CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP030220	Salmonella enterica strain SA20021456 plasmid pSA20021456.1, complete sequence	0 crisprs	DEDDh	0	0	1
CP030222	Salmonella enterica strain SA20021456 plasmid pSA20021456.3, complete sequence	0 crisprs	NA	0	0	0
CP030219	Salmonella enterica strain SA20021456 chromosome, complete genome	2 crisprs	cas3,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	1	25	12
CP030221	Salmonella enterica strain SA20021456 plasmid pSA20021456.2, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

92391 : 104779

Enterobacteria_phage(25.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD74640.1\|92391_93072_-	DNA methylase	A0A2I7RE86	Vibrio_phage	2.8e-28	36.0
AXD74641.1\|93448_93796_-	hypothetical protein	NA	NA	NA	NA
AXD74642.1\|93828_94764_-	DUF1281 domain-containing protein	NA	NA	NA	NA
AXD74643.1\|95293_95716_+	peptidase	A0A1W6JNS2	Morganella_phage	3.5e-29	54.0
AXD74644.1\|95715_96987_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	4.3e-155	64.0
AXD74645.1\|97125_98097_-	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	4.0e-113	68.2
AXD74646.1\|98093_99299_-	ParA family protein	Q1MVJ3	Enterobacteria_phage	6.6e-206	89.7
AXD74647.1\|99661_100312_+	serine recombinase	M9Q1K0	Clostridium_phage	1.7e-06	28.6
AXD74648.1\|100472_100745_-	hypothetical protein	NA	NA	NA	NA
AXD74716.1\|100819_101761_+\|transposase	ISNCY family transposase	Q2A0A7	Sodalis_phage	2.9e-76	52.5
AXD74649.1\|101757_102366_-	hypothetical protein	NA	NA	NA	NA
AXD74650.1\|102427_102556_+	hypothetical protein	NA	NA	NA	NA
AXD74651.1\|102515_102908_-	hypothetical protein	NA	NA	NA	NA
AXD74652.1\|103249_104779_+	hypothetical protein	A0A2K9L3I8	Tupanvirus	3.4e-42	28.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP030219

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CRISPR-Cas detection and classification

Crispr_ID: CP030219_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030219_1

1041794-1041874

Orphan

Consensus_repeat	Method
TTAGCAATTTCTCCGAAATTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030219_1

>merge|CP030219|1|1041794-1041874|CRISPRCasFinder
TTAGCAATTTCTCCGAAATTGAATTTTCTTTCCGCGTACCACTTCATTATTTTTCGTCTTAGCAATTTCTTCGAAATTGAA

>CP030219|1|1|1041794-1041874|CRISPRCasFinder
TTAGCAATTTCTCCGAAATTGAA	TTTTCTTTCCGCGTACCACTTCATTATTTTTCGTC
TTAGCAATTTCTTCGAAATTGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP030219.1\|AXD70442.1\|1035063_1036140_+\|N-acetylneuraminic-acid-mutarotase	unknown	unknown	gnl\|CDD\|237617
CP030219.1\|AXD70443.1\|1036239_1038345_+\|sialidase	unknown	unknown	gnl\|CDD\|271234
CP030219.1\|AXD70449.1\|1043024_1044050_-\|P-type-DNA-transfer-ATPase-VirB11	unknown	unknown	gnl\|CDD\|274301
CP030219.1\|AXD70446.1\|1041949_1042255_-\|dpoa-decarboxylase	unknown	unknown	unknown
CP030219.1\|AXD70448.1\|1042629_1043028_-\|Cag-pathogenicity-island-protein-Cag12	unknown	unknown	gnl\|CDD\|372486
CP030219.1\|AXD70440.1\|1032711_1034169_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|179668
CP030219.1\|AXD70447.1\|1042288_1042594_-\|conjugal-transfer-protein	unknown	unknown	unknown
CP030219.1\|AXD70453.1\|1047160_1048237_-\|conjugal-transfer-protein-TrbL	unknown	unknown	gnl\|CDD\|377390
CP030219.1\|AXD70438.1\|1030602_1031559_+\|DNA-primase	unknown	unknown	gnl\|CDD\|226680
CP030219.1\|AXD70454.1\|1048249_1048474_-\|hypothetical-protein	unknown	unknown	unknown
CP030219.1\|AXD70436.1\|1027241_1028753_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|163472
CP030219.1\|AXD70455.1\|1048485_1049187_-\|type-IV-secretion-system-protein-VirB5	unknown	unknown	gnl\|CDD\|369643
CP030219.1\|AXD70441.1\|1034298_1035018_+\|N-acetylneuraminic-acid-channel-protein	unknown	unknown	gnl\|CDD\|182179
CP030219.1\|AXD70444.1\|1038673_1039426_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-MobC	unknown	unknown	unknown
CP030219.1\|AXD70452.1\|1046259_1046943_-\|type-IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|377310
CP030219.1\|AXD70439.1\|1031700_1032312_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|224766
CP030219.1\|AXD70445.1\|1039434_1041171_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|274760
CP030219.1\|AXD70451.1\|1045354_1046263_-\|P-type-conjugative-transfer-protein-VirB9	unknown	unknown	gnl\|CDD\|274296
CP030219.1\|AXD70450.1\|1044039_1045314_-\|type-VI-secretion-protein	unknown	unknown	gnl\|CDD\|319755
CP030219.1\|AXD70437.1\|1028886_1029882_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271175

Protein	Function_ID	Function_description	E-value
CP030219.1\|AXD70442.1\|1035063_1036140_+\|N-acetylneuraminic-acid-mutarotase	gnl\|CDD\|237617	PRK14131, PRK14131, N-acetylneuraminate epimerase.	2.73386e-162
CP030219.1\|AXD70443.1\|1036239_1038345_+\|sialidase	gnl\|CDD\|271234	cd15482, Sialidase_non-viral, Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases.	1.25146e-43
CP030219.1\|AXD70452.1\|1046259_1046943_-\|type-IV-secretion-system-protein	gnl\|CDD\|377310	pfam04335, VirB8, VirB8 protein. VirB8 is a bacterial virulence protein with cytoplasmic, transmembrane, and periplasmic regions. It is thought that it is a primary constituent of a DNA transporter. The periplasmic region interacts with VirB9, VirB10, and itself. This family also includes the conjugal transfer protein family TrbF, a family of proteins known to be involved in conjugal transfer. The TrbF protein is thought to compose part of the pilus required for transfer. This domain has a similar fold to the NTF2 protein.	1.87599e-50
CP030219.1\|AXD70448.1\|1042629_1043028_-\|Cag-pathogenicity-island-protein-Cag12	gnl\|CDD\|372486	pfam13117, Cag12, Cag pathogenicity island protein Cag12. This is a Proteobacterial family of Cag pathogenicity island proteins.	6.05483e-32
CP030219.1\|AXD70438.1\|1030602_1031559_+\|DNA-primase	gnl\|CDD\|226680	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair].	5.18726e-98
CP030219.1\|AXD70436.1\|1027241_1028753_+\|hypothetical-protein	gnl\|CDD\|163472	TIGR03760, ICE_TraI_Pfluor, integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.	4.40421e-76
CP030219.1\|AXD70455.1\|1048485_1049187_-\|type-IV-secretion-system-protein-VirB5	gnl\|CDD\|369643	pfam07996, T4SS, Type IV secretion system proteins. Members of this family are components of the type IV secretion system. They mediate intracellular transfer of macromolecules via a mechanism ancestrally related to that of bacterial conjugation machineries.	1.88644e-36
CP030219.1\|AXD70449.1\|1043024_1044050_-\|P-type-DNA-transfer-ATPase-VirB11	gnl\|CDD\|274301	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.	2.23731e-105
CP030219.1\|AXD70453.1\|1047160_1048237_-\|conjugal-transfer-protein-TrbL	gnl\|CDD\|377390	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein.	3.34059e-36
CP030219.1\|AXD70439.1\|1031700_1032312_-\|flavin-reductase-family-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	1.1972e-24
CP030219.1\|AXD70440.1\|1032711_1034169_+\|MFS-transporter	gnl\|CDD\|179668	PRK03893, PRK03893, putative sialic acid transporter; Provisional.	0
CP030219.1\|AXD70451.1\|1045354_1046263_-\|P-type-conjugative-transfer-protein-VirB9	gnl\|CDD\|274296	TIGR02781, Protein_virB9, P-type conjugative transfer protein VirB9. The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system . VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein. [Cellular processes, Conjugation].	1.03391e-91
CP030219.1\|AXD70450.1\|1044039_1045314_-\|type-VI-secretion-protein	gnl\|CDD\|319755	cd16429, VirB10, VirB10 forms part of core complex in Type IV secretion system (T4SS). This family contains VirB10, a component of the type IV secretion system (T4SS), including homologs TrbI, TraF, TrwE and TraL. T4S system is employed by pathogenic bacteria to export virulence DNAs and/or proteins directly from the bacterial cytoplasm into the host cell. It forms a large multiprotein complex consisting of 12 proteins termed VirB1-11 and VirD4. VirB10, interacts with VirB7 and VirB9, forming the membrane-spanning 'core complex' (CC), around which all other components assemble. The CC is inserted in both, the outer and inner membranes, playing a fundamental role as a scaffold for the rest of the T4SS components and actively participating in T4S substrate transfer through the bacterial envelope via conformational changes regulating channel opening and closing. TrwE in R33 plasmid has been shown to be anchored to the inner membrane and its C-terminal is necessary for conjugation; the transmembrane domains of TrwB and TrwE are involved in TrwB-TrwE interactions. TraF protein of the RP4 plasmid is involved in circularization of pilin subunits of P-type pili. In gonococcal genetic island (GGI) of Neisseria gonorrhoeae, T4SS encodes TrbI and circularization occurs via a covalent intermediate between the C terminus of putative pilin protein TraA and TrbI.	3.28939e-57
CP030219.1\|AXD70445.1\|1039434_1041171_-\|MFS-transporter	gnl\|CDD\|274760	TIGR03743, SXT_TraD, conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains. [Mobile and extrachromosomal element functions, Other].	2.27721e-11
CP030219.1\|AXD70441.1\|1034298_1035018_+\|N-acetylneuraminic-acid-channel-protein	gnl\|CDD\|182179	PRK09980, ompL, porin OmpL.	1.0891e-22
CP030219.1\|AXD70437.1\|1028886_1029882_+\|site-specific-integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	5.60578e-22

>CP030219.1|AXD70445.1|1039434_1041171_-|MFS-transporter
MGSHLMQRLNAFADAFSFFLLWLQNSPVILSLLAGLTLPFIFHLPREDRKNAPFWLKSVACVSIFFFISGTLSPLTIQGLSYFFKPLDNNILFRVPLWIMTVTFTAAGLIFHIAARRLLAGEIDNFKHRLIKKSKLERNARTDVRKVKELLPDSTEYNPLDYIDLNKGVFIGLNKDDQPQYITIKEFRTQHAAIIGTTGSGKGVTATVLLYQAILSGEAVFVEDPKDDEWAPHVLREACKKAGKKFTLINLNKLNFQLDLLADISHEQLEELFNAGFSLAKKGEASDFYRIKDRRAARNTAAIHEKGMTLRDLFNTDFVQSLREDVPAFFGELEEIALVNSINATNGFSLKEVFDEGGCCYIIGSTRNQKIISAQRMILTRLIQIAETRDRINSTPRTVAIFLDELKYHLSRPALEGLGTARDKGVHIFMAFQATDDLRDCPSDLNGDSVIGAVIENAKFKLIYKIQNPETAEWAARMTGSILVDDEMRKVRTDLSLTEKVDTDRMIRQAESYYVDSNMFLNLPEKVGFVFTSTELPRATKMFQVQVKKENIELLSFEYKQATPGKNESQEHKPSINL
>CP030219.1|AXD70444.1|1038673_1039426_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-MobC
MLIHNVAERKEAANRKMLALLTFLKEETYADFKTLKKVVGFRGKGHRPTYALLNKAVALGFLIKHEYPVIAGKKSLWGITMQGLAMVVKPDDKVFPGYFEPGKLKYRTLEHRLLNHRVRIALEEKGGQGWLNGDRGEFIARYPGVRHRPDGIITLDSGAIVAVETERSMKTRARYINIINSHLAASDAGRWHYTMYVMPDDKTKTSLIRLFDSIKTVMRNNVPVPFDAKNREMLLFRTIDELEETDIRKK
>CP030219.1|AXD70443.1|1036239_1038345_+|sialidase
MKINKLILFGFFITPYSDASTTTGKLPVNDGWHSPQQIFSQHQKTSTNAYRIPAITATTQGTVIAVSDARADGTSDIGLNKDVHFGYRISTDGGNTWSHEQEIIPDIKGKHQISDPAIVHNTDTGSTFLFGFYNDRFITAKPVSNNSDFFMFKSDDGGKTWDKGVSLYNLAPPGYKYILQGPGSGMYYKGTVYIAAQAWHNDKDNINGGTTATSGFIYSTDNGKTWSSAWLRPDSQINGKPGTDGLPDITSESSIFHHDGYIYLSAKPETRREVENRIVYRTNNNGETWERVKEDFLPDNVSRAETSSLSLDDNVYLVGYTTQTKRAGRDGVWITTNTGRRIQVFDAPVNGYTSLAQDANNLYILFEGQGDMYFQRYDISSRDYANLNAVILNRSDDLFYIQDKLRGNTSYIKGSYGKNDSSGAELFYASDRVKFGIFHSKQTNNSKHVYGTVNYSNDDTSFLLSKDHVVFPGDNIFVGYQNSDIDYVNKSHNDVSSWLAGYSLSHDFDWLIYGVKLNGIYSRNDFSRNHYEGLGRTATFDSYSLAIKNELSREFHFMGNVKTNVESGLNTTYFNHSGFTEKGGNGWNNVTLDNSGNWSNQLYANAEISKLFDISHKADLTLTARVMYQYELMNSDSWAENYTVLDSHRVMSPPVKKHSGGLTIGYLNAALNINRQTDIIAGVSLNTDGDNMVGGTIKYTF
>CP030219.1|AXD70442.1|1035063_1036140_+|N-acetylneuraminic-acid-mutarotase
MAASFAAGASVLPPLPVPFKSGTGVIDGKVIYVGLGSAGKTWYKLDTGSPEKKWEPVAEFPGTPREQSTSAVINGNIYVFGGVGKNENGLTQAFNDVYMYNPSENVWRKLMSHSPLGMVGHVTWVHDGKVFTTGGVNQNIFNGYFSDVALADGNKTLLDGINKNYFGKSAGDYLYSNTILTFDPDSSQWHYYGMLPFHGTAGATPVVNGDSIILINGEVKPGLRTDEVIAGQFKNKGLVWKKLSPVSSPDGVAGGFGGMSHGDIIFAGGAYFPGARKNYSQGKFYAHQGLKKTYSDKVYLYKKGTWSDVGTLPEGIAYGVSLPWENGLLMIGGETEGGQATTGSVWLGVNNSHLEIKK
>CP030219.1|AXD70441.1|1034298_1035018_+|N-acetylneuraminic-acid-channel-protein
MNQLKAMASGAVLLLTAVPLTSYALTFDARGGYRSGSHAYETRLKVSNGWENGWWGSLETDSWNGVHNNSNEVIGLSYNELETNYTIKLDDKWSLKPGMLTHWSKAGTRFGPYLKLSYDVNPDLNLGIRYRYDYNVYRSTDLDGNNARANQHRWDGYVTYRINDLFTAAWQTTVYTYQNDFHYNNHKKWATENAFVLLYKMSKNITPYIEYDYLDRQGAYNGRDNIPENSYRVGVSFNL
>CP030219.1|AXD70440.1|1032711_1034169_+|MFS-transporter
MANNEVWYRCLNRTQWRAFFAAWLGYLLDGFDFVLIALVLTEIQGEFGLTTVEAASLISAAFISRWFGGLMLGALGDRYGRRPAMVISIVLFSLGTLACGLAPGYTVMFIARLFIGMGMAGEYGTSATYVIESWPKHLRNKASGFLISGFSVGAVIVAQVYSLVVPLWGWRALFFIGILPIIFALWLRKSIPETEDWKRRKSESIPVLTMVDVLYRGEHRVVNILMTVVAAVALWFCFTGELHNAVIISGLGLICAAIFISFMVQGSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTELGYSPSTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVYSLLASQFLIIPVFAIGGSSIWLLGFLLFFQQILGQGIAGILPKLIGGYFDTEQRAAGLGFTYNVGALGGAAAPVIGALIAEHLDLGTALGSLSFGLTFVVILLIGFDMPSRVQRWLHPDAIRTHDAIDGRPFSGAITRRNGK
>CP030219.1|AXD70439.1|1031700_1032312_-|flavin-reductase-family-protein
MNTQQVNFSSLYFGTPVAIISSQNADGTTNLSPISSWWILGKSIIFGLGKSGKCYENLQQNPDIVLNIPDARLWENVEAMADTTGKEHVPDIKRKMGYRSEKNKFLCSDLTEVNSLDVGPGRIKECPVQIEARVVRGMPLGEYTEEMISMEARIIRTHISEKLLSFNDGKTIFNVEEWKPLYYIFRHYFSSGEHLGKNFRSNK
>CP030219.1|AXD70438.1|1030602_1031559_+|DNA-primase
MTMNLHTRTSISNSAEATSVLPLEHSGSSKTKFCKGNDKKDIYQTVTESIIEALESGVKPWVCPWKRNGTLSGIPSNFATTTAYSGMNIMLLWCSAAKQGFNDSRWLTYKQAQALGAQVRKGVRGTTAIFYKTLEKENEQGEPEQIPMLKTFTVFNVEQIDGLTLNSEEGITQPVPEFDPLPQVEALFQRSGAKITERGQQAFFTPVTDEIYLPERHLFTDAANFYATGLHELTHWSGGKKRLNREMKGKFGSEDYAFEELIAELGSAFLMADLGVSGDVQHESYIASWLKALKNDKRYIFKAASAASKAHRYLMDKH
>CP030219.1|AXD70437.1|1028886_1029882_+|site-specific-integrase
MENYTFDNLLSDYLFYKPLRSATCWSYEKVLKTFRSYVGNDKIPEEITTGDILSWRHSILNERGLSAKTWNNKVAHMRALYAFGINKRYIPLKENPFHEMVVRADTKLKKTLDDQQMEKVYSVMGRFEEMEKQGRAPGRCALLPTHFWLTVLDTLQYTGMRQNQLIHLRQGDISLKGGWIMLQAETAKNHRDYRIPVAGLLKPRLSRLLAEMKLRGMKPTAQLFNVDFCKGNSRIEAMPLQTIRGFFRRLSKECGFKVSPHRFRHTIATKLMRSPNRNLHAAKNLLGHSSANTTLEYVENDVDSLREILDSELPAVKKKGRKKDPSSGSGS
>CP030219.1|AXD70436.1|1027241_1028753_+|hypothetical-protein
MAPVMTRMKTGRRVMLHKLFLWVTDSSAATKKTGKQELAPEARGYLRPQTVDVLLGRENRQKMLKQMRENSLLTKEATEKYYMQPLRHCVSLMQGLPATEREHHAVVGGLVDLTLKTVVCALRLSRGYMLPQGGSAEEQSAQAVAWNAVVFYAALCHSLPVFGQLQGELADGTLWYPGLTVPSRPYRVRFCQDRSNNVHAMATLLSMRLLPDEVVVWLGRTPAALDTLLNQIQGENRPACVVSQIISEAVRFAGGVPQEPQRRTSLDIQFAPGTAVVDVVAGSASGDAGNVLTSLGSALDESPAVDTVVSPTVTPVVAVPDNQEAKAVGDAMALMEFNTSESQVTEAENIPQPGDLVVVKAGEETARISDKKDKQKNCGEQFWRWLSDGIRSGSLSVNAPDSLVHITGGMIFIPTPEIFFAFLKKTPCSSPDINRDDIQREFEKLGRNFCKRDKSLFQCMKYKEERRQGRHKRWSGYLIMARKIYTDRDIPDDSMYLFVSIGG
>CP030219.1|AXD70446.1|1041949_1042255_-|dpoa-decarboxylase
MINENSFIKNIHSKNQDRISVTLVYDTLSKEAHRGCGLHYEIYESCFIGLLRHHLSELNEADANKLRRYAESKGTKIDDESWSEALEAERECRAEIYREQM
>CP030219.1|AXD70447.1|1042288_1042594_-|conjugal-transfer-protein
MKKTVIAATVLCLTAGTPFCSFAADPCEVVLCMYGKATGNSGGSECSSAERAFFKINAFKKHHHFNPGKTFDMRKEFLGECKAADPESISKILSKFGRVKG
>CP030219.1|AXD70448.1|1042629_1043028_-|Cag-pathogenicity-island-protein-Cag12
MIKKLKVIILAAIVTGCSSPPPPVPVEWDKAADPLNTSLPQWSDNNVIVPSPTVNGKWTSSISAQSFYDTIWTPAVFYAVAHSTRIVVTAQSGTDFFIAKNWLRQNGAKGVIEYQPVFNCLTCRETTIYLSR
>CP030219.1|AXD70449.1|1043024_1044050_-|P-type-DNA-transfer-ATPase-VirB11
MTVKNISLDRYKQRFFGDFLELPGLTEIAVNRPGELYTKINGVWVQHAVPLSYEDCYNFARCLAKHHGDNIEDIKPGLSATLESGERCQVIVPPACERDTVSVTIRKPSKIQIPHQSYIDAGFYNRVTGEEKTETHDEELIALYNTKNIPRFMEKCVGYGKTLAVAGETSTGKTTYMKMLIGYIPVHLRISTIEDNPEITFFIHKNYVHLFYPSESSDEKGSVVTPASLLRWNYRMNPDRILLTEVRGAEAWDFLKITGSGHEGSMTSIHAGSAKEAIDGFITRCYENPQCAQLPYTFMLSKVLDSLDVIVSIDLDGNVRRMNDIYFRPIHRNQYFEEMKA
>CP030219.1|AXD70450.1|1044039_1045314_-|type-VI-secretion-protein
MHMNDENKVPVPDEAQASPAHAEDDIATLEREARAKREAELLNAQDDEEKDPVQPAVNKLKKRKRGKATAFLAIVAVALIFLAWGGNWVYRNILWQPTEEKNQDTTPQTNKTDYRQRNDLGMSTDITEEEPEQQDNGQNSAAGTGQAAPAAPPELNKASFLIRRDGSATTQNPIKTRRQEMTLTSATTTGQQDSSAATPPGQPQNTAAPSPGQSPAPVRRIPWNPDLYIPENTSIPCSLDRRFVSDRAGKLRCTITTDIWSASGNTKLIEKGTIASLLYRAIAEEGMKHGQGRAFIIATKLRTRQTPYLDIPLVDTSAAGELGEAGVDGWTDSHFWERFGGALMVGMIPDIGAWASNSAGKKDRNTDYTENSRQAMADMARTTLENSINIPPTLYKNQGEIINLITGEDIDFSNIYTLRLKNDS
>CP030219.1|AXD70451.1|1045354_1046263_-|P-type-conjugative-transfer-protein-VirB9
MMKKLTFSALALMMCGAAWGAAIPQASRYDSRVQQVIYNPQNVTVVNTKPGFMTTLIFDNDEAVISARPGFDEAWEATPDANRVNVRPVALTQGAPGEDGNTTQIVIPPNSRDWHTNMLVVTSKRLYNVELNVIDDKSAQQPAFQVSWRYPGEERDKASREATARQREWEQKQQQASIQKALNQVQTPRNWSYTKYPGKGSFNIVPDFAYDDGRFTFVGFSPSKSIPSVTKELNGKEHVVNSSIQKKGDFTVLVIQEVTPRLVLRSGNAVVGLENSGFGKVHAADGSTVSRQVERVEKPESR
>CP030219.1|AXD70452.1|1046259_1046943_-|type-IV-secretion-system-protein
MSEQKLIAESRTFEQQMIERDKRATKAGFVVGGVGLLIAVLALVAVVVMLPLKQTDVELYTVDNHTGRVEHVTRTSKTSLTATEAYQKAMAANYVKVRERYVWPSLQDDYETVQVYNAPQVNDDYLALYAGKNAPDKVYKNGAHTVKVEILSNQITDGTAPDKVATVRYKKIIRRLADNSTRNEYWDARFTFHSDPDKEMSDAEREINYFGFTVTTWQTDREIRGGE
>CP030219.1|AXD70453.1|1047160_1048237_-|conjugal-transfer-protein-TrbL
MAGIFSSVEKNLIGGITHATNGLMMSYSSMMMGLAAASVTIYIMWRGYQTLAGKLSTPMEDTMWDIMRMAIILSFVANVSGYLNGVTDAINGLKEGFSDGENIWQMLDNLWKSARVLGKTLHDMDNSTYVKDEGWTAQFYVWLGIFILMIITAFVSMIAEVMILLLSITAPVFIFCLMYGFLRPMFNNWLQNIFAAILTILFSALSLRIVINFLTSRMAEATAQADKANIVELGAQVCLAGICAAILVYLSAKLAAALAGASATVSMQGLAAVGIGAAAFGAGKLAGGAVKETRRSAQDNIQGWKDANAGKPGKPGGESGYNASKARKYAIEQMIARNEARRVAQSRESAVKKFNSQV
>CP030219.1|AXD70454.1|1048249_1048474_-|hypothetical-protein
MKKIILFTIISSIVSLAGCKEEAKTTKWYRDHPDELKIVYDKCQKTGSASENCKNANEAHWQIQQLNAPEIDFN
>CP030219.1|AXD70455.1|1048485_1049187_-|type-IV-secretion-system-protein-VirB5
MKTRFRTLILACVIASPLAHAGIPVAVDADPMRDVQWAQELKRWMETARHYQSQIQAYKDQLATATGVRDIADFVDQAKGLKADLEKLRKPGQALNDLLLSGGSSGQFDALYEKYKIFDTCNTAQSGSYANVCKQQVINKAIQLEQTDEVQNQVSQTLGEINSLSNRVALAKDSKESQDLANSIQLKSVMLNTLTTQWEMSVKAAEKRDKVLEAERIKQWNQQQLNAPDINFN

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Crispr_ID: CP030219_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030219_2

1266900-1269124

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

36 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP030219_2

>merge|CP030219|2|1266900-1269124|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGTGGCGGCATAATCACCGCATTGCTGCCCCCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTATACGGACAGAACGACGCAATACCGGTTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGACGAGGAAACCCGCGCGGACTTTGAAAACCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAACTGAGTAAAAAAGAAGTGGCGGTGCTTACGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCTTTTGCCGGACAGTGGATGCGGCGTTGGGGTGTTCCCTGCGCCAGCGGGGATAAACCTAGTACAGAATAAGGATGAATACGCCCAGCGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTCATACCTTTAACAGCACCTTCCGGGCTGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTACAGTTGGAGCTCCACGGACCGCCCACGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTAAAATAGTAAAAATACCATCAAATTATAATGTGTTCCCCGCGCCAGCGGGGATAAACCGTATCAATCGGGTCAACACAGTCACTCATTGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTATTGTCTGTGGCTACGACAGCAAACTTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAGAGTGTCACCAATCCGCCAATAGCAGGAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGATGCGATGGCGTCATAGAACTCCTGAGCTGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATTGTACCACAAATAGGCACCCCGTTATGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTGGGGAAGAATCCGAAAAGGAAATTAAATCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCCACAAATTTTCGGCGTTACCACTGGTTCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATATCTAGCTGTATCTGTTCAGAAACGTTAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTAACCGCATTCATTATGAATGGCTTGCACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACTAGAGTACTGGGTGGAATAATGAAATCACGTGTTCCCCGCGCCAGCGGGGATAAACCGTTAACCGGGCTTTTCTGACTGTCAGTAAACAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGATTTTGTGGATGTGATGGAACTGGTTAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCCCATCACTGTATTGTGTATAGTAGTCCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCAGAATCAAGAGAAACTCGACAAGGCGTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCTAACCCTGCTTGCTCACTTTCTCGCGGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGATATAGAGGAAATCACCACCAGGCTTAATTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTGAGGTACAGACCAAAGCGCCGCTGGACAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGAAAAACCACAGGCCAGCTTAATGCGATGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAATAAGGCCATTTCGACTCTGTGGACGAAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAACATCAGACCTTATCACCTGGTGGCAATCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGAAAAAACCGGGGAAAACGGCAGCCGCGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGTGCATTGATTCTGAAAATATAATCCGTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGATAAAAGGCTCGTTACTCTCGTGGGCATTCCGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGAAAACCAACGCATGAACAGTTTAACGGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAAAATTCCAGTAAAAACAATGGATGCACTAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTGCGCTCGCTGACGTCAACAGCTTCTACGCGTGTTCCCCGCGTCAGCGGGGATAAACCGCTGCCGGTCAGGCTGCTGAAGTTACTGTGGTCGTGTTCCCCGCGTCAGCGGGGATAAGCTA

>CP030219|2|1|1266900-1267721|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGCGGCATAATCACCGCATTGCTGCCCCCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATACGGACAGAACGACGCAATACCGGTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGACGAGGAAACCCGCGCGGACTTTGAAAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACTGAGTAAAAAAGAAGTGGCGGTGCTTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTTTTGCCGGACAGTGGATGCGGCGTTGGG
GTGTTCCCTGCGCCAGCGGGGATAAACCT	AGTACAGAATAAGGATGAATACGCCCAGCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTCATACCTTTAACAGCACCTTCCGGGCTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTACAGTTGGAGCTCCACGGACCGCCCACGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAAAATAGTAAAAATACCATCAAATTATAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATCAATCGGGTCAACACAGTCACTCATTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTATTGTCTGTGGCTACGACAGCAAACTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGAGTGTCACCAATCCGCCAATAGCAGGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGCGATGGCGTCATAGAACTCCTGAGCTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCGGAATTGTACCACAAATAGGCACCCCGTTATGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTGGGGAAGAATCCGAAAAGGAAATTAAATCGTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCACAAATTTTCGGCGTTACCACTGGTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATCTAGCTGTATCTGTTCAGAAACGTTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTAACCGCATTCATTATGAATGGCTTGCACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAGAGTACTGGGTGGAATAATGAAATCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAACCGGGCTTTTCTGACTGTCAGTAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGATTTTGTGGATGTGATGGAACTGGTTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCCATCACTGTATTGTGTATAGTAGTCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAGAATCAAGAGAAACTCGACAAGGCGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCTAACCCTGCTTGCTCACTTTCTCGCGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATAGAGGAAATCACCACCAGGCTTAATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTGAGGTACAGACCAAAGCGCCGCTGGACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAAACCACAGGCCAGCTTAATGCGATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAATAAGGCCATTTCGACTCTGTGGACGAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAACATCAGACCTTATCACCTGGTGGCAATCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGAAAAAACCGGGGAAAACGGCAGCCGCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGTGCATTGATTCTGAAAATATAATCCGTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATAAAAGGCTCGTTACTCTCGTGGGCATTCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGAAAACCAACGCATGAACAGTTTAACGGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAATTCCAGTAAAAACAATGGATGCACTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGCGCTCGCTGACGTCAACAGCTTCTACGC


>CP030219|2|2|1266900-1269124|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGCGGCATAATCACCGCATTGCTGCCCCCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATACGGACAGAACGACGCAATACCGGTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGACGAGGAAACCCGCGCGGACTTTGAAAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACTGAGTAAAAAAGAAGTGGCGGTGCTTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTTTTGCCGGACAGTGGATGCGGCGTTGGG
GTGTTCCCTGCGCCAGCGGGGATAAACCT	AGTACAGAATAAGGATGAATACGCCCAGCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTCATACCTTTAACAGCACCTTCCGGGCTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTACAGTTGGAGCTCCACGGACCGCCCACGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAAAATAGTAAAAATACCATCAAATTATAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATCAATCGGGTCAACACAGTCACTCATTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTATTGTCTGTGGCTACGACAGCAAACTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGAGTGTCACCAATCCGCCAATAGCAGGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGCGATGGCGTCATAGAACTCCTGAGCTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATTGTACCACAAATAGGCACCCCGTTATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGGGAAGAATCCGAAAAGGAAATTAAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCACAAATTTTCGGCGTTACCACTGGTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATCTAGCTGTATCTGTTCAGAAACGTTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTAACCGCATTCATTATGAATGGCTTGCACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAGAGTACTGGGTGGAATAATGAAATCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAACCGGGCTTTTCTGACTGTCAGTAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGATTTTGTGGATGTGATGGAACTGGTTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCCATCACTGTATTGTGTATAGTAGTCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAGAATCAAGAGAAACTCGACAAGGCGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCTAACCCTGCTTGCTCACTTTCTCGCGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATAGAGGAAATCACCACCAGGCTTAATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTGAGGTACAGACCAAAGCGCCGCTGGACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAAACCACAGGCCAGCTTAATGCGATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAATAAGGCCATTTCGACTCTGTGGACGAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAACATCAGACCTTATCACCTGGTGGCAATCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGAAAAAACCGGGGAAAACGGCAGCCGCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGTGCATTGATTCTGAAAATATAATCCGTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATAAAAGGCTCGTTACTCTCGTGGGCATTCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGAAAACCAACGCATGAACAGTTTAACGGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAATTCCAGTAAAAACAATGGATGCACTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGCGCTCGCTGACGTCAACAGCTTCTACGC
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC
GTGTTCCCCGCGTCAGCGGGGATAAGCTA

>CP030219|2|1|1266900-1269124|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGCGGCATAATCACCGCATTGCTGCCCCCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATACGGACAGAACGACGCAATACCGGTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGACGAGGAAACCCGCGCGGACTTTGAAAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACTGAGTAAAAAAGAAGTGGCGGTGCTTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTTTTGCCGGACAGTGGATGCGGCGTTGGG
GTGTTCCCTGCGCCAGCGGGGATAAACCT	AGTACAGAATAAGGATGAATACGCCCAGCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTCATACCTTTAACAGCACCTTCCGGGCTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTACAGTTGGAGCTCCACGGACCGCCCACGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAAAATAGTAAAAATACCATCAAATTATAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATCAATCGGGTCAACACAGTCACTCATTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTATTGTCTGTGGCTACGACAGCAAACTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGAGTGTCACCAATCCGCCAATAGCAGGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGCGATGGCGTCATAGAACTCCTGAGCTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATTGTACCACAAATAGGCACCCCGTTATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGGGAAGAATCCGAAAAGGAAATTAAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCACAAATTTTCGGCGTTACCACTGGTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATCTAGCTGTATCTGTTCAGAAACGTTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTAACCGCATTCATTATGAATGGCTTGCACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAGAGTACTGGGTGGAATAATGAAATCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAACCGGGCTTTTCTGACTGTCAGTAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGATTTTGTGGATGTGATGGAACTGGTTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCCATCACTGTATTGTGTATAGTAGTCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAGAATCAAGAGAAACTCGACAAGGCGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCTAACCCTGCTTGCTCACTTTCTCGCGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATAGAGGAAATCACCACCAGGCTTAATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTGAGGTACAGACCAAAGCGCCGCTGGACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAAACCACAGGCCAGCTTAATGCGATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAATAAGGCCATTTCGACTCTGTGGACGAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAACATCAGACCTTATCACCTGGTGGCAATCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGAAAAAACCGGGGAAAACGGCAGCCGCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGTGCATTGATTCTGAAAATATAATCCGTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATAAAAGGCTCGTTACTCTCGTGGGCATTCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGAAAACCAACGCATGAACAGTTTAACGGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAATTCCAGTAAAAACAATGGATGCACTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGCGCTCGCTGACGTCAACAGCTTCTACGC
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC
GTGTTCCCCGCGTCAGCGGGGATAAGCTA

>CP030219|2|2|1267815-1269063|PILER-CR
	TGGCGGCATAATCACCGCATTGCTGCCCCCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATACGGACAGAACGACGCAATACCGGTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGACGAGGAAACCCGCGCGGACTTTGAAAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACTGAGTAAAAAAGAAGTGGCGGTGCTTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTTTTGCCGGACAGTGGATGCGGCGTTGGG
GTGTTCCCTGCGCCAGCGGGGATAAACCT	AGTACAGAATAAGGATGAATACGCCCAGCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTCATACCTTTAACAGCACCTTCCGGGCTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTACAGTTGGAGCTCCACGGACCGCCCACGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAAAATAGTAAAAATACCATCAAATTATAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATCAATCGGGTCAACACAGTCACTCATTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTATTGTCTGTGGCTACGACAGCAAACTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGAGTGTCACCAATCCGCCAATAGCAGGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGCGATGGCGTCATAGAACTCCTGAGCTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCGGAATTGTACCACAAATAGGCACCCCGTTATGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTGGGGAAGAATCCGAAAAGGAAATTAAATCGTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCACAAATTTTCGGCGTTACCACTGGTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATCTAGCTGTATCTGTTCAGAAACGTTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTAACCGCATTCATTATGAATGGCTTGCACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAGAGTACTGGGTGGAATAATGAAATCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAACCGGGCTTTTCTGACTGTCAGTAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGATTTTGTGGATGTGATGGAACTGGTTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCCATCACTGTATTGTGTATAGTAGTCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAGAATCAAGAGAAACTCGACAAGGCGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCTAACCCTGCTTGCTCACTTTCTCGCGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATAGAGGAAATCACCACCAGGCTTAATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTGAGGTACAGACCAAAGCGCCGCTGGACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAAACCACAGGCCAGCTTAATGCGATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAATAAGGCCATTTCGACTCTGTGGACGAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAACATCAGACCTTATCACCTGGTGGCAATCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGAAAAAACCGGGGAAAACGGCAGCCGCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGTGCATTGATTCTGAAAATATAATCCGTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATAAAAGGCTCGTTACTCTCGTGGGCATTCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGAAAACCAACGCATGAACAGTTTAACGGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAATTCCAGTAAAAACAATGGATGCACTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGCGCTCGCTGACGTCAACAGCTTCTACGC
GTGTTCCCCGCGTCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP030219.1\|AXD70654.1\|1271353_1272793_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
CP030219.1\|AXD70647.1\|1263145_1264204_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP030219.1\|AXD70661.1\|1276495_1277257_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP030219.1\|AXD70658.1\|1274279_1274990_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP030219.1\|AXD70652.1\|1269138_1270185_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP030219.1\|AXD70643.1\|1256974_1257928_-\|type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP030219.1\|AXD70651.1\|1266509_1266803_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP030219.1\|AXD70646.1\|1262595_1263132_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP030219.1\|AXD70648.1\|1264214_1264961_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP030219.1\|AXD70659.1\|1274989_1275469_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP030219.1\|AXD70653.1\|1270435_1271344_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP030219.1\|AXD70650.1\|1265589_1266510_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP030219.1\|AXD70660.1\|1275465_1276515_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP030219.1\|AXD70655.1\|1272779_1273385_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP030219.1\|AXD70657.1\|1273949_1274261_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP030219.1\|AXD70645.1\|1261042_1262599_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP030219.1\|AXD70656.1\|1273402_1273759_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP030219.1\|AXD70642.1\|1256152_1256887_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP030219.1\|AXD70649.1\|1264942_1265593_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP030219.1\|AXD70644.1\|1258367_1261031_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
CP030219.1\|AXD70654.1\|1271353_1272793_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP030219.1\|AXD70647.1\|1263145_1264204_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.98994e-137
CP030219.1\|AXD70661.1\|1276495_1277257_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.3837e-146
CP030219.1\|AXD70658.1\|1274279_1274990_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.15358e-119
CP030219.1\|AXD70652.1\|1269138_1270185_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP030219.1\|AXD70643.1\|1256974_1257928_-\|type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP030219.1\|AXD70651.1\|1266509_1266803_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.76144e-63
CP030219.1\|AXD70646.1\|1262595_1263132_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.13405e-29
CP030219.1\|AXD70648.1\|1264214_1264961_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.81434e-47
CP030219.1\|AXD70659.1\|1274989_1275469_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	7.17105e-104
CP030219.1\|AXD70653.1\|1270435_1271344_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP030219.1\|AXD70650.1\|1265589_1266510_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.30706e-158
CP030219.1\|AXD70660.1\|1275465_1276515_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP030219.1\|AXD70655.1\|1272779_1273385_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	3.23556e-146
CP030219.1\|AXD70657.1\|1273949_1274261_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	9.72909e-65
CP030219.1\|AXD70645.1\|1261042_1262599_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	2.73694e-180
CP030219.1\|AXD70656.1\|1273402_1273759_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.90492e-49
CP030219.1\|AXD70642.1\|1256152_1256887_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.98201e-136
CP030219.1\|AXD70649.1\|1264942_1265593_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.81393e-75
CP030219.1\|AXD70644.1\|1258367_1261031_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0

>CP030219.1|AXD70651.1|1266509_1266803_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEIRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP030219.1|AXD70650.1|1265589_1266510_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSIEQLRGIEGSRVRATYALLAKQYGVKWNGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP030219.1|AXD70649.1|1264942_1265593_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTAQLVPSQLLHLVERGEYVMHQWLWELFPGGKERQFLYRREELQGAFRFFVLSQERPAESAIFDVQCRPFAPELSVGQILRFTLRANPTICKAGKRHDLLMEAKRQVKTQPDSRDIWTYQQQAALEWLSRQGEQNGFSLREASVDAYRQQQIRREKSRQMIQFSSVDYAGVLVVNNPVLFLQRLVQGYGKSRAFGCGMMLIKPGDSE
>CP030219.1|AXD70648.1|1264214_1264961_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLFFQLHGPMASWGVDAPGEVRHSHDLPSRSALLGLLAAALGIRRDEEERLSAFNRHYSFLLCASRNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSTTPDAPYTLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLEGSAADVLREAYRQYQDKFNALKLTLPRLQNECWWEGEHEGLTANKILRRRDMPLSRQQWLFGERSVNQGQWLRKEDACISQE
>CP030219.1|AXD70647.1|1263145_1264204_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTMFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAEKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALRENMNAVYAQETAFKDFNVMNQQGSMKDMLDFICA
>CP030219.1|AXD70646.1|1262595_1263132_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKDDHNATLRQWHEELQEQRGARASLRRSVTVNDVCLSEGFRSLLMQTHTLWKIEGQEWRFTALALTAAVAAHIKSIDERQKFAAQLNNVMSELRFSRLCAVKTPDELLRQLRRAVKLLNGTVNLISLAEDIFHWCQENNELLNHHRRQQRPTEFIRIRWALEYYQAGDDDNEKD
>CP030219.1|AXD70645.1|1261042_1262599_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFNDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKNSARWEDIWLDGLTEQMLREALAPLEHAFQFGAETPSFMQDFEPLTGEKVTVASLLPETPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQAYQSERQTPLWRKLWLNVMPQDAADLPLPATCDASVFPWLTATRTSEQASAVTTPEQVNKLQAYWGMPRRIRLDFTTTQPGACNICGADSDELLSVMTVKNYGVNYDGWRHPLTPYRLPVKEGSGFFSVKPQPGGLIWRDWLGLSQENHTEANKEYPALVVKVFNARRLRDVKAGLWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAAQTAARLLSLLRSALKEAWFASAKDTRGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLTKWQRELWLFTRRYFDDHVFTCPYESSDLKRIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>CP030219.1|AXD70644.1|1258367_1261031_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRQGEPDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGLQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNAFNEPTRHYEKIAHTTLGYELWNSWLSECPELFPPSSLSVRKSQRVMTLWMPVTTGHHGRPPEAIQELDQFRQQDKDAARDFLLSIKALFPLITLPEAWDEDEGIAQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALVKAQTAITLFPPVANVSTFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANSWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEADDVQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRNVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVNIGWLHSEALCLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVAAENLLLFHSRFAFHDRQRIETQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDEREAPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGAIRMPQSARLLIESVYGEDVDMPVGFAKTEQLQEGKFYCDRAFASQMLLNFAPGYCAEISDFLPEKLSTRLAEESVTLWLAKVVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKDEFERLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP030219.1|AXD70643.1|1256974_1257928_-|type-III-secretion-system-effector-SopD
MPVTLNFGNHQNYTLNETRLAHLLSADKEKATHMGNWDKVRDHFRSEKKDHALEVLYAIIHGRGPGEPGEMEVNVEDMSKIYAFKRLQHLACPAHQDLFKIEMDASQTQLLFMVGDTVISQSKIQDILNTSDNVVVESMSREERQLFLQICEVIGATITWHPELLQGSVSTLRKEVTGNAQIKEAVYGMMRPAEAPDHQLVEWQDSLTENEKSMLTCINAGNFEPTTQFCKIGYQEVEGEVAFSMMHPCISYLLHTYTPLVDFKGTNAGFLNELNQDYNGYHKNKMFIDVILERIYLAHEHSLHIGKNECSRNILLT
>CP030219.1|AXD70642.1|1256152_1256887_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNNLPKVDRILALAETNAELETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLINQIRPEIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALQELNAQTWFAGLRREQSGSRAHLSVLAIQRGIFKVLPIIDWDNRTVYQYLQKQGLKYHPLWEQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP030219.1|AXD70652.1|1269138_1270185_-|aminopeptidase
MFSATRRFTVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKPGAENLLKRMSDAEKKNTLLVINFDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAASTNPGLNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRAKNASFPNGNSWHDVRIDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKTEKTS
>CP030219.1|AXD70653.1|1270435_1271344_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP030219.1|AXD70654.1|1271353_1272793_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEVAYAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIETIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVREPVERGVTPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP030219.1|AXD70655.1|1272779_1273385_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHHRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVQERVGHDRFIEIYVDTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPESPQIHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP030219.1|AXD70656.1|1273402_1273759_+|DUF3561-family-protein
MPGMVKVTGFDMRNSHNITFTRSDAFIVDDDTTSSLPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGVLFIWLLG
>CP030219.1|AXD70657.1|1273949_1274261_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTNR
>CP030219.1|AXD70658.1|1274279_1274990_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDYRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKTAIAHTVERADLWHALTPQFFPCELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQETI
>CP030219.1|AXD70659.1|1274989_1275469_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPITICGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKTAK
>CP030219.1|AXD70660.1|1275465_1276515_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLIWLHGKPQSSGLLKANPEDFVVIEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDSGVPNYFGAQRFGIGGSNLQGALRWAQSDAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQREALAFEQDAIAQEMVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP030219.1|AXD70661.1|1276495_1277257_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKCDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP030219_2	2.6\|1267234\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267234-1267265	32	CP030219.1	5405097-5405128	0	1.0

1. spacer 2.6|1267234|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to position: 5405097-5405128, mismatch: 0, identity: 1.0

agtacagaataaggatgaatacgcccagcgcc	CRISPR spacer
agtacagaataaggatgaatacgcccagcgcc	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	NZ_CP026280	Klebsiella oxytoca strain KONIH2 plasmid pKPC-55bf, complete sequence	146878-146912	0	1.0
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	NZ_CP041104	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH07 plasmid unnamed5, complete sequence	34808-34842	0	1.0
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	NZ_CP045219	Pantoea dispersa strain BJQ0007 plasmid unnamed3, complete sequence	15775-15809	0	1.0
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	NZ_CP018922	Serratia marcescens strain UMH7 plasmid unnamed5, complete sequence	4248-4282	0	1.0
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	NZ_CP045693	Klebsiella pneumoniae strain TK421 plasmid pTK421_3, complete sequence	3800-3834	0	1.0
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	CP052480	Klebsiella pneumoniae strain C16KP0050 plasmid pC16KP0050-4, complete sequence	3654-3688	0	1.0
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	NC_005814	Yersinia pestis biovar Microtus str. 91001 plasmid pCRY, complete sequence	14694-14728	0	1.0
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	NZ_CP026206	Escherichia coli strain ECONIH5 plasmid pECO-cbb3, complete sequence	37146-37180	0	1.0
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	NZ_CP022119	Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed2, complete sequence	12565-12599	0	1.0
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	NZ_CP022119	Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed2, complete sequence	18373-18407	0	1.0
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	NZ_CP026384	Serratia sp. SSNIH1 plasmid pSER-840e, complete sequence	32128-32162	0	1.0
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	NZ_CP035200	Klebsiella pneumoniae strain LH375 plasmid pLH375-3, complete sequence	23488-23522	0	1.0
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	NC_010726	Klebsiella pneumoniae plasmid pMET-1, complete sequence	14665-14699	0	1.0
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	265042-265076	0	1.0
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	NZ_CP045060	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence	14922-14956	0	1.0
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	NZ_CP045053	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence	14925-14959	0	1.0
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	NZ_CP045057	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence	14924-14958	0	1.0
CP030219_2	2.11\|1267539\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267539-1267570	32	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	130923-130954	0	1.0
CP030219_2	2.12\|1267600\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267600-1267631	32	NZ_KY515226	Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence	88673-88704	0	1.0
CP030219_2	2.12\|1267600\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267600-1267631	32	NZ_KP763470	Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence	18861-18892	0	1.0
CP030219_2	2.26\|1268454\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268454-1268485	32	NZ_KY515226	Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence	103944-103975	0	1.0
CP030219_2	2.27\|1268515\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268515-1268546	32	NC_010392	Phage Gifsy-1, complete genome	16713-16744	0	1.0
CP030219_2	2.31\|1268759\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268759-1268790	32	NZ_KY515226	Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence	105605-105636	0	1.0
CP030219_2	2.31\|1268759\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268759-1268790	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	6883-6914	0	1.0
CP030219_2	2.31\|1268759\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268759-1268790	32	CP053410	Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence	93249-93280	0	1.0
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	NC_004313	Salmonella phage ST64B, complete genome	29636-29667	0	1.0
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	KU927493	Salmonella phage 118970_sal3, complete genome	27659-27690	0	1.0
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	KU927493	Salmonella phage 118970_sal3, complete genome	67247-67278	0	1.0
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	AY055382	Salmonella typhimurium phage ST64B complete sequence	29636-29667	0	1.0
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	35964-35995	0	1.0
CP030219_2	2.35\|1269003\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1269003-1269034	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	179828-179859	0	1.0
CP030219_2	2.35\|1269003\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1269003-1269034	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	65262-65293	0	1.0
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	NZ_CP048112	Klebsiella michiganensis strain BD177 plasmid unnamed6	9936-9970	1	0.971
CP030219_1	1.1\|1041817\|35\|CP030219\|CRISPRCasFinder	1041817-1041851	35	NZ_CP019191	Salmonella enterica subsp. enterica serovar Poona str. ATCC BAA-1673 plasmid pATCCBAA1673_02, complete sequence	28125-28159	1	0.971
CP030219_2	2.12\|1267600\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267600-1267631	32	NZ_CP014707	Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence	54775-54806	1	0.969
CP030219_2	2.12\|1267600\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267600-1267631	32	CP053410	Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence	75625-75656	1	0.969
CP030219_2	2.26\|1268454\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268454-1268485	32	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	63636-63667	1	0.969
CP030219_2	2.26\|1268454\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268454-1268485	32	NC_010391	Salmonella phage Fels-1, complete genome	37655-37686	1	0.969
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	10021-10052	1	0.969
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	39118-39149	1	0.969
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	113993-114024	1	0.969
CP030219_2	2.7\|1267295\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267295-1267326	32	NZ_CP042502	Enterobacter sp. E76 plasmid pE76_003, complete sequence	30419-30450	2	0.938
CP030219_2	2.26\|1268454\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268454-1268485	32	NZ_KP763470	Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence	3578-3609	2	0.938
CP030219_2	2.26\|1268454\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268454-1268485	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	8562-8593	2	0.938
CP030219_2	2.26\|1268454\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268454-1268485	32	CP053410	Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence	90909-90940	2	0.938
CP030219_2	2.26\|1268454\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268454-1268485	32	NC_010393	Phage Gifsy-2, complete genome	39454-39485	2	0.938
CP030219_2	2.26\|1268454\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268454-1268485	32	NC_010392	Phage Gifsy-1, complete genome	7352-7383	2	0.938
CP030219_2	2.31\|1268759\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268759-1268790	32	NZ_KP763470	Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence	1208-1239	2	0.938
CP030219_2	2.31\|1268759\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268759-1268790	32	NZ_KP763470	Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence	106442-106473	2	0.938
CP030219_2	2.29\|1268637\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268637-1268668	32	NZ_CP042502	Enterobacter sp. E76 plasmid pE76_003, complete sequence	74825-74856	3	0.906
CP030219_2	2.35\|1269003\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1269003-1269034	32	AGRM01000007	Salmonella enterica subsp. houtenae str. ATCC BAA-1581 plasmid pSEHO0A2, complete sequence, whole genome shotgun sequence	8907-8938	4	0.875
CP030219_2	2.35\|1269003\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1269003-1269034	32	NZ_CP029990	Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence	7530-7561	4	0.875
CP030219_2	2.35\|1269003\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1269003-1269034	32	NZ_CP030197	Salmonella enterica strain SA20051401 plasmid pSA20051401.1, complete sequence	87602-87633	4	0.875
CP030219_2	2.35\|1269003\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1269003-1269034	32	NZ_CP030218	Salmonella enterica strain SA20075157 plasmid pSA20075157.1, complete sequence	20285-20316	4	0.875
CP030219_2	2.35\|1269003\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1269003-1269034	32	NZ_CP030177	Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 plasmid pIncFII.2, complete sequence	72336-72367	4	0.875
CP030219_2	2.35\|1269003\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1269003-1269034	32	NZ_CP025255	Salmonella enterica subsp. enterica serovar Newport str. CDC 2010K-2159 plasmid pSNE1-2010K-2159, complete sequence	54912-54943	4	0.875
CP030219_2	2.35\|1269003\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1269003-1269034	32	CP053415	Salmonella enterica strain 2011K-0868 plasmid unnamed, complete sequence	90385-90416	4	0.875
CP030219_2	2.35\|1269003\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1269003-1269034	32	CP053327	Salmonella enterica subsp. salamae serovar 58:c:z6 strain 2013K-0366 plasmid unnamed, complete sequence	98707-98738	4	0.875
CP030219_2	2.35\|1269003\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1269003-1269034	32	NZ_CP030289	Salmonella enterica subsp. enterica serovar Gaminara str. SA20063285 plasmid pIncI1.1, complete sequence	61911-61942	4	0.875
CP030219_2	2.35\|1269003\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1269003-1269034	32	NZ_CP033339	Salmonella enterica subsp. enterica serovar Anatum strain CFSAN076215 plasmid pCFSAN076215, complete sequence	84558-84589	4	0.875
CP030219_2	2.35\|1269003\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1269003-1269034	32	NZ_CP024167	Salmonella enterica subsp. enterica serovar Gaminara strain CFSAN070644 plasmid pCFSAN024441_02, complete sequence	31273-31304	4	0.875
CP030219_2	2.35\|1269003\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1269003-1269034	32	NZ_CP022118	Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed1, complete sequence	35777-35808	4	0.875
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	NZ_CP019281	Escherichia coli strain 13P484A plasmid p13P484A-1, complete sequence	29062-29093	5	0.844
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	AP012536	Stx2-converting phage Stx2a_1447 proviral DNA, complete genome	7521-7552	5	0.844
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	JQ182728	Enterobacteria phage mEp460, complete genome	33083-33114	5	0.844
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	KF030445	Escherichia phage 1720a-02, complete genome	38406-38437	5	0.844
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	MF807953	Escherichia phage Ayreon, complete genome	34508-34539	5	0.844
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	NC_003444	Enterobacteria phage SfV, complete genome	27229-27260	5	0.844
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	NC_049941	Stx2-converting phage Stx2a_WGPS2 proviral DNA, complete genome	7521-7552	5	0.844
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	U82619	Shigella flexneri bacteriophage V, complete genome	27229-27260	5	0.844
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	NC_009514	Phage cdtI DNA, complete genome	36103-36134	5	0.844
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	LR595862	Escherichia virus Lambda_2H10 genome assembly, chromosome: 1	34769-34800	5	0.844
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	MT225100	Escherichia phage Lys8385Vzw, complete genome	34228-34259	5	0.844
CP030219_2	2.2\|1266990\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1266990-1267021	32	JX866719	Klebsiella phage JD001, complete genome	41750-41781	6	0.812
CP030219_2	2.2\|1266990\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1266990-1267021	32	MT894004	Klebsiella phage MEW1, complete genome	20612-20643	6	0.812
CP030219_2	2.2\|1266990\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1266990-1267021	32	NC_041900	Klebsiella phage vB_KpnM_KpV52, complete genome	30429-30460	6	0.812
CP030219_2	2.2\|1266990\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1266990-1267021	32	MG432137	Pectobacterium phage PEAT2, complete genome	2366-2397	6	0.812
CP030219_2	2.2\|1266990\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1266990-1267021	32	MG197810	Klebsiella phage 1611E-K2-1, complete genome	40330-40361	7	0.781
CP030219_2	2.12\|1267600\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267600-1267631	32	NZ_KX426231	Acinetobacter lwoffii strain EK30A plasmid pALWEK1.5, complete sequence	4174-4205	7	0.781
CP030219_2	2.22\|1268210\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268210-1268241	32	CP001774	Spirosoma linguale DSM 74 plasmid pSLIN05, complete sequence	1424-1455	7	0.781
CP030219_2	2.26\|1268454\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268454-1268485	32	NZ_CP014707	Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence	39493-39524	7	0.781
CP030219_2	2.26\|1268454\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268454-1268485	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	66451-66482	7	0.781
CP030219_2	2.26\|1268454\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268454-1268485	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	86708-86739	7	0.781
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	104841-104872	7	0.781
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	NC_021857	Shigella phage SfII, complete genome	30280-30311	7	0.781
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	KC814930	Shigella phage SfIV, complete genome	30081-30112	7	0.781
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	LR595868	Escherichia virus mEp460_4F5 genome assembly, chromosome: 1	32174-32205	7	0.781
CP030219_2	2.36\|1269064\|32\|CP030219\|CRISPRCasFinder,CRT	1269064-1269095	32	MH588547	Caulobacter phage CcrSC, complete genome	101522-101553	7	0.781
CP030219_2	2.36\|1269064\|32\|CP030219\|CRISPRCasFinder,CRT	1269064-1269095	32	NC_048047	Caulobacter phage CcrBL9, complete genome	102162-102193	7	0.781
CP030219_2	2.4\|1267112\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267112-1267143	32	NZ_CP030935	Enterococcus gilvus strain CR1 plasmid pCR1C, complete sequence	3850-3881	8	0.75
CP030219_2	2.4\|1267112\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267112-1267143	32	AP014022	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C112A-MedDCM-OCT-S32-C75, * SEQUENCING IN PROGRESS *	10084-10115	8	0.75
CP030219_2	2.4\|1267112\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267112-1267143	32	AP014023	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C112A-MedDCM-OCT-S35-C64, * SEQUENCING IN PROGRESS *	10403-10434	8	0.75
CP030219_2	2.6\|1267234\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267234-1267265	32	MG945570	UNVERIFIED: Microviridae sp. isolate 3500-1801, complete genome	1494-1525	8	0.75
CP030219_2	2.12\|1267600\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267600-1267631	32	MG945714	UNVERIFIED: Microviridae sp. isolate 1977-1801, complete genome	3916-3947	8	0.75
CP030219_2	2.15\|1267783\|32\|CP030219\|CRISPRCasFinder,CRT	1267783-1267814	32	NZ_CP045276	Bacillus megaterium strain FDU301 plasmid pFDU301D, complete sequence	66178-66209	8	0.75
CP030219_2	2.16\|1267844\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1267844-1267875	32	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	475691-475722	8	0.75
CP030219_2	2.19\|1268027\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268027-1268058	32	NZ_CP025614	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed2, complete sequence	174153-174184	8	0.75
CP030219_2	2.26\|1268454\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268454-1268485	32	NZ_CP022994	Paraburkholderia aromaticivorans strain BN5 plasmid pBN4, complete sequence	27696-27727	8	0.75
CP030219_2	2.26\|1268454\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268454-1268485	32	NZ_CP026110	Paraburkholderia hospita strain DSM 17164 plasmid pEMT1, complete sequence	82705-82736	8	0.75
CP030219_2	2.29\|1268637\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268637-1268668	32	MN582070	Myoviridae sp. ctThM1, complete genome	64442-64473	8	0.75
CP030219_2	2.31\|1268759\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268759-1268790	32	MN812206	Flavobacterium phage vB_FspS_filifjonk9-1, complete genome	2885-2916	8	0.75
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	JQ182729	Enterobacterial phage mEp390, complete genome	29954-29985	8	0.75
CP030219_2	2.3\|1267051\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267051-1267082	32	NZ_CP028352	Pantoea vagans strain PV989 plasmid pPV989-94, complete sequence	62516-62547	9	0.719
CP030219_2	2.4\|1267112\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267112-1267143	32	NC_002094	Marinococcus halophilus plasmid pPL1, complete sequence	2674-2705	9	0.719
CP030219_2	2.9\|1267417\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267417-1267448	32	NZ_MF547664	Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence	24198-24229	9	0.719
CP030219_2	2.12\|1267600\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267600-1267631	32	MK937603	Gordonia phage Bakery, complete genome	21348-21379	9	0.719
CP030219_2	2.13\|1267661\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267661-1267692	32	MN693015	Marine virus AFVG_117M67, complete genome	14533-14564	9	0.719
CP030219_2	2.13\|1267661\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267661-1267692	32	MN694442	Marine virus AFVG_250M595, complete genome	14537-14568	9	0.719
CP030219_2	2.21\|1268149\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268149-1268180	32	MN484601	Gordonia phage Sixama, complete genome	110835-110866	9	0.719
CP030219_2	2.21\|1268149\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268149-1268180	32	MG676225	Aeromonas phage AhSzw-1, complete genome	98992-99023	9	0.719
CP030219_2	2.24\|1268332\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268332-1268363	32	NZ_CP012899	Burkholderia sp. CCGE1001 plasmid pCCGE1001a, complete sequence	157687-157718	9	0.719
CP030219_2	2.24\|1268332\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268332-1268363	32	NZ_CP021026	Rhizobium sp. TAL182 plasmid pRetTAL182b, complete sequence	6131-6162	9	0.719
CP030219_2	2.24\|1268332\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268332-1268363	32	NZ_CP013513	Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence	6046-6077	9	0.719
CP030219_2	2.24\|1268332\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268332-1268363	32	NZ_CP013603	Rhizobium sp. N731 plasmid pRspN731b, complete sequence	6046-6077	9	0.719
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	NZ_CP030842	Acidisarcina polymorpha strain SBC82 plasmid pACPOL2, complete sequence	1940-1971	9	0.719
CP030219_2	2.33\|1268881\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268881-1268912	32	KM389288	UNVERIFIED: Escherichia phage Phi06_2987 S clone contig00002 genomic sequence	11217-11248	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_KR270450	Staphylococcus aureus strain SM31 plasmid pSM31, complete sequence	26258-26289	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP018769	Staphylococcus aureus subsp. aureus strain UCI 28 plasmid pUCI28, complete sequence	25211-25242	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP007658	Staphylococcus aureus strain V2200 plasmid pV2200, complete sequence	6638-6669	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_LT671860	Staphylococcus aureus subsp. aureus isolate Clinical isolate plasmid II	25015-25046	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP022911	Staphylococcus aureus strain 164 plasmid pPS00089.1A.1, complete sequence	16453-16484	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP029475	Staphylococcus aureus strain USA 100 isolate 30-47 plasmid unnamed, complete sequence	1139-1170	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	CP030682	Staphylococcus aureus strain ER05857.3 plasmid unnamed1, complete sequence	9224-9255	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_KF831356	Staphylococcus aureus strain A960649 plasmid pBU108b, complete sequence	20415-20446	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	CP030687	Staphylococcus aureus strain ER02919.3 plasmid unnamed1, complete sequence	24378-24409	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP029659	Staphylococcus aureus strain AR_0467 plasmid unnamed1, complete sequence	5230-5261	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NC_018972	Staphylococcus aureus plasmid pWBG744, complete sequence	982-1013	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NC_019007	Staphylococcus aureus plasmid SAP048A, complete sequence	15240-15271	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NC_019008	Staphylococcus aureus plasmid SAP074A, complete sequence	1365-1396	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NC_019010	Staphylococcus aureus plasmid pSK67, complete sequence	24211-24242	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP029679	Staphylococcus aureus strain AR_0215 plasmid unnamed1, complete sequence	21125-21156	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	LC377536	Staphylococcus aureus plasmid pNTUH_9448 NTUH_9448 DNA, complete sequence	1075-1106	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NC_018976	Staphylococcus aureus plasmid p19321-P03, complete sequence	25003-25034	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP007677	Staphylococcus aureus strain HUV05 plasmid pHUV05-01, complete sequence	16371-16402	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP007678	Staphylococcus aureus strain HUV05 plasmid pHUV05-02, complete sequence	15753-15784	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_LR130512	Staphylococcus aureus strain BPH2819 isolate BPH2819 plasmid 2	24782-24813	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP029085	Staphylococcus aureus strain AR462 plasmid unnamed1, complete sequence	23304-23335	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP029081	Staphylococcus aureus strain AR465 plasmid unnamed1, complete sequence	14783-14814	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP017683	Staphylococcus aureus strain CFSAN007850 plasmid pCFSAN007850, complete sequence	22131-22162	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NC_013318	Staphylococcus aureus plasmid SAP012A, complete sequence	600-631	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NC_013335	Staphylococcus aureus plasmid SAP060A, complete sequence	14253-14284	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP053641	Staphylococcus aureus strain 14505 plasmid unnamed, complete sequence	24846-24877	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	CP030472	Staphylococcus aureus strain ER01121.3 plasmid unnamed1, complete sequence	23430-23461	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP047855	Staphylococcus aureus strain UP_1525 plasmid unnamed, complete sequence	24737-24768	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP047860	Staphylococcus aureus strain UP_1405 plasmid unnamed, complete sequence	24846-24877	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP047864	Staphylococcus aureus strain UP_1106 plasmid unnamed, complete sequence	24846-24877	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP047862	Staphylococcus aureus strain UP_1322 plasmid unnamed, complete sequence	24845-24876	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP007455	Staphylococcus aureus strain 502A isolate RN6607 plasmid unnamed, complete sequence	5750-5781	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	CP030500	Staphylococcus aureus strain ER02612.3 plasmid unnamed1, complete sequence	8136-8167	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	CP030711	Staphylococcus aureus strain ER01174.3 plasmid unnamed2, complete sequence	13043-13074	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	CP030691	Staphylococcus aureus strain ER01422.3 plasmid unnamed1, complete sequence	6107-6138	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP047866	Staphylococcus aureus strain UP_844 plasmid unnamed, complete sequence	24844-24875	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP047821	Staphylococcus aureus strain UP_1395 plasmid unnamed, complete sequence	25016-25047	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP047818	Staphylococcus aureus strain UP_1433 plasmid unnamed1, complete sequence	24843-24874	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP010891	Staphylococcus aureus strain SA564 plasmid pSA564, complete sequence	18370-18401	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	CP030627	Staphylococcus aureus strain ER01823.3 plasmid unnamed1, complete sequence	17872-17903	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP035792	Staphylococcus aureus strain 592 plasmid unnamed, complete sequence	24845-24876	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	CP030543	Staphylococcus aureus strain ER04166.3 plasmid unnamed1, complete sequence	24377-24408	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP045867	Staphylococcus aureus strain CFSAN007894 plasmid pCFSAN007894, complete sequence	16012-16043	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	MK992500	Staphylococcus aureus strain 5Sau489 plasmid p5Sau489, complete sequence	41101-41132	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	CP030594	Staphylococcus aureus strain ER03588.3 plasmid unnamed1, complete sequence	9228-9259	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	MK992499	Staphylococcus aureus strain 17Sau58 plasmid p17Sau58, complete sequence	35882-35913	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	CP030423	Staphylococcus aureus strain ER02972.3 plasmid unnamed1, complete sequence	21307-21338	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP029654	Staphylococcus aureus strain AR_0469 plasmid unnamed1, complete sequence	14805-14836	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP039163	Staphylococcus aureus strain Lr12 plasmid pLr12, complete sequence	3955-3986	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	CP030504	Staphylococcus aureus strain ER04402.3 plasmid unnamed1, complete sequence	24377-24408	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	CP030546	Staphylococcus aureus strain ER04181.3 plasmid unnamed1, complete sequence	13043-13074	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP047858	Staphylococcus aureus strain UP_1435 plasmid unnamed2, complete sequence	24846-24877	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP040561	Staphylococcus aureus strain Col52-A5 plasmid pCOL52-A5, complete sequence	35163-35194	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	CP030440	Staphylococcus aureus strain ER02746.3 plasmid unnamed1, complete sequence	5569-5600	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	CP030450	Staphylococcus aureus strain ER04225.3 plasmid unnamed1, complete sequence	5335-5366	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	CP030392	Staphylococcus aureus strain ER04142.3 plasmid unnamed1, complete sequence	24377-24408	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	CP030389	Staphylococcus aureus strain ER01689.3 plasmid unnamed1, complete sequence	22263-22294	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP029672	Staphylococcus aureus strain AR_0220 plasmid unnamed1, complete sequence	8212-8243	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP029662	Staphylococcus aureus strain AR_0228 plasmid unnamed2, complete sequence	18377-18408	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	CP030589	Staphylococcus aureus strain ER04314.3 plasmid unnamed1, complete sequence	9225-9256	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP029670	Staphylococcus aureus strain AR_0222 plasmid unnamed1, complete sequence	24157-24188	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NC_017344	Staphylococcus aureus subsp. aureus ECT-R 2 plasmid pLUH02, complete sequence	7318-7349	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP029656	Staphylococcus aureus strain AR_0468 plasmid unnamed1, complete sequence	21890-21921	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_CP053355	Staphylococcus aureus strain 14507 plasmid unnamed, complete sequence	18457-18488	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_MH785232	Staphylococcus aureus strain ch5 plasmid pLUH02, complete sequence	7309-7340	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_MH785250	Staphylococcus aureus strain ch3 plasmid pLUH02, complete sequence	7319-7350	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	NZ_MF622050	Staphylococcus aureus strain ST6 plasmid pSA564-fus, complete sequence	9991-10022	9	0.719
CP030219_2	2.34\|1268942\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268942-1268973	32	CP030551	Staphylococcus aureus strain ER03481.3 plasmid unnamed1, complete sequence	24382-24413	9	0.719
CP030219_2	2.36\|1269064\|32\|CP030219\|CRISPRCasFinder,CRT	1269064-1269095	32	NZ_CP049252	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed5, complete sequence	5757-5788	9	0.719
CP030219_2	2.36\|1269064\|32\|CP030219\|CRISPRCasFinder,CRT	1269064-1269095	32	HQ110084	Erwinia phage ENT90, complete genome	27362-27393	9	0.719
CP030219_2	2.7\|1267295\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267295-1267326	32	GU942563	Vibrio phage CTX chromosome I prophage, complete sequence	8263-8294	10	0.688
CP030219_2	2.7\|1267295\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267295-1267326	32	GU942563	Vibrio phage CTX chromosome I prophage, complete sequence	13728-13759	10	0.688
CP030219_2	2.7\|1267295\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267295-1267326	32	AF414369	Vibrio phage CTX RstA2 (rstA2) gene, partial cds; and RstB2 (rstB2), Cep (cep), OrfU (orfU), Ace (ace), Zot (zot), CtxA (ctxA), and CtxB (ctxB) genes, complete cds	633-664	10	0.688
CP030219_2	2.7\|1267295\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267295-1267326	32	AF414368	Vibrio phage CTX RstA2 (rstA2) gene, partial cds; RstB2 (rstB2), Cep (cep), OrfU (orfU), and Ace (ace) genes, complete cds; and Zot (zot) gene, partial cds	628-659	10	0.688
CP030219_2	2.12\|1267600\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267600-1267631	32	MN735434	Mycobacterium phage Mangeria, complete genome	1955-1986	10	0.688
CP030219_2	2.12\|1267600\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267600-1267631	32	MT771340	Mycobacterium phage Jorgensen, complete genome	40864-40895	10	0.688
CP030219_2	2.12\|1267600\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267600-1267631	32	MK016502	Mycobacterium phage Pat3, complete genome	34091-34122	10	0.688
CP030219_2	2.12\|1267600\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267600-1267631	32	MK016491	Mycobacterium phage BaboJay, complete genome	35227-35258	10	0.688
CP030219_2	2.12\|1267600\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267600-1267631	32	MK801726	Mycobacterium phage ChotaBhai, complete genome	34890-34921	10	0.688
CP030219_2	2.12\|1267600\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267600-1267631	32	MH727548	Mycobacterium phage Galactic, complete genome	41092-41123	10	0.688
CP030219_2	2.12\|1267600\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267600-1267631	32	MH399774	Mycobacterium phage DoctorDiddles, complete genome	34926-34957	10	0.688
CP030219_2	2.12\|1267600\|32\|CP030219\|PILER-CR,CRISPRCasFinder,CRT	1267600-1267631	32	JF937098	Mycobacterium virus Ibhubesi, complete genome	41216-41247	10	0.688
CP030219_2	2.15\|1267783\|32\|CP030219\|CRISPRCasFinder,CRT	1267783-1267814	32	CP046513	Bacillus cereus strain JHU plasmid p2, complete sequence	163755-163786	10	0.688
CP030219_2	2.32\|1268820\|32\|CP030219\|CRISPRCasFinder,CRT,PILER-CR	1268820-1268851	32	NZ_CP021119	Streptomyces sp. CLI2509 strain CLI2905 plasmid unnamed1, complete sequence	36118-36149	11	0.656

1. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to NZ_CP026280 (Klebsiella oxytoca strain KONIH2 plasmid pKPC-55bf, complete sequence) position: , mismatch: 0, identity: 1.0

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtaccacttcattatttttcgtc	Protospacer
***********************************

2. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to NZ_CP041104 (Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH07 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtaccacttcattatttttcgtc	Protospacer
***********************************

3. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to NZ_CP045219 (Pantoea dispersa strain BJQ0007 plasmid unnamed3, complete sequence) position: , mismatch: 0, identity: 1.0

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtaccacttcattatttttcgtc	Protospacer
***********************************

4. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to NZ_CP018922 (Serratia marcescens strain UMH7 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtaccacttcattatttttcgtc	Protospacer
***********************************

5. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to NZ_CP045693 (Klebsiella pneumoniae strain TK421 plasmid pTK421_3, complete sequence) position: , mismatch: 0, identity: 1.0

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtaccacttcattatttttcgtc	Protospacer
***********************************

6. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to CP052480 (Klebsiella pneumoniae strain C16KP0050 plasmid pC16KP0050-4, complete sequence) position: , mismatch: 0, identity: 1.0

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtaccacttcattatttttcgtc	Protospacer
***********************************

7. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to NC_005814 (Yersinia pestis biovar Microtus str. 91001 plasmid pCRY, complete sequence) position: , mismatch: 0, identity: 1.0

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtaccacttcattatttttcgtc	Protospacer
***********************************

8. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to NZ_CP026206 (Escherichia coli strain ECONIH5 plasmid pECO-cbb3, complete sequence) position: , mismatch: 0, identity: 1.0

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtaccacttcattatttttcgtc	Protospacer
***********************************

9. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to NZ_CP022119 (Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtaccacttcattatttttcgtc	Protospacer
***********************************

10. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to NZ_CP022119 (Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtaccacttcattatttttcgtc	Protospacer
***********************************

11. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to NZ_CP026384 (Serratia sp. SSNIH1 plasmid pSER-840e, complete sequence) position: , mismatch: 0, identity: 1.0

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtaccacttcattatttttcgtc	Protospacer
***********************************

12. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to NZ_CP035200 (Klebsiella pneumoniae strain LH375 plasmid pLH375-3, complete sequence) position: , mismatch: 0, identity: 1.0

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtaccacttcattatttttcgtc	Protospacer
***********************************

13. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to NC_010726 (Klebsiella pneumoniae plasmid pMET-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtaccacttcattatttttcgtc	Protospacer
***********************************

14. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtaccacttcattatttttcgtc	Protospacer
***********************************

15. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 0, identity: 1.0

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtaccacttcattatttttcgtc	Protospacer
***********************************

16. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 0, identity: 1.0

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtaccacttcattatttttcgtc	Protospacer
***********************************

17. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 0, identity: 1.0

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtaccacttcattatttttcgtc	Protospacer
***********************************

18. spacer 2.11|1267539|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gttattgtctgtggctacgacagcaaacttta	CRISPR spacer
gttattgtctgtggctacgacagcaaacttta	Protospacer
********************************

19. spacer 2.12|1267600|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY515226 (Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence) position: , mismatch: 0, identity: 1.0

aagagtgtcaccaatccgccaatagcaggagt	CRISPR spacer
aagagtgtcaccaatccgccaatagcaggagt	Protospacer
********************************

20. spacer 2.12|1267600|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP763470 (Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence) position: , mismatch: 0, identity: 1.0

aagagtgtcaccaatccgccaatagcaggagt	CRISPR spacer
aagagtgtcaccaatccgccaatagcaggagt	Protospacer
********************************

21. spacer 2.26|1268454|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY515226 (Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtgaggtacagaccaaagcgccgctggacag	CRISPR spacer
ggtgaggtacagaccaaagcgccgctggacag	Protospacer
********************************

22. spacer 2.27|1268515|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NC_010392 (Phage Gifsy-1, complete genome) position: , mismatch: 0, identity: 1.0

ccggaaaaaccacaggccagcttaatgcgatg	CRISPR spacer
ccggaaaaaccacaggccagcttaatgcgatg	Protospacer
********************************

23. spacer 2.31|1268759|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY515226 (Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtgcattgattctgaaaatataatccgttc	CRISPR spacer
ttgtgcattgattctgaaaatataatccgttc	Protospacer
********************************

24. spacer 2.31|1268759|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 0, identity: 1.0

ttgtgcattgattctgaaaatataatccgttc	CRISPR spacer
ttgtgcattgattctgaaaatataatccgttc	Protospacer
********************************

25. spacer 2.31|1268759|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP053410 (Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtgcattgattctgaaaatataatccgttc	CRISPR spacer
ttgtgcattgattctgaaaatataatccgttc	Protospacer
********************************

26. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 0, identity: 1.0

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
gagaaaaccaacgcatgaacagtttaacggta	Protospacer
********************************

27. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 0, identity: 1.0

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
gagaaaaccaacgcatgaacagtttaacggta	Protospacer
********************************

28. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 0, identity: 1.0

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
gagaaaaccaacgcatgaacagtttaacggta	Protospacer
********************************

29. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 0, identity: 1.0

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
gagaaaaccaacgcatgaacagtttaacggta	Protospacer
********************************

30. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 0, identity: 1.0

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaattccagtaaaaacaatggatgcacta	Protospacer
********************************

31. spacer 2.35|1269003|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 0, identity: 1.0

tttgcgctcgctgacgtcaacagcttctacgc	CRISPR spacer
tttgcgctcgctgacgtcaacagcttctacgc	Protospacer
********************************

32. spacer 2.35|1269003|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 0, identity: 1.0

tttgcgctcgctgacgtcaacagcttctacgc	CRISPR spacer
tttgcgctcgctgacgtcaacagcttctacgc	Protospacer
********************************

33. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to NZ_CP048112 (Klebsiella michiganensis strain BD177 plasmid unnamed6) position: , mismatch: 1, identity: 0.971

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtaccactttattatttttcgtc	Protospacer
*********************.*************

34. spacer 1.1|1041817|35|CP030219|CRISPRCasFinder matches to NZ_CP019191 (Salmonella enterica subsp. enterica serovar Poona str. ATCC BAA-1673 plasmid pATCCBAA1673_02, complete sequence) position: , mismatch: 1, identity: 0.971

ttttctttccgcgtaccacttcattatttttcgtc	CRISPR spacer
ttttctttccgcgtgccacttcattatttttcgtc	Protospacer
**************.********************

35. spacer 2.12|1267600|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014707 (Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence) position: , mismatch: 1, identity: 0.969

aagagtgtcaccaatccgccaatagcaggagt	CRISPR spacer
aagagtgtcaccaatccaccaatagcaggagt	Protospacer
*****************.**************

36. spacer 2.12|1267600|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to CP053410 (Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.969

aagagtgtcaccaatccgccaatagcaggagt	CRISPR spacer
aagagtgtcaccaatccaccaatagcaggagt	Protospacer
*****************.**************

37. spacer 2.26|1268454|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.969

ggtgaggtacagaccaaagcgccgctggacag	CRISPR spacer
ggtgaggtacagaccaaagccccgctggacag	Protospacer
******************** ***********

38. spacer 2.26|1268454|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NC_010391 (Salmonella phage Fels-1, complete genome) position: , mismatch: 1, identity: 0.969

ggtgaggtacagaccaaagcgccgctggacag	CRISPR spacer
ggtgaggtacagaccaaagccccgctggacag	Protospacer
******************** ***********

39. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaattccagtaaaaacaatggatgcgcta	Protospacer
****************************.***

40. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaattccagtaaaaacaatggatgcgcta	Protospacer
****************************.***

41. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaattccagtaaaaacaatggatgcgcta	Protospacer
****************************.***

42. spacer 2.7|1267295|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042502 (Enterobacter sp. E76 plasmid pE76_003, complete sequence) position: , mismatch: 2, identity: 0.938

cttcatacctttaacagcaccttccgggctgt	CRISPR spacer
cttcatacctttaaccgcaccttccgggctat	Protospacer
*************** **************.*

43. spacer 2.26|1268454|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP763470 (Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence) position: , mismatch: 2, identity: 0.938

ggtgaggtacagaccaaagcgccgctggacag	CRISPR spacer
agtgaggtacagaccaaagccccgctggacag	Protospacer
.******************* ***********

44. spacer 2.26|1268454|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 2, identity: 0.938

ggtgaggtacagaccaaagcgccgctggacag	CRISPR spacer
gacgaggtacagaccaaagcgccgctggacag	Protospacer
*..*****************************

45. spacer 2.26|1268454|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP053410 (Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.938

ggtgaggtacagaccaaagcgccgctggacag	CRISPR spacer
agtgaggcacagaccaaagcgccgctggacag	Protospacer
.******.************************

46. spacer 2.26|1268454|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NC_010393 (Phage Gifsy-2, complete genome) position: , mismatch: 2, identity: 0.938

ggtgaggtacagaccaaagcgccgctggacag	CRISPR spacer
gacgaggtacagaccaaagcgccgctggacag	Protospacer
*..*****************************

47. spacer 2.26|1268454|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NC_010392 (Phage Gifsy-1, complete genome) position: , mismatch: 2, identity: 0.938

ggtgaggtacagaccaaagcgccgctggacag	CRISPR spacer
gacgaggtacagaccaaagcgccgctggacag	Protospacer
*..*****************************

48. spacer 2.31|1268759|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP763470 (Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence) position: , mismatch: 2, identity: 0.938

ttgtgcattgattctgaaaatataatccgttc	CRISPR spacer
ttgtgcattgactccgaaaatataatccgttc	Protospacer
***********.**.*****************

49. spacer 2.31|1268759|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP763470 (Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence) position: , mismatch: 2, identity: 0.938

ttgtgcattgattctgaaaatataatccgttc	CRISPR spacer
ttgtgcattgactccgaaaatataatccgttc	Protospacer
***********.**.*****************

50. spacer 2.29|1268637|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042502 (Enterobacter sp. E76 plasmid pE76_003, complete sequence) position: , mismatch: 3, identity: 0.906

gaacatcagaccttatcacctggtggcaatcg	CRISPR spacer
ggacatcagaccttatcacctggtggaaatct	Protospacer
*.************************ ****

51. spacer 2.35|1269003|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to AGRM01000007 (Salmonella enterica subsp. houtenae str. ATCC BAA-1581 plasmid pSEHO0A2, complete sequence, whole genome shotgun sequence) position: , mismatch: 4, identity: 0.875

tttgcgctcgctgacgtcaacagcttctacgc	CRISPR spacer
tacgccctggctgacgtcaacagcttctacgc	Protospacer
* .** ** ***********************

52. spacer 2.35|1269003|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029990 (Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence) position: , mismatch: 4, identity: 0.875

tttgcgctcgctgacgtcaacagcttctacgc	CRISPR spacer
tacgccctggctgacgtcaacagcttctacgc	Protospacer
* .** ** ***********************

53. spacer 2.35|1269003|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030197 (Salmonella enterica strain SA20051401 plasmid pSA20051401.1, complete sequence) position: , mismatch: 4, identity: 0.875

tttgcgctcgctgacgtcaacagcttctacgc	CRISPR spacer
tacgccctggctgacgtcaacagcttctacgc	Protospacer
* .** ** ***********************

54. spacer 2.35|1269003|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030218 (Salmonella enterica strain SA20075157 plasmid pSA20075157.1, complete sequence) position: , mismatch: 4, identity: 0.875

tttgcgctcgctgacgtcaacagcttctacgc	CRISPR spacer
tacgccctggctgacgtcaacagcttctacgc	Protospacer
* .** ** ***********************

55. spacer 2.35|1269003|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030177 (Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 plasmid pIncFII.2, complete sequence) position: , mismatch: 4, identity: 0.875

tttgcgctcgctgacgtcaacagcttctacgc	CRISPR spacer
tacgccctggctgacgtcaacagcttctacgc	Protospacer
* .** ** ***********************

56. spacer 2.35|1269003|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025255 (Salmonella enterica subsp. enterica serovar Newport str. CDC 2010K-2159 plasmid pSNE1-2010K-2159, complete sequence) position: , mismatch: 4, identity: 0.875

tttgcgctcgctgacgtcaacagcttctacgc	CRISPR spacer
tacgccctggctgacgtcaacagcttctacgc	Protospacer
* .** ** ***********************

57. spacer 2.35|1269003|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP053415 (Salmonella enterica strain 2011K-0868 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.875

tttgcgctcgctgacgtcaacagcttctacgc	CRISPR spacer
tacgccctggctgacgtcaacagcttctacgc	Protospacer
* .** ** ***********************

58. spacer 2.35|1269003|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP053327 (Salmonella enterica subsp. salamae serovar 58:c:z6 strain 2013K-0366 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.875

tttgcgctcgctgacgtcaacagcttctacgc	CRISPR spacer
tacgccctggctgacgtcaacagcttctacgc	Protospacer
* .** ** ***********************

59. spacer 2.35|1269003|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030289 (Salmonella enterica subsp. enterica serovar Gaminara str. SA20063285 plasmid pIncI1.1, complete sequence) position: , mismatch: 4, identity: 0.875

tttgcgctcgctgacgtcaacagcttctacgc	CRISPR spacer
tacgccctggctgacgtcaacagcttctacgc	Protospacer
* .** ** ***********************

60. spacer 2.35|1269003|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033339 (Salmonella enterica subsp. enterica serovar Anatum strain CFSAN076215 plasmid pCFSAN076215, complete sequence) position: , mismatch: 4, identity: 0.875

tttgcgctcgctgacgtcaacagcttctacgc	CRISPR spacer
tacgccctggctgacgtcaacagcttctacgc	Protospacer
* .** ** ***********************

61. spacer 2.35|1269003|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024167 (Salmonella enterica subsp. enterica serovar Gaminara strain CFSAN070644 plasmid pCFSAN024441_02, complete sequence) position: , mismatch: 4, identity: 0.875

tttgcgctcgctgacgtcaacagcttctacgc	CRISPR spacer
tacgccctggctgacgtcaacagcttctacgc	Protospacer
* .** ** ***********************

62. spacer 2.35|1269003|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022118 (Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.875

tttgcgctcgctgacgtcaacagcttctacgc	CRISPR spacer
ttcgttctggctgacgtcaacagcttctacgc	Protospacer
**.*. ** ***********************

63. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019281 (Escherichia coli strain 13P484A plasmid p13P484A-1, complete sequence) position: , mismatch: 5, identity: 0.844

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
ggagaaactaacgcatgaacagtttaacggca	Protospacer
*...****.*********************.*

64. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to AP012536 (Stx2-converting phage Stx2a_1447 proviral DNA, complete genome) position: , mismatch: 5, identity: 0.844

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
ggagaaactaacgcatgaacagtttaacggca	Protospacer
*...****.*********************.*

65. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to JQ182728 (Enterobacteria phage mEp460, complete genome) position: , mismatch: 5, identity: 0.844

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
ggagaaactaacgcatgaacagtttaacggca	Protospacer
*...****.*********************.*

66. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to KF030445 (Escherichia phage 1720a-02, complete genome) position: , mismatch: 5, identity: 0.844

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
ggagaaactaacgcatgaacagtttaacggca	Protospacer
*...****.*********************.*

67. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to MF807953 (Escherichia phage Ayreon, complete genome) position: , mismatch: 5, identity: 0.844

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
ggagaaactaacgcatgaacagtttaacggca	Protospacer
*...****.*********************.*

68. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NC_003444 (Enterobacteria phage SfV, complete genome) position: , mismatch: 5, identity: 0.844

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
ggagaaactaacgcatgaacagtttaacggca	Protospacer
*...****.*********************.*

69. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NC_049941 (Stx2-converting phage Stx2a_WGPS2 proviral DNA, complete genome) position: , mismatch: 5, identity: 0.844

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
ggagaaactaacgcatgaacagtttaacggca	Protospacer
*...****.*********************.*

70. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to U82619 (Shigella flexneri bacteriophage V, complete genome) position: , mismatch: 5, identity: 0.844

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
ggagaaactaacgcatgaacagtttaacggca	Protospacer
*...****.*********************.*

71. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NC_009514 (Phage cdtI DNA, complete genome) position: , mismatch: 5, identity: 0.844

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
ggagaaactaacgcatgaacagtttaacggca	Protospacer
*...****.*********************.*

72. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to LR595862 (Escherichia virus Lambda_2H10 genome assembly, chromosome: 1) position: , mismatch: 5, identity: 0.844

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
ggagaaactaacgcatgaacagtttaacggca	Protospacer
*...****.*********************.*

73. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to MT225100 (Escherichia phage Lys8385Vzw, complete genome) position: , mismatch: 5, identity: 0.844

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
ggagaaactaacgcatgaacagtttaacggca	Protospacer
*...****.*********************.*

74. spacer 2.2|1266990|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to JX866719 (Klebsiella phage JD001, complete genome) position: , mismatch: 6, identity: 0.812

ttatacggacagaacgacgcaataccggtttt	CRISPR spacer
ttatacggacagaacgacgcgataccaacctg	Protospacer
********************.*****....*

75. spacer 2.2|1266990|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to MT894004 (Klebsiella phage MEW1, complete genome) position: , mismatch: 6, identity: 0.812

ttatacggacagaacgacgcaataccggtttt	CRISPR spacer
ttatacggacagaacgacgcgataccaacctg	Protospacer
********************.*****....*

76. spacer 2.2|1266990|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to NC_041900 (Klebsiella phage vB_KpnM_KpV52, complete genome) position: , mismatch: 6, identity: 0.812

ttatacggacagaacgacgcaataccggtttt	CRISPR spacer
ttgtacggacagaacgatgcaataccgacctg	Protospacer
**.**************.*********...*

77. spacer 2.2|1266990|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to MG432137 (Pectobacterium phage PEAT2, complete genome) position: , mismatch: 6, identity: 0.812

ttatacggacagaacgacgcaataccggtttt	CRISPR spacer
ttgtacggacagaacgatgcaataccgacctg	Protospacer
**.**************.*********...*

78. spacer 2.2|1266990|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to MG197810 (Klebsiella phage 1611E-K2-1, complete genome) position: , mismatch: 7, identity: 0.781

ttatacggacagaacgacgcaataccggtttt	CRISPR spacer
ttgtacggacagaacgacgcgataccaacctg	Protospacer
**.*****************.*****....*

79. spacer 2.12|1267600|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX426231 (Acinetobacter lwoffii strain EK30A plasmid pALWEK1.5, complete sequence) position: , mismatch: 7, identity: 0.781

aagagtgtcaccaatccgccaatagcaggagt	CRISPR spacer
aagagtgtaaccaatcagccaatagatctatt	Protospacer
******** ******* ********    * *

80. spacer 2.22|1268210|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP001774 (Spirosoma linguale DSM 74 plasmid pSLIN05, complete sequence) position: , mismatch: 7, identity: 0.781

cccccatcactgtattgtgtatagtagtcctc	CRISPR spacer
gcctgatcactgtattgtttatagaagtcatt	Protospacer
 **. ************* ***** **** *.

81. spacer 2.26|1268454|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014707 (Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence) position: , mismatch: 7, identity: 0.781

ggtgaggtacagaccaaagcgccgctggacag	CRISPR spacer
agcgagacgcaaaccaaagccccgctggacag	Protospacer
.*.***...**.******** ***********

82. spacer 2.26|1268454|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ggtgaggtacagaccaaagcgccgctggacag	CRISPR spacer
agcgagacgcaaaccaaagccccgctggacag	Protospacer
.*.***...**.******** ***********

83. spacer 2.26|1268454|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ggtgaggtacagaccaaagcgccgctggacag	CRISPR spacer
agcgagacgcaaaccaaagccccgctggacag	Protospacer
.*.***...**.******** ***********

84. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 7, identity: 0.781

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
ggagaaactaacgcatgaacagtttaacaaca	Protospacer
*...****.*******************...*

85. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NC_021857 (Shigella phage SfII, complete genome) position: , mismatch: 7, identity: 0.781

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
ggagaaactaacgcatgaacagtttaacaaca	Protospacer
*...****.*******************...*

86. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to KC814930 (Shigella phage SfIV, complete genome) position: , mismatch: 7, identity: 0.781

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
ggagaaactaacgcatgaacagtttaacaaca	Protospacer
*...****.*******************...*

87. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to LR595868 (Escherichia virus mEp460_4F5 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
ggagaaactaacgcatgaacagtttaacaaca	Protospacer
*...****.*******************...*

88. spacer 2.36|1269064|32|CP030219|CRISPRCasFinder,CRT matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 7, identity: 0.781

ctgccggtcaggctgctgaagttactgtggtc	CRISPR spacer
ccgccggtcaggctgctgaagatgctgcctgc	Protospacer
*.******************* *.***.   *

89. spacer 2.36|1269064|32|CP030219|CRISPRCasFinder,CRT matches to NC_048047 (Caulobacter phage CcrBL9, complete genome) position: , mismatch: 7, identity: 0.781

ctgccggtcaggctgctgaagttactgtggtc	CRISPR spacer
ccgccggtcaggctgctgaagatgctgcccgc	Protospacer
*.******************* *.***.   *

90. spacer 2.4|1267112|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030935 (Enterococcus gilvus strain CR1 plasmid pCR1C, complete sequence) position: , mismatch: 8, identity: 0.75

aaactgagtaaaaaagaagtggcggtgcttac	CRISPR spacer
aaactgagtaaaaaacaagtagctagaattat	Protospacer
*************** ****.** . . ***.

91. spacer 2.4|1267112|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to AP014022 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C112A-MedDCM-OCT-S32-C75, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

aaactgagtaaaaaagaagtggc------ggtgcttac	CRISPR spacer
aaactgagcaaaaaagaagtcgccagcaaggt------	Protospacer
********.*********** **      ***

92. spacer 2.4|1267112|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to AP014023 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C112A-MedDCM-OCT-S35-C64, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

aaactgagtaaaaaagaagtggc------ggtgcttac	CRISPR spacer
aaactgagcaaaaaagaagtcgccagcaaggt------	Protospacer
********.*********** **      ***

93. spacer 2.6|1267234|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to MG945570 (UNVERIFIED: Microviridae sp. isolate 3500-1801, complete genome) position: , mismatch: 8, identity: 0.75

agtacagaataaggatgaatacgcccagcgcc-	CRISPR spacer
gaaccagaacaaggatgaatacgctca-cgcgg	Protospacer
..  *****.**************.** ***

94. spacer 2.12|1267600|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to MG945714 (UNVERIFIED: Microviridae sp. isolate 1977-1801, complete genome) position: , mismatch: 8, identity: 0.75

aagagtgtcaccaatccgccaatagcaggagt	CRISPR spacer
acaagcgtcaccagtccgccaatagcaaaaca	Protospacer
* .**.*******.*************..*

95. spacer 2.15|1267783|32|CP030219|CRISPRCasFinder,CRT matches to NZ_CP045276 (Bacillus megaterium strain FDU301 plasmid pFDU301D, complete sequence) position: , mismatch: 8, identity: 0.75

tttggggaagaatccgaaaaggaaattaaatc	CRISPR spacer
ttaatagaagaatgcaaaaaggaaattaaagg	Protospacer
** . .******* *.**************

96. spacer 2.16|1267844|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 8, identity: 0.75

----cgccacaaattttcggcgttaccactggttcc	CRISPR spacer
atggcgt----aatttacggcgttacaactggttac	Protospacer
    **.    ***** ********* ******* *

97. spacer 2.19|1268027|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025614 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

aactagagtactgggtggaataatgaaatcac	CRISPR spacer
attcacagtaatgggaggaataatgaaattat	Protospacer
* ..* **** **** *************.*.

98. spacer 2.26|1268454|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022994 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN4, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgaggtacagaccaaagcgccgctggacag	CRISPR spacer
gtgaatgcgcagaccaaggcgccgctggccag	Protospacer
*  .* *..********.********** ***

99. spacer 2.26|1268454|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026110 (Paraburkholderia hospita strain DSM 17164 plasmid pEMT1, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgaggtacagaccaaagcgccgctggacag	CRISPR spacer
gtgaatgcgcagaccaaggcgccgctggccag	Protospacer
*  .* *..********.********** ***

100. spacer 2.29|1268637|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to MN582070 (Myoviridae sp. ctThM1, complete genome) position: , mismatch: 8, identity: 0.75

gaacatcagaccttatcacctggtggcaatcg	CRISPR spacer
ggacagcagaccttatcaccttgtgaatctcc	Protospacer
*.*** *************** ***.   **

101. spacer 2.31|1268759|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to MN812206 (Flavobacterium phage vB_FspS_filifjonk9-1, complete genome) position: , mismatch: 8, identity: 0.75

ttgtgcattgattctgaaaatataatccgttc	CRISPR spacer
ccgtgtattgattttgaaaatataatttgatt	Protospacer
..***.*******.************..* *.

102. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 8, identity: 0.75

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
ggagaaactaacgcatgaacagtttaaaccga	Protospacer
*...****.******************    *

103. spacer 2.3|1267051|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028352 (Pantoea vagans strain PV989 plasmid pPV989-94, complete sequence) position: , mismatch: 9, identity: 0.719

cgacgaggaaacccgcgcggactttgaaaacc	CRISPR spacer
tcaggaggaaacacgcgcggtctttgagcgca	Protospacer
. * ******** ******* ******. .*

104. spacer 2.4|1267112|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to NC_002094 (Marinococcus halophilus plasmid pPL1, complete sequence) position: , mismatch: 9, identity: 0.719

aaactgagtaaaaaagaagtggcggtgcttac	CRISPR spacer
accaatagcaaaaaagaagtggcggagctggc	Protospacer
*     **.**************** *** .*

105. spacer 2.9|1267417|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 9, identity: 0.719

gtaaaatagtaaaaataccatcaaattataat	CRISPR spacer
aacttacattagaaattccatcaaattataat	Protospacer
.    *.* **.**** ***************

106. spacer 2.12|1267600|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to MK937603 (Gordonia phage Bakery, complete genome) position: , mismatch: 9, identity: 0.719

aagagtgtcaccaatccgccaatagcaggagt	CRISPR spacer
agtgcggtcaccaatccgcctacagcaggacc	Protospacer
*. .  ************** *.******* .

107. spacer 2.13|1267661|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to MN693015 (Marine virus AFVG_117M67, complete genome) position: , mismatch: 9, identity: 0.719

atgcgatggcgtcatagaactcctgagctgta	CRISPR spacer
caaggatggcgtcatcgaactcctgagagctt	Protospacer
  . *********** ***********   *

108. spacer 2.13|1267661|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to MN694442 (Marine virus AFVG_250M595, complete genome) position: , mismatch: 9, identity: 0.719

atgcgatggcgtcatagaactcctgagctgta	CRISPR spacer
caaggatggcgtcatcgaactcctgagagctt	Protospacer
  . *********** ***********   *

109. spacer 2.21|1268149|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to MN484601 (Gordonia phage Sixama, complete genome) position: , mismatch: 9, identity: 0.719

ctgattttgtggatgtgatggaactggttaac	CRISPR spacer
atgattttgtggacgtcatggaacaagtggca	Protospacer
 ************.** ******* .** .

110. spacer 2.21|1268149|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to MG676225 (Aeromonas phage AhSzw-1, complete genome) position: , mismatch: 9, identity: 0.719

ctgattttgtggatgtgatggaactggttaac	CRISPR spacer
cgcttaaagtggctgtgatggaactggtgaag	Protospacer
*   *   **** *************** **

111. spacer 2.24|1268332|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012899 (Burkholderia sp. CCGE1001 plasmid pCCGE1001a, complete sequence) position: , mismatch: 9, identity: 0.719

gtctaaccctgcttgctcactttctcgcggtg	CRISPR spacer
gcgtaaccctgcttgcgcacttgctcaatctc	Protospacer
*. ************* ***** ***.   *

112. spacer 2.24|1268332|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021026 (Rhizobium sp. TAL182 plasmid pRetTAL182b, complete sequence) position: , mismatch: 9, identity: 0.719

gtctaaccctgcttgctcactttctcgcggtg-	CRISPR spacer
tggaaaccctgcttgcgcactttgtcg-gtcgc	Protospacer
    ************ ****** *** * .*

113. spacer 2.24|1268332|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013513 (Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence) position: , mismatch: 9, identity: 0.719

gtctaaccctgcttgctcactttctcgcggtg-	CRISPR spacer
tggaaaccctgcttgcgcactttgtcg-gtcgc	Protospacer
    ************ ****** *** * .*

114. spacer 2.24|1268332|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013603 (Rhizobium sp. N731 plasmid pRspN731b, complete sequence) position: , mismatch: 9, identity: 0.719

gtctaaccctgcttgctcactttctcgcggtg-	CRISPR spacer
tggaaaccctgcttgcgcactttgtcg-gtcgc	Protospacer
    ************ ****** *** * .*

115. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030842 (Acidisarcina polymorpha strain SBC82 plasmid pACPOL2, complete sequence) position: , mismatch: 9, identity: 0.719

gagaaaaccaacgcatgaacagttt----aacggta	CRISPR spacer
tggaaaaccaacgcaggcacagttttctcagc----	Protospacer
 .************* * *******    *.*

116. spacer 2.33|1268881|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to KM389288 (UNVERIFIED: Escherichia phage Phi06_2987 S clone contig00002 genomic sequence) position: , mismatch: 9, identity: 0.719

gagaaaaccaacgcatgaacagtttaacggta	CRISPR spacer
ggagaaactaacgcatgaacagtgtaaaccga	Protospacer
*...****.************** ***    *

117. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KR270450 (Staphylococcus aureus strain SM31 plasmid pSM31, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

118. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018769 (Staphylococcus aureus subsp. aureus strain UCI 28 plasmid pUCI28, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

119. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007658 (Staphylococcus aureus strain V2200 plasmid pV2200, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

120. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT671860 (Staphylococcus aureus subsp. aureus isolate Clinical isolate plasmid II) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

121. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022911 (Staphylococcus aureus strain 164 plasmid pPS00089.1A.1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

122. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029475 (Staphylococcus aureus strain USA 100 isolate 30-47 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

123. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP030682 (Staphylococcus aureus strain ER05857.3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

124. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KF831356 (Staphylococcus aureus strain A960649 plasmid pBU108b, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

125. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP030687 (Staphylococcus aureus strain ER02919.3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

126. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029659 (Staphylococcus aureus strain AR_0467 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

127. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NC_018972 (Staphylococcus aureus plasmid pWBG744, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

128. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NC_019007 (Staphylococcus aureus plasmid SAP048A, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

129. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NC_019008 (Staphylococcus aureus plasmid SAP074A, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

130. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NC_019010 (Staphylococcus aureus plasmid pSK67, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

131. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029679 (Staphylococcus aureus strain AR_0215 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

132. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to LC377536 (Staphylococcus aureus plasmid pNTUH_9448 NTUH_9448 DNA, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

133. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NC_018976 (Staphylococcus aureus plasmid p19321-P03, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

134. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007677 (Staphylococcus aureus strain HUV05 plasmid pHUV05-01, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

135. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007678 (Staphylococcus aureus strain HUV05 plasmid pHUV05-02, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

136. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR130512 (Staphylococcus aureus strain BPH2819 isolate BPH2819 plasmid 2) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

137. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029085 (Staphylococcus aureus strain AR462 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

138. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029081 (Staphylococcus aureus strain AR465 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

139. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017683 (Staphylococcus aureus strain CFSAN007850 plasmid pCFSAN007850, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

140. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NC_013318 (Staphylococcus aureus plasmid SAP012A, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

141. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NC_013335 (Staphylococcus aureus plasmid SAP060A, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

142. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053641 (Staphylococcus aureus strain 14505 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

143. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP030472 (Staphylococcus aureus strain ER01121.3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

144. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047855 (Staphylococcus aureus strain UP_1525 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

145. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047860 (Staphylococcus aureus strain UP_1405 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

146. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047864 (Staphylococcus aureus strain UP_1106 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

147. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047862 (Staphylococcus aureus strain UP_1322 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

148. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007455 (Staphylococcus aureus strain 502A isolate RN6607 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

149. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP030500 (Staphylococcus aureus strain ER02612.3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

150. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP030711 (Staphylococcus aureus strain ER01174.3 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

151. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP030691 (Staphylococcus aureus strain ER01422.3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

152. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047866 (Staphylococcus aureus strain UP_844 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

153. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047821 (Staphylococcus aureus strain UP_1395 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

154. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047818 (Staphylococcus aureus strain UP_1433 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

155. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010891 (Staphylococcus aureus strain SA564 plasmid pSA564, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

156. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP030627 (Staphylococcus aureus strain ER01823.3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

157. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035792 (Staphylococcus aureus strain 592 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

158. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP030543 (Staphylococcus aureus strain ER04166.3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

159. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045867 (Staphylococcus aureus strain CFSAN007894 plasmid pCFSAN007894, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

160. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to MK992500 (Staphylococcus aureus strain 5Sau489 plasmid p5Sau489, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

161. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP030594 (Staphylococcus aureus strain ER03588.3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

162. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to MK992499 (Staphylococcus aureus strain 17Sau58 plasmid p17Sau58, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

163. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP030423 (Staphylococcus aureus strain ER02972.3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

164. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029654 (Staphylococcus aureus strain AR_0469 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

165. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039163 (Staphylococcus aureus strain Lr12 plasmid pLr12, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

166. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP030504 (Staphylococcus aureus strain ER04402.3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

167. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP030546 (Staphylococcus aureus strain ER04181.3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

168. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047858 (Staphylococcus aureus strain UP_1435 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

169. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040561 (Staphylococcus aureus strain Col52-A5 plasmid pCOL52-A5, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

170. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP030440 (Staphylococcus aureus strain ER02746.3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

171. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP030450 (Staphylococcus aureus strain ER04225.3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

172. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP030392 (Staphylococcus aureus strain ER04142.3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

173. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP030389 (Staphylococcus aureus strain ER01689.3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

174. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029672 (Staphylococcus aureus strain AR_0220 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

175. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029662 (Staphylococcus aureus strain AR_0228 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

176. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP030589 (Staphylococcus aureus strain ER04314.3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

177. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029670 (Staphylococcus aureus strain AR_0222 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

178. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NC_017344 (Staphylococcus aureus subsp. aureus ECT-R 2 plasmid pLUH02, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

179. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029656 (Staphylococcus aureus strain AR_0468 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

180. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053355 (Staphylococcus aureus strain 14507 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

181. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH785232 (Staphylococcus aureus strain ch5 plasmid pLUH02, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

182. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH785250 (Staphylococcus aureus strain ch3 plasmid pLUH02, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

183. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MF622050 (Staphylococcus aureus strain ST6 plasmid pSA564-fus, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

184. spacer 2.34|1268942|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to CP030551 (Staphylococcus aureus strain ER03481.3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaattccagtaaaaacaatggatgcacta	CRISPR spacer
caaaaatttcagcaaaaacaatgactattttg	Protospacer
********.***.**********. *.. .*.

185. spacer 2.36|1269064|32|CP030219|CRISPRCasFinder,CRT matches to NZ_CP049252 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

ctgccggtcaggctgctgaagttactgtggtc	CRISPR spacer
ctgtcggtcaggatgctgaagttctcgaaggt	Protospacer
***.******** ********** ..* .* .

186. spacer 2.36|1269064|32|CP030219|CRISPRCasFinder,CRT matches to HQ110084 (Erwinia phage ENT90, complete genome) position: , mismatch: 9, identity: 0.719

ctgccggtcaggctgctgaagttactgtggtc	CRISPR spacer
ctgtcggtcaggctgcggaagtttattccttt	Protospacer
***.************ ******  * .  *.

187. spacer 2.7|1267295|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to GU942563 (Vibrio phage CTX chromosome I prophage, complete sequence) position: , mismatch: 10, identity: 0.688

cttcatacctttaacagcaccttccgggctgt	CRISPR spacer
cttaatacctttaaaagcaccttttcactcgg	Protospacer
*** ********** ********.. . ..*

188. spacer 2.7|1267295|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to GU942563 (Vibrio phage CTX chromosome I prophage, complete sequence) position: , mismatch: 10, identity: 0.688

cttcatacctttaacagcaccttccgggctgt	CRISPR spacer
cttaatacctttaaaagcaccttttcactcgg	Protospacer
*** ********** ********.. . ..*

189. spacer 2.7|1267295|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to AF414369 (Vibrio phage CTX RstA2 (rstA2) gene, partial cds; and RstB2 (rstB2), Cep (cep), OrfU (orfU), Ace (ace), Zot (zot), CtxA (ctxA), and CtxB (ctxB) genes, complete cds) position: , mismatch: 10, identity: 0.688

cttcatacctttaacagcaccttccgggctgt	CRISPR spacer
cttaatacctttaaaagcaccttttcactcgg	Protospacer
*** ********** ********.. . ..*

190. spacer 2.7|1267295|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to AF414368 (Vibrio phage CTX RstA2 (rstA2) gene, partial cds; RstB2 (rstB2), Cep (cep), OrfU (orfU), and Ace (ace) genes, complete cds; and Zot (zot) gene, partial cds) position: , mismatch: 10, identity: 0.688

cttcatacctttaacagcaccttccgggctgt	CRISPR spacer
cttaatacctttaaaagcaccttttcactcgg	Protospacer
*** ********** ********.. . ..*

191. spacer 2.12|1267600|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to MN735434 (Mycobacterium phage Mangeria, complete genome) position: , mismatch: 10, identity: 0.688

aagagtgtcaccaatccgccaatagcaggagt	CRISPR spacer
tgtagtgtcaccgatccgccagtagcgttcct	Protospacer
 . *********.********.****.    *

192. spacer 2.12|1267600|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to MT771340 (Mycobacterium phage Jorgensen, complete genome) position: , mismatch: 10, identity: 0.688

aagagtgtcaccaatccgccaatagcaggagt	CRISPR spacer
tgtagtgtcaccgatccgccagtagcgttcct	Protospacer
 . *********.********.****.    *

193. spacer 2.12|1267600|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to MK016502 (Mycobacterium phage Pat3, complete genome) position: , mismatch: 10, identity: 0.688

aagagtgtcaccaatccgccaatagcaggagt	CRISPR spacer
tgtagtgtcaccgatccgccagtagcgttcct	Protospacer
 . *********.********.****.    *

194. spacer 2.12|1267600|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to MK016491 (Mycobacterium phage BaboJay, complete genome) position: , mismatch: 10, identity: 0.688

aagagtgtcaccaatccgccaatagcaggagt	CRISPR spacer
tgtagtgtcaccgatccgccagtagcgttcct	Protospacer
 . *********.********.****.    *

195. spacer 2.12|1267600|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to MK801726 (Mycobacterium phage ChotaBhai, complete genome) position: , mismatch: 10, identity: 0.688

aagagtgtcaccaatccgccaatagcaggagt	CRISPR spacer
tgtagtgtcaccgatccgccagtagcgttcct	Protospacer
 . *********.********.****.    *

196. spacer 2.12|1267600|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to MH727548 (Mycobacterium phage Galactic, complete genome) position: , mismatch: 10, identity: 0.688

aagagtgtcaccaatccgccaatagcaggagt	CRISPR spacer
tgtagtgtcaccgatccgccagtagcgttcct	Protospacer
 . *********.********.****.    *

197. spacer 2.12|1267600|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to MH399774 (Mycobacterium phage DoctorDiddles, complete genome) position: , mismatch: 10, identity: 0.688

aagagtgtcaccaatccgccaatagcaggagt	CRISPR spacer
tgtagtgtcaccgatccgccagtagcgttcct	Protospacer
 . *********.********.****.    *

198. spacer 2.12|1267600|32|CP030219|PILER-CR,CRISPRCasFinder,CRT matches to JF937098 (Mycobacterium virus Ibhubesi, complete genome) position: , mismatch: 10, identity: 0.688

aagagtgtcaccaatccgccaatagcaggagt	CRISPR spacer
tgtagtgtcaccgatccgccagtagcgttcct	Protospacer
 . *********.********.****.    *

199. spacer 2.15|1267783|32|CP030219|CRISPRCasFinder,CRT matches to CP046513 (Bacillus cereus strain JHU plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.688

tttggggaagaatccgaaaaggaaattaaatc	CRISPR spacer
aaagaaaaagaatcccaaaaagaaattaaaca	Protospacer
   *...******** ****.*********.

200. spacer 2.32|1268820|32|CP030219|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021119 (Streptomyces sp. CLI2509 strain CLI2905 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

ataaaaggctcgttactctcgtgggcattccg	CRISPR spacer
cggcgaggctcgctactctcgtgggaatcgaa	Protospacer
  . .*******.************ **.  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

448649 : 456598

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD69888.1\|448649_449492_+	hypothetical protein	A0A1W6JPK3	Morganella_phage	7.2e-10	37.4
AXD69889.1\|449484_449709_+	hypothetical protein	NA	NA	NA	NA
AXD69890.1\|449701_449977_+	hypothetical protein	NA	NA	NA	NA
AXD69891.1\|449969_450134_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
AXD69892.1\|450126_450321_+	hypothetical protein	NA	NA	NA	NA
AXD69893.1\|450322_450517_+	hypothetical protein	NA	NA	NA	NA
AXD69894.1\|450509_450845_+	hypothetical protein	NA	NA	NA	NA
AXD69895.1\|450850_451516_+	hypothetical protein	NA	NA	NA	NA
AXD69896.1\|451526_451832_+	DUF4222 domain-containing protein	NA	NA	NA	NA
AXD69897.1\|451828_453991_+	DNA primase	A0A1W6JPG0	Morganella_phage	2.6e-181	53.8
AXD69898.1\|454380_454830_+	single-stranded DNA-binding protein	NA	NA	NA	NA
AXD74318.1\|454967_455483_+	proQ/FINO family protein	Q2A0A1	Sodalis_phage	1.4e-11	46.8
AXD69899.1\|455472_455709_+	hypothetical protein	V5YTJ0	Pseudomonas_phage	2.1e-07	53.1
AXD69900.1\|456024_456321_+	type II toxin-antitoxin system RelE/ParE family toxin	A4JWV2	Burkholderia_virus	3.5e-20	49.5
AXD69901.1\|456322_456598_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	7.3e-12	40.0

DBSCAN-SWA_2

640928 : 685053

Salmonella_phage(75.0%)

integrase,plate,portal,lysis,capsid,head,tail,tRNA

attL 642505:642521|attR 692396:692412

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD70069.1\|640928_642494_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.0e-12	33.9
AXD70070.1\|642490_643138_-	PadR family transcriptional regulator	NA	NA	NA	NA
642505:642521	attL	NA	NA	NA	NA
AXD70071.1\|643370_644138_+	siderophore-interacting protein	NA	NA	NA	NA
AXD74328.1\|644554_645640_-\|integrase	site-specific integrase	F1BUS9	Erwinia_phage	1.8e-122	61.7
AXD70072.1\|645643_646537_-	NAD-dependent DNA ligase	NA	NA	NA	NA
AXD70073.1\|646547_647162_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	9.5e-36	39.7
AXD70074.1\|647262_647499_+	regulator	NA	NA	NA	NA
AXD70075.1\|647533_648043_+	hypothetical protein	A0A1S6L008	Salmonella_phage	1.6e-89	100.0
AXD74329.1\|648050_648251_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	3.2e-33	100.0
AXD70076.1\|648214_648556_+	hypothetical protein	A0A1S6L019	Salmonella_phage	2.1e-56	100.0
AXD70077.1\|648623_648857_+	DUF2732 family protein	A0A1S6L021	Salmonella_phage	2.9e-33	98.7
AXD70078.1\|648856_649078_+	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	3.1e-29	86.1
AXD70079.1\|649078_649375_+	hypothetical protein	A0A2D1GP44	Escherichia_phage	2.5e-10	44.3
AXD70080.1\|649371_649650_+	hypothetical protein	A0A0M4R2Q0	Salmonella_phage	8.4e-32	70.5
AXD70081.1\|649642_650647_+	hypothetical protein	B7SYG0	Stenotrophomonas_phage	2.2e-66	42.9
AXD74330.1\|650736_653067_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	96.1
AXD70082.1\|653221_653410_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.7e-26	100.0
AXD70083.1\|653421_653655_+	DinI family protein	A0A1S6L014	Salmonella_phage	2.8e-36	98.7
AXD70084.1\|653783_654524_-	DUF4145 domain-containing protein	A0A1S6L018	Salmonella_phage	1.7e-143	99.6
AXD70085.1\|654882_655128_+	hypothetical protein	NA	NA	NA	NA
AXD70086.1\|655137_655995_+	hypothetical protein	NA	NA	NA	NA
AXD70087.1\|656016_657048_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.3e-182	91.0
AXD70088.1\|657047_658814_-	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	98.8
AXD70089.1\|658956_659790_+\|capsid	capsid protein	A0A1S6KZW9	Salmonella_phage	2.9e-128	88.8
AXD70090.1\|659806_660871_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	2.7e-195	98.9
AXD70091.1\|660874_661525_+	hypothetical protein	E5G6M7	Salmonella_phage	4.9e-115	99.5
AXD70092.1\|661618_662083_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.4e-85	98.7
AXD70093.1\|662082_662286_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	3.8e-34	100.0
AXD70094.1\|662289_662505_+	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
AXD70095.1\|662485_663001_+	lysozyme	E5G6N1	Salmonella_phage	1.2e-95	99.4
AXD70096.1\|662997_663426_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	4.1e-62	92.9
AXD70097.1\|663355_663559_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	2.0e-22	75.4
AXD70098.1\|663521_663953_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	4.4e-72	94.4
AXD70099.1\|663945_664392_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.1e-62	84.9
AXD70100.1\|664460_665039_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	5.9e-96	88.5
AXD70101.1\|665035_665395_+\|plate	baseplate assembly protein	E5G6N7	Salmonella_phage	5.7e-57	94.1
AXD70102.1\|665381_666290_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	4.3e-149	93.7
AXD70103.1\|666282_666888_+\|tail	phage tail protein I	E5G6N9	Salmonella_phage	7.8e-115	97.5
AXD70104.1\|666884_668219_+\|tail	phage tail protein	E5G6P0	Salmonella_phage	7.7e-123	70.8
AXD70105.1\|668221_668650_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	5.3e-41	56.4
AXD70106.1\|668772_669978_+	acyltransferase	A0A088CPR9	Enterobacteria_phage	7.7e-21	26.7
AXD70107.1\|670083_670263_+	hypothetical protein	A0A0F7LDZ0	Escherichia_phage	3.0e-06	88.5
AXD70108.1\|670167_670629_-\|tail	phage tail protein	A0A0M4S6V4	Salmonella_phage	2.7e-27	80.6
AXD70109.1\|671147_672320_+\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	3.9e-211	94.1
AXD70110.1\|672329_672845_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.1e-91	97.7
AXD70111.1\|672899_673202_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	8.0e-44	96.0
AXD70112.1\|673216_673336_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	6.7e-15	97.4
AXD70113.1\|673328_676394_+\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	0.0e+00	78.8
AXD70114.1\|676390_676876_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.6e-73	90.7
AXD70115.1\|676872_677973_+	phage late control D family protein	E5G6Q3	Salmonella_phage	2.7e-190	95.1
AXD70116.1\|678040_678259_+	levansucrase regulator	Q53ZE7	Salmonella_virus	4.9e-27	76.4
AXD70117.1\|678595_679102_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
AXD70118.1\|679618_681601_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	9.0e-35	33.7
AXD70119.1\|681615_683361_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
AXD70120.1\|683596_683812_-	30S ribosomal protein S21	NA	NA	NA	NA
AXD70121.1\|684039_685053_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.8e-109	59.5
692396:692412	attR	NA	NA	NA	NA

DBSCAN-SWA_3

782975 : 829422

Pseudomonas_phage(18.18%)

tRNA,transposase,integrase

attL 788403:788450|attR 830035:830082

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD70214.1\|782975_784085_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	2.6e-07	25.6
AXD70215.1\|784095_784551_+	hypothetical protein	NA	NA	NA	NA
AXD74335.1\|784553_784775_+	transcriptional regulator	A0A2I7S995	Vibrio_phage	1.0e-16	61.1
AXD70216.1\|785629_786514_+	DNA-binding protein	NA	NA	NA	NA
788403:788450	attL	NA	NA	NA	NA
AXD70217.1\|788902_791047_+	hypothetical protein	NA	NA	NA	NA
AXD70218.1\|791224_791983_+	hypothetical protein	NA	NA	NA	NA
AXD70219.1\|792244_792556_-	hypothetical protein	NA	NA	NA	NA
AXD70220.1\|792614_793328_-	transcriptional regulator	NA	NA	NA	NA
AXD70221.1\|793430_794180_-	DUF3944 domain-containing protein	NA	NA	NA	NA
AXD70222.1\|794322_794706_-	hypothetical protein	NA	NA	NA	NA
AXD70223.1\|794783_795023_-	hypothetical protein	NA	NA	NA	NA
AXD70224.1\|795001_795466_-	hypothetical protein	NA	NA	NA	NA
AXD70225.1\|795524_795953_-	DUF2787 domain-containing protein	NA	NA	NA	NA
AXD70226.1\|796000_796432_-	hypothetical protein	NA	NA	NA	NA
AXD70227.1\|796424_796778_-	hypothetical protein	NA	NA	NA	NA
AXD70228.1\|797296_798607_+	hypothetical protein	Q9T1P3	Pseudomonas_phage	5.8e-22	28.3
AXD70229.1\|798692_800606_+	hypothetical protein	A0A1B0VP75	Pseudomonas_phage	3.9e-19	27.5
AXD70230.1\|800655_801012_+	DUF4102 domain-containing protein	NA	NA	NA	NA
AXD70231.1\|801066_802251_-\|integrase	integrase	A0A221SAN4	Ralstonia_phage	3.6e-31	32.0
AXD70232.1\|802651_803149_+	hypothetical protein	NA	NA	NA	NA
AXD70233.1\|803559_804846_-	hypothetical protein	NA	NA	NA	NA
AXD70234.1\|804849_805935_-	nucleoid-associated protein	NA	NA	NA	NA
AXD70235.1\|806266_806551_+\|transposase	IS3 family transposase	NA	NA	NA	NA
AXD70236.1\|806547_807402_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.1e-81	55.4
AXD70237.1\|807614_808331_-	two-component system response regulator ArcA	NA	NA	NA	NA
AXD70238.1\|808426_808567_+	hypothetical protein	NA	NA	NA	NA
AXD70239.1\|808848_809043_-	hypothetical protein	NA	NA	NA	NA
AXD70240.1\|808966_809653_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
AXD74336.1\|809866_809932_+	thr operon leader peptide	NA	NA	NA	NA
AXD70241.1\|810013_812476_+	bifunctional aspartate kinase/homoserine dehydrogenase I	NA	NA	NA	NA
AXD70242.1\|812477_813407_+	homoserine kinase	NA	NA	NA	NA
AXD70243.1\|813410_814697_+	threonine synthase	NA	NA	NA	NA
AXD70244.1\|814747_815521_-	peroxide stress protein YaaA	NA	NA	NA	NA
AXD70245.1\|815599_817030_-	sodium:alanine symporter family protein	NA	NA	NA	NA
AXD70246.1\|817298_818252_+	transaldolase	A0A0E3G6C9	Synechococcus_phage	9.7e-11	35.2
AXD70247.1\|818311_818545_-	hypothetical protein	NA	NA	NA	NA
AXD70248.1\|818705_819296_+	molybdopterin adenylyltransferase	NA	NA	NA	NA
AXD70249.1\|819424_819991_-	acetate uptake transporter	NA	NA	NA	NA
AXD70250.1\|820139_820853_-	acidic protein MsyB	NA	NA	NA	NA
AXD70251.1\|820888_821293_-	DUF2541 family protein	NA	NA	NA	NA
AXD70252.1\|821642_823559_+	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	5.8e-148	48.9
AXD70253.1\|823644_824772_+	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	5.5e-29	33.2
AXD70254.1\|825049_825997_+	LysR family transcriptional regulator	NA	NA	NA	NA
AXD70255.1\|826123_826468_+	hypothetical protein	NA	NA	NA	NA
AXD70256.1\|826528_827062_-	hypothetical protein	A0A0U2I1S0	Escherichia_phage	8.8e-54	56.6
AXD70257.1\|827078_827522_-	transcriptional regulator	NA	NA	NA	NA
AXD70258.1\|828286_828571_+\|transposase	IS3 family transposase	NA	NA	NA	NA
AXD70259.1\|828567_829422_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.1e-81	55.4
830035:830082	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1509750 : 1515898

Shigella_phage(33.33%)

tail,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD70867.1\|1509750_1510035_-	VRR-NUC domain-containing protein	B6SD64	Bacteriophage	3.7e-27	64.0
AXD70868.1\|1510037_1510517_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.3e-69	80.8
AXD70869.1\|1510517_1510733_-	hypothetical protein	NA	NA	NA	NA
AXD70870.1\|1510743_1510947_-	hypothetical protein	NA	NA	NA	NA
AXD70871.1\|1510943_1511156_-	hypothetical protein	NA	NA	NA	NA
AXD70872.1\|1512647_1512932_+\|transposase	IS3 family transposase	NA	NA	NA	NA
AXD70873.1\|1512928_1513783_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.1e-81	55.4
AXD74366.1\|1513806_1514883_+\|tail	phage tail protein	M1PVV2	Vibrio_phage	1.0e-45	32.5
AXD74367.1\|1514921_1515464_+\|plate	baseplate assembly protein	A0A077KAY0	Edwardsiella_phage	3.5e-05	31.7
AXD70874.1\|1515460_1515898_+	hypothetical protein	A0A0C4UR04	Shigella_phage	1.2e-16	50.5

DBSCAN-SWA_5

2102372 : 2129099

Salmonella_phage(78.79%)

terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD71377.1\|2102372_2103554_+	DUF4102 domain-containing protein	A0A0M4QX09	Salmonella_phage	6.0e-212	90.3
AXD74394.1\|2103534_2103726_-	AlpA family transcriptional regulator	A0A0M4RTZ2	Salmonella_phage	1.6e-21	77.4
AXD71378.1\|2103902_2104142_-	DUF4060 family protein	H6WRW9	Salmonella_phage	9.7e-37	98.7
AXD71379.1\|2104184_2105342_-	enterohemolysin	S4TTE8	Salmonella_phage	1.6e-217	100.0
AXD71380.1\|2105304_2108232_-	exodeoxyribonuclease	H6WRX1	Salmonella_phage	0.0e+00	97.0
AXD71381.1\|2108358_2108709_-	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	3.5e-59	94.8
AXD71382.1\|2108730_2108901_-	hypothetical protein	H6WRX3	Salmonella_phage	1.3e-14	80.0
AXD71383.1\|2109299_2109704_-	transcriptional regulator	H6WRX4	Salmonella_phage	4.6e-71	99.3
AXD71384.1\|2109833_2110070_+	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	7.4e-37	96.2
AXD74395.1\|2110143_2110413_+	transcriptional regulator	H6WRX6	Salmonella_phage	4.6e-19	56.5
AXD71385.1\|2110503_2111415_+	hypothetical protein	H6WRX7	Salmonella_phage	3.1e-123	71.4
AXD71386.1\|2111417_2112167_+	DNA replication protein DnaC	S4TNF5	Salmonella_phage	7.3e-139	99.6
AXD71387.1\|2112177_2112525_+	DUF977 family protein	H6WRX9	Salmonella_phage	2.5e-57	97.4
AXD71388.1\|2112521_2112923_+	chromosome partitioning protein ParB	S4TTI6	Salmonella_phage	2.4e-72	97.7
AXD71389.1\|2112919_2113237_+	hypothetical protein	I6RSM9	Salmonella_phage	8.1e-23	87.9
AXD71390.1\|2113236_2113992_+	hypothetical protein	H6WRY1	Salmonella_phage	4.2e-150	99.6
AXD71391.1\|2114002_2114704_+	DUF550 domain-containing protein	A0A0M4RTV1	Salmonella_phage	1.5e-37	49.8
AXD71392.1\|2114797_2115064_+	hypothetical protein	S4TNF2	Salmonella_phage	2.2e-45	96.6
AXD71393.1\|2115243_2115483_+	DinI family protein	H6WRY5	Salmonella_phage	3.9e-38	100.0
AXD71394.1\|2115472_2115778_+	hypothetical protein	H6WRY6	Salmonella_phage	9.8e-42	100.0
AXD71395.1\|2115817_2116420_+	DUF1367 family protein	A0A0M4QX23	Salmonella_phage	7.5e-110	99.0
AXD71396.1\|2116419_2116626_+	hypothetical protein	H6WRY8	Salmonella_phage	7.8e-35	100.0
AXD71397.1\|2116628_2117270_+	hypothetical protein	S4TSR3	Salmonella_phage	5.3e-114	98.1
AXD71398.1\|2117266_2117413_+	YlcG family protein	H6WRZ0	Salmonella_phage	1.5e-19	100.0
AXD71399.1\|2117402_2118200_+	antitermination protein	H6WRZ1	Salmonella_phage	9.8e-150	98.9
AXD71400.1\|2118598_2118946_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.7e-45	80.4
AXD71401.1\|2118948_2119575_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	3.5e-94	81.2
AXD71402.1\|2119571_2120123_+	DUF2514 domain-containing protein	NA	NA	NA	NA
AXD71403.1\|2120112_2120526_+	hypothetical protein	NA	NA	NA	NA
AXD71404.1\|2120615_2120969_+	negative regulator GrlR	NA	NA	NA	NA
AXD71405.1\|2121066_2122044_+\|terminase	terminase small subunit	I6NV32	Burkholderia_virus	1.6e-24	33.2
AXD71406.1\|2122033_2123305_+	hypothetical protein	A0A0U2JTW9	Escherichia_phage	6.1e-85	38.8
AXD71407.1\|2123304_2124735_+	DUF1073 domain-containing protein	A0A0U2S5X9	Escherichia_phage	3.4e-92	37.9
AXD71408.1\|2124706_2125582_+	hypothetical protein	A0A0U2I1R8	Escherichia_phage	1.4e-56	45.8
AXD71409.1\|2125582_2127157_+	NUDIX hydrolase	Q6UJ14	Burkholderia_virus	1.7e-20	48.6
AXD71410.1\|2127177_2128050_+	hypothetical protein	NA	NA	NA	NA
AXD71411.1\|2128067_2129099_+	DUF2184 domain-containing protein	A0A0U2QQI2	Escherichia_phage	5.6e-73	45.5

DBSCAN-SWA_6

2139112 : 2150960

Escherichia_phage(50.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD71424.1\|2139112_2140339_+	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	9.5e-152	65.6
AXD71425.1\|2140322_2140949_+	hypothetical protein	A0A0U2RK03	Escherichia_phage	1.3e-91	71.6
AXD71426.1\|2140945_2142655_+\|tail	tail fiber protein	A0A0U2SAV1	Escherichia_phage	1.3e-90	65.6
AXD71427.1\|2142651_2143476_+\|tail	phage tail protein	A0A0M4QWS3	Salmonella_phage	9.2e-151	92.7
AXD71428.1\|2143465_2144059_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	5.5e-97	91.1
AXD74397.1\|2144414_2144849_+	hypothetical protein	NA	NA	NA	NA
AXD71429.1\|2144957_2145149_+	DUF2767 family protein	A0A0M4R5C3	Salmonella_phage	5.8e-16	97.7
AXD71430.1\|2145164_2145431_-	hypothetical protein	A0A0M3ULK3	Salmonella_phage	6.1e-40	92.0
AXD71431.1\|2146033_2148310_+	thiosulfate reductase PhsA	A0A077SK27	Escherichia_phage	3.8e-37	26.9
AXD71432.1\|2148324_2148903_+	thiosulfate reductase electron transport protein PhsB	A0A077SL61	Escherichia_phage	5.1e-23	38.2
AXD71433.1\|2148899_2149664_+	thiosulfate reductase cytochrome B subunit	NA	NA	NA	NA
AXD71434.1\|2149787_2150960_+	serine-type D-Ala-D-Ala carboxypeptidase DacD	B6DZZ7	Stx2-converting_phage	2.8e-201	88.2

DBSCAN-SWA_7

2233431 : 2247714

Salmonella_phage(23.08%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD71505.1\|2233431_2234064_-	hypothetical protein	H6WRY3	Salmonella_phage	2.4e-98	89.0
AXD71506.1\|2236180_2236414_-	hypothetical protein	S4TVX5	Salmonella_phage	1.4e-11	47.7
AXD71507.1\|2236410_2236998_-	hypothetical protein	Q5G8U6	Enterobacteria_phage	7.0e-44	63.1
AXD74401.1\|2236997_2237303_-	DNA-binding protein	A0A222YXX1	Escherichia_phage	9.5e-29	63.9
AXD71508.1\|2237338_2238154_-	hypothetical protein	A0A2H4JAZ0	uncultured_Caudovirales_phage	4.2e-87	65.1
AXD71509.1\|2238159_2240667_-	exonuclease VIII	V5UQJ3	Shigella_phage	2.7e-113	45.4
AXD71510.1\|2240824_2241664_-	hypothetical protein	I6XKU1	Burkholderia_virus	5.1e-48	33.8
AXD71511.1\|2241737_2241944_-	cell division inhibitor protein	NA	NA	NA	NA
AXD71512.1\|2241947_2242223_-	hypothetical protein	NA	NA	NA	NA
AXD71513.1\|2242225_2242501_-	hypothetical protein	NA	NA	NA	NA
AXD71514.1\|2242775_2243054_+	DUF2622 domain-containing protein	NA	NA	NA	NA
AXD71515.1\|2243024_2243450_-	hypothetical protein	NA	NA	NA	NA
AXD71516.1\|2243488_2243902_-	post-segregation killing protein PndC	A0A1S6UBS6	Serratia_phage	1.9e-27	50.9
AXD71517.1\|2243961_2244123_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	2.7e-06	55.3
AXD71518.1\|2244304_2244727_-	hypothetical protein	NA	NA	NA	NA
AXD71519.1\|2244806_2245052_-	hypothetical protein	NA	NA	NA	NA
AXD71520.1\|2245102_2245756_-	hypothetical protein	A0A0M4RTW7	Salmonella_phage	4.3e-10	24.2
AXD71521.1\|2245828_2246059_-	hypothetical protein	A0A1B5FPG2	Escherichia_phage	3.8e-06	35.6
AXD71522.1\|2246048_2246948_-	hypothetical protein	A0A0U2SAW4	Escherichia_phage	7.0e-19	33.9
AXD71523.1\|2246967_2247714_-	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	1.6e-85	67.9

DBSCAN-SWA_8

2251012 : 2289457

Escherichia_phage(27.27%)

tail,terminase,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD71528.1\|2251012_2251450_+	recombination protein NinB	G8C7V3	Escherichia_phage	3.0e-52	70.1
AXD71529.1\|2251446_2251641_+	hypothetical protein	S4TNP0	Salmonella_phage	5.1e-12	54.8
AXD71530.1\|2251622_2251934_+	hypothetical protein	G8C7V5	Escherichia_phage	4.7e-39	77.7
AXD71531.1\|2252047_2252395_-	hypothetical protein	NA	NA	NA	NA
AXD71532.1\|2252407_2252806_-	hypothetical protein	NA	NA	NA	NA
AXD71533.1\|2252940_2253222_-	addiction module antidote protein, HigA family	A0A0M3LPV0	Mannheimia_phage	7.2e-07	34.1
AXD71534.1\|2253228_2253510_-	peptidase	A0A2L1IV28	Escherichia_phage	2.2e-19	47.3
AXD71535.1\|2255659_2255911_+	hypothetical protein	NA	NA	NA	NA
AXD74402.1\|2255986_2256274_+	alpha/beta hydrolase	NA	NA	NA	NA
AXD71536.1\|2256254_2256737_+	lysozyme	M9P0E5	Enterobacteria_phage	1.1e-58	72.4
AXD71537.1\|2257164_2258097_+	site-specific DNA-methyltransferase	A0A088FRS2	Escherichia_phage	6.4e-92	52.9
AXD71538.1\|2258093_2258558_+\|lysis	lysis protein	S4TNN7	Salmonella_phage	1.1e-49	68.8
AXD71539.1\|2258706_2259075_-	hypothetical protein	NA	NA	NA	NA
AXD71540.1\|2259145_2259379_-	hypothetical protein	NA	NA	NA	NA
AXD71541.1\|2259507_2260785_+	hypothetical protein	A0A1J0MDX3	Mycobacterium_phage	1.9e-41	29.8
AXD71542.1\|2260774_2261458_+	hypothetical protein	A0A1J0ME72	Mycobacterium_phage	3.1e-19	32.2
AXD74403.1\|2261498_2261696_+	hypothetical protein	NA	NA	NA	NA
AXD71543.1\|2261708_2262698_+\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	2.1e-56	50.0
AXD71544.1\|2262666_2263992_+\|terminase	terminase	A0A0N7IRE3	Acinetobacter_phage	5.7e-187	72.6
AXD71545.1\|2263991_2265395_+	DUF4055 domain-containing protein	A0A1W6JNV0	Morganella_phage	8.3e-168	64.7
AXD71546.1\|2265378_2266494_+	hypothetical protein	I6PD76	Cronobacter_phage	9.6e-111	53.0
AXD71547.1\|2266583_2267297_+	hypothetical protein	I6PCW0	Cronobacter_phage	3.8e-44	53.8
AXD71548.1\|2267302_2268280_+	hypothetical protein	A0A1W6JNV5	Morganella_phage	1.7e-132	74.2
AXD71549.1\|2268323_2268812_+	hypothetical protein	G8C7P9	Escherichia_phage	3.3e-39	45.6
AXD71550.1\|2268814_2269198_+	hypothetical protein	NA	NA	NA	NA
AXD71551.1\|2269181_2269637_+	HK97 gp10 family phage protein	A0A0H5AWD5	Pseudomonas_phage	2.7e-19	36.9
AXD71552.1\|2269633_2270044_+	hypothetical protein	NA	NA	NA	NA
AXD71553.1\|2270048_2271026_+	hypothetical protein	A0A0A1IVS4	Pseudomonas_phage	9.8e-43	36.8
AXD71554.1\|2271032_2271434_+	hypothetical protein	A0A1B0Z0C9	Vibrio_phage	7.6e-18	37.3
AXD71555.1\|2271484_2271703_+	hypothetical protein	NA	NA	NA	NA
AXD71556.1\|2271703_2271994_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	4.0e-16	53.4
AXD71557.1\|2271986_2272295_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	9.3e-24	56.4
AXD71558.1\|2272357_2275471_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	1.4e-159	46.3
AXD71559.1\|2275529_2276381_-	hypothetical protein	A0A077KC96	Edwardsiella_phage	2.6e-15	61.0
AXD71560.1\|2276862_2277387_+	Ail/OmpX	A0A1B0VBR9	Salmonella_phage	5.5e-16	36.5
AXD71561.1\|2277421_2277988_+	hypothetical protein	NA	NA	NA	NA
AXD71562.1\|2278111_2278528_-	transcriptional regulator	NA	NA	NA	NA
AXD71563.1\|2278527_2278842_-	addiction module toxin RelE	NA	NA	NA	NA
AXD71564.1\|2278929_2279259_+\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	5.0e-23	46.3
AXD71565.1\|2279303_2279789_-	heme-binding protein	NA	NA	NA	NA
AXD71566.1\|2279951_2280389_+	hydroxyisourate hydrolase	NA	NA	NA	NA
AXD71567.1\|2280463_2280994_-	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	9.7e-45	51.7
AXD71568.1\|2281085_2281637_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.4e-62	65.9
AXD71569.1\|2281642_2282380_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.6e-112	75.1
AXD71570.1\|2282277_2283030_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.9e-70	59.3
AXD71571.1\|2283134_2286353_+	DUF1983 domain-containing protein	A0A0P0ZCI5	Stx2-converting_phage	5.9e-312	55.6
AXD71572.1\|2286362_2286719_+	hypothetical protein	NA	NA	NA	NA
AXD71573.1\|2286718_2287471_+	hypothetical protein	NA	NA	NA	NA
AXD71574.1\|2287493_2287928_-	hypothetical protein	Q7Y3V7	Yersinia_phage	5.1e-52	73.4
AXD71575.1\|2287958_2288141_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
AXD71576.1\|2288227_2289457_+	hypothetical protein	S5MDN9	Escherichia_phage	2.4e-14	46.2

DBSCAN-SWA_9

2416320 : 2421932

Enterobacteria_phage(33.33%)

lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD74409.1\|2416320_2416533_+\|lysis	lysis protein	H9C183	Pectobacterium_phage	1.9e-07	39.7
AXD74410.1\|2416516_2416870_+	lysozyme	M9P0E5	Enterobacteria_phage	2.4e-31	62.4
AXD74411.1\|2417011_2417086_+	hypothetical protein	NA	NA	NA	NA
AXD71706.1\|2417949_2418369_+	subtilase cytotoxin subunit B	NA	NA	NA	NA
AXD71707.1\|2418486_2418939_+	subtilase cytotoxin subunit B	NA	NA	NA	NA
AXD71708.1\|2418935_2419667_+	pertussis toxin-like subunit ArtA	A0A0U2KD26	Escherichia_phage	2.3e-60	52.0
AXD71709.1\|2419863_2420406_+	hypothetical protein	A0A0U2S643	Escherichia_phage	6.8e-70	65.4
AXD74412.1\|2420583_2420961_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	7.4e-15	38.2
AXD74413.1\|2421119_2421932_-	cytolethal distending toxin subunit B family protein	A5LH53	Enterobacteria_phage	2.7e-62	48.7

DBSCAN-SWA_10

2477582 : 2563043

Enterobacteria_phage(27.78%)

integrase,terminase,protease,portal,lysis,holin,head,capsid,tail,tRNA

attL 2476219:2476233|attR 2555892:2555906

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2476219:2476233	attL	NA	NA	NA	NA
AXD71756.1\|2477582_2478278_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
AXD71757.1\|2478349_2478931_+	hypothetical protein	NA	NA	NA	NA
AXD71758.1\|2478909_2479116_-	hypothetical protein	NA	NA	NA	NA
AXD74415.1\|2479135_2480821_+	long-chain-fatty-acid--CoA ligase FadD	A0A2H4PQM9	Staphylococcus_phage	3.8e-34	25.8
AXD71759.1\|2480893_2482021_+	ribonuclease D	NA	NA	NA	NA
AXD71760.1\|2482142_2482409_-	cell division topological specificity factor	NA	NA	NA	NA
AXD71761.1\|2482412_2483225_-	septum site-determining protein MinD	NA	NA	NA	NA
AXD71762.1\|2483248_2483956_-	septum site-determining protein MinC	NA	NA	NA	NA
AXD71763.1\|2484042_2484375_+	hypothetical protein	NA	NA	NA	NA
AXD74416.1\|2484424_2485084_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
AXD71764.1\|2485161_2485623_+	YcgN family cysteine cluster protein	NA	NA	NA	NA
AXD71765.1\|2485973_2486111_+	hypothetical protein	NA	NA	NA	NA
AXD71766.1\|2486324_2486498_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
AXD71767.1\|2486569_2486911_-	DUF1971 domain-containing protein	NA	NA	NA	NA
AXD71768.1\|2487101_2488091_-\|integrase	integrase	Q83VS6	Escherichia_phage	1.2e-101	54.8
AXD71769.1\|2488163_2488505_-	XRE family transcriptional regulator	Q1JS45	Enterobacteria_phage	2.0e-14	45.7
AXD71770.1\|2488617_2489136_+	transcriptional regulator	NA	NA	NA	NA
AXD71771.1\|2489247_2489682_-	hypothetical protein	NA	NA	NA	NA
AXD71772.1\|2490092_2490566_-	hypothetical protein	NA	NA	NA	NA
AXD71773.1\|2490650_2490845_+	hypothetical protein	NA	NA	NA	NA
AXD71774.1\|2490841_2491033_+	hypothetical protein	NA	NA	NA	NA
AXD71775.1\|2491037_2491622_+	hypothetical protein	NA	NA	NA	NA
AXD71776.1\|2491926_2492157_+	hypothetical protein	NA	NA	NA	NA
AXD71777.1\|2492157_2494329_+	hypothetical protein	V5UQJ3	Shigella_phage	3.1e-36	26.3
AXD71778.1\|2494325_2494721_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	4.1e-16	39.3
AXD71779.1\|2494717_2494960_+	hypothetical protein	NA	NA	NA	NA
AXD71780.1\|2495420_2495636_+	hypothetical protein	NA	NA	NA	NA
AXD71781.1\|2495635_2496109_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	4.6e-70	81.6
AXD74417.1\|2496466_2497510_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	1.2e-46	61.5
AXD71782.1\|2497657_2498446_+	hypothetical protein	A0A286S260	Klebsiella_phage	3.1e-31	37.1
AXD71783.1\|2498452_2499082_+	hypothetical protein	NA	NA	NA	NA
AXD71784.1\|2499078_2501010_+	replication endonuclease	F1BUS0	Erwinia_phage	7.5e-95	36.5
AXD71785.1\|2501134_2501434_+	hypothetical protein	Q8W639	Enterobacteria_phage	7.7e-07	32.9
AXD74418.1\|2501553_2502582_+	HNH nuclease	Q8SBE5	Shigella_phage	7.2e-52	36.6
AXD71786.1\|2502482_2503232_+	hypothetical protein	NA	NA	NA	NA
AXD71787.1\|2503374_2503716_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
AXD74419.1\|2503712_2503826_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
AXD71788.1\|2503858_2504341_+	cell envelope integrity protein TolA	NA	NA	NA	NA
AXD71789.1\|2506784_2507204_-	hypothetical protein	NA	NA	NA	NA
AXD71790.1\|2507613_2507895_+	DUF4406 domain-containing protein	A0A1I9KFD3	Aeromonas_phage	1.5e-23	63.1
AXD71791.1\|2507974_2508565_+	hypothetical protein	NA	NA	NA	NA
AXD71792.1\|2508545_2508743_-	hypothetical protein	NA	NA	NA	NA
AXD71793.1\|2508915_2509158_+	hypothetical protein	NA	NA	NA	NA
AXD71794.1\|2509241_2509580_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.8e-10	37.5
AXD71795.1\|2509576_2509993_+	structural protein	A0A0E3GMJ2	Enterobacteria_phage	8.7e-41	52.8
AXD71796.1\|2510222_2510687_+\|lysis	lysis protein	S4TNN7	Salmonella_phage	3.9e-58	75.3
AXD71797.1\|2510958_2511252_+	hypothetical protein	Q8W634	Enterobacteria_phage	1.6e-28	69.0
AXD71798.1\|2511320_2511674_+	HNH endonuclease	F1C587	Cronobacter_phage	2.2e-45	70.3
AXD71799.1\|2511876_2512341_+\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	2.6e-46	59.5
AXD71800.1\|2512294_2514034_+\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	1.0e-138	45.8
AXD74420.1\|2514039_2515365_+\|portal	phage portal protein	Q6JIM9	Burkholderia_virus	8.2e-117	50.5
AXD71801.1\|2515340_2516045_+\|head,protease	HK97 family phage prohead protease	Q6JIM8	Burkholderia_virus	8.0e-71	63.5
AXD71802.1\|2516054_2517281_+\|capsid	phage major capsid protein	Q6JIM7	Burkholderia_virus	1.6e-130	62.7
AXD71803.1\|2517345_2517708_+	hypothetical protein	NA	NA	NA	NA
AXD71804.1\|2517715_2518051_+\|head,tail	phage gp6-like head-tail connector protein	G3ENA1	Psychrobacter_phage	1.7e-07	31.8
AXD71805.1\|2518067_2518397_+	hypothetical protein	A0A1B5FP90	Escherichia_phage	1.1e-09	37.8
AXD71806.1\|2518386_2518917_+	hypothetical protein	NA	NA	NA	NA
AXD71807.1\|2518909_2519275_+	hypothetical protein	NA	NA	NA	NA
AXD71808.1\|2519267_2519996_+	hypothetical protein	NA	NA	NA	NA
AXD71809.1\|2520004_2520361_+	hypothetical protein	NA	NA	NA	NA
AXD71810.1\|2520575_2523056_+	hypothetical protein	A0A0E3GMH8	Enterobacteria_phage	1.1e-29	27.8
AXD71811.1\|2523061_2523391_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	3.8e-23	43.5
AXD71812.1\|2523550_2524687_+	porin	Q1MVN1	Enterobacteria_phage	2.3e-112	60.1
AXD71813.1\|2524828_2525380_+\|tail	phage minor tail protein L	Q687F1	Enterobacteria_phage	4.8e-63	68.2
AXD71814.1\|2525385_2526123_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	3.6e-114	76.8
AXD71815.1\|2526020_2526770_+\|tail	tail assembly protein	S5MDP1	Escherichia_phage	1.2e-61	63.5
AXD71816.1\|2526875_2530094_+	host specificity protein J	A5LH43	Enterobacteria_phage	4.5e-302	51.7
AXD71817.1\|2530103_2530460_+	hypothetical protein	NA	NA	NA	NA
AXD71818.1\|2530459_2531212_+	hypothetical protein	NA	NA	NA	NA
AXD71819.1\|2531405_2531558_+	type I toxin-antitoxin system hok family toxin	NA	NA	NA	NA
AXD71820.1\|2531682_2533785_+	hypothetical protein	A0A0P0ZGT8	Escherichia_phage	1.4e-22	54.7
AXD71821.1\|2533784_2534297_+	hypothetical protein	J9Q7Y6	Salmonella_phage	1.9e-13	37.7
AXD71822.1\|2534359_2534593_+	hypothetical protein	NA	NA	NA	NA
AXD71823.1\|2535009_2535588_+	hypothetical protein	Q9LA61	Enterobacterial_phage	3.1e-44	49.7
AXD71824.1\|2535711_2536065_+\|tail	phage tail protein	I1TQ41	Pseudomonas_phage	7.0e-15	39.8
AXD71825.1\|2537152_2537350_-	hypothetical protein	NA	NA	NA	NA
AXD71826.1\|2537687_2538167_-	heme-binding protein	NA	NA	NA	NA
AXD71827.1\|2538547_2539111_-	recombinase family protein	A0A1S6L009	Salmonella_phage	4.5e-64	67.2
AXD71828.1\|2539368_2541021_+	FliC/FljB family flagellin	NA	NA	NA	NA
AXD71829.1\|2541080_2541620_+	phase 1 flagellin transcriptional repressor	NA	NA	NA	NA
AXD71830.1\|2542414_2542945_-	disulfide bond formation protein DsbB	NA	NA	NA	NA
AXD71831.1\|2543086_2544631_-	Na(+)/H(+) antiporter NhaB	NA	NA	NA	NA
AXD71832.1\|2544849_2545569_+	fatty acid metabolism transcriptional regulator FadR	NA	NA	NA	NA
AXD71833.1\|2545615_2547148_-	SpoVR family protein	NA	NA	NA	NA
AXD71834.1\|2547470_2548769_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA
AXD71835.1\|2548782_2549853_+	alanine racemase	NA	NA	NA	NA
AXD71836.1\|2549916_2551650_-	potassium/proton antiporter	NA	NA	NA	NA
AXD71837.1\|2551745_2552660_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA
AXD71838.1\|2552898_2553510_+	membrane-bound lytic murein transglycosylase EmtA	NA	NA	NA	NA
AXD71839.1\|2553523_2554258_-	flagellar brake protein YcgR	NA	NA	NA	NA
AXD71840.1\|2554426_2554681_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
AXD71841.1\|2554743_2556456_-	alpha,alpha-trehalase	NA	NA	NA	NA
2555892:2555906	attR	NA	NA	NA	NA
AXD71842.1\|2556669_2557944_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA
AXD71843.1\|2558338_2558428_-	cytochrome bd-II oxidase subunit CbdX	NA	NA	NA	NA
AXD71844.1\|2558440_2559577_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
AXD71845.1\|2559588_2561133_-	cytochrome bd-II oxidase subunit 1	NA	NA	NA	NA
AXD71846.1\|2561207_2562056_-	hydrogenase expression/formation protein	NA	NA	NA	NA
AXD71847.1\|2562052_2562457_-	hydrogenase-1 operon protein HyaE	NA	NA	NA	NA
AXD71848.1\|2562446_2563043_-\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA

DBSCAN-SWA_11

3494858 : 3518373

Escherichia_phage(45.45%)

bacteriocin,terminase,portal,lysis,capsid,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD72648.1\|3494858_3495131_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
AXD72649.1\|3495132_3495561_-	hypothetical protein	G9L6M0	Escherichia_phage	5.4e-38	67.8
AXD72650.1\|3495573_3496230_-	hypothetical protein	Q08J74	Stx2-converting_phage	9.8e-55	56.3
AXD72651.1\|3496290_3496662_-	hypothetical protein	A0A088CC37	Shigella_phage	9.5e-47	73.1
AXD72652.1\|3496669_3497269_-	DUF4376 domain-containing protein	Q9LA61	Enterobacterial_phage	2.7e-35	41.7
AXD72653.1\|3497385_3497538_-	type I toxin-antitoxin system hok family toxin	NA	NA	NA	NA
AXD72654.1\|3497728_3499330_-	DUF1983 domain-containing protein	A0A2L1IV54	Escherichia_phage	4.7e-127	60.4
AXD72655.1\|3499326_3500958_-	hypothetical protein	A0A088CBK0	Shigella_phage	2.0e-202	64.3
AXD72656.1\|3501476_3501674_+	hypothetical protein	NA	NA	NA	NA
AXD72657.1\|3502761_3503115_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	1.2e-14	39.8
AXD72658.1\|3503238_3503817_-	hypothetical protein	Q9LA61	Enterobacterial_phage	1.3e-45	49.7
AXD72659.1\|3504233_3504467_-	hypothetical protein	NA	NA	NA	NA
AXD72660.1\|3504530_3505052_-	hypothetical protein	J9Q7Y6	Salmonella_phage	2.5e-13	34.6
AXD72661.1\|3505051_3507295_-	hypothetical protein	A0A2L1IV40	Escherichia_phage	7.5e-38	67.5
AXD72662.1\|3507291_3507945_-	hypothetical protein	Q08J85	Stx2-converting_phage	2.2e-78	64.7
AXD72663.1\|3507944_3508508_-	hypothetical protein	A0A2R2Z349	Escherichia_phage	8.2e-50	55.6
AXD72664.1\|3508491_3508944_-	hypothetical protein	A0A2R2Z354	Escherichia_phage	2.3e-34	59.2
AXD72665.1\|3509001_3509415_-	hypothetical protein	E7DYW8	Enterobacteria_phage	1.3e-28	56.6
AXD72666.1\|3509479_3510694_-\|capsid	N4-gp56 family major capsid protein	A0A2L1IV46	Escherichia_phage	4.6e-207	85.6
AXD72667.1\|3510747_3511737_-	hypothetical protein	A0A2L1IV47	Escherichia_phage	8.6e-79	52.5
AXD72668.1\|3511890_3514038_-\|portal	portal protein	A0A0P0ZG74	Escherichia_phage	3.6e-311	82.3
AXD72669.1\|3514037_3515750_-\|terminase	terminase	A0A2R2Z350	Escherichia_phage	3.5e-293	86.7
AXD72670.1\|3515730_3516558_-\|terminase	terminase	A0A2L1IV66	Escherichia_phage	9.4e-71	67.3
AXD72671.1\|3516903_3517392_-\|lysis	lysis protein	H6WRZ5	Salmonella_phage	1.8e-53	73.9
AXD72672.1\|3517621_3518038_-	structural protein	A0A0E3GMJ2	Enterobacteria_phage	5.1e-41	53.5
AXD72673.1\|3518034_3518373_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.8e-10	37.5

DBSCAN-SWA_12

3522356 : 3545123

Escherichia_phage(45.45%)

protease,integrase

attL 3514339:3514352|attR 3544172:3544185

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3514339:3514352	attL	NA	NA	NA	NA
AXD72678.1\|3522356_3522746_-	antitermination protein	A0A088CD47	Shigella_phage	2.4e-53	79.2
AXD72679.1\|3522748_3523045_-	hypothetical protein	K7P7Q1	Enterobacteria_phage	1.0e-35	76.6
AXD72680.1\|3523041_3523644_-	hypothetical protein	A0A0U2RT94	Escherichia_phage	2.3e-66	62.3
AXD72681.1\|3523707_3524286_-	Rha family transcriptional regulator	A0A0P0ZGC2	Escherichia_phage	3.1e-28	62.3
AXD72682.1\|3524908_3525310_+	DUF805 domain-containing protein	NA	NA	NA	NA
AXD72683.1\|3525337_3526072_-	hypothetical protein	A0A088CC21	Shigella_phage	3.6e-13	28.0
AXD72684.1\|3526071_3526521_-	hypothetical protein	A0A088CBI9	Shigella_phage	4.3e-09	28.5
AXD72685.1\|3526698_3526953_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
AXD74460.1\|3526952_3527372_+	VapC toxin family PIN domain ribonuclease	NA	NA	NA	NA
AXD72686.1\|3527422_3527626_-	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	1.6e-11	58.3
AXD72687.1\|3527739_3527976_-	hypothetical protein	A0A1B5FPG2	Escherichia_phage	1.1e-05	34.8
AXD72688.1\|3527989_3528328_-	hypothetical protein	NA	NA	NA	NA
AXD72689.1\|3528324_3529068_-	hypothetical protein	A0A0U2SAW4	Escherichia_phage	4.3e-14	30.8
AXD72690.1\|3529087_3529834_-	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	5.1e-84	67.2
AXD72691.1\|3530699_3531029_-	hypothetical protein	NA	NA	NA	NA
AXD72692.1\|3531116_3531569_-	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	1.9e-20	49.6
AXD72693.1\|3531565_3531829_-	transcriptional regulator	NA	NA	NA	NA
AXD74461.1\|3532269_3532659_+	XRE family transcriptional regulator	A0A1B5FPF4	Escherichia_phage	7.4e-10	49.1
AXD72694.1\|3533413_3534253_+	transcriptional regulator	K7PLX4	Enterobacteria_phage	3.8e-59	59.5
AXD72695.1\|3534277_3534496_+	cell division protein FtsZ	G8C7T2	Escherichia_phage	1.1e-13	50.7
AXD72696.1\|3534492_3534657_+	hypothetical protein	A0A0U2SHB5	Escherichia_phage	7.6e-17	77.4
AXD72697.1\|3534735_3535077_+	hypothetical protein	NA	NA	NA	NA
AXD72698.1\|3535219_3538324_+	DNA breaking-rejoining protein	H6WRX1	Salmonella_phage	1.1e-196	42.5
AXD72699.1\|3538336_3539431_+	enterohemolysin	K7P7N5	Enterobacteria_phage	8.1e-86	45.7
AXD72700.1\|3539464_3539770_+	DNA-binding protein	A0A222YXX1	Escherichia_phage	6.8e-27	62.9
AXD72701.1\|3539769_3539973_+	hypothetical protein	K7PLX1	Enterobacteria_phage	5.0e-10	50.8
AXD74462.1\|3540622_3541672_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	2.6e-57	68.1
AXD72702.1\|3541816_3542233_+	hypothetical protein	NA	NA	NA	NA
AXD72703.1\|3542313_3542562_+	DUF4224 domain-containing protein	NA	NA	NA	NA
AXD72704.1\|3542530_3543559_+\|integrase	integrase	A0A192Y7M7	Salmonella_phage	5.6e-81	50.0
AXD72705.1\|3543618_3543927_-	hypothetical protein	NA	NA	NA	NA
AXD72706.1\|3544463_3545123_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	1.2e-44	52.4
3544172:3544185	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP030220

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP030219

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection