CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP030196	Salmonella enterica strain SA20051401 chromosome, complete genome	3 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	1	20	7
CP030198	Salmonella enterica strain SA20051401 plasmid pSA20051401.2, complete sequence	0 crisprs	NA	0	0	0
CP030199	Salmonella enterica strain SA20051401 plasmid pSA20051401.3, complete sequence	0 crisprs	NA	0	0	0
CP030201	Salmonella enterica strain SA20051401 plasmid pSA20051401.5, complete sequence	0 crisprs	NA	0	0	0
CP030197	Salmonella enterica strain SA20051401 plasmid pSA20051401.1, complete sequence	0 crisprs	c2c9_V-U4	0	0	0
CP030200	Salmonella enterica strain SA20051401 plasmid pSA20051401.4, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP030196_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030196_2

640974-641222

Orphan

Consensus_repeat	Method
TTTTACAGGGCGACAGGATGAATGACTGTCCACGACACTATACCCAAAAGAAA	PILER-CR

2 spacers

The CRISPR arrays of CP030196_2

>merge|CP030196|2|640974-641222|PILER-CR
GATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACTTCTTCATAAAACCCGCTTCGGCGGGTTTTTGCTTTTACAGGGCGGCAGGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTCTTCATAAAACCCGTCAGTGTAAGCTGGCGGGTTTTTGCTTTTACCGGGCGACAGGATGAATGACTGTCCACGACGCTATACCCAAAAGAAA

>CP030196|2|1|640974-641222|PILER-CR
GATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACTTCTTCA	TAAAACCCGCTTCGGCGGGTTTTTGCTTTTACAGGGCGGCAGGATGAATGACTGTCCAC
GACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTCTTCATAAAA	CCCGTCAGTGTAAGCTGGCGGGTTTTTGCTTTTACCGGGCGACAGGATGAATGACTGTCCACG
ACGCTATACCCAAAAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP030196.1\|AXD31888.1\|639469_640615_+\|glycerate-2-kinase	unknown	unknown	gnl\|CDD\|182392
CP030196.1\|AXD31891.1\|643001_643991_+\|threonine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236317
CP030196.1\|AXD31885.1\|635584_637156_-\|galactarate-dehydratase	unknown	unknown	gnl\|CDD\|274491
CP030196.1\|AXD31886.1\|637685_638456_+\|5-keto-4-deoxy-D-glucarate-aldolase	unknown	unknown	gnl\|CDD\|182547
CP030196.1\|AXD31884.1\|634397_635345_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|238571
CP030196.1\|AXD31883.1\|633553_634387_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
CP030196.1\|AXD31893.1\|645409_646618_+\|propionate-kinase	unknown	unknown	gnl\|CDD\|183484
CP030196.1\|AXD31894.1\|646651_648946_+\|formate-C-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
CP030196.1\|AXD31881.1\|629986_631414_-\|PTS-fructose-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224218
CP030196.1\|AXD31898.1\|653476_653641_-\|hypothetical-protein	unknown	unknown	unknown
CP030196.1\|AXD31890.1\|641965_642904_+\|transcriptional-regulator-TdcA	unknown	unknown	gnl\|CDD\|182391
CP030196.1\|AXD31895.1\|649015_650380_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|185000
CP030196.1\|AXD31892.1\|644011_645343_+\|threonine/serine-transporter-TdcC	unknown	unknown	gnl\|CDD\|184191
CP030196.1\|AXD31896.1\|650696_652028_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273283
CP030196.1\|AXD31880.1\|629193_630000_-\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|227014
CP030196.1\|AXD31889.1\|641459_641711_-\|hypothetical-protein	unknown	unknown	unknown
CP030196.1\|AXD31882.1\|632365_633220_-\|tagatose-1,6-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|183710
CP030196.1\|AXD31887.1\|638481_639372_+\|2-hydroxy-3-oxopropionate-reductase	unknown	unknown	gnl\|CDD\|183197
CP030196.1\|AXD31897.1\|652053_653364_+\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
CP030196.1\|AXD35819.1\|631440_632355_-\|1-phosphofructokinase	unknown	unknown	gnl\|CDD\|274804

Protein	Function_ID	Function_description	E-value
CP030196.1\|AXD31888.1\|639469_640615_+\|glycerate-2-kinase	gnl\|CDD\|182392	PRK10342, PRK10342, glycerate kinase I; Provisional.	0
CP030196.1\|AXD31891.1\|643001_643991_+\|threonine-ammonia-lyase	gnl\|CDD\|236317	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB.	0
CP030196.1\|AXD31885.1\|635584_637156_-\|galactarate-dehydratase	gnl\|CDD\|274491	TIGR03248, galactar-dH20, galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0714).	0
CP030196.1\|AXD31886.1\|637685_638456_+\|5-keto-4-deoxy-D-glucarate-aldolase	gnl\|CDD\|182547	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional.	0
CP030196.1\|AXD31884.1\|634397_635345_+\|sugar-kinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	2.05908e-99
CP030196.1\|AXD31883.1\|633553_634387_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.54692e-55
CP030196.1\|AXD31893.1\|645409_646618_+\|propionate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	0
CP030196.1\|AXD31894.1\|646651_648946_+\|formate-C-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
CP030196.1\|AXD31881.1\|629986_631414_-\|PTS-fructose-transporter-subunit-IIC	gnl\|CDD\|224218	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism].	1.51855e-126
CP030196.1\|AXD31890.1\|641965_642904_+\|transcriptional-regulator-TdcA	gnl\|CDD\|182391	PRK10341, PRK10341, transcriptional regulator TdcA.	0
CP030196.1\|AXD31895.1\|649015_650380_+\|L-serine-ammonia-lyase	gnl\|CDD\|185000	PRK15040, PRK15040, L-serine ammonia-lyase.	0
CP030196.1\|AXD31892.1\|644011_645343_+\|threonine/serine-transporter-TdcC	gnl\|CDD\|184191	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional.	0
CP030196.1\|AXD31896.1\|650696_652028_+\|hypothetical-protein	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	3.37807e-164
CP030196.1\|AXD31880.1\|629193_630000_-\|HPr-family-phosphocarrier-protein	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	3.31642e-66
CP030196.1\|AXD31897.1\|652053_653364_+\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	0
CP030196.1\|AXD31882.1\|632365_633220_-\|tagatose-1,6-bisphosphate-aldolase	gnl\|CDD\|183710	PRK12737, gatY, tagatose-bisphosphate aldolase subunit GatY.	0
CP030196.1\|AXD31887.1\|638481_639372_+\|2-hydroxy-3-oxopropionate-reductase	gnl\|CDD\|183197	PRK11559, garR, tartronate semialdehyde reductase; Provisional.	0
CP030196.1\|AXD35819.1\|631440_632355_-\|1-phosphofructokinase	gnl\|CDD\|274804	TIGR03828, pfkB, 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).	7.64417e-130

>CP030196.1|AXD31888.1|639469_640615_+|glycerate-2-kinase
MKIVIAPDSYKESLSAAEVAQAIEKGFREIFPDAQYVSVPVADGGEGTVEAMIAATQGVERAAWVTGPLGEKVKACWGMSGDGKTAFIEMAAASGLALVPPEKRNPLITTSRGTGELILQALESGASNIIIGIGGSATNDGGAGMMQALGAKLRDANGADIGYGGGSLHCLSDIDISELDPRLKLCAIRVACDVSNPLIGDNGASRIFGPQKGATEENIVELDRNLAHYADIIKKSLNVDVKAAPGAGAAGGMGAALMAFLGAELRSGIEIVTAALNLEEHIHDCTLVVTGEGRIDSQSIRGKVPIGVANVAKKYHKPVIGIAGSLTHDVGIVHHYGIDAVFSVLTRIVTLEEAFRGAFDNIYRASRNVAAALAIGMRSAG
>CP030196.1|AXD31887.1|638481_639372_+|2-hydroxy-3-oxopropionate-reductase
MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKLAKVEVTR
>CP030196.1|AXD31886.1|637685_638456_+|5-keto-4-deoxy-D-glucarate-aldolase
MNNAIFPNKFKAALAAQQVQIGCWSALASPITTEVLGLAGFDWLVLDGEHAPNDVTTLIPQLMALKGSASAPVVRVPTNEPVIIKRMLDIGFYNFLIPFVETQEEAARAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITIIVQIESQLGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQQTIQHIFARAKAHGKPCGILAPVEADARRYLEWGATFVAVGSDLGAFRASTQKLADTFKK
>CP030196.1|AXD31885.1|635584_637156_-|galactarate-dehydratase
MANIEIRQESPSAFYIKVHETDNVAIIVNDHGLKAGTRFPDGLELTEHIPQGHKVALTDIPAHGEIIRYGEVIGYAVRDIPRGSWIDESLVELPKAPPLNTLPLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKVIERDLLPKYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNIALNPNFGGEVMVIGLGCEKLQPERLLEGTEDVPAIAVESASIVRLQDEQHVGFKSMVDDILRVAERHLTKLNQRQRETCPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAINEAVGKRLLDEMAWYDNYLDMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWYDLMDINAGTIATGEETIEDVGWKLFHFILDVASGRKKTFSDQWGLHNQLAVFNPAPVT
>CP030196.1|AXD31884.1|634397_635345_+|sugar-kinase
MNITIATLGELLVEFLAKKENQGFSSPGEFWGPYPSGAPAIFADQVAKLGFRSLLFSCVGNDAFGVMNITRLSRDGVNVQGISVLPNATTGSAFVSYRSQAQRDFIFNMPDSACGLLSADHLDETLLRQYRHFHIMGSSLFSFRLIDAVRKAISIVKENGGTISFDPNIRKEMLKIREMSQAFEYILDYTDFFLPSDGELDYFGLSKSRDEEKIVARLHKRGIAHVIIKRGARGASYYSKDEQHHVAGYPVKVVDPTGAGDCFGATFVSLFLAGYSVPDALAHANAAGSLAISARGPMEGTSTLAQIKELMRQQN
>CP030196.1|AXD31883.1|633553_634387_+|DeoR/GlpR-transcriptional-regulator
MAKPSTSLLKRRLDIAEIVRKNGEIKVDDLAEMLSVSGVTIRNDLNYLEQQGYLKRSFGGAIYTAQPVRAAVSHEVVQSQALEHSVELELAKQVARLVCDDDTVFLGAGEVLRKALPFLGDYRDLCLIINDLSHVAPARDYIDGEIVLLGGVLGRSGQALGGEIAIQSLQQFQPSCCLVMVDHISEDGTLNVKNESAAALLSECLRLSGQSIAVVAQRPIHDVARYPVGKLNTLSAIITPQIVAAEYHSRFLADGLTNSYTNNECLTWINPTLHQAR
>CP030196.1|AXD31882.1|632365_633220_-|tagatose-1,6-bisphosphate-aldolase
MFIISSKNMLQKAQHAGYAVPAFNIHNLETLQVVVETAAEMRSPLIVAGTPGTFSYAGMGNIVAIAGDLAREYNLPLAIHLDHHESLADIESKVMAGIRSVMIDGSHFPFEENVALVKSVVDFCHRYDTSVEAELGRLGGIEDDLVVDSKDALYTNPQQAREFVARTGIDSLAVAIGTAHGMYAAEPKLDFERLAEIRALVDIPLVLHGASGLPESDIRQAISLGVCKVNVATELKIAFSDALKEYFLQNPKANDPRHYMQPAKQAMKEVVRKVIHVCGCEGQL
>CP030196.1|AXD35819.1|631440_632355_-|1-phosphofructokinase
MIYTLTLNSAIDMNIFSDPLQPNIVNRTHHTEFCPNGKGVNVALVLDHFQIPAHILGIFGGFTGHYIVESLRTRKMPVTPAWVEEPTRINIFIHDGQQEYKLVNPGSYIPDECKQQIITIISQLPDAEYLVISGSLPQGIESRFYAEIMHICQQKNIGVILDISHPSLRQLLEFKPLLIKPNDEEVKAIFGLTVSDDNDAKNTLTTLHALGAQNVLLTLGAKGMYFSNGIDYWFCSAPTVDLVSSACAGDAALAAFLSQWLSTGEVEYALSLASATGADVASSAGLGQLAAIETLLSQIHVRKL
>CP030196.1|AXD31881.1|629986_631414_-|PTS-fructose-transporter-subunit-IIC
MKKIIAVTGCPTGIAHTFMAEEALKNAAKKLSVEIKVETNGASGVENAIQPADLVDIAGVIIAADKDVLPDRFNGLPVIEVPVKEAIHHPAELINKVINGEAPIRKGESTTSTEIIEKESLGRQIYKHLMSGVSNMLPFVVAGGILIAVSFLWGIYSADPNSAEYNATAAMLMKIGQQAFSIMVPVFTAYIAFSISGRPGMVAGFVGGLLANATGAGFLGGIIAGFAAGYLMLWVKNRLEGLPRQYEGLKSIFIMPLIGVLVIGVLMSLLGQPVAAINNSMMNWLASLQEANPILLGIVVGAMCSFDFGGPVNKAAYVTGTLLLGQGNFYFMAGVSAACITPPLVIALATTFFPKGFSEEERAAGMVNYILGCTHITEGAIPFAAKDPLRVIPMMMIASSISAVLSYSLRIQVPAPHGGFLILPLVSQPLAWVLCILAGSACGAVMLGLWRLWAVRKNSVNTTPVAKAGGQNAAL
>CP030196.1|AXD31880.1|629193_630000_-|HPr-family-phosphocarrier-protein
MQLCEHDIFISDERLDKVTALHRVVEKLSAAGNTTTDYLRGMLDREAQISTYLGNGIAIPHGTPESRDAVLQTGVKVIVFRHGVDWGDGNTAYLVTGIAARSNEHLEILRQLTRVLSDDAILQALAKAESPSQVLALLTGSTTNAPAAVELQEGEQATFVIHNPHGLHARPSAVLVKFIKQFQSHITVENLDSASGPVDGKNLMRVVSLGAKKGHRLLFRAQGEDAQQALREIGELIASGAGEMITVPVTPPPEVMQPKRSWLSRLFN
>CP030196.1|AXD31889.1|641459_641711_-|hypothetical-protein
MKTIFQSITGHFIGNFSVKFKAQFLKFKYKPKVNALKNRYASHFFTLFVCKETFNKILTKIFHTFNFHLQQIIYTAFLLFFRM
>CP030196.1|AXD31890.1|641965_642904_+|transcriptional-regulator-TdcA
MNTLVLPKTQHLVVFQEVIRSGSIGSAAKSLGLTQPAVSKIISDVEAYFGVELIVRKNTGVTLTEAGQVLLSWSESITREMKNMINEMNSMTCNTVVDVSFGFPSLIGFTFMSDMIHKFKEVFPKAQVSMYEAQLSSFLPALRDGRLDFAIGTLSNEMQLQDLHVEPLFESEFVLVASKSRTCTGTITLESLKDEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTTPFGSNQFITIPIKDTLPVARYAAVWSKNYRIKKAASVLVELAKQYSSYNGCRRRQLIEIE
>CP030196.1|AXD31891.1|643001_643991_+|threonine-ammonia-lyase
MHITYDLPVAIEDILEAKKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKDAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVETEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVHGMAASYYAGEITAHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVITEGAGALACAALLSGKLDSHIQNRKTVSIISGGNIDLSRVSQITGLVDA
>CP030196.1|AXD31892.1|644011_645343_+|threonine/serine-transporter-TdcC
MSTTDSIVSSQAKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLQMPALNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLSNIALTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKEFGREFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMADAKAQNIPVLSYLANHFASLSGTKSTFATVLEYGASIIALVAIFKSFFGHYLGTLEGLNGLVLKFGYKGDKTKVSMGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTLIGLLTILNIVYKLF
>CP030196.1|AXD31893.1|645409_646618_+|propionate-kinase
MNEFPVVLVINCGSSSIKFSVLDVATCDVLMAGIADGMNTENAFLSINGDKPINLAHSNYEDALKAIAFELEKRDLTDSVALIGHRIAHGGELFTQSVIITDEIIDNIRRVSPLAPLHNYANLSGIDAARRLFPAVRQVAVFDTSFHQTLAPEAYLYGLPWEYFSSLGVRRYGFHGTSHRYVSRRAYELLDLDEKNSGLIVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMAWIAKETGQTLSDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERARLAIKTFVHRIARHIAGHAASLHRLDGIIFTGGIGENSVLIRQLVIEHLGVLGLTLDVEMNKQPNSHGERIISANPSQVICAVIPTNEEKMIALDAIHLGNVKAPVEFA
>CP030196.1|AXD31894.1|646651_648946_+|formate-C-acetyltransferase
MKVNIDTSDMLYAEAWRDFKGTDWKEEINVRDFIQHNYTPYEGDESFLADATPATTALWEKVMAGIRIENATHAPVDFDTNIATTITAHDAGYIEKELEKIVGLQTDKPLKRALHPFGGVNMIKSSFHAYGREMDADFEYTFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGIRYLVRERELQFADLQSNLEQGQNLEATIRLREELAEHRRALLQMQEMAAKYGYDISRPARNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFNAGLLTEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEALPVAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLTDEVLDYDAVMESLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVAADSLSAIRYAQVKPIRDENGLAIDFAIEGEYPQYGNNDERVDSIACDLVKRFMQKISVLPTYRNAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKEDAVRKTNLVGLLDGYFHHEAQVEGGQHLNVNVMNREMLLDAIEHPENYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAM
>CP030196.1|AXD31895.1|649015_650380_+|L-serine-ammonia-lyase
MISAFDIFKIGIGPSSSHTVGPMNAGKCFIDRLIDSGDLPRTTRITVDLYGSLSLTGKGHATDTAIIMGLAGNTPQDVNIDSIPAFIQEVARSSRLSVAGGAHVVDFPVADSILFHAETLARHENGMRITAWHGQTPLLHKTYYSIGGGFIVEEERFGQSHDVEKSVPYDFHSASELLTLCERQGLSVSGLMMQNELALRSKEQIDAGFARIWQVMATGIERGMNTEGVLPGPLNVPRRAVALRRLLVSSDNLSRDPMNVIDWINMFALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNANSIARYLLSAGAIGMLYKMNASISGAEVGCQGEVGVACSMAAAGLTELLGGSPAQVCIAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMALRRTSEPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG
>CP030196.1|AXD31896.1|650696_652028_+|hypothetical-protein
MESASNTSVILDASAPARRAGMTESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSIIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNIGALPPMALLIKNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGVLFVTVFFYAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAGWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKIKENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGASLYLIIITGLLLCVSPFLAFS
>CP030196.1|AXD31897.1|652053_653364_+|serine-dehydratase-subunit-alpha-family-protein
MFESKINPLWQSFILAVQEEVKPALGCTEPISLALAAAAAAAELDGTVERIDAWVSPNLMKNGMGVTVPGTGMVGLPIAAALGALGGDAKAGLEVLKDASAKAVADAKAMLAAGHVAVMLQEPCNDILFSRAKVYSGDSWACVTIVGDHTNIVRIETDKGVVFTQADNAQEEEKTSPLGVLSHTSLEEILAFVNAVPFDAIRFILDAARLNGALSQEGLRGSWGLHIGSTLAKQCDRGLLAKDLSTAILIRTSAASDARMGGATLPAMSNSGSGNQGITATVPVMVVAEHVGADDERLARALMLSHLSAIYIHHQLPRLSALCAATTAAMGAAAGMAWLIDGRYDTIAMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHNVEQSIANLCSLACRSMQQTDKQIIEIMASKAH
>CP030196.1|AXD31898.1|653476_653641_-|hypothetical-protein
MSKKSAKKRQPVVKPAVQETMSATVSLGYEEMLTELEAIVADAEARLAEEEAAA

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Crispr_ID: CP030196_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030196_3

1002635-1003823

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

19 spacers

cas3

The CRISPR arrays of CP030196_3

>merge|CP030196|3|1002635-1003823|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGCTTAGCCGATCCTGATGACCCGGCCAGAAAGGTGTTCCCCGCGCCAGCGGGGATAAACCCGTTGCTCAAAAAACTGAACGAGGGTAACTACCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGGAGAATTATATATCGGAATGTTACAGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCATCGAACCGCTTATCCGTCTGTACCCACTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTATTCAGCTCTTGCCGCAATATGCCGCTCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGCATCAGCGCCGATCCGTTCATAGTGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAACAGAAGAACGGCAAGCGGCACCTCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCCGTCAGGTTGGATCGGATGGCATTCCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTTCATTGCGCAGGGTATGCAGTCGGTTTCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCCGATAGCGACGCTTCTGTAGTCACTGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGCGTGTTCCCCGCGCCAGCGGGGATAAGCCGCGTCACTTTCTGACATTTTATTCAGTTCGTTAGTGTTCCCCGTGCCAGCGGGGATAAACCGTCATTTCTGGACGGGGCTGTGTGACGAATACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTCCAATTAACCCAAACTTTGCGCGCTTAATATGTTCCCCGCGCTAGCGGGGATAAACCGGGATATGTGAAGTTCAGGTAGCCCATTACGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGATCGAGAGTGCGAAGAGGCAGAACGGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGTTATGCGCAAAAATTAATTCATATTATAGTGTTCCCCGCGCCAGCAGGGATAAACCGGACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTCATCGGCAGCGTCACGCAATATGAAGATGTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP030196|3|2|1002635-1003762|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTAGCCGATCCTGATGACCCGGCCAGAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCC	GTTGCTCAAAAAACTGAACGAGGGTAACTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGAGAATTATATATCGGAATGTTACAGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATCGAACCGCTTATCCGTCTGTACCCACTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTATTCAGCTCTTGCCGCAATATGCCGCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGTCAGGTTGGATCGGATGGCATTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	CGTCACTTTCTGACATTTTATTCAGTTCGTTA
GTGTTCCCCGTGCCAGCGGGGATAAACCG	TCATTTCTGGACGGGGCTGTGTGACGAATACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
ATGTTCCCCGCGCTAGCGGGGATAAACCG	GGATATGTGAAGTTCAGGTAGCCCATTACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP030196|3|2|1002635-1003823|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTAGCCGATCCTGATGACCCGGCCAGAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCC	GTTGCTCAAAAAACTGAACGAGGGTAACTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGAGAATTATATATCGGAATGTTACAGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATCGAACCGCTTATCCGTCTGTACCCACTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTATTCAGCTCTTGCCGCAATATGCCGCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGTCAGGTTGGATCGGATGGCATTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	CGTCACTTTCTGACATTTTATTCAGTTCGTTA
GTGTTCCCCGTGCCAGCGGGGATAAACCG	TCATTTCTGGACGGGGCTGTGTGACGAATACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
ATGTTCCCCGCGCTAGCGGGGATAAACCG	GGATATGTGAAGTTCAGGTAGCCCATTACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP030196|3|1|1002635-1003823|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTAGCCGATCCTGATGACCCGGCCAGAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCC	GTTGCTCAAAAAACTGAACGAGGGTAACTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGAGAATTATATATCGGAATGTTACAGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATCGAACCGCTTATCCGTCTGTACCCACTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTATTCAGCTCTTGCCGCAATATGCCGCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGTCAGGTTGGATCGGATGGCATTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	CGTCACTTTCTGACATTTTATTCAGTTCGTTA
GTGTTCCCCGTGCCAGCGGGGATAAACCG	TCATTTCTGGACGGGGCTGTGTGACGAATACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
ATGTTCCCCGCGCTAGCGGGGATAAACCG	GGATATGTGAAGTTCAGGTAGCCCATTACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP030196.1\|AXD32245.1\|1003920_1004718_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP030196.1\|AXD32248.1\|1007390_1009103_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP030196.1\|AXD32247.1\|1005591_1007391_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP030196.1\|AXD32240.1\|996420_996717_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
CP030196.1\|AXD32243.1\|1000232_1001531_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP030196.1\|AXD32250.1\|1009827_1010070_-\|hypothetical-protein	unknown	unknown	unknown
CP030196.1\|AXD32236.1\|989618_992375_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
CP030196.1\|AXD32238.1\|993779_996014_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
CP030196.1\|AXD32237.1\|992432_993728_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP030196.1\|AXD32235.1\|988432_989575_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
CP030196.1\|AXD32242.1\|998512_1000150_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP030196.1\|AXD32249.1\|1009204_1009939_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP030196.1\|AXD32244.1\|1001666_1002338_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP030196.1\|AXD32251.1\|1010151_1011105_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP030196.1\|AXD32246.1\|1004805_1005168_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP030196.1\|AXD32252.1\|1011547_1014208_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP030196.1\|AXD35835.1\|1009059_1009278_-\|hypothetical-protein	unknown	unknown	unknown
CP030196.1\|AXD32239.1\|996098_996455_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
CP030196.1\|AXD35834.1\|1005096_1005267_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP030196.1\|AXD32241.1\|997484_998285_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569

Protein	Function_ID	Function_description	E-value
CP030196.1\|AXD32245.1\|1003920_1004718_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.62876e-101
CP030196.1\|AXD32248.1\|1007390_1009103_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP030196.1\|AXD32247.1\|1005591_1007391_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP030196.1\|AXD32240.1\|996420_996717_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	3.34398e-13
CP030196.1\|AXD32243.1\|1000232_1001531_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP030196.1\|AXD32236.1\|989618_992375_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP030196.1\|AXD32238.1\|993779_996014_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP030196.1\|AXD32237.1\|992432_993728_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP030196.1\|AXD32235.1\|988432_989575_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
CP030196.1\|AXD32242.1\|998512_1000150_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP030196.1\|AXD32249.1\|1009204_1009939_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	6.53428e-139
CP030196.1\|AXD32244.1\|1001666_1002338_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
CP030196.1\|AXD32251.1\|1010151_1011105_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP030196.1\|AXD32246.1\|1004805_1005168_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP030196.1\|AXD32252.1\|1011547_1014208_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP030196.1\|AXD32239.1\|996098_996455_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	1.00464e-19
CP030196.1\|AXD32241.1\|997484_998285_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158

>CP030196.1|AXD32244.1|1001666_1002338_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP030196.1|AXD32243.1|1000232_1001531_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP030196.1|AXD32242.1|998512_1000150_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP030196.1|AXD32241.1|997484_998285_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP030196.1|AXD32240.1|996420_996717_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRTVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>CP030196.1|AXD32239.1|996098_996455_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFQVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>CP030196.1|AXD32238.1|993779_996014_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>CP030196.1|AXD32237.1|992432_993728_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLECFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>CP030196.1|AXD32236.1|989618_992375_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>CP030196.1|AXD32235.1|988432_989575_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>CP030196.1|AXD32245.1|1003920_1004718_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSREVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP030196.1|AXD32246.1|1004805_1005168_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP030196.1|AXD35834.1|1005096_1005267_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGY
>CP030196.1|AXD32247.1|1005591_1007391_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP030196.1|AXD32248.1|1007390_1009103_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAELGLVGKAPGRYNVHLGGNRMGTRIPRMYRENITESEILDSVDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP030196.1|AXD35835.1|1009059_1009278_-|hypothetical-protein
MVSANASTRSTFGSSFRAFRSSLDISSSRYTLPDGASLIRPTRAVGRIRHLCRHPAIQVIPRNHALDRAPGE
>CP030196.1|AXD32249.1|1009204_1009939_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRATLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP030196.1|AXD32250.1|1009827_1010070_-|hypothetical-protein
MLLGTHSLAAFKQLELFWVYNQFKIRLPAGFFIAASIIIPRKDNYPSCSPHSRFSPKNRVSSSAIPGSHLRVVCVSPTDR
>CP030196.1|AXD32251.1|1010151_1011105_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>CP030196.1|AXD32252.1|1011547_1014208_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFERLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSATEGLTGKME

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Crispr_ID: CP030196_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030196_4

1020577-1021764

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR

19 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP030196_4

>merge|CP030196|4|1020577-1021764|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGTTGGCGTCGCTGCGTACTGGTTAACGTGGTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGACGCAATCTGAATATTTGCCCCATTGCCTTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACTATCAGAAGATCGCGCAGAACTGGCGTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGTACCCAACATCTGGAACATTTTCCCGCACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGATCTGTATCCCCTGCAATAGCGGTCACATGGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCGGTCAGGGGAACAGCATAACAATTCCGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAACTGACGGGTAAAGCGGCGGTATTCGGTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGATGTATGCGACTGACCTGGGGTTGCCGACGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTATTGCGCTGTCGGCGCAGGAATACCGCGATGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGTCTGGTGTGGCGCGACGGACGCGGCGAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGATTTAAATGATCCACACAATTACGTTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCACCCGATTAAACAAGAGGAGCGCGGAAATGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTCATCAATACCAAGTTGGGCCATTTTCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTTCACCAGGTAGAGTTGCCACCGCTGCCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGAAACGTGGCCCCGTGTGTGTTTTGGTTCGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTACTGAAACGGATAAAAAATAATCAGGGGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTGAGCTGGCGTCATTGCCCGCCCCGGCGATGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCAACTATCCATGCAAATATTTCCATTGCTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGCACTGGCTGGAGTGGCTGGCGAAAAATCGTGTTCCCCGCGTCAGCGGGGATAAACAC

>CP030196|4|3|1020577-1020971|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGCGTCGCTGCGTACTGGTTAACGTGGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCAATCTGAATATTTGCCCCATTGCCTTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTATCAGAAGATCGCGCAGAACTGGCGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTACCCAACATCTGGAACATTTTCCCGCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATCTGTATCCCCTGCAATAGCGGTCACATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGGTCAGGGGAACAGCATAACAATTCCGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCGGAACTGACGGGTAAAGCGGCGGTATTCGGTGAGTGTTCCCCGCGCCAGCGGGGATAAACC	GATGTATGCGACTGACCTGGGGTTGCCGACGTT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGTATTGCGCTGTCGGCGCAGGAATACCGCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCTGGTCTGGTGTGGCGCGACGGACGCGGCGAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGAGATTTAAATGATCCACACAATTACGTTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCTCACCCGATTAAACAAGAGGAGCGCGGAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTTTCATCAATACCAAGTTGGGCCATTTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGTTTCACCAGGTAGAGTTGCCACCGCTGCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTGAAACGTGGCCCCGTGTGTGTTTTGGTTCGT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTACTGAAACGGATAAAAAATAATCAGGGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGCAACTATCCATGCAAATATTTCCATTGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCAGCACTGGCTGGAGTGGCTGGCGAAAAATC


>CP030196|4|3|1020577-1021764|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGCGTCGCTGCGTACTGGTTAACGTGGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCAATCTGAATATTTGCCCCATTGCCTTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTATCAGAAGATCGCGCAGAACTGGCGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTACCCAACATCTGGAACATTTTCCCGCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATCTGTATCCCCTGCAATAGCGGTCACATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGGTCAGGGGAACAGCATAACAATTCCGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAACTGACGGGTAAAGCGGCGGTATTCGGTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGTATGCGACTGACCTGGGGTTGCCGACGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTATTGCGCTGTCGGCGCAGGAATACCGCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGTCTGGTGTGGCGCGACGGACGCGGCGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGATTTAAATGATCCACACAATTACGTTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCACCCGATTAAACAAGAGGAGCGCGGAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTCATCAATACCAAGTTGGGCCATTTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTCACCAGGTAGAGTTGCCACCGCTGCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAAACGTGGCCCCGTGTGTGTTTTGGTTCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTACTGAAACGGATAAAAAATAATCAGGGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAACTATCCATGCAAATATTTCCATTGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC
GTGTTCCCCGCGTCAGCGGGGATAAACAC

>CP030196|4|2|1020577-1021764|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGCGTCGCTGCGTACTGGTTAACGTGGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCAATCTGAATATTTGCCCCATTGCCTTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTATCAGAAGATCGCGCAGAACTGGCGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTACCCAACATCTGGAACATTTTCCCGCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATCTGTATCCCCTGCAATAGCGGTCACATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGGTCAGGGGAACAGCATAACAATTCCGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAACTGACGGGTAAAGCGGCGGTATTCGGTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGTATGCGACTGACCTGGGGTTGCCGACGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTATTGCGCTGTCGGCGCAGGAATACCGCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGTCTGGTGTGGCGCGACGGACGCGGCGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGATTTAAATGATCCACACAATTACGTTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCACCCGATTAAACAAGAGGAGCGCGGAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTCATCAATACCAAGTTGGGCCATTTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTCACCAGGTAGAGTTGCCACCGCTGCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAAACGTGGCCCCGTGTGTGTTTTGGTTCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTACTGAAACGGATAAAAAATAATCAGGGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAACTATCCATGCAAATATTTCCATTGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC
GTGTTCCCCGCGTCAGCGGGGATAAACAC

>CP030196|4|4|1021004-1021763|PILER-CR
	TTGGCGTCGCTGCGTACTGGTTAACGTGGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCAATCTGAATATTTGCCCCATTGCCTTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTATCAGAAGATCGCGCAGAACTGGCGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTACCCAACATCTGGAACATTTTCCCGCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATCTGTATCCCCTGCAATAGCGGTCACATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGGTCAGGGGAACAGCATAACAATTCCGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCGGAACTGACGGGTAAAGCGGCGGTATTCGGTGAGTGTTCCCCGCGCCAGCGGGGATAAACC	GATGTATGCGACTGACCTGGGGTTGCCGACGTT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGTATTGCGCTGTCGGCGCAGGAATACCGCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCTGGTCTGGTGTGGCGCGACGGACGCGGCGAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGAGATTTAAATGATCCACACAATTACGTTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCTCACCCGATTAAACAAGAGGAGCGCGGAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTTTCATCAATACCAAGTTGGGCCATTTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGTTTCACCAGGTAGAGTTGCCACCGCTGCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTGAAACGTGGCCCCGTGTGTGTTTTGGTTCGT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTACTGAAACGGATAAAAAATAATCAGGGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGCAACTATCCATGCAAATATTTCCATTGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCAGCACTGGCTGGAGTGGCTGGCGAAAAATC
GTGTTCCCCGCGTCAGCGGGGATAAACA

Protein	Signature genes	Signature genes Name	Protein_function
CP030196.1\|AXD32267.1\|1027629_1028109_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP030196.1\|AXD32257.1\|1018619_1019270_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP030196.1\|AXD32259.1\|1020186_1020480_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
CP030196.1\|AXD32269.1\|1029135_1029897_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP030196.1\|AXD32254.1\|1016254_1016809_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP030196.1\|AXD32255.1\|1016822_1017881_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP030196.1\|AXD32266.1\|1026919_1027630_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP030196.1\|AXD32256.1\|1017891_1018638_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP030196.1\|AXD32260.1\|1021778_1022825_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP030196.1\|AXD32265.1\|1026589_1026901_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP030196.1\|AXD32261.1\|1023075_1023984_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP030196.1\|AXD32262.1\|1023993_1025433_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP030196.1\|AXD32258.1\|1019266_1020187_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP030196.1\|AXD32268.1\|1028105_1029155_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP030196.1\|AXD32252.1\|1011547_1014208_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP030196.1\|AXD32263.1\|1025419_1026025_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP030196.1\|AXD32253.1\|1014701_1016258_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP030196.1\|AXD32264.1\|1026042_1026399_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP030196.1\|AXD32251.1\|1010151_1011105_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP030196.1\|AXD32250.1\|1009827_1010070_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP030196.1\|AXD32267.1\|1027629_1028109_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP030196.1\|AXD32257.1\|1018619_1019270_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	2.67233e-75
CP030196.1\|AXD32259.1\|1020186_1020480_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.3037e-64
CP030196.1\|AXD32269.1\|1029135_1029897_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP030196.1\|AXD32254.1\|1016254_1016809_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.23476e-33
CP030196.1\|AXD32255.1\|1016822_1017881_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.72048e-138
CP030196.1\|AXD32256.1\|1017891_1018638_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.97108e-47
CP030196.1\|AXD32260.1\|1021778_1022825_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP030196.1\|AXD32265.1\|1026589_1026901_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	3.61312e-65
CP030196.1\|AXD32261.1\|1023075_1023984_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP030196.1\|AXD32262.1\|1023993_1025433_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP030196.1\|AXD32258.1\|1019266_1020187_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	9.54577e-157
CP030196.1\|AXD32268.1\|1028105_1029155_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP030196.1\|AXD32252.1\|1011547_1014208_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP030196.1\|AXD32263.1\|1025419_1026025_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP030196.1\|AXD32253.1\|1014701_1016258_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP030196.1\|AXD32264.1\|1026042_1026399_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP030196.1\|AXD32251.1\|1010151_1011105_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP030196.1\|AXD32266.1\|1026919_1027630_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	7.75163e-119

>CP030196.1|AXD32259.1|1020186_1020480_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGCGNAVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP030196.1|AXD32258.1|1019266_1020187_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLINKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP030196.1|AXD32257.1|1018619_1019270_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVECGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPMLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLRETSVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>CP030196.1|AXD32256.1|1017891_1018638_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYRLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLEGSAADVLREAYRWYQDQFNALKLPLPGLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP030196.1|AXD32255.1|1016822_1017881_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILIESGIDAKKAVEYVEKIANCFGKVKAEKKPKDELTNAETEQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLANKPDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>CP030196.1|AXD32254.1|1016254_1016809_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKADWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKTPDELLRQLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLSHHRRQQRPTEFLRIRWALEYYQAGDTDNEQD
>CP030196.1|AXD32253.1|1014701_1016258_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MFPINLLTTPWLSVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEPLTGEKVSMASLLPETPGAQTTKFNKDHFIKRGVTERFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAQVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANKEYPALVVNVFNARRLRDVKAGLWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>CP030196.1|AXD32252.1|1011547_1014208_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFERLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSATEGLTGKME
>CP030196.1|AXD32251.1|1010151_1011105_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>CP030196.1|AXD32250.1|1009827_1010070_-|hypothetical-protein
MLLGTHSLAAFKQLELFWVYNQFKIRLPAGFFIAASIIIPRKDNYPSCSPHSRFSPKNRVSSSAIPGSHLRVVCVSPTDR
>CP030196.1|AXD32260.1|1021778_1022825_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIILPLVKELAKAEKTS
>CP030196.1|AXD32261.1|1023075_1023984_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP030196.1|AXD32262.1|1023993_1025433_+|sulfate-adenylyltransferase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP030196.1|AXD32263.1|1025419_1026025_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP030196.1|AXD32264.1|1026042_1026399_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP030196.1|AXD32265.1|1026589_1026901_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP030196.1|AXD32266.1|1026919_1027630_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQISVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLLDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP030196.1|AXD32267.1|1027629_1028109_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP030196.1|AXD32268.1|1028105_1029155_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDLNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP030196.1|AXD32269.1|1029135_1029897_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP030196_2	2.2\|641141\|63\|CP030196\|PILER-CR	641141-641203	63	CP030196.1	641223-641285	4	0.937

1. spacer 2.2|641141|63|CP030196|PILER-CR matches to position: 641223-641285, mismatch: 4, identity: 0.937

gcggcttatcggtcagtttcacctcttcataaaacccgtcagtgtaagctggcgggtttt	CRISPR spacer
gcggcttatcggtcagtttcacctcttcataaaacccgttagtgtaagctggcgggtttt	Protospacer
***************************************.********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030196_3	3.15\|1003519\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1003519-1003550	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
CP030196_3	3.15\|1003519\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1003519-1003550	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
CP030196_4	4.9\|1021094\|32\|CP030196\|CRISPRCasFinder,CRT	1021094-1021125	32	NC_015582	Novosphingobium sp. PP1Y plasmid Spl, complete sequence	5932-5963	6	0.812
CP030196_4	4.19\|1021704\|32\|CP030196\|CRISPRCasFinder,CRT	1021704-1021735	32	NC_006824	Aromatoleum aromaticum EbN1 plasmid 2, complete sequence	25444-25475	6	0.812
CP030196_4	4.28\|1021520\|33\|CP030196\|PILER-CR	1021520-1021552	33	NZ_CP039285	Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence	24225-24257	6	0.818
CP030196_4	4.28\|1021520\|33\|CP030196\|PILER-CR	1021520-1021552	33	NC_025151	Leptospira interrogans serovar Lai str. 56601 plasmid Laicp, complete sequence	38359-38391	6	0.818
CP030196_4	4.28\|1021520\|33\|CP030196\|PILER-CR	1021520-1021552	33	NZ_CP006726	Leptospira interrogans serovar Linhai str. 56609 plasmid lcp2, complete sequence	39499-39531	6	0.818
CP030196_3	3.6\|1002969\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1002969-1003000	32	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	208454-208485	7	0.781
CP030196_3	3.6\|1002969\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1002969-1003000	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	449563-449594	7	0.781
CP030196_3	3.6\|1002969\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1002969-1003000	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	167100-167131	7	0.781
CP030196_4	4.10\|1021155\|32\|CP030196\|CRISPRCasFinder,CRT	1021155-1021186	32	NZ_CP052134	Burkholderia glumae strain HN plasmid pbghn2, complete sequence	243537-243568	7	0.781
CP030196_4	4.17\|1021582\|32\|CP030196\|CRISPRCasFinder,CRT	1021582-1021613	32	NC_013860	Azospirillum sp. B510 plasmid pAB510f, complete sequence	12149-12180	7	0.781
CP030196_3	3.1\|1002664\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1002664-1002695	32	NZ_CP036517	Lichenihabitans psoromatis strain PAMC 29148 plasmid p_unnamed2, complete sequence	2337-2368	8	0.75
CP030196_3	3.5\|1002908\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1002908-1002939	32	MH719082	Escherichia phage vB_EcoM_IME392, complete genome	105500-105531	8	0.75
CP030196_3	3.12\|1003336\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1003336-1003367	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	135469-135500	8	0.75
CP030196_3	3.12\|1003336\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1003336-1003367	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	11654-11685	8	0.75
CP030196_4	4.9\|1021094\|32\|CP030196\|CRISPRCasFinder,CRT	1021094-1021125	32	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	609862-609893	8	0.75
CP030196_4	4.10\|1021155\|32\|CP030196\|CRISPRCasFinder,CRT	1021155-1021186	32	NC_019789	Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence	401166-401197	8	0.75
CP030196_4	4.16\|1021521\|32\|CP030196\|CRISPRCasFinder,CRT	1021521-1021552	32	NZ_CP039285	Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence	24226-24257	8	0.75
CP030196_4	4.16\|1021521\|32\|CP030196\|CRISPRCasFinder,CRT	1021521-1021552	32	NC_025151	Leptospira interrogans serovar Lai str. 56601 plasmid Laicp, complete sequence	38359-38390	8	0.75
CP030196_4	4.16\|1021521\|32\|CP030196\|CRISPRCasFinder,CRT	1021521-1021552	32	NZ_CP006726	Leptospira interrogans serovar Linhai str. 56609 plasmid lcp2, complete sequence	39499-39530	8	0.75
CP030196_4	4.17\|1021582\|32\|CP030196\|CRISPRCasFinder,CRT	1021582-1021613	32	NC_015583	Novosphingobium sp. PP1Y plasmid Mpl, complete sequence	1026941-1026972	8	0.75
CP030196_4	4.17\|1021582\|32\|CP030196\|CRISPRCasFinder,CRT	1021582-1021613	32	CP042595	Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence	12523-12554	8	0.75
CP030196_4	4.22\|1021154\|33\|CP030196\|PILER-CR	1021154-1021186	33	NC_019789	Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence	401165-401197	8	0.758
CP030196_3	3.5\|1002908\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1002908-1002939	32	NZ_CP050089	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b2, complete sequence	207066-207097	9	0.719
CP030196_3	3.5\|1002908\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1002908-1002939	32	KC595516	Brevibacillus phage Emery, complete genome	27188-27219	9	0.719
CP030196_3	3.6\|1002969\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1002969-1003000	32	DQ674738	Aeromonas phage phiO18P, complete genome	15707-15738	9	0.719
CP030196_3	3.6\|1002969\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1002969-1003000	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	380725-380756	9	0.719
CP030196_3	3.6\|1002969\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1002969-1003000	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153785-153816	9	0.719
CP030196_3	3.10\|1003213\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1003213-1003244	32	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	45237-45268	9	0.719
CP030196_4	4.3\|1020728\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020728-1020759	32	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	91540-91571	9	0.719
CP030196_4	4.3\|1020728\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020728-1020759	32	NZ_CP024426	Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence	158569-158600	9	0.719
CP030196_4	4.3\|1020728\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020728-1020759	32	NZ_CP020445	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence	98343-98374	9	0.719
CP030196_4	4.3\|1020728\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020728-1020759	32	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	112221-112252	9	0.719
CP030196_4	4.3\|1020728\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020728-1020759	32	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	309125-309156	9	0.719
CP030196_4	4.6\|1020911\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020911-1020942	32	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	410370-410401	9	0.719
CP030196_4	4.6\|1020911\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020911-1020942	32	NZ_KT935446	Klebsiella pneumoniae strain Kp2964 plasmid 2964TF, complete sequence	44593-44624	9	0.719
CP030196_4	4.6\|1020911\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020911-1020942	32	NZ_CP010380	Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence	294124-294155	9	0.719
CP030196_4	4.6\|1020911\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020911-1020942	32	NZ_CP042479	Citrobacter freundii strain C50 plasmid pC50_001, complete sequence	108817-108848	9	0.719
CP030196_4	4.6\|1020911\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020911-1020942	32	CP049311	Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N53023 plasmid pN53023, complete sequence	101516-101547	9	0.719
CP030196_4	4.6\|1020911\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020911-1020942	32	NZ_CP026208	Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence	188150-188181	9	0.719
CP030196_4	4.6\|1020911\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020911-1020942	32	NZ_CP010360	Enterobacter roggenkampii strain 35734 plasmid p35734-141.404kb, complete sequence	59621-59652	9	0.719
CP030196_4	4.6\|1020911\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020911-1020942	32	CP049307	Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N58631 plasmid p58631, complete sequence	290546-290577	9	0.719
CP030196_4	4.6\|1020911\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020911-1020942	32	NZ_CP012168	Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-239.973kb, complete sequence	42220-42251	9	0.719
CP030196_4	4.6\|1020911\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020911-1020942	32	NZ_CP032179	Citrobacter freundii strain AR_0116 plasmid unnamed1, complete sequence	187748-187779	9	0.719
CP030196_4	4.6\|1020911\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020911-1020942	32	NZ_CP017294	Pseudomonas aeruginosa strain PA83 plasmid unnamed1, complete sequence	191036-191067	9	0.719
CP030196_4	4.6\|1020911\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020911-1020942	32	NZ_CP031135	Escherichia coli strain CFSAN064035 plasmid pGMI17-003_1, complete sequence	221163-221194	9	0.719
CP030196_4	4.11\|1021216\|32\|CP030196\|CRISPRCasFinder,CRT	1021216-1021247	32	NZ_CP032091	Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence	654033-654064	9	0.719
CP030196_4	4.16\|1021521\|32\|CP030196\|CRISPRCasFinder,CRT	1021521-1021552	32	NZ_CP011404	Lactobacillus salivarius str. Ren plasmid pR1, complete sequence	14283-14314	9	0.719
CP030196_4	4.16\|1021521\|32\|CP030196\|CRISPRCasFinder,CRT	1021521-1021552	32	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	170262-170293	9	0.719
CP030196_4	4.17\|1021582\|32\|CP030196\|CRISPRCasFinder,CRT	1021582-1021613	32	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	153622-153653	9	0.719
CP030196_4	4.29\|1021581\|33\|CP030196\|PILER-CR	1021581-1021613	33	NC_015583	Novosphingobium sp. PP1Y plasmid Mpl, complete sequence	1026941-1026973	9	0.727
CP030196_3	3.16\|1003580\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1003580-1003611	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
CP030196_3	3.19\|1003763\|32\|CP030196\|CRISPRCasFinder,CRT	1003763-1003794	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
CP030196_4	4.6\|1020911\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020911-1020942	32	NZ_CP027239	Dietzia sp. oral taxon 368 strain W5195 plasmid unnamed1, complete sequence	55279-55310	10	0.688
CP030196_4	4.10\|1021155\|32\|CP030196\|CRISPRCasFinder,CRT	1021155-1021186	32	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1709285-1709316	10	0.688
CP030196_4	4.10\|1021155\|32\|CP030196\|CRISPRCasFinder,CRT	1021155-1021186	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	182162-182193	10	0.688
CP030196_3	3.1\|1002664\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1002664-1002695	32	NZ_CP054604	Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed5, complete sequence	230839-230870	11	0.656
CP030196_3	3.6\|1002969\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1002969-1003000	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	234768-234799	11	0.656
CP030196_3	3.6\|1002969\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1002969-1003000	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	299431-299462	11	0.656
CP030196_4	4.1\|1020606\|32\|CP030196\|PILER-CR,CRISPRCasFinder,CRT	1020606-1020637	32	NC_015378	Burkholderia gladioli BSR3 plasmid bgla_3p, complete sequence	1758-1789	11	0.656

1. spacer 3.15|1003519|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

2. spacer 3.15|1003519|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

3. spacer 4.9|1021094|32|CP030196|CRISPRCasFinder,CRT matches to NC_015582 (Novosphingobium sp. PP1Y plasmid Spl, complete sequence) position: , mismatch: 6, identity: 0.812

-gtattgcgctgtcggcgcaggaataccgcgat	CRISPR spacer
gggagtg-gttgtcggcgcaggaagagcgcgat	Protospacer
 * * ** *.************** * ******

4. spacer 4.19|1021704|32|CP030196|CRISPRCasFinder,CRT matches to NC_006824 (Aromatoleum aromaticum EbN1 plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.812

gcagc--actggctggagtggctggcgaaaaatc	CRISPR spacer
--agccgaatggcgggagtggctggcgaagaagc	Protospacer
  ***  * **** ***************.** *

5. spacer 4.28|1021520|33|CP030196|PILER-CR matches to NZ_CP039285 (Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence) position: , mismatch: 6, identity: 0.818

--gttactgaaacggataaaaaataatcaggggtg	CRISPR spacer
cagtt--taagacggataaaaaatattcagtggtg	Protospacer
  ***  *.*.************** **** ****

6. spacer 4.28|1021520|33|CP030196|PILER-CR matches to NC_025151 (Leptospira interrogans serovar Lai str. 56601 plasmid Laicp, complete sequence) position: , mismatch: 6, identity: 0.818

--gttactgaaacggataaaaaataatcaggggtg	CRISPR spacer
cagtt--taagacggataaaaaatattcagtggtg	Protospacer
  ***  *.*.************** **** ****

7. spacer 4.28|1021520|33|CP030196|PILER-CR matches to NZ_CP006726 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp2, complete sequence) position: , mismatch: 6, identity: 0.818

--gttactgaaacggataaaaaataatcaggggtg	CRISPR spacer
cagtt--taagacggataaaaaatattcagtggtg	Protospacer
  ***  *.*.************** **** ****

8. spacer 3.6|1002969|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*

9. spacer 3.6|1002969|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcaccgccgatcctttcaccgccgcc	Protospacer
********* ********* ****. *.  **

10. spacer 3.6|1002969|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*

11. spacer 4.10|1021155|32|CP030196|CRISPRCasFinder,CRT matches to NZ_CP052134 (Burkholderia glumae strain HN plasmid pbghn2, complete sequence) position: , mismatch: 7, identity: 0.781

ctggtctggtgtggcgcgacggacgcggcgag	CRISPR spacer
tttgtcttgtgcggcgcgacggacgcagtcag	Protospacer
.* **** ***.**************.*. **

12. spacer 4.17|1021582|32|CP030196|CRISPRCasFinder,CRT matches to NC_013860 (Azospirillum sp. B510 plasmid pAB510f, complete sequence) position: , mismatch: 7, identity: 0.781

--ggtgagctggcgtcattgcccgccccggcgat	CRISPR spacer
ccgctga--tggtgtcattgcccgccccgccgcc	Protospacer
  * ***  ***.**************** ** .

13. spacer 3.1|1002664|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036517 (Lichenihabitans psoromatis strain PAMC 29148 plasmid p_unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gcttag-ccgatcctgatgacccggccagaaag	CRISPR spacer
-cgcagtccgatcctgatgagccgggcagaggc	Protospacer
 * .** ************* **** ****..

14. spacer 3.5|1002908|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to MH719082 (Escherichia phage vB_EcoM_IME392, complete genome) position: , mismatch: 8, identity: 0.75

gtattcagctcttgccgcaatatgccgctcaa	CRISPR spacer
gtatttaactcttgccgcaatatgaatagcag	Protospacer
*****.*.****************     **.

15. spacer 3.12|1003336|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
attcactatcagacattttattcagttctgcc	Protospacer
  ***** ** *****************  .

16. spacer 3.12|1003336|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
cgcgcgtgtctgacattgtattcagttcattt	Protospacer
**.   * ********* **********.**

17. spacer 4.9|1021094|32|CP030196|CRISPRCasFinder,CRT matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 8, identity: 0.75

gtattgcgctgtcggcgcaggaataccgcgat	CRISPR spacer
ggagcgatctgacggcgcaggaattccgcgac	Protospacer
* * .*  *** ************ ******.

18. spacer 4.10|1021155|32|CP030196|CRISPRCasFinder,CRT matches to NC_019789 (Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence) position: , mismatch: 8, identity: 0.75

ctggtctggtgtggcgcgacggacgcggcgag	CRISPR spacer
gggatatggtgtggcgcgacggcagcggcgca	Protospacer
  *.* ****************  ****** .

19. spacer 4.16|1021521|32|CP030196|CRISPRCasFinder,CRT matches to NZ_CP039285 (Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence) position: , mismatch: 8, identity: 0.75

ttactgaaacggataaaaaataatcaggggtg	CRISPR spacer
agtttaagacggataaaaaatattcagtggtg	Protospacer
   .*.*.************** **** ****

20. spacer 4.16|1021521|32|CP030196|CRISPRCasFinder,CRT matches to NC_025151 (Leptospira interrogans serovar Lai str. 56601 plasmid Laicp, complete sequence) position: , mismatch: 8, identity: 0.75

ttactgaaacggataaaaaataatcaggggtg	CRISPR spacer
agtttaagacggataaaaaatattcagtggtg	Protospacer
   .*.*.************** **** ****

21. spacer 4.16|1021521|32|CP030196|CRISPRCasFinder,CRT matches to NZ_CP006726 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp2, complete sequence) position: , mismatch: 8, identity: 0.75

ttactgaaacggataaaaaataatcaggggtg	CRISPR spacer
agtttaagacggataaaaaatattcagtggtg	Protospacer
   .*.*.************** **** ****

22. spacer 4.17|1021582|32|CP030196|CRISPRCasFinder,CRT matches to NC_015583 (Novosphingobium sp. PP1Y plasmid Mpl, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgagctggcgtcattgcccgccccggcgat	CRISPR spacer
tatcgcccggcttcattgcccgcgccggcgat	Protospacer
 .* . *.*** *********** ********

23. spacer 4.17|1021582|32|CP030196|CRISPRCasFinder,CRT matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgagctggcgtcattgcccgccccggcgat	CRISPR spacer
agagggtcggcgtccttgcccggcccggcgag	Protospacer
.* *.*..****** ******* ********

24. spacer 4.22|1021154|33|CP030196|PILER-CR matches to NC_019789 (Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence) position: , mismatch: 8, identity: 0.758

gctggtctggtgtggcgcgacggacgcggcgag	CRISPR spacer
ggggatatggtgtggcgcgacggcagcggcgca	Protospacer
*  *.* ****************  ****** .

25. spacer 3.5|1002908|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050089 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b2, complete sequence) position: , mismatch: 9, identity: 0.719

gtattcagctcttgccgcaatatgccgctcaa	CRISPR spacer
tgaaaatgctcttgccgcaataaaccgctcac	Protospacer
  *    *************** .*******

26. spacer 3.5|1002908|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to KC595516 (Brevibacillus phage Emery, complete genome) position: , mismatch: 9, identity: 0.719

gtattcagctcttgccgcaatatgccgctcaa	CRISPR spacer
gtatgcagctcttgcctcaatatctgccttct	Protospacer
**** *********** ****** .  **.

27. spacer 3.6|1002969|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcagcgccgagcagttcagcaaactg	Protospacer
**************** * *****  . .*.

28. spacer 3.6|1002969|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
gcggcatcagcgccgaccggttcaccgtcagg	Protospacer
 ***************.* *****. **

29. spacer 3.6|1002969|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatgagcgccgatcagttcgacgccctg	Protospacer
******* ********** ****.  *. *.

30. spacer 3.10|1003213|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccccgatagcgacgcttctgtagtcactggca	CRISPR spacer
gtccgatagcgacacttcggtagtcaggcgtg	Protospacer
 .***********.**** *******   *..

31. spacer 4.3|1020728|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

aactatcagaagatcgcgcagaactggcgtaa	CRISPR spacer
ggcgatcagaagatcgagctgaactggtcgat	Protospacer
..* ************ ** *******.  *

32. spacer 4.3|1020728|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024426 (Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence) position: , mismatch: 9, identity: 0.719

aactatcagaagatcgcgcagaactggcgtaa	CRISPR spacer
acggatcagaagatcgcggcgaactggtcgat	Protospacer
*   **************  *******.  *

33. spacer 4.3|1020728|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020445 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

aactatcagaagatcgcgcagaactggcgtaa	CRISPR spacer
acggatcagaagatcgcggcgaactggtcgat	Protospacer
*   **************  *******.  *

34. spacer 4.3|1020728|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

aactatcagaagatcgcgcagaactggcgtaa	CRISPR spacer
acggatcagaagatcgcggcgaactggtcgat	Protospacer
*   **************  *******.  *

35. spacer 4.3|1020728|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 9, identity: 0.719

aactatcagaagatcgcgcagaactggcgtaa	CRISPR spacer
acggatcagaagatcgcggcgaactggtcgat	Protospacer
*   **************  *******.  *

36. spacer 4.6|1020911|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 9, identity: 0.719

tccggtcaggggaacagcataacaattccgtg	CRISPR spacer
tccggtgaggggaacagcatgacgacactcaa	Protospacer
****** *************.**.*. *.  .

37. spacer 4.6|1020911|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT935446 (Klebsiella pneumoniae strain Kp2964 plasmid 2964TF, complete sequence) position: , mismatch: 9, identity: 0.719

tccggtcaggggaacagcataacaattccgtg	CRISPR spacer
tccggtgaggggaacagcatgacgacactcaa	Protospacer
****** *************.**.*. *.  .

38. spacer 4.6|1020911|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010380 (Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence) position: , mismatch: 9, identity: 0.719

tccggtcaggggaacagcataacaattccgtg	CRISPR spacer
tccggtgaggggaacagcatgacgacactcaa	Protospacer
****** *************.**.*. *.  .

39. spacer 4.6|1020911|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042479 (Citrobacter freundii strain C50 plasmid pC50_001, complete sequence) position: , mismatch: 9, identity: 0.719

tccggtcaggggaacagcataacaattccgtg	CRISPR spacer
tccggtgaggggaacagcatgacgacactcaa	Protospacer
****** *************.**.*. *.  .

40. spacer 4.6|1020911|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to CP049311 (Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N53023 plasmid pN53023, complete sequence) position: , mismatch: 9, identity: 0.719

tccggtcaggggaacagcataacaattccgtg	CRISPR spacer
tccggtgaggggaacagcatgacgacactcaa	Protospacer
****** *************.**.*. *.  .

41. spacer 4.6|1020911|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026208 (Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence) position: , mismatch: 9, identity: 0.719

tccggtcaggggaacagcataacaattccgtg	CRISPR spacer
tccggtgaggggaacagcatgacgacactcaa	Protospacer
****** *************.**.*. *.  .

42. spacer 4.6|1020911|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010360 (Enterobacter roggenkampii strain 35734 plasmid p35734-141.404kb, complete sequence) position: , mismatch: 9, identity: 0.719

tccggtcaggggaacagcataacaattccgtg	CRISPR spacer
tccggtgaggggaacagcatgacgacactcaa	Protospacer
****** *************.**.*. *.  .

43. spacer 4.6|1020911|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to CP049307 (Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N58631 plasmid p58631, complete sequence) position: , mismatch: 9, identity: 0.719

tccggtcaggggaacagcataacaattccgtg	CRISPR spacer
tccggtgaggggaacagcatgacgacactcaa	Protospacer
****** *************.**.*. *.  .

44. spacer 4.6|1020911|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012168 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-239.973kb, complete sequence) position: , mismatch: 9, identity: 0.719

tccggtcaggggaacagcataacaattccgtg	CRISPR spacer
tccggtgaggggaacagcatgacgacactcaa	Protospacer
****** *************.**.*. *.  .

45. spacer 4.6|1020911|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032179 (Citrobacter freundii strain AR_0116 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tccggtcaggggaacagcataacaattccgtg	CRISPR spacer
tccggtgaggggaacagcatgacgacactcaa	Protospacer
****** *************.**.*. *.  .

46. spacer 4.6|1020911|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017294 (Pseudomonas aeruginosa strain PA83 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tccggtcaggggaacagcataacaattccgtg	CRISPR spacer
tccggtgaggggaacagcatgacgacactcaa	Protospacer
****** *************.**.*. *.  .

47. spacer 4.6|1020911|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031135 (Escherichia coli strain CFSAN064035 plasmid pGMI17-003_1, complete sequence) position: , mismatch: 9, identity: 0.719

tccggtcaggggaacagcataacaattccgtg	CRISPR spacer
tccggtgaggggaacagcatgacgacactcaa	Protospacer
****** *************.**.*. *.  .

48. spacer 4.11|1021216|32|CP030196|CRISPRCasFinder,CRT matches to NZ_CP032091 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gagatttaaatgatccacacaattacgttaaa	CRISPR spacer
tctatttaaatgatccgcacatttaccatgac	Protospacer
   *************.**** ****  *.*

49. spacer 4.16|1021521|32|CP030196|CRISPRCasFinder,CRT matches to NZ_CP011404 (Lactobacillus salivarius str. Ren plasmid pR1, complete sequence) position: , mismatch: 9, identity: 0.719

ttactgaaacggataaaaaataatcaggggtg	CRISPR spacer
tatctgaaactgataaaaaatattcatccttt	Protospacer
*  ******* *********** ***    *

50. spacer 4.16|1021521|32|CP030196|CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 9, identity: 0.719

ttactgaaacggataaaaaataatcaggggtg	CRISPR spacer
tatctgaaactgataaaaaatattcatccttt	Protospacer
*  ******* *********** ***    *

51. spacer 4.17|1021582|32|CP030196|CRISPRCasFinder,CRT matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 9, identity: 0.719

ggtgagctggcgtcattgcccgccccggcgat	CRISPR spacer
gtccacatggcgtcattgccggccccgccgga	Protospacer
* . *  ************* ****** **.

52. spacer 4.29|1021581|33|CP030196|PILER-CR matches to NC_015583 (Novosphingobium sp. PP1Y plasmid Mpl, complete sequence) position: , mismatch: 9, identity: 0.727

gggtgagctggcgtcattgcccgccccggcgat	CRISPR spacer
ttatcgcccggcttcattgcccgcgccggcgat	Protospacer
  .* . *.*** *********** ********

53. spacer 3.16|1003580|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatcgagagtgcgaagaggcagaacgggca	CRISPR spacer
gaaggtggcagtgccaagagacagaacgggca	Protospacer
  .. .*. ***** *****.***********

54. spacer 3.19|1003763|32|CP030196|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*

55. spacer 4.6|1020911|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027239 (Dietzia sp. oral taxon 368 strain W5195 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tccggtcaggggaacagcataacaattccgtg	CRISPR spacer
ggatggaaggggaacagcatggcaattccgaa	Protospacer
    *  *************..******** .

56. spacer 4.10|1021155|32|CP030196|CRISPRCasFinder,CRT matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 10, identity: 0.688

ctggtctggtgtggcgcgacggacgcggcgag	CRISPR spacer
tgtacgtggtgcggcgcgacggacgcagcctg	Protospacer
.  .. *****.**************.**  *

57. spacer 4.10|1021155|32|CP030196|CRISPRCasFinder,CRT matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 10, identity: 0.688

ctggtctggtgtggcgcgacggacgcggcgag	CRISPR spacer
gccgtctcgtgtggcgcaacggacgcaccatc	Protospacer
 . **** *********.********. *.

58. spacer 3.1|1002664|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054604 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed5, complete sequence) position: , mismatch: 11, identity: 0.656

gcttagccgatcctgatgacccggccagaaag	CRISPR spacer
aattagccgcgcctgatgacccggctcaccga	Protospacer
. *******  **************. .  ..

59. spacer 3.6|1002969|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

60. spacer 3.6|1002969|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

61. spacer 4.1|1020606|32|CP030196|PILER-CR,CRISPRCasFinder,CRT matches to NC_015378 (Burkholderia gladioli BSR3 plasmid bgla_3p, complete sequence) position: , mismatch: 11, identity: 0.656

ttggcgtcgctgcgtactggttaacgtggtaa	CRISPR spacer
cactgttcgctgcgtgctgggtaacgtggagt	Protospacer
.     *********.**** ******** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

706696 : 750360

Vibrio_phage(46.51%)

plate,head,transposase,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD31953.1\|706696_707951_+\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	4.8e-18	34.5
AXD31954.1\|708070_708748_-	protein-disulfide oxidoreductase DsbI	NA	NA	NA	NA
AXD31955.1\|708762_709434_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA
AXD31956.1\|709453_711250_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA
AXD31957.1\|711649_711826_+	DUF4051 domain-containing protein	NA	NA	NA	NA
AXD31958.1\|711892_712666_-	zinc transporter ZupT	NA	NA	NA	NA
AXD31959.1\|713750_714260_-	DNA-binding protein	NA	NA	NA	NA
AXD31960.1\|714440_714677_+	transcriptional regulator	A0A2I7S995	Vibrio_phage	1.2e-18	64.7
AXD31961.1\|714651_716640_+\|transposase	transposase	C9DGL1	Escherichia_phage	0.0e+00	89.7
AXD31962.1\|716678_717617_+	DNA transposition protein	A0A0C4UQR3	Shigella_phage	2.4e-155	89.1
AXD31963.1\|717630_717858_+	hypothetical protein	A0A0C4UQY4	Shigella_phage	3.4e-31	85.3
AXD31964.1\|717890_718160_+	hypothetical protein	C9DGL5	Escherichia_phage	6.3e-16	50.6
AXD31965.1\|718180_718600_+	hypothetical protein	A0A0C4UR25	Shigella_phage	4.8e-63	87.4
AXD31966.1\|718612_718900_+	hypothetical protein	C9DGL7	Escherichia_phage	2.9e-27	68.4
AXD31967.1\|718918_719443_+	host-nuclease inhibitor protein Gam	A0A0C4UQY5	Shigella_phage	1.9e-85	93.7
AXD31968.1\|719483_719798_+	hypothetical protein	NA	NA	NA	NA
AXD31969.1\|719769_720012_+	hypothetical protein	NA	NA	NA	NA
AXD31970.1\|720004_720202_+	hypothetical protein	NA	NA	NA	NA
AXD31971.1\|720179_720482_+	hypothetical protein	A0A0C4UQR5	Shigella_phage	8.0e-12	47.2
AXD31972.1\|720452_720857_-	DUF2513 domain-containing protein	NA	NA	NA	NA
AXD31973.1\|720887_721439_+	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	3.8e-84	80.8
AXD35824.1\|721444_721891_+	transcriptional regulator	A0A0C4UR27	Shigella_phage	4.3e-38	60.3
AXD31974.1\|721973_722561_+	peptidoglycan-binding protein	A0A2I7S9B9	Vibrio_phage	5.0e-34	41.1
AXD31975.1\|722562_722790_+	hypothetical protein	A0A0C4UQR6	Shigella_phage	2.4e-24	67.1
AXD31976.1\|722773_723184_+	hypothetical protein	NA	NA	NA	NA
AXD31977.1\|723171_723780_+	hypothetical protein	NA	NA	NA	NA
AXD31978.1\|723776_724004_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
AXD31979.1\|723988_724294_+	DUF2730 family protein	M1Q558	Vibrio_phage	3.6e-12	39.4
AXD35825.1\|724299_724587_+	ArsR family transcriptional regulator	A0A0C4UR00	Shigella_phage	2.7e-25	60.6
AXD31980.1\|724737_725319_+	hypothetical protein	M1PJ86	Vibrio_phage	1.1e-49	55.5
AXD35826.1\|725324_726851_+	hypothetical protein	M1NVQ0	Vibrio_phage	3.2e-197	68.4
AXD31981.1\|726847_728419_+	DUF935 domain-containing protein	A0A2I7S9K0	Vibrio_phage	6.2e-156	56.7
AXD31982.1\|728411_729176_+	hypothetical protein	M4M9M5	Vibrio_phage	4.7e-93	60.1
AXD31983.1\|729390_730353_+	peptidase	M1Q578	Vibrio_phage	3.5e-77	46.6
AXD31984.1\|730352_731255_+\|head	phage head protein	M4MB71	Vibrio_phage	4.0e-99	57.6
AXD31985.1\|731326_731632_+	hypothetical protein	NA	NA	NA	NA
AXD31986.1\|731637_732075_+	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	3.7e-34	50.3
AXD31987.1\|732074_732617_+	phage morphogenesis protein	A0A2I7S9D7	Vibrio_phage	6.0e-58	62.6
AXD31988.1\|732613_733225_+	hypothetical protein	M1PJ94	Vibrio_phage	6.2e-35	43.8
AXD31989.1\|733190_733409_+	hypothetical protein	NA	NA	NA	NA
AXD31990.1\|733413_734889_+\|tail	phage tail protein	M1Q565	Vibrio_phage	1.0e-152	54.7
AXD31991.1\|734898_735255_+\|tail	phage tail protein	A0A2P1A4D6	Alteromonadaceae_phage	2.9e-13	35.5
AXD31992.1\|735256_735652_+	hypothetical protein	M4MB64	Vibrio_phage	1.4e-19	47.9
AXD31993.1\|735738_737595_+\|tail	phage tail protein	A0A2P9JZK0	Alteromonadaceae_phage	7.6e-60	32.8
AXD31994.1\|737594_738869_+	multidrug DMT transporter	A0A2I7S9E8	Vibrio_phage	9.4e-70	36.9
AXD31995.1\|738868_739939_+\|tail	phage tail protein	M4M9L5	Vibrio_phage	4.5e-89	47.2
AXD31996.1\|739929_740466_+\|plate	phage baseplate protein	A0A2I7S9F6	Vibrio_phage	1.1e-24	39.7
AXD31997.1\|740462_740915_+	hypothetical protein	A0A2I7S9F0	Vibrio_phage	9.8e-22	41.7
AXD31998.1\|740904_741981_+\|plate	phage baseplate protein	A0A2I7S9E5	Vibrio_phage	1.5e-92	51.5
AXD31999.1\|741965_742550_+	DUF2313 domain-containing protein	M4M9M8	Vibrio_phage	4.8e-45	45.1
AXD32000.1\|742553_743549_+\|tail	phage tail protein	Q71TP5	Escherichia_phage	8.8e-47	46.5
AXD32001.1\|743566_744097_+\|tail	phage tail protein	A0A0U2QV64	Escherichia_phage	1.4e-51	54.5
AXD32002.1\|744083_746609_+	shikimate transporter	A0A0U2SH60	Escherichia_phage	2.8e-113	49.3
AXD32003.1\|746623_747199_+	DUF4376 domain-containing protein	Q8W610	Enterobacteria_phage	5.9e-72	72.5
AXD35827.1\|747322_747508_+	Com family DNA-binding transcriptional regulator	A0A0C4UQS3	Shigella_phage	2.9e-20	71.0
AXD32004.1\|747458_748154_+	protein mom	A0A0C4UQZ7	Shigella_phage	1.0e-126	93.5
AXD32005.1\|748519_749683_-	glutathionylspermidine synthase family protein	B2ZXR7	Ralstonia_phage	1.4e-88	42.9
AXD32006.1\|749688_750360_-	DUF1190 family protein	A0A173GEW8	Erwinia_phage	5.7e-34	44.9

DBSCAN-SWA_2

1722137 : 1731308

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD32888.1\|1722137_1723085_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
AXD32889.1\|1723068_1723800_+	ABC transporter permease	NA	NA	NA	NA
AXD32890.1\|1723780_1723888_-	hypothetical protein	NA	NA	NA	NA
AXD32891.1\|1723947_1724679_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AXD32892.1\|1724901_1726587_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
AXD32893.1\|1726583_1727303_+	DNA-binding response regulator	NA	NA	NA	NA
AXD32894.1\|1727349_1727817_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.1e-73	89.7
AXD32895.1\|1727873_1728404_-	hypothetical protein	NA	NA	NA	NA
AXD32896.1\|1728575_1729034_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AXD32897.1\|1729274_1731308_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	4.7e-55	26.9

DBSCAN-SWA_3

1931271 : 1938552

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD33055.1\|1931271_1931691_+	protein UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AXD33056.1\|1931693_1932962_+	protein UmuC	I6RSM4	Salmonella_phage	9.3e-227	91.9
AXD33057.1\|1933416_1933629_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AXD35870.1\|1933639_1933828_+	cold-shock protein	NA	NA	NA	NA
AXD33058.1\|1934087_1935299_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	4.4e-109	56.2
AXD33059.1\|1935961_1936273_+	hypothetical protein	NA	NA	NA	NA
AXD33060.1\|1936352_1937048_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	28.2
AXD33061.1\|1937121_1938552_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_4

2041796 : 2129633

107

Escherichia_phage(66.67%)

plate,holin,tail,terminase,integrase,protease

attL 2090617:2090632|attR 2124164:2124179

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD33171.1\|2041796_2042027_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
AXD33172.1\|2042164_2042539_+	CopC domain-containing protein YobA	NA	NA	NA	NA
AXD33173.1\|2042542_2043415_+	hypothetical protein	NA	NA	NA	NA
AXD33174.1\|2043431_2043809_+	DUF2511 domain-containing protein	NA	NA	NA	NA
AXD35874.1\|2043842_2043962_+	hypothetical protein	NA	NA	NA	NA
AXD33175.1\|2044155_2045235_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	2.0e-97	52.4
AXD33176.1\|2045209_2045482_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	4.2e-12	44.6
AXD33177.1\|2045589_2045778_-	hypothetical protein	A0A0U2QL97	Escherichia_phage	3.7e-23	86.9
AXD33178.1\|2045770_2045965_-	restriction alleviation protein, Lar family	A0A0U2QQP4	Escherichia_phage	1.4e-25	78.1
AXD33179.1\|2046011_2046692_-	exonuclease	A0A0P0ZCD4	Stx2-converting_phage	9.6e-122	90.3
AXD33180.1\|2046688_2047474_-	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	2.2e-141	93.5
AXD35875.1\|2047479_2047776_-	host-nuclease inhibitor protein Gam	A0A0M5M5Z9	Salmonella_phage	5.8e-39	84.7
AXD33181.1\|2049574_2049850_-	hypothetical protein	A0A0U2QW85	Escherichia_phage	1.2e-43	97.8
AXD35876.1\|2049924_2050095_-	hypothetical protein	A0A0U2SHB5	Escherichia_phage	7.9e-17	71.4
AXD33182.1\|2050094_2050316_-	cell division protein FtsZ	A0A0U2RTC4	Escherichia_phage	6.9e-37	97.3
AXD33183.1\|2050830_2051100_-	hypothetical protein	NA	NA	NA	NA
AXD33184.1\|2051099_2051255_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	6.1e-08	55.3
AXD33185.1\|2051265_2051400_-	hypothetical protein	NA	NA	NA	NA
AXD33186.1\|2051634_2052102_-	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	1.0e-53	66.9
AXD33187.1\|2052205_2052481_+	helix-turn-helix domain-containing protein	A0A0U2S629	Escherichia_phage	3.0e-21	63.4
AXD33188.1\|2052464_2052887_+	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	2.2e-68	94.3
AXD33189.1\|2052906_2053320_+	hypothetical protein	NA	NA	NA	NA
AXD33190.1\|2053619_2054768_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	2.2e-65	84.2
AXD33191.1\|2054774_2055521_+	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	4.0e-113	81.1
AXD33192.1\|2055551_2055947_+	DNA-binding protein	A0A0U2QQN3	Escherichia_phage	5.8e-26	48.9
AXD33193.1\|2055943_2056186_+	hypothetical protein	NA	NA	NA	NA
AXD33194.1\|2056401_2056926_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	1.0e-38	62.2
AXD33195.1\|2057564_2058500_-	hypothetical protein	NA	NA	NA	NA
AXD33196.1\|2058820_2058976_+	protein hokC	A0A0U2QV81	Escherichia_phage	1.3e-13	80.4
AXD33197.1\|2059496_2060096_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.8e-103	89.9
AXD33198.1\|2060095_2060386_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	5.1e-40	76.0
AXD33199.1\|2060382_2060922_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.4e-67	68.0
AXD33200.1\|2061049_2061355_+	hypothetical protein	NA	NA	NA	NA
AXD33201.1\|2063714_2064140_+	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	2.3e-60	87.2
AXD33202.1\|2064305_2064698_+\|holin	holin	Q9MBZ5	Enterobacteria_phage	2.3e-35	62.0
AXD33203.1\|2064687_2064969_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.3e-16	49.4
AXD33204.1\|2064965_2065544_+	hypothetical protein	A0A0U2S643	Escherichia_phage	3.7e-90	84.0
AXD35877.1\|2065699_2065813_+	hypothetical protein	A0A2L1IV24	Escherichia_phage	2.5e-11	89.2
AXD33205.1\|2066001_2066241_-	hypothetical protein	NA	NA	NA	NA
AXD33206.1\|2066319_2066511_+	DUF4222 domain-containing protein	NA	NA	NA	NA
AXD33207.1\|2066608_2067400_+	transcriptional regulator	R4TG31	Halovirus	2.3e-50	43.2
AXD33208.1\|2067389_2068241_+	hypothetical protein	A0A1B1INP7	uncultured_Mediterranean_phage	1.9e-82	53.8
AXD35878.1\|2068299_2068509_+	hypothetical protein	NA	NA	NA	NA
AXD33209.1\|2068512_2069592_+\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	4.3e-132	85.8
AXD33210.1\|2069581_2070910_+\|terminase	terminase	A0A0U2JTW9	Escherichia_phage	1.8e-260	98.0
AXD33211.1\|2070928_2072365_+	hypothetical protein	A0A0U2S5X9	Escherichia_phage	1.5e-257	92.9
AXD35879.1\|2072423_2073143_+	hypothetical protein	A0A0U2I1R8	Escherichia_phage	1.0e-129	93.7
AXD33212.1\|2073123_2074446_+	NUDIX hydrolase	A0A0U2QW61	Escherichia_phage	2.0e-184	93.6
AXD33213.1\|2074438_2075056_+	hypothetical protein	A0A0U2S600	Escherichia_phage	5.9e-118	100.0
AXD33214.1\|2075070_2076099_+	hypothetical protein	A0A0U2QQI2	Escherichia_phage	1.6e-189	99.1
AXD33215.1\|2076157_2076628_+	hypothetical protein	A0A0U2SAX6	Escherichia_phage	4.2e-84	99.4
AXD33216.1\|2076627_2077068_+	hypothetical protein	A0A0U2S646	Escherichia_phage	4.7e-77	98.6
AXD33217.1\|2077064_2077505_+	hypothetical protein	A0A0U2RTA8	Escherichia_phage	2.2e-82	98.6
AXD33218.1\|2077491_2078436_+	hypothetical protein	A0A0U2SH76	Escherichia_phage	5.2e-166	94.9
AXD33219.1\|2078435_2079773_+	hypothetical protein	A0A0U2KD19	Escherichia_phage	6.2e-213	83.3
AXD33220.1\|2079796_2080228_+	hypothetical protein	A0A0U2S616	Escherichia_phage	4.3e-75	99.3
AXD33221.1\|2080224_2080842_+	hypothetical protein	A0A0U2S634	Escherichia_phage	7.2e-92	82.4
AXD33222.1\|2082967_2083636_+	hypothetical protein	A0A0U2JGI7	Escherichia_phage	1.8e-117	94.1
AXD33223.1\|2083632_2083899_+	hypothetical protein	A0A0U2JGJ3	Escherichia_phage	1.1e-41	90.9
AXD33224.1\|2083898_2084906_+	hypothetical protein	A0A0U2QL72	Escherichia_phage	4.0e-172	85.6
AXD33225.1\|2084905_2085619_+\|plate	phage baseplate protein	A0A0U2JTX5	Escherichia_phage	2.2e-124	95.3
AXD33226.1\|2085721_2085859_+	hypothetical protein	A0A0M4S639	Salmonella_phage	3.9e-14	80.0
AXD33227.1\|2086114_2086660_+	Rha family transcriptional regulator	A0A0P0ZFJ1	Escherichia_phage	1.9e-56	63.6
AXD33228.1\|2086705_2087053_+	hypothetical protein	A0A0U2I1S2	Escherichia_phage	1.4e-60	96.5
AXD33229.1\|2087028_2087589_-	phage antirepressor Ant	A0A0U2QL80	Escherichia_phage	2.1e-82	83.9
AXD35880.1\|2087869_2088175_-	hypothetical protein	NA	NA	NA	NA
AXD33230.1\|2088430_2089657_+	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	1.9e-213	91.9
AXD33231.1\|2089640_2090267_+	hypothetical protein	A0A0U2RK03	Escherichia_phage	3.5e-118	96.6
AXD33232.1\|2090263_2091586_+\|tail	tail fiber protein	A0A0U2SAV1	Escherichia_phage	1.0e-106	81.8
2090617:2090632	attL	NA	NA	NA	NA
AXD33233.1\|2091585_2092167_+\|tail	phage tail protein	A0A0M4RTP2	Salmonella_phage	5.8e-67	66.0
AXD33234.1\|2092230_2094504_+\|tail	phage tail protein	A0A0U2SH60	Escherichia_phage	4.7e-104	60.1
AXD33235.1\|2094518_2095091_+	DUF4376 domain-containing protein	Q8W610	Enterobacteria_phage	6.7e-68	68.1
AXD33236.1\|2095520_2096348_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	4.0e-69	50.5
AXD33237.1\|2096453_2096810_+	hypothetical protein	NA	NA	NA	NA
AXD33238.1\|2097983_2098181_-	hypothetical protein	NA	NA	NA	NA
AXD33239.1\|2098604_2099375_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
AXD33240.1\|2100022_2100823_-	hypothetical protein	NA	NA	NA	NA
AXD35881.1\|2101767_2102622_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	2.7e-73	50.9
AXD35882.1\|2102681_2103176_-	RecE	A0A0U2I1R6	Escherichia_phage	8.2e-22	68.9
AXD33241.1\|2103365_2103596_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	6.1e-28	93.7
AXD33242.1\|2103649_2104183_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.4e-11	48.3
AXD33243.1\|2104439_2104607_-	lytic enzyme	NA	NA	NA	NA
AXD33244.1\|2104671_2104860_-	hypothetical protein	NA	NA	NA	NA
AXD35883.1\|2105332_2106214_+\|tail	phage tail protein	A0A0M4RTP2	Salmonella_phage	2.2e-65	76.0
AXD33245.1\|2106310_2106511_-	phage virulence factor	NA	NA	NA	NA
AXD33246.1\|2106701_2106818_-\|tail	phage tail protein	NA	NA	NA	NA
AXD33247.1\|2107080_2107206_+	arsenic transporter	NA	NA	NA	NA
AXD33248.1\|2107334_2107601_+	hypothetical protein	NA	NA	NA	NA
AXD33249.1\|2108353_2108968_-	disulfide bond formation protein B	NA	NA	NA	NA
AXD33250.1\|2108977_2109136_-	hypothetical protein	NA	NA	NA	NA
AXD33251.1\|2109268_2110183_-	protein PagO	NA	NA	NA	NA
AXD35884.1\|2110800_2111001_+	hypothetical protein	NA	NA	NA	NA
AXD33252.1\|2113310_2113451_-	hypothetical protein	NA	NA	NA	NA
AXD33253.1\|2114257_2114677_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXD33254.1\|2115063_2115540_-	hypothetical protein	NA	NA	NA	NA
AXD33255.1\|2116957_2117680_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
AXD33256.1\|2117964_2118129_+	hypothetical protein	NA	NA	NA	NA
AXD33257.1\|2118352_2119003_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	6.5e-59	51.4
AXD33258.1\|2119021_2119213_-	DUF1482 family protein	NA	NA	NA	NA
AXD33259.1\|2119323_2119563_-	DUF1480 family protein	NA	NA	NA	NA
AXD35885.1\|2119677_2121117_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AXD33260.1\|2121194_2123834_-	MCE family protein	NA	NA	NA	NA
AXD33261.1\|2123796_2125080_-	paraquat-inducible protein A	NA	NA	NA	NA
2124164:2124179	attR	NA	NA	NA	NA
AXD33262.1\|2125121_2125706_+	GAF domain-containing protein	NA	NA	NA	NA
AXD33263.1\|2125803_2126490_+	RNA chaperone ProQ	NA	NA	NA	NA
AXD33264.1\|2126509_2128558_+\|tail,protease	tail-specific protease	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
AXD33265.1\|2128751_2129633_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_5

2445301 : 2540322

112

Escherichia_phage(32.73%)

plate,integrase,head,portal,holin,tail,terminase,tRNA,capsid

attL 2515342:2515357|attR 2536042:2536057

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD33562.1\|2445301_2446381_-\|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
AXD33563.1\|2446563_2447052_-	MarR family transcriptional regulator	NA	NA	NA	NA
AXD33564.1\|2447096_2448605_+	hypothetical protein	NA	NA	NA	NA
AXD33565.1\|2448594_2449836_+	MFS transporter	NA	NA	NA	NA
AXD33566.1\|2449905_2451462_+	PhoPQ-regulated protein	NA	NA	NA	NA
AXD33567.1\|2451638_2452925_+	MFS transporter	NA	NA	NA	NA
AXD33568.1\|2452899_2453925_+	alcohol dehydrogenase	NA	NA	NA	NA
AXD33569.1\|2453983_2454775_-	FadR family transcriptional regulator	NA	NA	NA	NA
AXD33570.1\|2454820_2455912_-	linear amide C-N hydrolase	NA	NA	NA	NA
AXD33571.1\|2456339_2457443_+	uptake hydrogenase small subunit	NA	NA	NA	NA
AXD33572.1\|2457445_2459248_+	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA
AXD33573.1\|2459198_2459942_+	Ni/Fe-hydrogenase, b-type cytochrome subunit	NA	NA	NA	NA
AXD33574.1\|2459947_2460556_+	HyaD/HybD family hydrogenase maturation endopeptidase	NA	NA	NA	NA
AXD33575.1\|2460555_2460855_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA
AXD33576.1\|2460851_2461262_+	hydrogenase	NA	NA	NA	NA
AXD33577.1\|2461279_2462341_+	hydrogenase-1 operon protein HyaF2	NA	NA	NA	NA
AXD33578.1\|2462328_2463216_+	ATP/GTP-binding protein	NA	NA	NA	NA
AXD33579.1\|2463228_2463570_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
AXD33580.1\|2463699_2464818_-	porin	Q1MVN1	Enterobacteria_phage	1.6e-113	58.5
AXD33581.1\|2465534_2466077_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
AXD33582.1\|2466132_2467080_-	hypothetical protein	NA	NA	NA	NA
AXD33583.1\|2467302_2467662_-	DUF4186 domain-containing protein	NA	NA	NA	NA
AXD33584.1\|2467661_2468588_-	glutaminase	NA	NA	NA	NA
AXD33585.1\|2468660_2470049_-	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
AXD33586.1\|2470151_2471024_+	LysR family transcriptional regulator	NA	NA	NA	NA
AXD33587.1\|2471139_2472330_+	sugar efflux transporter	NA	NA	NA	NA
AXD33588.1\|2472376_2473042_-	stress protection protein MarC	NA	NA	NA	NA
AXD33589.1\|2473300_2473735_+	MarR family transcriptional regulator	NA	NA	NA	NA
AXD33590.1\|2473703_2474138_+	MDR efflux pump AcrAB transcriptional activator MarA	D0R0F8	Streptococcus_phage	4.1e-09	32.3
AXD33591.1\|2474166_2474382_+	multiple antibiotic resistance regulatory periplasmic protein MarB	NA	NA	NA	NA
AXD33592.1\|2474500_2475403_-	O-acetylserine/cysteine exporter	NA	NA	NA	NA
AXD33593.1\|2475630_2476818_+	MFS transporter	NA	NA	NA	NA
AXD33594.1\|2477065_2477161_+	hypothetical protein	NA	NA	NA	NA
AXD33595.1\|2477509_2477902_-	TIGR00156 family protein	NA	NA	NA	NA
AXD33596.1\|2478328_2478856_+	2-oxo-tetronate isomerase	NA	NA	NA	NA
AXD33597.1\|2478976_2479159_-	stress-induced acidophilic repeat motif-containing protein	NA	NA	NA	NA
AXD33598.1\|2479503_2481546_-	peptidyl-dipeptidase Dcp	NA	NA	NA	NA
AXD33599.1\|2481684_2482431_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AXD33600.1\|2482560_2483247_+	GntR family transcriptional regulator	NA	NA	NA	NA
AXD33601.1\|2483427_2483631_+	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	2.9e-13	55.2
AXD33602.1\|2483697_2485164_-	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	2.5e-42	30.0
AXD33603.1\|2485307_2486603_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.1e-25	25.8
AXD33604.1\|2486824_2487397_-	DUF4376 domain-containing protein	Q8W610	Enterobacteria_phage	1.1e-73	74.5
AXD33605.1\|2487411_2489685_-\|tail	phage tail protein	A0A0U2SH60	Escherichia_phage	4.7e-104	60.1
AXD33606.1\|2489748_2490330_-\|tail	phage tail protein	A0A0M4RTP2	Salmonella_phage	5.8e-67	66.5
AXD33607.1\|2490329_2491400_-	hypothetical protein	A0A0M3ULH6	Salmonella_phage	2.0e-44	32.9
AXD33608.1\|2491403_2491958_-\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	1.5e-24	43.8
AXD33609.1\|2491960_2492866_-\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	5.0e-65	49.7
AXD33610.1\|2492849_2493203_-\|plate	baseplate assembly protein	V5YTB2	Pseudomonas_phage	2.2e-21	49.1
AXD33611.1\|2493205_2494309_-	late control protein D	D4HTW7	Vibrio_phage	5.5e-34	36.4
AXD33612.1\|2494317_2494533_-\|tail	phage tail protein	R9TR63	Vibrio_phage	1.1e-10	48.6
AXD33613.1\|2494507_2494987_-\|tail	phage tail protein	R9TMP6	Vibrio_phage	5.5e-23	42.0
AXD33614.1\|2494983_2496642_-	hypothetical protein	NA	NA	NA	NA
AXD33615.1\|2496744_2497044_-\|tail	phage tail assembly protein	NA	NA	NA	NA
AXD33616.1\|2497095_2497602_-\|tail	phage tail protein	NA	NA	NA	NA
AXD33617.1\|2497598_2499068_-\|tail	phage tail protein	R9TMQ0	Vibrio_phage	5.2e-72	36.8
AXD33618.1\|2499106_2499727_-\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	3.8e-16	38.4
AXD33619.1\|2499719_2500283_-	hypothetical protein	NA	NA	NA	NA
AXD33620.1\|2500297_2500978_-	hypothetical protein	A0A193GYC6	Enterobacter_phage	6.2e-12	29.1
AXD33621.1\|2500999_2501365_-	hypothetical protein	NA	NA	NA	NA
AXD33622.1\|2501357_2501735_-	hypothetical protein	NA	NA	NA	NA
AXD33623.1\|2501785_2502814_-\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	1.7e-109	58.7
AXD33624.1\|2502882_2503218_-\|head	head decoration protein	NA	NA	NA	NA
AXD33625.1\|2503257_2504874_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	1.1e-104	53.7
AXD35902.1\|2504863_2506387_-\|portal	phage portal protein	E4WL21	Enterobacteria_phage	1.2e-183	63.7
AXD33626.1\|2506431_2506641_-\|tail	phage tail protein	K7PM10	Enterobacteria_phage	1.0e-10	49.2
AXD33627.1\|2506644_2508561_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.3e-253	64.8
AXD33628.1\|2508532_2509039_-	DNA-packaging protein	O64316	Escherichia_phage	2.5e-34	49.4
AXD35903.1\|2509379_2509757_-	hypothetical protein	Q6UAR9	Klebsiella_phage	7.9e-41	65.4
AXD33629.1\|2509948_2510131_-	hypothetical protein	NA	NA	NA	NA
AXD33630.1\|2510561_2511107_-	hypothetical protein	A0A0U2S643	Escherichia_phage	1.3e-89	83.4
AXD33631.1\|2511103_2511385_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.3e-16	49.4
AXD33632.1\|2511374_2511764_-\|holin	holin	Q9MBZ5	Enterobacteria_phage	2.1e-36	63.1
AXD33633.1\|2511858_2512791_-	site-specific DNA-methyltransferase	A0A088FRS2	Escherichia_phage	1.4e-99	58.1
AXD33634.1\|2514379_2514847_+	hypothetical protein	NA	NA	NA	NA
AXD33635.1\|2514937_2515324_-	antitermination protein	Q777W5	Enterobacteria_phage	2.5e-58	83.9
AXD33636.1\|2515313_2515691_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	6.9e-37	63.7
2515342:2515357	attL	NA	NA	NA	NA
AXD33637.1\|2515691_2516747_-	hypothetical protein	A0A291AWV9	Escherichia_phage	1.7e-93	50.4
AXD33638.1\|2516748_2517027_-	hypothetical protein	NA	NA	NA	NA
AXD33639.1\|2517612_2517825_-	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	1.7e-29	97.1
AXD33640.1\|2518027_2518582_-	ORF6N domain-containing protein	Q8VNP5	Enterobacteria_phage	2.6e-48	78.4
AXD33641.1\|2518910_2519168_+	type II toxin-antitoxin system ParD family antitoxin	A0A0N7C055	Escherichia_phage	1.5e-30	85.5
AXD33642.1\|2519173_2519473_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2R2Z2Y1	Escherichia_phage	3.2e-45	85.9
AXD33643.1\|2519677_2520073_-	hypothetical protein	A0A193GYM6	Enterobacter_phage	6.5e-38	62.3
AXD35904.1\|2520072_2520324_-	DUF551 domain-containing protein	K7PH57	Enterobacteria_phage	2.6e-08	41.2
AXD33644.1\|2520889_2521078_-	hypothetical protein	NA	NA	NA	NA
AXD33645.1\|2521082_2521517_-	ead/Ea22-like family protein	Q8HAA6	Salmonella_phage	2.0e-40	83.7
AXD33646.1\|2521513_2521828_-	hypothetical protein	A0A222YY67	Escherichia_phage	3.1e-51	84.5
AXD33647.1\|2521820_2522075_-	hypothetical protein	A0A0U2RK51	Escherichia_phage	1.4e-38	85.7
AXD33648.1\|2522067_2522349_-	DUF4752 family protein	A0A2I6TCB0	Escherichia_phage	1.4e-37	86.7
AXD33649.1\|2522345_2522636_-	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	4.8e-38	83.9
AXD33650.1\|2522632_2523028_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.2e-18	43.0
AXD33651.1\|2523282_2524116_-	helix-turn-helix domain-containing protein	Q8W642	Enterobacteria_phage	1.8e-32	62.2
AXD33652.1\|2524639_2524921_-	hypothetical protein	H6WRX5	Salmonella_phage	1.8e-10	45.6
AXD35905.1\|2525089_2525458_+	transcriptional regulator	NA	NA	NA	NA
AXD33653.1\|2525787_2526426_+	hypothetical protein	A0A2R2Z306	Escherichia_phage	3.7e-06	36.9
AXD33654.1\|2526426_2526636_-	hypothetical protein	NA	NA	NA	NA
AXD33655.1\|2527239_2528094_+	transcriptional regulator	A0A0P0ZE80	Stx2-converting_phage	1.1e-66	63.0
AXD33656.1\|2528139_2528361_+	cell division protein FtsZ	A0A0U2RTC4	Escherichia_phage	7.9e-33	83.6
AXD33657.1\|2528445_2528763_+	hypothetical protein	NA	NA	NA	NA
AXD33658.1\|2528784_2530959_+	exonuclease	S4TNL0	Salmonella_phage	6.7e-108	53.2
AXD35906.1\|2531031_2531283_+	DNA-binding protein	S4TND0	Salmonella_phage	2.2e-15	50.0
AXD33659.1\|2531317_2532592_+\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	8.1e-154	61.6
AXD33660.1\|2532620_2532728_-	transporter	NA	NA	NA	NA
AXD33661.1\|2532781_2533801_-	Zn-dependent oxidoreductase	NA	NA	NA	NA
AXD33662.1\|2533811_2535026_-	D-galactonate dehydratase family member RspA	Q6A202	Oenococcus_phage	2.0e-45	28.7
AXD33663.1\|2535147_2535474_-	YnfA family protein	A0A218MNG8	uncultured_virus	2.2e-23	52.9
AXD33664.1\|2535626_2535968_+	DUF1283 family protein	NA	NA	NA	NA
AXD33665.1\|2536003_2536564_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
2536042:2536057	attR	NA	NA	NA	NA
AXD33666.1\|2536604_2537315_-	YnfC family lipoprotein	NA	NA	NA	NA
AXD33667.1\|2537418_2537727_+	DUF1161 domain-containing protein	NA	NA	NA	NA
AXD33668.1\|2537883_2540322_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	9.5e-220	49.7

DBSCAN-SWA_6

2801590 : 2855392

Enterobacteria_phage(44.0%)

plate,integrase,head,portal,holin,tail,terminase,tRNA,capsid,protease

attL 2824681:2824697|attR 2858809:2858825

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD33935.1\|2801590_2802697_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
AXD35919.1\|2802783_2803425_+	lysogenization protein HflD	NA	NA	NA	NA
AXD33936.1\|2803428_2804799_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.1e-108	45.3
AXD33937.1\|2804922_2805597_+	two-component system response regulator PhoP	NA	NA	NA	NA
AXD33938.1\|2805596_2807060_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
AXD33939.1\|2807140_2808262_+	cupin domain-containing protein	NA	NA	NA	NA
AXD33940.1\|2808301_2809636_-	hypothetical protein	NA	NA	NA	NA
AXD33941.1\|2809639_2810869_-	peptidase T	NA	NA	NA	NA
AXD33942.1\|2811119_2812256_+	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.1e-28	34.0
AXD33943.1\|2812239_2813103_+	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	2.0e-10	26.2
AXD33944.1\|2813321_2813894_-	DUF4376 domain-containing protein	A0A0U2QQK4	Escherichia_phage	4.0e-68	67.6
AXD33945.1\|2813908_2816182_-\|tail	phage tail protein	A0A0U2SH60	Escherichia_phage	4.7e-104	60.1
AXD33946.1\|2816245_2816827_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.5e-67	66.5
AXD33947.1\|2816826_2817702_-	hypothetical protein	E5G6P0	Salmonella_phage	6.5e-38	63.1
AXD33948.1\|2817688_2818279_-\|tail	phage tail protein	Q8W614	Enterobacteria_phage	8.7e-111	95.9
AXD33949.1\|2818278_2819361_-\|plate	phage baseplate protein	Q8W615	Enterobacteria_phage	2.2e-200	95.8
AXD33950.1\|2819353_2819767_-	hypothetical protein	Q8W616	Enterobacteria_phage	7.0e-67	91.2
AXD33951.1\|2819772_2820306_-\|plate	baseplate assembly protein	Q8W617	Enterobacteria_phage	1.3e-84	88.6
AXD33952.1\|2820305_2821361_-\|plate	baseplate protein	Q8W618	Enterobacteria_phage	5.0e-194	96.9
AXD33953.1\|2821357_2822749_-	DNA circularization protein	Q8W619	Enterobacteria_phage	4.0e-247	95.9
AXD33954.1\|2822794_2823277_-	hypothetical protein	NA	NA	NA	NA
AXD33955.1\|2823344_2825219_-\|tail	phage tail tape measure protein	Q8W620	Enterobacteria_phage	1.2e-249	75.0
2824681:2824697	attL	NA	NA	NA	NA
AXD33956.1\|2825303_2825633_-\|tail	phage tail assembly protein	Q8W621	Enterobacteria_phage	2.5e-43	84.4
AXD33957.1\|2825632_2825989_-\|tail	phage tail protein	Q8W622	Enterobacteria_phage	7.2e-60	93.2
AXD33958.1\|2825988_2827485_-\|tail	phage tail protein	Q8W623	Enterobacteria_phage	2.9e-272	97.0
AXD33959.1\|2827481_2827643_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	5.4e-15	76.6
AXD33960.1\|2827646_2828216_-	hypothetical protein	Q8W624	Enterobacteria_phage	1.3e-98	90.9
AXD33961.1\|2828212_2828737_-	hypothetical protein	Q8W625	Enterobacteria_phage	5.5e-93	97.1
AXD33962.1\|2828702_2829119_-\|head,tail	head-tail adaptor protein	Q8HAC9	Salmonella_phage	3.1e-46	69.9
AXD33963.1\|2829115_2829439_-\|head,tail	phage gp6-like head-tail connector protein	Q8W626	Enterobacteria_phage	9.4e-51	89.7
AXD33964.1\|2829493_2830711_-\|capsid	phage major capsid protein	Q8W627	Enterobacteria_phage	9.9e-194	92.3
AXD33965.1\|2830722_2831373_-\|head,protease	HK97 family phage prohead protease	Q8W628	Enterobacteria_phage	2.5e-119	98.6
AXD33966.1\|2831350_2832592_-\|portal	phage portal protein	Q8W629	Enterobacteria_phage	2.7e-223	90.6
AXD33967.1\|2832591_2832774_-	hypothetical protein	M1FJ83	Enterobacteria_phage	2.2e-17	73.3
AXD33968.1\|2832785_2834543_-\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	99.1
AXD33969.1\|2834542_2835025_-\|terminase	phage terminase small subunit P27 family	A0A1B5FPA0	Escherichia_phage	4.8e-83	95.0
AXD33970.1\|2835172_2835523_-	HNH endonuclease	Q8W633	Enterobacteria_phage	4.4e-62	96.5
AXD33971.1\|2835491_2835839_-	hypothetical protein	NA	NA	NA	NA
AXD35920.1\|2835917_2836295_-	hypothetical protein	Q6UAR9	Klebsiella_phage	2.7e-41	66.1
AXD33972.1\|2836485_2836668_-	hypothetical protein	NA	NA	NA	NA
AXD33973.1\|2836664_2837210_-	hypothetical protein	A0A0U2S643	Escherichia_phage	1.0e-89	84.0
AXD33974.1\|2837206_2837488_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.3e-16	49.4
AXD33975.1\|2837477_2837867_-\|holin	holin	Q9MBZ5	Enterobacteria_phage	2.1e-36	63.1
AXD33976.1\|2837959_2838112_-	DUF3927 domain-containing protein	S4TRP5	Salmonella_phage	2.3e-07	58.7
AXD33977.1\|2838108_2838534_-	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	2.3e-60	87.2
AXD33978.1\|2840194_2840740_+	hypothetical protein	NA	NA	NA	NA
AXD35921.1\|2840779_2841337_-	ORF6N domain-containing protein	G9L689	Escherichia_phage	1.9e-43	69.0
AXD33979.1\|2841617_2842004_-	antitermination protein	A0A088CD47	Shigella_phage	5.9e-60	87.1
AXD33980.1\|2841993_2842356_-	hypothetical protein	A5VW85	Enterobacteria_phage	7.8e-38	65.8
AXD33981.1\|2842367_2843411_-	hypothetical protein	A0A291AWV9	Escherichia_phage	2.3e-114	57.8
AXD33982.1\|2843412_2843613_-	hypothetical protein	K7PJT9	Enterobacteria_phage	3.2e-17	60.0
AXD33983.1\|2843776_2843971_-	hypothetical protein	NA	NA	NA	NA
AXD33984.1\|2844261_2844417_-	type I toxin-antitoxin system hok family toxin	A0A0U2QV81	Escherichia_phage	5.0e-18	98.0
AXD35922.1\|2844706_2845207_-	DUF551 domain-containing protein	A0A0P0ZD75	Stx2-converting_phage	1.5e-31	85.3
AXD33985.1\|2845517_2845706_-	hypothetical protein	NA	NA	NA	NA
AXD33986.1\|2845710_2846097_-	ead/Ea22-like family protein	K7PJQ4	Enterobacteria_phage	1.6e-33	82.4
AXD33987.1\|2846089_2846890_-	hypothetical protein	A0A0U2SAW4	Escherichia_phage	1.1e-113	86.2
AXD33988.1\|2846861_2847608_-	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	1.8e-113	80.1
AXD33989.1\|2847614_2848580_-	hypothetical protein	U5P0A0	Shigella_phage	1.6e-58	63.6
AXD33990.1\|2848576_2848870_-	hypothetical protein	NA	NA	NA	NA
AXD33991.1\|2848891_2849317_-	Rha family transcriptional regulator	NA	NA	NA	NA
AXD33992.1\|2849300_2849528_-	transcriptional regulator	NA	NA	NA	NA
AXD33993.1\|2849554_2850007_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	3.0e-26	50.4
AXD35923.1\|2850201_2850330_+	hypothetical protein	NA	NA	NA	NA
AXD33994.1\|2850329_2850527_+	hypothetical protein	NA	NA	NA	NA
AXD35924.1\|2850471_2850651_-	hypothetical protein	NA	NA	NA	NA
AXD33995.1\|2851148_2851370_+	cell division protein FtsZ	A0A0U2RTC4	Escherichia_phage	7.9e-33	83.6
AXD33996.1\|2851794_2852517_+	exodeoxyribonuclease	A0A088CD28	Shigella_phage	9.5e-35	39.5
AXD33997.1\|2854035_2854299_+	excisionase	NA	NA	NA	NA
AXD33998.1\|2854273_2855392_+\|integrase	integrase	Q77Z04	Phage_21	5.0e-83	44.2
2858809:2858825	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4457093 : 4504076

Burkholderia_phage(40.91%)

plate,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD35429.1\|4457093_4458092_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
AXD35430.1\|4458179_4459490_-	conjugal transfer protein	NA	NA	NA	NA
AXD35431.1\|4459736_4460252_+	transcriptional regulator Zur	NA	NA	NA	NA
AXD35432.1\|4460351_4460561_-	CsbD family protein	NA	NA	NA	NA
AXD35981.1\|4460582_4460696_-	hypothetical protein	NA	NA	NA	NA
AXD35433.1\|4460692_4462018_-	MATE family efflux transporter DinF	NA	NA	NA	NA
AXD35434.1\|4462196_4462805_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
AXD35435.1\|4462913_4463282_-	diacylglycerol kinase	NA	NA	NA	NA
AXD35436.1\|4463452_4465873_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA
AXD35437.1\|4465971_4466844_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
AXD35438.1\|4466857_4467355_-	chorismate--pyruvate lyase	NA	NA	NA	NA
AXD35439.1\|4467535_4468453_-	maltose operon protein MalM	NA	NA	NA	NA
AXD35440.1\|4468616_4469975_-	maltoporin	NA	NA	NA	NA
AXD35441.1\|4470063_4471173_-	maltose/maltodextrin import ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
AXD35442.1\|4471534_4472725_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
AXD35443.1\|4472856_4474401_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
AXD35444.1\|4474415_4475306_+	maltose ABC transporter permease	NA	NA	NA	NA
AXD35445.1\|4475471_4475882_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
AXD35446.1\|4476024_4478121_-	YjbH domain-containing protein	NA	NA	NA	NA
AXD35447.1\|4478120_4478858_-	hypothetical protein	NA	NA	NA	NA
AXD35448.1\|4478854_4479493_-	YjbF family lipoprotein	NA	NA	NA	NA
AXD35449.1\|4479556_4479799_-	outer membrane protein	NA	NA	NA	NA
AXD35450.1\|4480242_4481892_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
AXD35451.1\|4482236_4483586_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
AXD35452.1\|4483716_4484064_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
AXD35453.1\|4484643_4484931_+	hypothetical protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
AXD35454.1\|4484933_4485539_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	4.2e-60	59.4
AXD35455.1\|4485551_4485866_+	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
AXD35456.1\|4486025_4486481_+	hypothetical protein	NA	NA	NA	NA
AXD35457.1\|4486477_4486675_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
AXD35458.1\|4486664_4488092_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.4e-194	70.9
AXD35459.1\|4488091_4488616_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
AXD35460.1\|4488667_4488985_+\|tail	phage tail assembly protein	NA	NA	NA	NA
AXD35461.1\|4488944_4489073_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
AXD35462.1\|4489169_4491536_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	7.4e-68	31.7
AXD35463.1\|4491535_4492489_+	chemotaxis protein	A4JWL1	Burkholderia_virus	7.9e-37	51.5
AXD35464.1\|4492488_4492698_+	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
AXD35465.1\|4492685_4493729_+	phage protein D	Q6QIA2	Burkholderia_phage	1.1e-76	45.3
AXD35466.1\|4493738_4494461_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
AXD35467.1\|4494469_4494709_+	hypothetical protein	NA	NA	NA	NA
AXD35468.1\|4494784_4495147_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
AXD35469.1\|4495143_4496073_+	glycosyltransferase	S5FKN0	Shigella_phage	2.6e-149	83.4
AXD35470.1\|4496072_4497620_+	hypothetical protein	B9UDL6	Salmonella_phage	1.5e-48	29.9
AXD35471.1\|4497783_4498143_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
AXD35472.1\|4498133_4499249_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.2e-100	52.2
AXD35473.1\|4499241_4499874_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
AXD35474.1\|4499876_4501535_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	2.3e-52	52.7
AXD35475.1\|4501541_4502156_+	DUF4376 domain-containing protein	NA	NA	NA	NA
AXD35476.1\|4502152_4502608_+	hypothetical protein	NA	NA	NA	NA
AXD35477.1\|4503347_4504076_+	hypothetical protein	A0A077SLK3	Escherichia_phage	1.9e-35	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP030196

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection