|2431472_2432723_+|FemA/FemB-family-glycyltransferase-FmhA
MNFVTLTSDEFNAFTTKHFSHYTQSAIHYNHRVDLKGDVHLVGVKDDNGQVIAGCLLTEARTLKFFKYFYTHRGPVMDYTNQSLVAFFFKALTSYLKKHNCLYVLVDPYLIENLRNADGEIVKSYDNRAFVRTMDTLGYKHQGFPVGYDSMSQIRWLSVLDLKDKTEDQLLKEMDYQTRRNIKKTYDIGVKTKTLTIDETQTFFDLFHMAEEKHGFKFRELPYFEEMQKLYDDHAMLKLAYIDLNEYLKTLQLKQQQLTAELSGVEEALKESPNSKKNKTKRTQLEQQLNSNKRKIDNTIEQIEQDGAVLNLASALFIYNEHEVYYLSSGSNPKYNAYMGAYHLQWEMIKFAKAHHIDRYNFYGITGDFSESSEDYGVQQFKKGFNAHVEEYIGDFIKPIKPMFYKIQQYLNHKRR
>CP031130.1|AXG04533.1|2430855_2431218_-|DUF4467-domain-containing-protein
MKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKDANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEENMTN
>CP031130.1|AXG04541.1|2439451_2439556_-|hypothetical-protein
MLTNRLTSVNYVKKRLIQNIQRILSKEVLYGEMQ
>CP031130.1|AXG04542.1|2439650_2440961_+|immunoglobulin-binding-protein-sbi
MKNKYISKLLVGAATITLATMISNGEAKASENTQQTSTKHQTTQNNYVTDQQKAFYQVLHLKGITEEQRNQYIKTLREHPERAQEVFSESLKDSKNPDRRVAQQNAFYNVLKNDNLTEQEKNNYIAQIKENPDKSQQVWVESVQSSKAKERQNIENADKAIKDFQDNKAPHDKSAAYEANSKLPKDLRDKNNRFVEKVSIEKAIVRHDERVKSANDAITKLQKNDSIENRRLAQREVNKAPMDVKEHLQKQLDALVAQKDAEKKVAPKVEAPQIQSPQIEKPKAESPKVEVPQIQSPKVEVPQSKLLGYYQSLKDSFNYGYKYLTDTYKSYKEKYDTAKYYTDKYFKYKGTIDKTVLSVFGNGYKSYIQPLKVEDQKNYVSKSYAQVRNYVTETLNTGKVLYAFYQNPKVVKAAITTAETASSIKNTLSNLLSFWK
>CP031130.1|AXG04543.1|2440864_2441050_-|hypothetical-protein
MENQRFFLITVYYENYLKNDVKLEKILLIDYFQNDNKLLNVFLIDDAVSAVVIAALTTFGF
>CP031130.1|AXG04544.1|2441178_2441361_-|hypothetical-protein
MMFLHYVMFKRFIGRRRLYSYITMFCKSYSIELLFNYGACSGRGMDCAIVCENLKLIKLS
>CP031130.1|AXG04545.1|2441495_2442425_+|bi-component-gamma-hemolysin-HlgAB-subunit-A
MIKNKILTATLAVGLIAPLANPFIEISKAENKIEDIGQGAEIIKRTQDITSKRLAITQNIQFDFVKDKKYNKDALVVKMQGFISSRTTYSDLKKYPYIKRMIWPFQYNISLKTKDSNVDLINYLPKNKIDSADVSQKLGYNIGGNFQSAPSIGGSGSFNYSKTISYNQKNYVTEVESQNSKGVKWGVKANSFVTPNGQVSAYDQYLFAQDPTGPAARDYFVPDNQLPPLIQSGFNPSFITTLSHERGKGDKSEFEITYGRNMDATYAYVTRHRLAVDRKHDAFKNRNVTVKYEVNWKTHEVKIKSITPK
>CP031130.1|AXG04546.1|2442991_2443939_+|bi-component-gamma-hemolysin-HlgCB-subunit-C
MLKNKILATTLSVSLLAPLANPLLENAKAANDTEDIGKGSDIEIIKRTEDKTSNKWGVTQNIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQNSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPSFIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRVHNAFVNRNYTVKYEVNWKTHEIKVKGQN
>CP031130.1|AXG04547.1|2443940_2444918_+|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B
MKMNKLVKSSVATSMALLLLSGTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTFKSTYEIDWENHKVKLLDTKETENNK
>CP031130.1|AXG04548.1|2444969_2445437_-|QueT-transporter-family-protein
MTSKDITQISVIAAILTILAVLKIPSIIPGLDFQLSAPAALLILAFFGIKKYFLGGLLSSLLLLIFGVFNPINVIISIIFRVIAIAVVYLLKINVLSLVLASVLGSLVSRLLLSIILNLPVWVVLLNAIPGVIFTLIVAIPLYLTMRKRMAVLLR
>CP031130.1|AXG04549.1|2445447_2446140_-|6-carboxyhexanoate--CoA-ligase
MYSIKMRSSNQDVHISGAETICEFDKIEQTVQRFYNKGFFHENGQPDFLNIKIQKIMEPIQQIKALQIIEDDKANLQHLTQECGVTEQALNQGMTYIKNETVYTGAIILSAISGKRLDSFGQRGIRATHFSFEDINNKGDLNERVTDALAIASCINAHPYVKGELCVSDDLTYTTGYFASAKIGYHRLFDIKPVNTRYGGRIIFVDNRIDLNHYISFLESTPKQVVYETV
>CP031130.1|AXG04550.1|2446150_2447266_-|pyridoxal-phosphate-dependent-aminotransferase-family-protein
MMFQEQIDLLQQKGLYRSLKSVGYIDRQYIEVENKRCTNYTSNDYLGLGQIAFDKDDFERFMRKYSYHLSSSRLISGSSTAYEEIETMLAGWLGYSACTILNSGYDANLALFNIFKNTNCVVFSDQENHASIIDGIKLSGLEKVIYKHLDIADLEKRLAEYPNQNIQKIIISDSVFSTNGDVVDIGQLVSLKHKYNATLILDVSHSFGIENYSNYQGIDILTSSLSKACGAYGGVILSSNDVKDMLINHGRPLIYSSSLPIYNLYFIKRNIEKLINADDRRTKLNSLSKYFNQKLKALNVNYNSSNSPIKFIEFDDIEAAENIHQTLLKHHVFTSYLRYPTVTKPMLRISLSYFHTEQDIDRLFEILHQED

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	111934-111958	1	0.96
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	315550-315574	1	0.96
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	315605-315629	1	0.96
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	590620-590644	1	0.96
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	761045-761069	1	0.96
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	761103-761127	1	0.96
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	761161-761185	1	0.96
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	761219-761243	1	0.96
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	1015925-1015949	1	0.96
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	1326069-1326093	1	0.96
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	1414658-1414682	1	0.96
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	1604886-1604910	1	0.96
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	1780734-1780758	1	0.96
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	1930764-1930788	1	0.96
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	2278084-2278108	1	0.96
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	2614921-2614945	1	0.96
CP031130_3	3.1\|755533\|32\|CP031130\|CRISPRCasFinder	755533-755564	32	CP031130.1	315562-315593	1	0.969
CP031130_3	3.1\|755533\|32\|CP031130\|CRISPRCasFinder	755533-755564	32	CP031130.1	315617-315648	1	0.969
CP031130_3	3.1\|755533\|32\|CP031130\|CRISPRCasFinder	755533-755564	32	CP031130.1	1780746-1780777	1	0.969
CP031130_6	6.1\|1929351\|31\|CP031130\|CRISPRCasFinder	1929351-1929381	31	CP031130.1	315445-315475	1	0.968
CP031130_6	6.1\|1929351\|31\|CP031130\|CRISPRCasFinder	1929351-1929381	31	CP031130.1	590687-590717	1	0.968
CP031130_6	6.1\|1929351\|31\|CP031130\|CRISPRCasFinder	1929351-1929381	31	CP031130.1	1015852-1015882	1	0.968
CP031130_6	6.1\|1929351\|31\|CP031130\|CRISPRCasFinder	1929351-1929381	31	CP031130.1	1116308-1116338	1	0.968
CP031130_6	6.1\|1929351\|31\|CP031130\|CRISPRCasFinder	1929351-1929381	31	CP031130.1	1326136-1326166	1	0.968
CP031130_6	6.1\|1929351\|31\|CP031130\|CRISPRCasFinder	1929351-1929381	31	CP031130.1	1604813-1604843	1	0.968
CP031130_6	6.1\|1929351\|31\|CP031130\|CRISPRCasFinder	1929351-1929381	31	CP031130.1	2278128-2278158	1	0.968
CP031130_6	6.1\|1929351\|31\|CP031130\|CRISPRCasFinder	1929351-1929381	31	CP031130.1	2564502-2564532	1	0.968
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	768360-768384	2	0.92
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	1330559-1330583	2	0.92
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	CP031130.1	2289004-2289028	2	0.92
CP031130_3	3.1\|755533\|32\|CP031130\|CRISPRCasFinder	755533-755564	32	CP031130.1	111946-111977	2	0.938
CP031130_3	3.1\|755533\|32\|CP031130\|CRISPRCasFinder	755533-755564	32	CP031130.1	590632-590663	2	0.938
CP031130_3	3.1\|755533\|32\|CP031130\|CRISPRCasFinder	755533-755564	32	CP031130.1	761084-761115	2	0.938
CP031130_3	3.1\|755533\|32\|CP031130\|CRISPRCasFinder	755533-755564	32	CP031130.1	761142-761173	2	0.938
CP031130_3	3.1\|755533\|32\|CP031130\|CRISPRCasFinder	755533-755564	32	CP031130.1	761200-761231	2	0.938
CP031130_3	3.1\|755533\|32\|CP031130\|CRISPRCasFinder	755533-755564	32	CP031130.1	1940094-1940125	2	0.938
CP031130_3	3.1\|755533\|32\|CP031130\|CRISPRCasFinder	755533-755564	32	CP031130.1	2288985-2289016	2	0.938
CP031130_3	3.1\|755533\|32\|CP031130\|CRISPRCasFinder	755533-755564	32	CP031130.1	2614933-2614964	2	0.938
CP031130_6	6.1\|1929351\|31\|CP031130\|CRISPRCasFinder	1929351-1929381	31	CP031130.1	760972-761002	2	0.935
CP031130_6	6.1\|1929351\|31\|CP031130\|CRISPRCasFinder	1929351-1929381	31	CP031130.1	2289045-2289075	2	0.935

1. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 111934-111958, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

2. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 315550-315574, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctatgttg	Protospacer
******************* *****

3. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 315605-315629, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctatgttg	Protospacer
******************* *****

4. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 590620-590644, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

5. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 761045-761069, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

6. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 761103-761127, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

7. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 761161-761185, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

8. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 761219-761243, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

9. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 1015925-1015949, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

10. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 1326069-1326093, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

11. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 1414658-1414682, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

12. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 1604886-1604910, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

13. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 1780734-1780758, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

14. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 1930764-1930788, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

15. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 2278084-2278108, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

16. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 2614921-2614945, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

17. spacer 3.1|755533|32|CP031130|CRISPRCasFinder matches to position: 315562-315593, mismatch: 1, identity: 0.969

acttgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
acttgcattgcttgtagaatttcttttcgaaa	Protospacer
**********.*********************

18. spacer 3.1|755533|32|CP031130|CRISPRCasFinder matches to position: 315617-315648, mismatch: 1, identity: 0.969

acttgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
acttgcattgcttgtagaatttcttttcgaaa	Protospacer
**********.*********************

19. spacer 3.1|755533|32|CP031130|CRISPRCasFinder matches to position: 1780746-1780777, mismatch: 1, identity: 0.969

acttgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
acttgcattgtctgtagaatttcttttcgaaa	Protospacer
***********.********************

20. spacer 6.1|1929351|31|CP031130|CRISPRCasFinder matches to position: 315445-315475, mismatch: 1, identity: 0.968

cacattatcgtaagctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
********.**********************

21. spacer 6.1|1929351|31|CP031130|CRISPRCasFinder matches to position: 590687-590717, mismatch: 1, identity: 0.968

cacattatcgtaagctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
********.**********************

22. spacer 6.1|1929351|31|CP031130|CRISPRCasFinder matches to position: 1015852-1015882, mismatch: 1, identity: 0.968

cacattatcgtaagctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
********.**********************

23. spacer 6.1|1929351|31|CP031130|CRISPRCasFinder matches to position: 1116308-1116338, mismatch: 1, identity: 0.968

cacattatcgtaagctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
********.**********************

24. spacer 6.1|1929351|31|CP031130|CRISPRCasFinder matches to position: 1326136-1326166, mismatch: 1, identity: 0.968

cacattatcgtaagctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
********.**********************

25. spacer 6.1|1929351|31|CP031130|CRISPRCasFinder matches to position: 1604813-1604843, mismatch: 1, identity: 0.968

cacattatcgtaagctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
********.**********************

26. spacer 6.1|1929351|31|CP031130|CRISPRCasFinder matches to position: 2278128-2278158, mismatch: 1, identity: 0.968

cacattatcgtaagctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
********.**********************

27. spacer 6.1|1929351|31|CP031130|CRISPRCasFinder matches to position: 2564502-2564532, mismatch: 1, identity: 0.968

cacattatcgtaagctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
********.**********************

28. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 768360-768384, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcatttcgaaattctctgtgttg	Protospacer
**** ************** *****

29. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 1330559-1330583, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttatcgaaattctctgtgttg	Protospacer
****** ************ *****

30. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to position: 2289004-2289028, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttttgaaattctctatgttg	Protospacer
********.********** *****

31. spacer 3.1|755533|32|CP031130|CRISPRCasFinder matches to position: 111946-111977, mismatch: 2, identity: 0.938

acttgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
acttgcattgcctgtagaatttcttttcgaaa	Protospacer
**********..********************

32. spacer 3.1|755533|32|CP031130|CRISPRCasFinder matches to position: 590632-590663, mismatch: 2, identity: 0.938

acttgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
acttgcattgcctgtagaatttcttttcgaaa	Protospacer
**********..********************

33. spacer 3.1|755533|32|CP031130|CRISPRCasFinder matches to position: 761084-761115, mismatch: 2, identity: 0.938

acttgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
acttgcattgcctgtagaatttcttttcgaaa	Protospacer
**********..********************

34. spacer 3.1|755533|32|CP031130|CRISPRCasFinder matches to position: 761142-761173, mismatch: 2, identity: 0.938

acttgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
acttgcattgcctgtagaatttcttttcgaaa	Protospacer
**********..********************

35. spacer 3.1|755533|32|CP031130|CRISPRCasFinder matches to position: 761200-761231, mismatch: 2, identity: 0.938

acttgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
acttgcattgcctgtagaatttcttttcgaaa	Protospacer
**********..********************

36. spacer 3.1|755533|32|CP031130|CRISPRCasFinder matches to position: 1940094-1940125, mismatch: 2, identity: 0.938

acttgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
acttgcattgtctgtagaatttcctttcgaaa	Protospacer
***********.***********.********

37. spacer 3.1|755533|32|CP031130|CRISPRCasFinder matches to position: 2288985-2289016, mismatch: 2, identity: 0.938

acttgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
acttgcattgtctgtagaatttctttttgaaa	Protospacer
***********.***************.****

38. spacer 3.1|755533|32|CP031130|CRISPRCasFinder matches to position: 2614933-2614964, mismatch: 2, identity: 0.938

acttgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
acttgcattgcctgtagaatttcttttcgaaa	Protospacer
**********..********************

39. spacer 6.1|1929351|31|CP031130|CRISPRCasFinder matches to position: 760972-761002, mismatch: 2, identity: 0.935

cacattatcgtaagctgacttttcgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtaagct	Protospacer
********.***************** ****

40. spacer 6.1|1929351|31|CP031130|CRISPRCasFinder matches to position: 2289045-2289075, mismatch: 2, identity: 0.935

cacattatcgtaagctgacttttcgtcagct	CRISPR spacer
cacattattgtatgctgacttttcgtcagct	Protospacer
********.*** ******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031130_1	1.1\|215604\|25\|CP031130\|CRISPRCasFinder	215604-215628	25	LC371242	Escherichia phage EcS1 DNA, complete sequence	15447-15471	2	0.92
CP031130_6	6.1\|1929351\|31\|CP031130\|CRISPRCasFinder	1929351-1929381	31	NC_021536	Synechococcus phage S-IOM18 genomic sequence	159749-159779	8	0.742
CP031130_6	6.1\|1929351\|31\|CP031130\|CRISPRCasFinder	1929351-1929381	31	LN846932	Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome	10622-10652	8	0.742
CP031130_3	3.1\|755533\|32\|CP031130\|CRISPRCasFinder	755533-755564	32	MN693281	Marine virus AFVG_25M371, complete genome	6448-6479	9	0.719

1. spacer 1.1|215604|25|CP031130|CRISPRCasFinder matches to LC371242 (Escherichia phage EcS1 DNA, complete sequence) position: , mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctttttgttg	Protospacer
******* *********.*******

2. spacer 6.1|1929351|31|CP031130|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 8, identity: 0.742

cacattatcgtaagctgacttttcgtcagct	CRISPR spacer
aattttatcgtaaggtgagttttcgtcaagc	Protospacer
 *. ********** *** *********. .

3. spacer 6.1|1929351|31|CP031130|CRISPRCasFinder matches to LN846932 (Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome) position: , mismatch: 8, identity: 0.742

cacattatcgtaagctgacttttcgtcagct	CRISPR spacer
taatttatcgtaatctgatttttcgtcttca	Protospacer
.*  ********* ****.********  *

4. spacer 3.1|755533|32|CP031130|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 9, identity: 0.719

acttgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
ttttgcattgtttgtaggatttcttctaagtg	Protospacer
 .***************.*******.* .. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

693012 : 700832

Hokovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXG02853.1\|693012_694068_-	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
AXG02854.1\|694067_694754_-	DNA-binding response regulator	NA	NA	NA	NA
AXG02855.1\|694728_695202_-	DoxX family protein	NA	NA	NA	NA
AXG02856.1\|695543_695984_-	hypothetical protein	NA	NA	NA	NA
AXG02857.1\|696263_696848_-	hypothetical protein	NA	NA	NA	NA
AXG02858.1\|696946_697660_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AXG02859.1\|697663_698083_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
AXG02860.1\|698084_698753_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AXG02861.1\|699103_699697_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
AXG02862.1\|699680_700832_+	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	7.8e-23	35.7

DBSCAN-SWA_2

712803 : 727157

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXG02872.1\|712803_713862_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7
AXG02873.1\|714156_714699_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AXG02874.1\|714811_714910_+	hypothetical protein	NA	NA	NA	NA
AXG02875.1\|715322_716240_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	2.8e-07	22.4
AXG02876.1\|716329_716431_+	hypothetical protein	NA	NA	NA	NA
AXG02877.1\|716508_718014_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AXG02878.1\|718079_718325_-	hypothetical protein	NA	NA	NA	NA
AXG02879.1\|718354_718855_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AXG02880.1\|718874_719741_-	DMT family transporter	NA	NA	NA	NA
AXG02881.1\|720554_720953_+	protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AXG02882.1\|720915_723021_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AXG02883.1\|723138_724110_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AXG02884.1\|724290_724446_+	hypothetical protein	NA	NA	NA	NA
AXG04873.1\|724484_725456_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
AXG02885.1\|725442_726399_+	iron ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AXG02886.1\|726395_727157_+	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.5e-18	31.6

DBSCAN-SWA_3

811463 : 856955

Staphylococcus_virus(51.56%)

head,plate,capsid,integrase,terminase,tail,holin,portal

attL 809551:809567|attR 842998:843014

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
809551:809567	attL	NA	NA	NA	NA
AXG02971.1\|811463_812705_+	cysteine desulfurase	Q2XUY6	environmental_halophage	8.2e-111	44.8
AXG02972.1\|812694_813159_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA
AXG02973.1\|813309_814707_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
AXG02974.1\|814774_815824_-\|integrase	site-specific integrase	A1KWY3	Staphylococcus_virus	1.6e-203	100.0
AXG02975.1\|815886_816402_-	hypothetical protein	I1W624	Staphylococcus_phage	1.5e-37	100.0
AXG02976.1\|816405_816906_-	hypothetical protein	B7T094	Staphylococcus_virus	1.1e-71	100.0
AXG02977.1\|816956_817595_-	LexA family transcriptional regulator	E0Y3N7	Staphylococcus_virus	1.5e-116	100.0
AXG02978.1\|817785_818040_+	XRE family transcriptional regulator	A0A0E3T8G8	Staphylococcus_phage	8.2e-42	100.0
AXG02979.1\|818055_818847_+	phage antirepressor	E0Y3N9	Staphylococcus_virus	6.5e-146	100.0
AXG02980.1\|818847_819072_+	hypothetical protein	A0A0F6N4M2	Staphylococcus_phage	3.2e-34	100.0
AXG02981.1\|819111_819561_+	hypothetical protein	A0A0H3U2S4	Staphylococcus_phage	2.3e-79	100.0
AXG02982.1\|819574_819796_+	hypothetical protein	E0Y3P2	Staphylococcus_virus	1.5e-31	100.0
AXG02983.1\|819788_819956_+	DUF1270 family protein	S4V7J2	Staphylococcus_phage	4.0e-21	96.4
AXG02984.1\|819956_820277_+	hypothetical protein	S4V968	Staphylococcus_phage	4.8e-55	100.0
AXG02985.1\|820370_820631_+	DUF1108 family protein	A0A059T5A3	Staphylococcus_phage	1.2e-43	100.0
AXG02986.1\|820640_820862_+	DUF2483 domain-containing protein	A7TWM6	Staphylococcus_phage	3.2e-34	100.0
AXG02987.1\|820854_821634_+	chromosomal replication initiator DnaA	E0Y3P6	Staphylococcus_virus	5.6e-142	99.6
AXG04876.1\|821717_822218_+	single-strand DNA-binding protein	A7TWM8	Staphylococcus_phage	7.2e-90	100.0
AXG02988.1\|822230_822902_+	hypothetical protein	E0Y3P8	Staphylococcus_virus	5.8e-127	100.0
AXG02989.1\|823011_823671_-	hypothetical protein	E0Y3Q0	Staphylococcus_virus	1.4e-120	100.0
AXG02990.1\|823716_824487_+	replication protein	A0A2H4PQI2	Staphylococcus_phage	2.4e-116	100.0
AXG02991.1\|824496_825270_+	AAA family ATPase	A0A2H4PQI3	Staphylococcus_phage	4.6e-144	100.0
AXG02992.1\|825263_825422_+	hypothetical protein	A0A2H4PQI7	Staphylococcus_phage	4.5e-22	100.0
AXG02993.1\|825435_825657_+	DUF3269 family protein	A0A2H4PQI9	Staphylococcus_phage	2.2e-35	100.0
AXG02994.1\|825667_826072_+	DUF1064 domain-containing protein	G4KNP2	Staphylococcus_phage	1.6e-68	100.0
AXG02995.1\|826076_826262_+	DUF3113 family protein	A0A2H4PQI8	Staphylococcus_phage	3.2e-27	100.0
AXG02996.1\|826262_826631_+	hypothetical protein	A0A2H4PQJ6	Staphylococcus_phage	3.1e-50	100.0
AXG02997.1\|826634_826877_+	hypothetical protein	A0A2H4PQJ3	Staphylococcus_phage	6.6e-41	100.0
AXG02998.1\|826891_827143_+	DUF1024 family protein	A0A2H4PQK1	Staphylococcus_phage	9.2e-38	95.2
AXG02999.1\|827306_827588_+	hypothetical protein	A0A2I6PDX3	Staphylococcus_phage	8.5e-48	100.0
AXG03000.1\|827764_828298_+	dUTPase	E0Y3R2	Staphylococcus_virus	6.0e-95	100.0
AXG03001.1\|828334_828541_+	DUF1381 domain-containing protein	E0Y3R3	Staphylococcus_virus	1.7e-29	100.0
AXG03002.1\|828537_828711_+	transcriptional regulator	Q4ZBK0	Staphylococcus_phage	6.4e-22	100.0
AXG03003.1\|828711_829074_+	hypothetical protein	Q4ZDW4	Staphylococcus_virus	5.2e-58	94.1
AXG03004.1\|829074_829221_+	hypothetical protein	E0Y3R6	Staphylococcus_virus	1.7e-15	100.0
AXG03005.1\|829235_829655_+	transcriptional regulator	B7T0C4	Staphylococcus_virus	1.1e-70	100.0
AXG03006.1\|829841_830282_+\|terminase	terminase small subunit	E0Y3R8	Staphylococcus_virus	1.3e-74	100.0
AXG03007.1\|830268_831546_+\|terminase	PBSX family phage terminase large subunit	A0EWS5	Staphylococcus_virus	1.1e-248	99.8
AXG03008.1\|831556_833092_+\|portal	phage portal protein	Q4ZDN2	Staphylococcus_virus	3.8e-291	99.6
AXG03009.1\|833098_834094_+\|head	phage head morphogenesis protein	E0Y3K7	Staphylococcus_virus	3.4e-184	100.0
AXG03010.1\|834166_834337_+	hypothetical protein	Q4ZDF2	Staphylococcus_virus	3.3e-23	100.0
AXG03011.1\|834471_835086_+	DUF4355 domain-containing protein	I1W646	Staphylococcus_phage	2.9e-40	100.0
AXG03012.1\|835099_836074_+\|capsid	phage major capsid protein	E0Y3L0	Staphylococcus_virus	2.2e-183	100.0
AXG03013.1\|836095_836383_+	hypothetical protein	S4V6D9	Staphylococcus_phage	4.7e-46	100.0
AXG03014.1\|836391_836724_+\|head,tail	phage head-tail adapter protein	E0Y3L2	Staphylococcus_virus	7.1e-54	100.0
AXG03015.1\|836720_837023_+	hypothetical protein	E0Y3L3	Staphylococcus_virus	2.0e-50	100.0
AXG03016.1\|837022_837370_+	hypothetical protein	E0Y3L4	Staphylococcus_virus	4.1e-60	100.0
AXG03017.1\|837381_837765_+	hypothetical protein	E0Y3L5	Staphylococcus_virus	2.6e-68	100.0
AXG03018.1\|837783_838365_+\|tail	phage major tail protein, TP901-1 family	A0A0F6N3L8	Staphylococcus_phage	4.9e-106	100.0
AXG03019.1\|838426_838792_+\|tail	phage tail protein	E0Y3L7	Staphylococcus_virus	9.6e-60	100.0
AXG03020.1\|838821_839166_+	hypothetical protein	A0A0F6N3F7	Staphylococcus_phage	2.5e-57	100.0
AXG03021.1\|839182_842650_+	hypothetical protein	E0Y3L9	Staphylococcus_virus	1.2e-252	100.0
AXG03022.1\|842662_843610_+\|tail	phage tail family protein	E0Y3M0	Staphylococcus_virus	2.8e-183	100.0
842998:843014	attR	NA	NA	NA	NA
AXG03023.1\|843618_845520_+	peptidase	E0Y3M1	Staphylococcus_virus	0.0e+00	100.0
AXG03024.1\|845534_847445_+	hypothetical protein	Q8SDT4	Staphylococcus_phage	0.0e+00	100.0
AXG03025.1\|847444_849268_+\|plate	phage baseplate upper protein	E0Y3M3	Staphylococcus_virus	0.0e+00	100.0
AXG03026.1\|849267_849645_+	DUF2977 domain-containing protein	E0Y3M4	Staphylococcus_virus	2.6e-60	100.0
AXG04877.1\|849647_849821_+	XkdX family protein	A0A0F6N3L7	Staphylococcus_phage	6.6e-27	100.0
AXG03027.1\|849861_850161_+	DUF2951 domain-containing protein	A0A0F6N3M6	Staphylococcus_phage	9.9e-47	100.0
AXG03028.1\|850297_852196_+	CHAP domain-containing protein	E0Y3M7	Staphylococcus_virus	0.0e+00	100.0
AXG03029.1\|852208_853447_+	DUF2479 domain-containing protein	E0Y3M8	Staphylococcus_virus	3.5e-210	100.0
AXG03030.1\|853451_853847_+	hypothetical protein	Q4ZBP5	Staphylococcus_phage	2.7e-68	100.0
AXG03031.1\|853903_854158_+\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AXG03032.1\|854169_854925_+	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
AXG03033.1\|855416_856211_+	phosphatidylinositol kinase	E0Y3N2	Staphylococcus_virus	4.9e-149	100.0
AXG03034.1\|856217_856955_+	hypothetical protein	E0Y3N3	Staphylococcus_virus	4.4e-136	100.0

DBSCAN-SWA_4

1017278 : 1025751

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXG03182.1\|1017278_1017761_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
AXG03183.1\|1017747_1018872_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AXG03184.1\|1018875_1019580_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AXG03185.1\|1019579_1019843_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AXG03186.1\|1019844_1020516_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AXG03187.1\|1020508_1022698_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.0e-140	39.7
AXG03188.1\|1022676_1024161_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.2e-45	31.5
AXG03189.1\|1024153_1025182_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
AXG03190.1\|1025184_1025751_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.6e-29	40.1

DBSCAN-SWA_5

1383976 : 1466163

Staphylococcus_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXG03531.1\|1383976_1385296_-\|transposase	ISL3-like element IS1181 family transposase	NA	NA	NA	NA
AXG03532.1\|1385660_1386062_-	MSA protein	NA	NA	NA	NA
AXG03533.1\|1386258_1386459_-	cold-shock protein CspA	Q9AZD3	Lactococcus_phage	8.4e-18	66.2
AXG03534.1\|1386493_1386682_+	hypothetical protein	NA	NA	NA	NA
AXG03535.1\|1386629_1386938_-	DUF1033 family protein	NA	NA	NA	NA
AXG03536.1\|1387100_1387370_+	acylphosphatase	NA	NA	NA	NA
AXG03537.1\|1387388_1388018_+	5-bromo-4-chloroindolyl phosphate hydrolase	NA	NA	NA	NA
AXG03538.1\|1388049_1389186_+	toxic anion resistance protein	A0A291I9K4	Lactobacillus_phage	5.7e-34	28.3
AXG03539.1\|1389258_1390602_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
AXG03540.1\|1390826_1392713_-	nitric oxide reductase activation protein NorD	NA	NA	NA	NA
AXG03541.1\|1392726_1393518_-	MoxR family ATPase	R4TG24	Halovirus	3.3e-12	34.2
AXG03542.1\|1393698_1393902_-	hypothetical protein	NA	NA	NA	NA
AXG03543.1\|1393930_1394740_-	VOC family protein	NA	NA	NA	NA
AXG03544.1\|1395319_1396588_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
AXG03545.1\|1396601_1399400_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA
AXG03546.1\|1399683_1401039_-	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	3.5e-14	27.8
AXG03547.1\|1401035_1401695_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.1e-34	33.8
AXG03548.1\|1402165_1402366_-	hypothetical protein	NA	NA	NA	NA
AXG03549.1\|1402482_1403097_-	phosphatase PAP2 family protein	NA	NA	NA	NA
AXG03550.1\|1403113_1404184_-	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA
AXG03551.1\|1404195_1404705_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXG03552.1\|1405104_1406595_-	PDZ domain-containing protein	A0A0R6PIZ1	Moraxella_phage	2.9e-22	30.5
AXG03553.1\|1406786_1407008_-	YozE family protein	NA	NA	NA	NA
AXG03554.1\|1407007_1407508_-	glucose-specific phosphotransferase enzyme IIA component	NA	NA	NA	NA
AXG03555.1\|1407519_1407948_-	peptide-methionine (R)-S-oxide reductase	NA	NA	NA	NA
AXG03556.1\|1407940_1408474_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA
AXG03557.1\|1408559_1409399_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	2.3e-48	77.3
AXG03558.1\|1409413_1409893_-	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	2.0e-73	79.2
AXG03559.1\|1410092_1411049_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	6.2e-167	84.9
AXG03560.1\|1411472_1411910_-	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA
AXG03561.1\|1411925_1413050_-	virulence factor C	NA	NA	NA	NA
AXG03562.1\|1413087_1413339_-	scaffolding protein	NA	NA	NA	NA
AXG03563.1\|1413350_1413572_-	zinc-finger domain-containing protein	NA	NA	NA	NA
AXG03564.1\|1413789_1414494_+	VUT family protein	A0A2H4J2N7	uncultured_Caudovirales_phage	8.4e-12	23.8
AXG03565.1\|1414975_1415377_+	ribonuclease H	NA	NA	NA	NA
AXG03566.1\|1447477_1448869_-	quinolone resistance protein NorB	NA	NA	NA	NA
AXG03567.1\|1449024_1450347_-	amino acid permease	NA	NA	NA	NA
AXG03568.1\|1450377_1451418_-	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA	NA	NA	NA
AXG03569.1\|1451512_1452631_-	alanine dehydrogenase	NA	NA	NA	NA
AXG03570.1\|1453105_1453984_-	5'-3' exonuclease	S5M4P0	Bacillus_phage	1.4e-19	29.5
AXG03571.1\|1454003_1457444_-	dynamin family protein	NA	NA	NA	NA
AXG03572.1\|1458441_1459593_+\|transposase	transposase	P97010	Streptococcus_pyogenes_phage	9.0e-11	31.0
AXG04894.1\|1459631_1461659_+\|transposase	transposase	NA	NA	NA	NA
AXG03573.1\|1461667_1462033_+\|transposase	transposase	NA	NA	NA	NA
AXG03574.1\|1462061_1462481_-	YolD-like family protein	U3PG23	Staphylococcus_phage	1.1e-30	54.2
AXG03575.1\|1462840_1464160_-\|transposase	ISL3-like element IS1181 family transposase	NA	NA	NA	NA
AXG03576.1\|1464483_1466163_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	5.5e-243	77.4

DBSCAN-SWA_6

1576357 : 1584687

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXG03694.1\|1576357_1577143_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
AXG03695.1\|1577268_1578159_-	endonuclease	A0A2H4UU70	Bodo_saltans_virus	3.4e-26	36.0
AXG03696.1\|1578168_1579515_-	DEAD/DEAH box family ATP-dependent RNA helicase	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
AXG03697.1\|1579628_1580729_-	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
AXG03698.1\|1580731_1581409_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
AXG03699.1\|1581539_1582646_-	RNA polymerase sigma factor SigA	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
AXG03700.1\|1582869_1584687_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.6e-54	36.0

DBSCAN-SWA_7

1652467 : 1661507

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXG03767.1\|1652467_1652986_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
AXG03768.1\|1653007_1655278_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	2.4e-63	29.3
AXG03769.1\|1655480_1657760_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AXG03770.1\|1658034_1658295_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AXG03771.1\|1658313_1659453_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.6e-84	44.7
AXG03772.1\|1659475_1660501_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AXG03773.1\|1660502_1661507_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_8

1801620 : 1833587

Staphylococcus_phage(93.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXG03897.1\|1801620_1802622_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
AXG03898.1\|1802743_1803208_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
AXG03899.1\|1803220_1804402_-	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	6.6e-227	99.7
AXG03900.1\|1804412_1805045_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
AXG04905.1\|1805051_1806083_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.0e-196	98.8
AXG03901.1\|1806575_1808078_-	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
AXG03902.1\|1808600_1808915_+	ArsR family transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
AXG03903.1\|1808914_1810207_+	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
AXG03904.1\|1810293_1811148_-	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AXG03905.1\|1811423_1811648_-	hypothetical protein	NA	NA	NA	NA
AXG03906.1\|1811846_1812317_+	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
AXG03907.1\|1812429_1812873_+	competence protein ComK	NA	NA	NA	NA
AXG03908.1\|1812859_1813303_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	7.1e-57	98.0
AXG03909.1\|1813598_1814234_+\|protease	CPBP family intramembrane metalloprotease SdpA	NA	NA	NA	NA
AXG03910.1\|1814673_1815387_-	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AXG03911.1\|1815646_1815949_+	hypothetical protein	NA	NA	NA	NA
AXG03912.1\|1816204_1816570_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AXG03913.1\|1816566_1816920_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	1.0e-21	94.9
AXG03914.1\|1818917_1819751_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.5e-158	99.6
AXG03915.1\|1819962_1820871_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
AXG03916.1\|1820995_1822189_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
AXG03917.1\|1822560_1824153_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AXG04906.1\|1824405_1825152_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	1.3e-143	99.6
AXG03918.1\|1825156_1825630_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	5.5e-84	99.4
AXG03919.1\|1825695_1825953_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AXG03920.1\|1825949_1826951_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	5.1e-188	98.8
AXG03921.1\|1826955_1828434_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.5e-284	98.2
AXG03922.1\|1828592_1829048_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	1.0e-79	99.3
AXG03923.1\|1829350_1830001_+	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	5.2e-56	98.6
AXG03924.1\|1830081_1831077_+	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	9.6e-70	94.4
AXG03925.1\|1831150_1831777_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	1.3e-88	91.3
AXG03926.1\|1831817_1832159_+	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	3.9e-55	95.6
AXG03927.1\|1832259_1832832_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	1.6e-24	93.1
AXG03928.1\|1833029_1833587_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	3.1e-78	97.5

DBSCAN-SWA_9

1838818 : 1851070

Staphylococcus_phage(100.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXG03936.1\|1838818_1839937_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	7.6e-39	35.1
AXG03937.1\|1839929_1841669_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	9.9e-288	99.2
AXG03938.1\|1841649_1841784_-	hypothetical protein	NA	NA	NA	NA
AXG03939.1\|1841848_1842568_-\|protease	serine protease SplD	A0A2H4PQP9	Staphylococcus_phage	5.1e-129	99.2
AXG03940.1\|1842688_1843408_-\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.2e-130	99.2
AXG03941.1\|1843465_1844188_-\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	6.4e-132	100.0
AXG03942.1\|1844312_1845020_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	1.6e-127	97.9
AXG03943.1\|1845455_1845674_-	hypothetical protein	NA	NA	NA	NA
AXG03944.1\|1845983_1846562_+	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	1.1e-49	59.6
AXG03945.1\|1847035_1847254_-	hypothetical protein	A0A2H4PQH0	Staphylococcus_phage	1.4e-26	81.9
AXG03946.1\|1847509_1847983_+	hypothetical protein	NA	NA	NA	NA
AXG03947.1\|1847987_1848779_+	DUF1828 domain-containing protein	NA	NA	NA	NA
AXG03948.1\|1849149_1850133_-	bi-component leukocidin LukED subunit D	A0A2H4PQH7	Staphylococcus_phage	1.8e-185	99.4
AXG03949.1\|1850134_1851070_-	beta-channel forming cytolysin	A0A2H4PQI5	Staphylococcus_phage	5.1e-174	99.7

DBSCAN-SWA_10

1940694 : 1981152

Bacillus_virus(27.27%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXG04035.1\|1940694_1942122_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B	NA	NA	NA	NA
AXG04036.1\|1942134_1943592_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A	NA	NA	NA	NA
AXG04037.1\|1943593_1943896_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	NA	NA	NA	NA
AXG04038.1\|1944263_1945802_+	sodium:proline symporter	NA	NA	NA	NA
AXG04039.1\|1945890_1947090_-	CamS family sex pheromone protein	NA	NA	NA	NA
AXG04040.1\|1947102_1949106_-	DNA ligase (NAD(+)) LigA	A0A0K2QQN8	Ralstonia_phage	5.8e-114	36.1
AXG04041.1\|1949109_1951302_-	DNA helicase PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
AXG04042.1\|1951298_1951991_-	geranylgeranylglyceryl/heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA
AXG04043.1\|1952162_1952465_-	hypothetical protein	NA	NA	NA	NA
AXG04044.1\|1952573_1953869_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9
AXG04045.1\|1954729_1955896_+\|protease	cysteine protease staphopain A	NA	NA	NA	NA
AXG04046.1\|1955926_1956253_+	staphostatin A	NA	NA	NA	NA
AXG04047.1\|1956544_1956718_-	NETI motif-containing protein	NA	NA	NA	NA
AXG04048.1\|1956698_1957301_-	DUF2179 domain-containing protein	NA	NA	NA	NA
AXG04049.1\|1957571_1958393_-	NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-69	52.7
AXG04050.1\|1958385_1959855_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.5e-108	45.1
AXG04051.1\|1960038_1961115_+	nitric oxide synthase oxygenase	NA	NA	NA	NA
AXG04052.1\|1961134_1961929_+	ACT domain-containing protein	NA	NA	NA	NA
AXG04053.1\|1962000_1962108_+	hypothetical protein	NA	NA	NA	NA
AXG04054.1\|1962118_1963681_-	SLC13 family permease	NA	NA	NA	NA
AXG04055.1\|1963885_1964983_-	pectate lyase	U5PWM6	Bacillus_phage	2.5e-47	34.9
AXG04056.1\|1965354_1965915_+	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
AXG04057.1\|1965967_1966897_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
AXG04058.1\|1967089_1967263_-	hypothetical protein	NA	NA	NA	NA
AXG04059.1\|1967314_1968694_+	aldehyde dehydrogenase	NA	NA	NA	NA
AXG04060.1\|1968813_1969842_-	hypothetical protein	NA	NA	NA	NA
AXG04061.1\|1970300_1970681_-	penicillinase repressor BlaI	NA	NA	NA	NA
AXG04062.1\|1970670_1972428_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA
AXG04063.1\|1972534_1973380_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	A0A1B0VBP7	Salmonella_phage	3.4e-31	34.3
AXG04064.1\|1973430_1975110_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	5.5e-243	77.4
AXG04065.1\|1975433_1976753_+\|transposase	ISL3-like element IS1181 family transposase	NA	NA	NA	NA
AXG04066.1\|1977112_1977532_+	YolD-like family protein	U3PG23	Staphylococcus_phage	1.1e-30	54.2
AXG04067.1\|1977560_1977926_-\|transposase	transposase	NA	NA	NA	NA
AXG04911.1\|1977934_1979962_-\|transposase	transposase	NA	NA	NA	NA
AXG04068.1\|1980000_1981152_-\|transposase	transposase	P97010	Streptococcus_pyogenes_phage	9.0e-11	31.0

DBSCAN-SWA_11

1994692 : 2040449

Staphylococcus_phage(98.48%)

head,capsid,integrase,terminase,protease,tail,holin,portal

attL 2014109:2014126|attR 2038436:2038453

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXG04084.1\|1994692_1994893_+	hypothetical protein	A0A1P8L6A7	Staphylococcus_phage	3.4e-27	100.0
AXG04085.1\|1995264_1995444_+	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
AXG04086.1\|1995467_1995776_+	hypothetical protein	M9NTD8	Staphylococcus_phage	2.1e-39	100.0
AXG04087.1\|1995754_1996015_+	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
AXG04088.1\|1997091_1997541_+	chemotaxis inhibitory protein	A0A1P8L6A8	Staphylococcus_phage	1.1e-78	100.0
AXG04089.1\|1997635_1998094_-	amidase	R9QTN8	Staphylococcus_phage	4.9e-85	98.7
AXG04090.1\|1998620_1999112_-	staphylokinase	A0A1X9H028	Staphylococcus_phage	9.5e-87	100.0
AXG04091.1\|1999302_2000058_-	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
AXG04092.1\|2000069_2000324_-\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AXG04093.1\|2000375_2000483_+	hypothetical protein	NA	NA	NA	NA
AXG04094.1\|2000535_2000712_-\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
AXG04095.1\|2000861_2001158_-	DUF2951 domain-containing protein	D2JLG2	Staphylococcus_phage	2.9e-46	100.0
AXG04096.1\|2001215_2001503_-	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
AXG04097.1\|2001549_2001702_-	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
AXG04098.1\|2001691_2005477_-	hypothetical protein	A0A1X9H0H3	Staphylococcus_phage	0.0e+00	98.5
AXG04099.1\|2005492_2006977_-\|tail	phage tail protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
AXG04100.1\|2006973_2011503_-\|tail	phage tail tape measure protein	A0A2I6PDK2	Staphylococcus_phage	0.0e+00	99.8
AXG04101.1\|2011747_2012098_-	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
AXG04102.1\|2012147_2012372_-	hypothetical protein	A0A075LYE8	Staphylococcus_phage	3.0e-32	100.0
AXG04103.1\|2012413_2013058_-\|tail	phage tail protein	A0A1X9H0J2	Staphylococcus_phage	1.5e-119	100.0
AXG04104.1\|2013058_2013466_-	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
AXG04105.1\|2013462_2013867_-	hypothetical protein	G4KNQ5	Staphylococcus_phage	2.1e-68	99.3
AXG04106.1\|2013863_2014226_-\|head,tail	phage head-tail adapter protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
2014109:2014126	attL	NA	NA	NA	NA
AXG04107.1\|2014209_2014494_-\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
AXG04108.1\|2014483_2014768_-	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	1.8e-45	100.0
AXG04109.1\|2014787_2015933_-\|capsid	phage major capsid protein	G4KNQ3	Staphylococcus_phage	9.6e-215	100.0
AXG04110.1\|2015956_2016694_-\|protease	Clp protease ClpP	G4KNQ2	Staphylococcus_phage	1.8e-129	100.0
AXG04111.1\|2016677_2017865_-\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
AXG04112.1\|2017880_2019542_-\|terminase	terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
AXG04113.1\|2019538_2019883_-	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
AXG04114.1\|2020013_2020313_-	HNH endonuclease	A0EWY8	Staphylococcus_phage	4.6e-52	100.0
AXG04115.1\|2020544_2020961_-	transcriptional regulator	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
AXG04116.1\|2020988_2021189_-	DUF1514 domain-containing protein	A0A2I6PDV9	Staphylococcus_phage	4.0e-28	98.5
AXG04117.1\|2021188_2021338_-	transcriptional regulator	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
AXG04118.1\|2021334_2021721_-	hypothetical protein	W5R986	Staphylococcus_phage	3.0e-64	100.0
AXG04119.1\|2021717_2021924_-	DUF1381 domain-containing protein	A0A0H3U2R7	Staphylococcus_phage	1.3e-29	100.0
AXG04120.1\|2021920_2022166_-	hypothetical protein	A0A2I6PDW7	Staphylococcus_phage	5.0e-36	100.0
AXG04121.1\|2022202_2022739_-	dUTPase	A0A0H3U2Z8	Staphylococcus_phage	7.2e-96	100.0
AXG04122.1\|2022888_2023143_-	DUF1024 family protein	A0A0H3U469	Staphylococcus_phage	5.0e-39	100.0
AXG04123.1\|2023157_2023400_-	hypothetical protein	Q4ZDP7	Staphylococcus_virus	2.1e-39	95.0
AXG04124.1\|2023403_2023772_-	hypothetical protein	A0A0H3U2T3	Staphylococcus_phage	2.0e-49	100.0
AXG04125.1\|2023784_2024189_-	RusA family crossover junction endodeoxyribonuclease	A0EWX6	Staphylococcus_phage	1.9e-72	100.0
AXG04126.1\|2024197_2024416_-	hypothetical protein	A0A2I6PDG4	Staphylococcus_phage	1.0e-37	100.0
AXG04127.1\|2024422_2025316_-	DnaD domain protein	A0A2I6PDG7	Staphylococcus_phage	5.5e-141	99.3
AXG04128.1\|2025345_2025816_-	single-stranded DNA-binding protein	A0EWX3	Staphylococcus_phage	1.3e-80	98.7
AXG04129.1\|2025816_2026434_-	MBL fold metallo-hydrolase	A0A2I6PDI9	Staphylococcus_phage	9.1e-87	100.0
AXG04130.1\|2026514_2027435_-	recombinase	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
AXG04131.1\|2027436_2029380_-	ATPase	S4V9K6	Staphylococcus_phage	0.0e+00	100.0
AXG04132.1\|2029388_2029652_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
AXG04133.1\|2029660_2029921_-	DUF1108 family protein	A0A1P8L6F5	Staphylococcus_phage	5.2e-44	100.0
AXG04134.1\|2029925_2030228_-	DUF2482 family protein	A0A1P8L6F8	Staphylococcus_phage	7.0e-48	100.0
AXG04135.1\|2030322_2030484_-	DUF1270 family protein	A0A1P8L6G0	Staphylococcus_phage	1.9e-20	100.0
AXG04136.1\|2030480_2030804_-	DUF771 domain-containing protein	A0A075LYF5	Staphylococcus_phage	3.0e-57	100.0
AXG04137.1\|2030858_2031239_+	DUF2513 domain-containing protein	Q9T1Z5	Staphylococcus_phage	3.4e-68	99.2
AXG04138.1\|2031225_2031423_-	hypothetical protein	O80075	Staphylococcus_phage	3.5e-24	87.7
AXG04139.1\|2031438_2032191_-	oxidoreductase	M9NTH5	Staphylococcus_phage	1.1e-139	100.0
AXG04140.1\|2032241_2032571_+	hypothetical protein	M9NS98	Staphylococcus_phage	2.7e-53	100.0
AXG04141.1\|2032559_2032775_-	DUF2829 domain-containing protein	A0A0H3U4C7	Staphylococcus_phage	4.8e-35	100.0
AXG04142.1\|2032771_2033053_-	XRE family transcriptional regulator	A0A2I6PF09	Staphylococcus_phage	4.6e-38	96.5
AXG04143.1\|2033049_2033223_-	transcriptional regulator	NA	NA	NA	NA
AXG04144.1\|2033185_2033899_+	XRE family transcriptional regulator	M9NUL0	Staphylococcus_phage	1.2e-130	100.0
AXG04145.1\|2033914_2034847_+	ATP-dependent helicase	A0A2I6PEZ7	Staphylococcus_phage	5.7e-173	100.0
AXG04146.1\|2034852_2035194_+	hypothetical protein	A0A2I6PF04	Staphylococcus_phage	4.6e-56	100.0
AXG04147.1\|2035397_2035580_+	hypothetical protein	M9NSW6	Staphylococcus_phage	4.1e-27	100.0
AXG04148.1\|2035679_2036144_+	hypothetical protein	A0EWV3	Staphylococcus_phage	1.1e-28	100.0
AXG04149.1\|2036202_2037240_+\|integrase	site-specific integrase	A0EWV2	Staphylococcus_phage	9.1e-180	100.0
AXG04150.1\|2038358_2039375_-	bi-component leukocidin LukGH subunit G	A0A2I6PER8	Staphylococcus_phage	5.1e-26	29.3
2038436:2038453	attR	NA	NA	NA	NA
AXG04151.1\|2039396_2040449_-	bi-component leukocidin LukGH subunit H	A0A2I6PER8	Staphylococcus_phage	2.4e-34	31.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031130

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection