CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP030184	Salmonella enterica strain SA20030575 plasmid pSA20030575.3, complete sequence	0 crisprs	NA	0	0
CP030183	Salmonella enterica strain SA20030575 plasmid pSA20030575.2, complete sequence	0 crisprs	NA	0	1
CP030181	Salmonella enterica strain SA20030575 chromosome, complete genome	2 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	22	5
CP030182	Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence	0 crisprs	csa3	0	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 93861

105

Escherichia_phage(61.54%)

head,plate,holin,portal,lysis,terminase,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD16996.1\|0_861_+	replication protein RepA	Q71TL8	Escherichia_phage	4.7e-158	100.0
AXD16997.1\|1260_2466_+	ParA family protein	Q1MVJ3	Enterobacteria_phage	2.0e-226	100.0
AXD16998.1\|2462_3428_+	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	1.7e-167	99.4
AXD16999.1\|3694_5401_+	hypothetical protein	Q71TM1	Escherichia_phage	0.0e+00	99.8
AXD17000.1\|5461_7051_+	hypothetical protein	Q1MVJ6	Enterobacteria_phage	1.9e-306	100.0
AXD17001.1\|7060_7876_+	hypothetical protein	A0A1B0V835	Salmonella_phage	6.4e-112	98.9
AXD17002.1\|7911_8493_+	hypothetical protein	Q1MVJ8	Enterobacteria_phage	7.3e-102	97.4
AXD17003.1\|8504_9014_+\|plate	baseplate protein	Q1MVJ9	Enterobacteria_phage	1.3e-91	100.0
AXD17004.1\|9130_9286_-	type I toxin-antitoxin system hok family toxin	A0A1I9LJU7	Stx_converting_phage	3.4e-14	88.2
AXD17094.1\|9467_9713_-	hypothetical protein	A0A1B0VDM5	Salmonella_phage	3.5e-13	45.0
AXD17005.1\|9763_10609_-	Replication protein repL	Q1MVK3	Enterobacteria_phage	3.8e-152	99.3
AXD17006.1\|10638_11439_-	DNA-binding protein	Q1MVK4	Enterobacteria_phage	1.9e-148	100.0
AXD17007.1\|11602_12646_-	phage antirepressor Ant	Q71TN2	Escherichia_phage	5.4e-172	92.8
AXD17008.1\|12642_12864_-	host cell division inhibitor Icd-like protein	Q38557	Escherichia_phage	3.6e-38	97.3
AXD17009.1\|12897_13068_-	transcriptional regulator	NA	NA	NA	NA
AXD17010.1\|13444_13762_+	hypothetical protein	Q71TC5	Escherichia_phage	2.9e-28	100.0
AXD17011.1\|13769_14549_+	hypothetical protein	Q71TC6	Escherichia_phage	3.6e-149	99.6
AXD17012.1\|14759_15326_+	hypothetical protein	A0A077SK12	Escherichia_phage	4.3e-99	98.4
AXD17013.1\|15336_15948_+\|tail	phage tail protein	Q71TN8	Escherichia_phage	8.4e-109	99.0
AXD17014.1\|15962_16844_+	morphogenetic protein	A0A1B0VBL3	Salmonella_phage	3.7e-174	99.7
AXD17015.1\|16925_20348_+	lytic transglycosylase domain-containing protein	A0A077SK38	Escherichia_phage	0.0e+00	96.1
AXD17016.1\|20347_20704_+	hypothetical protein	Q71TP1	Escherichia_phage	1.0e-61	100.0
AXD17017.1\|20700_22134_+	bleomycin hydrolase	A0A1B0VAD6	Salmonella_phage	3.7e-272	100.0
AXD17018.1\|22133_22970_+\|tail	phage tail protein	A0A077SLH5	Escherichia_phage	5.8e-153	99.3
AXD17019.1\|23048_23483_+\|tail	phage tail protein	A0A077SLL3	Escherichia_phage	9.6e-75	99.3
AXD17020.1\|23494_26413_+\|tail	phage tail protein	Q1MVL8	Enterobacteria_phage	0.0e+00	90.4
AXD17021.1\|26415_26949_+\|tail	tail fiber assembly protein	A0A077SL44	Escherichia_phage	3.2e-96	99.4
AXD17095.1\|26977_27505_-\|tail	tail fiber assembly protein	A0A077SK10	Escherichia_phage	9.5e-93	98.3
AXD17022.1\|27508_29440_-\|tail	phage tail protein	A0A077SLH1	Escherichia_phage	1.1e-191	88.6
AXD17023.1\|29487_30048_-	DNA-invertase	Q71TD8	Escherichia_phage	2.1e-98	100.0
AXD17024.1\|30175_30457_+	hypothetical protein	Q71TD9	Escherichia_phage	8.7e-45	97.8
AXD17025.1\|30524_30854_+\|holin	holin	Q37876	Escherichia_phage	1.3e-52	100.0
AXD17026.1\|30850_31294_+\|lysis	lysis protein	A0A077SK09	Escherichia_phage	1.3e-82	100.0
AXD17027.1\|31280_31883_+	odaE	Q1MVM6	Enterobacteria_phage	1.6e-99	99.5
AXD17028.1\|31884_33804_+	hypothetical protein	A0A1B0V7H1	Salmonella_phage	0.0e+00	98.7
AXD17029.1\|33800_34166_+	ddrA	Q1MVM8	Enterobacteria_phage	5.1e-45	98.3
AXD17030.1\|34178_37166_+	hypothetical protein	A0A1B0VFX4	Salmonella_phage	0.0e+00	99.2
AXD17031.1\|37155_37467_+	hypothetical protein	A0A077SLG5	Escherichia_phage	1.8e-46	100.0
AXD17032.1\|37496_38285_-	hypothetical protein	Q71TF1	Escherichia_phage	8.2e-141	95.4
AXD17096.1\|38291_38969_-	DUF2829 domain-containing protein	A0A1B0VBT1	Salmonella_phage	2.6e-127	99.1
AXD17033.1\|39166_39655_-	single-stranded DNA-binding protein	A0A1B0VAF5	Salmonella_phage	5.0e-88	100.0
AXD17097.1\|39824_40382_+	lysozyme	Q71TF3	Escherichia_phage	2.1e-106	99.5
AXD17034.1\|40517_40694_+\|holin	antiholin	Q71TR5	Escherichia_phage	1.5e-26	91.4
AXD17035.1\|40673_41693_-\|head	head processing protein	Q71TR6	Escherichia_phage	2.1e-184	99.4
AXD17036.1\|41685_43395_-\|portal	phage portal protein	A0A1B0V850	Salmonella_phage	0.0e+00	99.1
AXD17037.1\|43471_50239_+	helicase	Q1MVN7	Enterobacteria_phage	0.0e+00	98.8
AXD17038.1\|50272_50713_+	peptide-binding protein	A0A077SLF0	Escherichia_phage	1.7e-79	100.0
AXD17039.1\|50709_50958_+	modulator protein	Q71TG0	Escherichia_phage	1.8e-41	100.0
AXD17098.1\|51103_53050_+	site-specific DNA-methyltransferase	Q1MVP0	Enterobacteria_phage	0.0e+00	99.8
AXD17040.1\|53052_55965_+	type III restriction-modification system endonuclease	Q71TG1	Escherichia_phage	0.0e+00	99.8
AXD17041.1\|56040_56682_-	maturation control protein	Q71TG2	Escherichia_phage	5.2e-117	100.0
AXD17042.1\|56871_57432_-	recombinase	Q71TG3	Escherichia_phage	5.5e-99	96.8
AXD17043.1\|57680_57992_-	lysogeny establishment protein	Q5XLQ4	Enterobacteria_phage	1.6e-47	100.0
AXD17044.1\|58042_59074_-	recombinase	A0A077SLE7	Escherichia_phage	3.2e-193	99.1
AXD17045.1\|59716_59827_+	peptidase	Q5XLQ7	Enterobacteria_phage	1.3e-12	97.2
AXD17046.1\|59848_59944_+	peptidase	Q38402	Escherichia_phage	2.8e-11	100.0
AXD17047.1\|59909_60119_+	c1 repressor inactivator	Q5XLQ8	Enterobacteria_phage	4.8e-32	100.0
AXD17048.1\|60229_61081_+	hypothetical protein	A0A077SLM8	Escherichia_phage	6.1e-158	99.6
AXD17049.1\|61105_62590_-\|terminase	terminase	Q71T61	Escherichia_phage	1.5e-292	100.0
AXD17050.1\|62589_63783_-\|terminase	terminase	Q5QBP3	Enterobacteria_phage	3.5e-199	95.7
AXD17051.1\|63869_64322_-	Late promoter-activating protein	Q71T63	Escherichia_phage	6.7e-79	99.3
AXD17052.1\|64410_65454_-	hypothetical protein	A0A1B0VBU2	Salmonella_phage	3.3e-206	99.4
AXD17053.1\|65481_65661_-	PdcA protein	Q71TH5	Escherichia_phage	7.8e-23	94.9
AXD17054.1\|65665_66046_-	type II toxin-antitoxin system death-on-curing family toxin	Q71T66	Escherichia_phage	1.9e-63	100.0
AXD17055.1\|66045_66267_-	type II toxin-antitoxin system prevent-host-death family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
AXD17056.1\|66339_66729_-	DNA repair protein	A0A077SK24	Escherichia_phage	6.4e-70	99.2
AXD17057.1\|66852_67104_-	DNA polymerase III subunit theta	A0A077SLL5	Escherichia_phage	1.4e-38	100.0
AXD17099.1\|67277_67487_+	hypothetical protein	A0A222YY00	Escherichia_phage	1.1e-31	98.6
AXD17058.1\|67471_67756_-	antitoxin PHD	A0A222YXZ5	Escherichia_phage	2.4e-05	100.0
AXD17059.1\|67739_68390_-	hypothetical protein	A0A077SK55	Escherichia_phage	4.9e-99	96.7
AXD17060.1\|68371_68746_-	hypothetical protein	A0A1B0VBU7	Salmonella_phage	4.9e-67	97.6
AXD17061.1\|68752_69046_-	hypothetical protein	A0A077SK23	Escherichia_phage	1.6e-44	91.8
AXD17062.1\|69224_69458_-	hypothetical protein	A0A1B0V7L5	Salmonella_phage	7.3e-37	98.7
AXD17063.1\|69543_69804_-	eaa protein	A0A077SLR0	Escherichia_phage	7.1e-41	96.5
AXD17100.1\|69800_71036_-	hypothetical protein	Q1MVF7	Enterobacteria_phage	9.7e-104	71.2
AXD17064.1\|71242_71722_-	ead/Ea22-like family protein	A5VWB3	Enterobacteria_phage	3.2e-47	90.9
AXD17065.1\|71718_72417_-	ead/Ea22-like family protein	E7C9P6	Salmonella_phage	5.0e-41	58.0
AXD17066.1\|72633_73140_-	3'-phosphatase	A0A1B0VAK0	Salmonella_phage	9.1e-93	98.8
AXD17067.1\|73212_74475_-	hypothetical protein	Q71TI8	Escherichia_phage	4.6e-234	99.5
AXD17068.1\|74476_74695_-	hypothetical protein	Q71TI9	Escherichia_phage	3.4e-36	100.0
AXD17069.1\|74776_75478_-	hypothetical protein	Q1MVG6	Enterobacteria_phage	1.6e-143	99.1
AXD17070.1\|75474_76152_-	serine/threonine protein phosphatase	A0A077SLQ6	Escherichia_phage	7.6e-135	100.0
AXD17071.1\|76148_76775_-	norphogenetic protein	A0A077SK52	Escherichia_phage	2.3e-122	99.0
AXD17072.1\|76672_77335_-	norphogenetic protein	Q71T83	Escherichia_phage	4.5e-124	100.0
AXD17073.1\|77276_77432_-	norphogenetic protein	A0A077SK20	Escherichia_phage	1.2e-19	100.0
AXD17074.1\|77498_78077_-	VRR-NUC domain-containing protein	A0A077SLK0	Escherichia_phage	2.0e-107	99.5
AXD17075.1\|78079_78325_-	hypothetical protein	Q71T86	Escherichia_phage	5.7e-40	100.0
AXD17076.1\|78471_78849_+	hypothetical protein	Q38620	Escherichia_phage	2.2e-67	100.0
AXD17077.1\|78858_80076_+\|tail	phage tail protein	A0A077SL53	Escherichia_phage	1.2e-223	99.8
AXD17078.1\|80079_80808_+\|tail	phage tail protein	Q71TJ9	Escherichia_phage	4.2e-139	100.0
AXD17079.1\|80794_81580_+\|plate	baseplate	A0A1B0V7N6	Salmonella_phage	2.1e-144	99.6
AXD17080.1\|81581_82598_+\|tail	phage tail tape measure protein	A0A077SLQ1	Escherichia_phage	2.3e-191	99.7
AXD17081.1\|82590_83223_+\|plate	baseplate protein	A0A077SK50	Escherichia_phage	6.9e-90	100.0
AXD17082.1\|83269_84268_-	hypothetical protein	A0A077SL52	Escherichia_phage	1.6e-194	99.7
AXD17083.1\|84267_85632_-	replicative DNA helicase	A0A1B0VG30	Salmonella_phage	1.2e-253	100.0
AXD17084.1\|86099_86264_-	DUF3927 domain-containing protein	A0A1B0VDU8	Salmonella_phage	1.2e-17	100.0
AXD17085.1\|86263_86689_-	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	1.8e-70	100.0
AXD17086.1\|86880_87072_+	hypothetical protein	Q71T98	Escherichia_phage	6.0e-29	100.0
AXD17087.1\|88134_90399_-	multidrug DMT transporter permease	A0A077SL51	Escherichia_phage	0.0e+00	68.4
AXD17088.1\|90395_91301_-	recombination-associated protein RdgC	A0A077SK17	Escherichia_phage	4.5e-159	99.3
AXD17089.1\|91293_91578_-	hypothetical protein	Q71TA2	Escherichia_phage	3.5e-49	100.0
AXD17090.1\|91852_92032_+	hypothetical protein	A0A1B0V758	Salmonella_phage	6.8e-27	98.3
AXD17091.1\|92040_92829_+	hypothetical protein	A0A1B0V830	Salmonella_phage	5.8e-110	91.6
AXD17092.1\|92868_93291_+	ppfA	Q71TL5	Escherichia_phage	5.0e-60	100.0
AXD17093.1\|93468_93861_+	hypothetical protein	A0A1B0VBK3	Salmonella_phage	9.9e-71	97.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP030181

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CRISPR-Cas detection and classification

Crispr_ID: CP030181_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030181_2

951221-952653

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

23 spacers

cas3

The CRISPR arrays of CP030181_2

>merge|CP030181|2|951221-952653|CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGACGATTTCGAACGCGTCAGCGGTCCTGACTACGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGGATCCGTCATCGGTCGTGGTTCACTGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTAAAATAATCTGACGCCGCCTTGATGACTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGACGCGTCGCTCGCGTCCGGCCAGCGTGCAGGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGACGCAGCTGATAGCGGATAACGTGTACGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTACAGGAAACATCCGGCGCGATATATACAAAGTGTTCCCCGCGTCAGCGGGGATAAACCGCGTATAACTATTTTGCGTTGTCGTGTGATTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGATGCGGAGAAAATGGAATCAGAGCTACAGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGATTTCATTATGTGCAACTCCTCGCCCGTGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTTCAGCGTGGAGCTGCATGATGTTCGCGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGAGGATGGAATATTTCCGAGGCTGGCGATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGAGGATGGAATATTTCCGAGGCTGGCGATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCCGATAGCGACGCTTCTGTAGTCACTGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTCCAATTAACCCAAACTTTGCGCGCTTAATATGTTCCCCGCGCTAGCGGGGATAAACCGGGATATGTGAAGTTCAGGTAGCCCATTACGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGATCGAGAGTGCGAAGAGGCAGAACGGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCGGGGATTTTGTGCCACCCAAAACGCTCGCGTGTTCCCCGCGTCAGCGGGGATAAACCGGAAGGATTACCACCCCGGCAGCGCTCACCCGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTTCTGGCGGGGGTAGGGAACGCCCAGAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGTTATGCGCAAAAATTAATTCATATTATAGTGTTCCCCGCGCCAGCAGGGATAAACCGGACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCGCTAGCGGGGATAAACCGCCGGATGAAAACGCCTACCCGGAAGACTACGAGTGTTCCCCGCGTCAGCGGGGGATAACCG

>CP030181|2|2|951221-952653|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGATTTCGAACGCGTCAGCGGTCCTGACTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGGATCCGTCATCGGTCGTGGTTCACTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAAAATAATCTGACGCCGCCTTGATGACTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCGTCGCTCGCGTCCGGCCAGCGTGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGACGCAGCTGATAGCGGATAACGTGTACGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTACAGGAAACATCCGGCGCGATATATACAAA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CGTATAACTATTTTGCGTTGTCGTGTGATTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGCGGAGAAAATGGAATCAGAGCTACAGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTTCATTATGTGCAACTCCTCGCCCGTGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTCAGCGTGGAGCTGCATGATGTTCGCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
ATGTTCCCCGCGCTAGCGGGGATAAACCG	GGATATGTGAAGTTCAGGTAGCCCATTACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCGGGGATTTTGTGCCACCCAAAACGCTCGC
GTGTTCCCCGCGTCAGCGGGGATAAACCG	GAAGGATTACCACCCCGGCAGCGCTCACCCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTCTGGCGGGGGTAGGGAACGCCCAGAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCGGATGAAAACGCCTACCCGGAAGACTACGA
GTGTTCCCCGCGTCAGCGGGGGATAACCG

>CP030181|2|1|951221-952653|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGATTTCGAACGCGTCAGCGGTCCTGACTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGGATCCGTCATCGGTCGTGGTTCACTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAAAATAATCTGACGCCGCCTTGATGACTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCGTCGCTCGCGTCCGGCCAGCGTGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGACGCAGCTGATAGCGGATAACGTGTACGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTACAGGAAACATCCGGCGCGATATATACAAA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CGTATAACTATTTTGCGTTGTCGTGTGATTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGCGGAGAAAATGGAATCAGAGCTACAGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTTCATTATGTGCAACTCCTCGCCCGTGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTCAGCGTGGAGCTGCATGATGTTCGCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
ATGTTCCCCGCGCTAGCGGGGATAAACCG	GGATATGTGAAGTTCAGGTAGCCCATTACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCGGGGATTTTGTGCCACCCAAAACGCTCGC
GTGTTCCCCGCGTCAGCGGGGATAAACCG	GAAGGATTACCACCCCGGCAGCGCTCACCCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTCTGGCGGGGGTAGGGAACGCCCAGAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCGGATGAAAACGCCTACCCGGAAGACTACGA
GTGTTCCCCGCGTCAGCGGGGGATAACCG

>CP030181|2|1|951282-952592|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGGATCCGTCATCGGTCGTGGTTCACTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAAAATAATCTGACGCCGCCTTGATGACTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCGTCGCTCGCGTCCGGCCAGCGTGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGACGCAGCTGATAGCGGATAACGTGTACGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTACAGGAAACATCCGGCGCGATATATACAAA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CGTATAACTATTTTGCGTTGTCGTGTGATTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGCGGAGAAAATGGAATCAGAGCTACAGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTTCATTATGTGCAACTCCTCGCCCGTGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTCAGCGTGGAGCTGCATGATGTTCGCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
ATGTTCCCCGCGCTAGCGGGGATAAACCG	GGATATGTGAAGTTCAGGTAGCCCATTACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCGGGGATTTTGTGCCACCCAAAACGCTCGC
GTGTTCCCCGCGTCAGCGGGGATAAACCG	GAAGGATTACCACCCCGGCAGCGCTCACCCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTCTGGCGGGGGTAGGGAACGCCCAGAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP030181.1\|AXD13068.1\|960393_963057_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP030181.1\|AXD13067.1\|958672_958915_-\|hypothetical-protein	unknown	unknown	unknown
CP030181.1\|AXD13061.1\|950252_950924_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP030181.1\|AXD13065.1\|956235_957948_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP030181.1\|AXD13059.1\|947098_948736_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP030181.1\|AXD16597.1\|958996_959950_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP030181.1\|AXD16596.1\|957904_958123_-\|hypothetical-protein	unknown	unknown	unknown
CP030181.1\|AXD13063.1\|953638_954001_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP030181.1\|AXD13062.1\|952751_953549_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP030181.1\|AXD13060.1\|948818_950117_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP030181.1\|AXD13053.1\|940300_940771_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
CP030181.1\|AXD13052.1\|939767_940304_-\|fimbrial-protein-SteF	unknown	unknown	gnl\|CDD\|185168
CP030181.1\|AXD13055.1\|941311_942085_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185177
CP030181.1\|AXD13066.1\|958049_958784_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP030181.1\|AXD13054.1\|940785_941292_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
CP030181.1\|AXD16595.1\|953929_954100_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP030181.1\|AXD13057.1\|944876_945464_-\|fimbrial-protein-SteA	unknown	unknown	gnl\|CDD\|185169
CP030181.1\|AXD13064.1\|954436_956236_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP030181.1\|AXD13056.1\|942097_944797_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
CP030181.1\|AXD13058.1\|946070_946871_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569

Protein	Function_ID	Function_description	E-value
CP030181.1\|AXD13068.1\|960393_963057_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP030181.1\|AXD13061.1\|950252_950924_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	5.23698e-155
CP030181.1\|AXD13065.1\|956235_957948_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP030181.1\|AXD13059.1\|947098_948736_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP030181.1\|AXD16597.1\|958996_959950_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP030181.1\|AXD13063.1\|953638_954001_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP030181.1\|AXD13062.1\|952751_953549_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.17666e-101
CP030181.1\|AXD13060.1\|948818_950117_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP030181.1\|AXD13053.1\|940300_940771_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.41178e-100
CP030181.1\|AXD13052.1\|939767_940304_-\|fimbrial-protein-SteF	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	1.00241e-120
CP030181.1\|AXD13055.1\|941311_942085_-\|fimbrial-protein	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
CP030181.1\|AXD13066.1\|958049_958784_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	4.08407e-139
CP030181.1\|AXD13054.1\|940785_941292_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
CP030181.1\|AXD13057.1\|944876_945464_-\|fimbrial-protein-SteA	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
CP030181.1\|AXD13064.1\|954436_956236_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP030181.1\|AXD13056.1\|942097_944797_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
CP030181.1\|AXD13058.1\|946070_946871_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.36327e-159

>CP030181.1|AXD13061.1|950252_950924_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLYSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP030181.1|AXD13060.1|948818_950117_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP030181.1|AXD13059.1|947098_948736_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP030181.1|AXD13058.1|946070_946871_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP030181.1|AXD13057.1|944876_945464_-|fimbrial-protein-SteA
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>CP030181.1|AXD13056.1|942097_944797_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSASPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINEQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>CP030181.1|AXD13055.1|941311_942085_-|fimbrial-protein
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>CP030181.1|AXD13054.1|940785_941292_-|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>CP030181.1|AXD13053.1|940300_940771_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>CP030181.1|AXD13052.1|939767_940304_-|fimbrial-protein-SteF
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFKLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ
>CP030181.1|AXD13062.1|952751_953549_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAAPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP030181.1|AXD13063.1|953638_954001_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP030181.1|AXD16595.1|953929_954100_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVWQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP030181.1|AXD13064.1|954436_956236_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGSVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVESYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLSRIALAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP030181.1|AXD13065.1|956235_957948_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITEPDILASLDQLIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP030181.1|AXD16596.1|957904_958123_-|hypothetical-protein
MVSANASTRSTFGRSFRAFRSSLDISSSRYTLPDGASLIRPTRAVGRIRHLCRHPAIQVIPRNHARDRAPGE
>CP030181.1|AXD13066.1|958049_958784_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNDLPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP030181.1|AXD13067.1|958672_958915_-|hypothetical-protein
MLLGTHSLAAFKQLELFWVYNQFKIRLPAGFFIAASIIIPRKDNYPSCSPHSRFSPKKRVSSSAIPGSHLRVVCVSPTDK
>CP030181.1|AXD16597.1|958996_959950_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP030181.1|AXD13068.1|960393_963057_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDEREMPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE

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Crispr_ID: CP030181_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030181_3

968940-970433

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

24 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP030181_3

>merge|CP030181|3|968940-970433|CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGGAAAACAAATAGATGGATTGCTCGATATCACGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCTCGGGTGAATCCAGGTAAATGCGGTTACCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGAATATTCAACTCCAGCGGGGGAAAGACGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGATATCGAACATTTGATGCGTATTGCGGGGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCGATTCATGCAGCGTGATTTCACATCCGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCGGATTTACCGTCGGCAAAACCGCGCTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTTTACGGGCGCGCGCCTCCTGCAGTTTTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCAGGCCATCCGGGCCCCCTGCGGTCATTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGCACGCCGGTGGCACTTACAGCAATATCATGTGTTCCCCGCGCCAGCGGGGATAAACCGCATTATCGGTTACCCCATCCTCACCGCCACTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCCTCACATCGGCGCCCGCTGGTCACGACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCCGTGACGCGGTTCGCACTGAGTTAGCCTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGACGTGCTCAACGAGTATCTGGTGATCCCGTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTCTTCGCGTTTTGTATCGTTGGCGGTTGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTGGGGGCGGCTGATTGATGATGCGGAGAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAAAATTTATGCCATGGGATAAGCACGCCGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAGTGTTAGCGCCGCTTTGGTGTGATTCTGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTGGCAGCATGATCGCTAAATCTAAAATGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTAGCCATCCCCATACCAAAGTTAAAGTCGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAAATATTCAACTGTATAGCGACACTACAAAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGGCTAATAGTACCAATTGTTATCAATCCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTAACGCGGCCAATAACGATTTTATTTGATAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCGCCGATCCGGTGGTGTCCAACACAACGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTGGGTTGCATAGATGACACGCTTATAAATAGTGTTCCCCGCGTCAGCGGGGATAAACAC

>CP030181|3|3|968940-970433|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAAACAAATAGATGGATTGCTCGATATCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCTCGGGTGAATCCAGGTAAATGCGGTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGAATATTCAACTCCAGCGGGGGAAAGACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGATATCGAACATTTGATGCGTATTGCGGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGATTCATGCAGCGTGATTTCACATCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCGGATTTACCGTCGGCAAAACCGCGCTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTTTACGGGCGCGCGCCTCCTGCAGTTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCAGGCCATCCGGGCCCCCTGCGGTCATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCACGCCGGTGGCACTTACAGCAATATCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTATCGGTTACCCCATCCTCACCGCCACTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCCTCACATCGGCGCCCGCTGGTCACGACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCGTGACGCGGTTCGCACTGAGTTAGCCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTGCTCAACGAGTATCTGGTGATCCCGTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCTTCGCGTTTTGTATCGTTGGCGGTTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGGGGGCGGCTGATTGATGATGCGGAGAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAATTTATGCCATGGGATAAGCACGCCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAGTGTTAGCGCCGCTTTGGTGTGATTCTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTGGCAGCATGATCGCTAAATCTAAAATGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAGCCATCCCCATACCAAAGTTAAAGTCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAATATTCAACTGTATAGCGACACTACAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGGCTAATAGTACCAATTGTTATCAATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTAACGCGGCCAATAACGATTTTATTTGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGCCGATCCGGTGGTGTCCAACACAACGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTGGGTTGCATAGATGACACGCTTATAAATA
GTGTTCCCCGCGTCAGCGGGGATAAACAC

>CP030181|3|2|968940-970433|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAAACAAATAGATGGATTGCTCGATATCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCTCGGGTGAATCCAGGTAAATGCGGTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGAATATTCAACTCCAGCGGGGGAAAGACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGATATCGAACATTTGATGCGTATTGCGGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGATTCATGCAGCGTGATTTCACATCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCGGATTTACCGTCGGCAAAACCGCGCTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTTTACGGGCGCGCGCCTCCTGCAGTTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCAGGCCATCCGGGCCCCCTGCGGTCATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCACGCCGGTGGCACTTACAGCAATATCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTATCGGTTACCCCATCCTCACCGCCACTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCCTCACATCGGCGCCCGCTGGTCACGACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCGTGACGCGGTTCGCACTGAGTTAGCCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTGCTCAACGAGTATCTGGTGATCCCGTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCTTCGCGTTTTGTATCGTTGGCGGTTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGGGGGCGGCTGATTGATGATGCGGAGAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAATTTATGCCATGGGATAAGCACGCCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAGTGTTAGCGCCGCTTTGGTGTGATTCTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTGGCAGCATGATCGCTAAATCTAAAATGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAGCCATCCCCATACCAAAGTTAAAGTCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAATATTCAACTGTATAGCGACACTACAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGGCTAATAGTACCAATTGTTATCAATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTAACGCGGCCAATAACGATTTTATTTGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGCCGATCCGGTGGTGTCCAACACAACGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTGGGTTGCATAGATGACACGCTTATAAATA
GTGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP030181.1\|AXD13081.1\|975258_975570_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP030181.1\|AXD13067.1\|958672_958915_-\|hypothetical-protein	unknown	unknown	unknown
CP030181.1\|AXD13072.1\|966255_967002_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP030181.1\|AXD13080.1\|974711_975068_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP030181.1\|AXD13076.1\|970447_971494_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP030181.1\|AXD13083.1\|976298_976778_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP030181.1\|AXD13084.1\|976774_977824_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP030181.1\|AXD13075.1\|968550_968844_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
CP030181.1\|AXD13071.1\|965186_966245_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP030181.1\|AXD13078.1\|972662_974102_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP030181.1\|AXD13073.1\|966983_967634_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187858
CP030181.1\|AXD13082.1\|975588_976299_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP030181.1\|AXD13077.1\|971744_972653_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP030181.1\|AXD13069.1\|963068_964628_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP030181.1\|AXD13079.1\|974088_974694_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP030181.1\|AXD13074.1\|967630_968551_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP030181.1\|AXD16597.1\|958996_959950_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP030181.1\|AXD13070.1\|964624_965173_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP030181.1\|AXD13068.1\|960393_963057_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP030181.1\|AXD13085.1\|977804_978566_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732

Protein	Function_ID	Function_description	E-value
CP030181.1\|AXD13081.1\|975258_975570_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP030181.1\|AXD13072.1\|966255_967002_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.10296e-48
CP030181.1\|AXD13080.1\|974711_975068_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP030181.1\|AXD13076.1\|970447_971494_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP030181.1\|AXD13083.1\|976298_976778_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP030181.1\|AXD13084.1\|976774_977824_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP030181.1\|AXD13075.1\|968550_968844_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.3037e-64
CP030181.1\|AXD13071.1\|965186_966245_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	7.78237e-138
CP030181.1\|AXD13078.1\|972662_974102_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP030181.1\|AXD13073.1\|966983_967634_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	2.11101e-74
CP030181.1\|AXD13082.1\|975588_976299_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.96864e-119
CP030181.1\|AXD13077.1\|971744_972653_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP030181.1\|AXD13069.1\|963068_964628_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	4.48049e-174
CP030181.1\|AXD13079.1\|974088_974694_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	3.2499e-145
CP030181.1\|AXD13074.1\|967630_968551_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	7.95508e-157
CP030181.1\|AXD16597.1\|958996_959950_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP030181.1\|AXD13070.1\|964624_965173_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.80691e-33
CP030181.1\|AXD13068.1\|960393_963057_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP030181.1\|AXD13085.1\|977804_978566_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146

>CP030181.1|AXD13075.1|968550_968844_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGCGNAVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP030181.1|AXD13074.1|967630_968551_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLINKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIKPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP030181.1|AXD13073.1|966983_967634_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASTIFDVQTRPFAPMLSAEQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLARQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>CP030181.1|AXD13072.1|966255_967002_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHDLPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLDGRAPDVLREAYRWYQDQFNTLKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP030181.1|AXD13071.1|965186_966245_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILIESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAEKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>CP030181.1|AXD13070.1|964624_965173_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKADWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKNPDELLRHLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>CP030181.1|AXD13069.1|963068_964628_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFATIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTEYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFANAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>CP030181.1|AXD13068.1|960393_963057_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDEREMPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP030181.1|AXD16597.1|958996_959950_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP030181.1|AXD13067.1|958672_958915_-|hypothetical-protein
MLLGTHSLAAFKQLELFWVYNQFKIRLPAGFFIAASIIIPRKDNYPSCSPHSRFSPKKRVSSSAIPGSHLRVVCVSPTDK
>CP030181.1|AXD13076.1|970447_971494_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKVEKTS
>CP030181.1|AXD13077.1|971744_972653_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP030181.1|AXD13078.1|972662_974102_+|sulfate-adenylyltransferase
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWHSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP030181.1|AXD13079.1|974088_974694_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHHRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP030181.1|AXD13080.1|974711_975068_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP030181.1|AXD13081.1|975258_975570_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP030181.1|AXD13082.1|975588_976299_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLADHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP030181.1|AXD13083.1|976298_976778_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP030181.1|AXD13084.1|976774_977824_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRISKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP030181.1|AXD13085.1|977804_978566_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030181_2	2.16\|952166\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	952166-952197	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
CP030181_2	2.16\|952166\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	952166-952197	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
CP030181_3	3.3\|969091\|32\|CP030181\|CRISPRCasFinder,CRT	969091-969122	32	NZ_CP039495	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 plasmid pCFSAN000669_2, complete sequence	16537-16568	2	0.938
CP030181_3	3.3\|969091\|32\|CP030181\|CRISPRCasFinder,CRT	969091-969122	32	KC139516	Salmonella phage FSL SP-016, partial genome	44540-44571	2	0.938
CP030181_3	3.3\|969091\|32\|CP030181\|CRISPRCasFinder,CRT	969091-969122	32	NC_042346	Salmonella virus BTP1 genome assembly, chromosome: BTP1	23602-23633	2	0.938
CP030181_3	3.11\|969579\|32\|CP030181\|CRISPRCasFinder,CRT	969579-969610	32	NZ_CP032813	Escherichia coli strain ERL03-1416 plasmid pERL03-1416-2, complete sequence	54708-54739	4	0.875
CP030181_2	2.2\|951311\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951311-951342	32	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1032808-1032839	7	0.781
CP030181_2	2.8\|951677\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951677-951708	32	MN693026	Marine virus AFVG_117M72, complete genome	24435-24466	7	0.781
CP030181_2	2.10\|951799\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951799-951830	32	NC_016767	Erwinia phage PEp14, complete genome	12046-12077	7	0.781
CP030181_2	2.20\|952410\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	952410-952441	32	NZ_CP021170	Paenibacillus bovis strain BD3526 plasmid unnamed1, complete sequence	47959-47990	7	0.781
CP030181_3	3.19\|970068\|32\|CP030181\|CRISPRCasFinder,CRT	970068-970099	32	KR093648	Moraxella phage Mcat24, complete genome	11348-11379	7	0.781
CP030181_3	3.19\|970068\|32\|CP030181\|CRISPRCasFinder,CRT	970068-970099	32	KR093648	Moraxella phage Mcat24, complete genome	11914-11945	7	0.781
CP030181_2	2.4\|951433\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951433-951464	32	NZ_LR134460	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence	60437-60468	8	0.75
CP030181_2	2.4\|951433\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951433-951464	32	NZ_AP014580	Burkholderia sp. RPE67 plasmid p2, complete sequence	360413-360444	8	0.75
CP030181_2	2.10\|951799\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951799-951830	32	NZ_CP025552	Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence	33549-33580	8	0.75
CP030181_2	2.11\|951860\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951860-951891	32	CP001770	Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence	145771-145802	8	0.75
CP030181_2	2.12\|951921\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951921-951952	32	CP001770	Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence	145771-145802	8	0.75
CP030181_3	3.6\|969274\|32\|CP030181\|CRISPRCasFinder,CRT	969274-969305	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	312409-312440	8	0.75
CP030181_3	3.15\|969824\|32\|CP030181\|CRISPRCasFinder,CRT	969824-969855	32	NZ_CP045296	Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence	287242-287273	8	0.75
CP030181_3	3.23\|970312\|32\|CP030181\|CRISPRCasFinder,CRT	970312-970343	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	713251-713282	8	0.75
CP030181_3	3.23\|970312\|32\|CP030181\|CRISPRCasFinder,CRT	970312-970343	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	712366-712397	8	0.75
CP030181_3	3.23\|970312\|32\|CP030181\|CRISPRCasFinder,CRT	970312-970343	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	713238-713269	8	0.75
CP030181_3	3.23\|970312\|32\|CP030181\|CRISPRCasFinder,CRT	970312-970343	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	713257-713288	8	0.75
CP030181_3	3.23\|970312\|32\|CP030181\|CRISPRCasFinder,CRT	970312-970343	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	713235-713266	8	0.75
CP030181_2	2.2\|951311\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951311-951342	32	AY986977	Xanthomonas campestris pv. pelargonii phage Xp15, complete genome	47238-47269	9	0.719
CP030181_2	2.2\|951311\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951311-951342	32	NC_007024	Xanthomonas phage Xp15, complete genome	47238-47269	9	0.719
CP030181_2	2.7\|951616\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951616-951647	32	NC_015905	Borreliella bissettii DN127 plasmid cp32-6, complete sequence	9532-9563	9	0.719
CP030181_2	2.7\|951616\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951616-951647	32	NC_015909	Borreliella bissettii DN127 plasmid cp32-5, complete sequence	9531-9562	9	0.719
CP030181_2	2.10\|951799\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951799-951830	32	NZ_MK036885	Leclercia adecarboxylata strain 16005813 plasmid p16005813C, complete sequence	56020-56051	9	0.719
CP030181_2	2.13\|951982\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951982-952013	32	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	45237-45268	9	0.719
CP030181_2	2.23\|952593\|32\|CP030181\|CRISPRCasFinder,CRT	952593-952624	32	NC_047851	Brevibacterium phage LuckyBarnes, complete genome	31262-31293	9	0.719
CP030181_3	3.5\|969213\|32\|CP030181\|CRISPRCasFinder,CRT	969213-969244	32	AP018399	Xanthomonas phage XacN1 DNA, complete genome	184880-184911	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MK761195	Salmonella phage SF4, complete genome	21294-21325	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MK761199	Salmonella phage SI2, complete genome	32559-32590	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MT074481	Salmonella phage sidste, complete genome	28769-28800	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MK761197	Salmonella phage SS4, complete genome	13374-13405	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MT677934	Salmonella phage NBSal007, complete genome	16757-16788	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MK972702	Salmonella phage SS5, complete genome	11333-11364	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MK759883	Salmonella phage vB_SenS_SB15, complete genome	22660-22691	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MK972706	Salmonella phage SS8, complete genome	3726-3757	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MK578530	Salmonella phage vB_SenS_SB3, complete genome	22681-22712	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MK931446	Salmonella phage Shelanagig, complete genome	23338-23369	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MK770409	Salmonella phage SF1, complete genome	8845-8876	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MK972703	Salmonella phage SS7, complete genome	9477-9508	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MK972700	Salmonella phage SS1, complete genome	9964-9995	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MK761196	Salmonella phage SF5, complete genome	26503-26534	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MK761198	Salmonella phage SS10, complete genome	32376-32407	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MF158037	Salmonella phage St162, complete genome	41350-41381	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MF158037	Salmonella phage St162, complete genome	41606-41637	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MK972691	Salmonella phage SI1, complete genome	19104-19135	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	NC_041991	Salmonella phage vB_SenS_AG11, complete genome	22623-22654	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MK972701	Salmonella phage SS6, complete genome	22270-22301	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	MK972705	Salmonella phage SF2, complete genome	14311-14342	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	216014-216045	9	0.719
CP030181_3	3.10\|969518\|32\|CP030181\|CRISPRCasFinder,CRT	969518-969549	32	KT962832	Salmonella phage fSE1C, complete genome	31784-31815	9	0.719
CP030181_3	3.13\|969702\|32\|CP030181\|CRISPRCasFinder,CRT	969702-969733	32	NZ_CP025513	Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence	192991-193022	9	0.719
CP030181_3	3.24\|970373\|32\|CP030181\|CRISPRCasFinder,CRT	970373-970404	32	NZ_MG266000	Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence	5501-5532	9	0.719
CP030181_2	2.2\|951311\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951311-951342	32	NZ_CP012101	Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence	271482-271513	10	0.688
CP030181_2	2.2\|951311\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951311-951342	32	NZ_CP020952	Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence	475651-475682	10	0.688
CP030181_2	2.2\|951311\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951311-951342	32	NZ_CP031072	Bacillus mycoides strain BPN401 plasmid pl395, complete sequence	119722-119753	10	0.688
CP030181_2	2.2\|951311\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951311-951342	32	NZ_CP020744	Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence	232616-232647	10	0.688
CP030181_2	2.2\|951311\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951311-951342	32	NC_018688	Bacillus thuringiensis MC28 plasmid pMC319, complete sequence	147891-147922	10	0.688
CP030181_2	2.2\|951311\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951311-951342	32	NZ_CP009691	Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence	163526-163557	10	0.688
CP030181_2	2.2\|951311\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	951311-951342	32	CP037991	Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence	422132-422163	10	0.688
CP030181_2	2.17\|952227\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	952227-952258	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
CP030181_2	2.20\|952410\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	952410-952441	32	NZ_KU254577	Pseudomonas aeruginosa strain HN39 plasmid pHN39-SIM, complete sequence	224438-224469	10	0.688
CP030181_2	2.20\|952410\|32\|CP030181\|CRISPRCasFinder,CRT,PILER-CR	952410-952441	32	NZ_CP010826	Thermus aquaticus Y51MC23 plasmid pTA78, complete sequence	18643-18674	10	0.688
CP030181_3	3.6\|969274\|32\|CP030181\|CRISPRCasFinder,CRT	969274-969305	32	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	810485-810516	10	0.688
CP030181_3	3.6\|969274\|32\|CP030181\|CRISPRCasFinder,CRT	969274-969305	32	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	2176123-2176154	10	0.688
CP030181_3	3.13\|969702\|32\|CP030181\|CRISPRCasFinder,CRT	969702-969733	32	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	58448-58479	10	0.688
CP030181_3	3.13\|969702\|32\|CP030181\|CRISPRCasFinder,CRT	969702-969733	32	NZ_CP016618	Microvirga ossetica strain V5/3m plasmid unnamed3, complete sequence	501692-501723	10	0.688
CP030181_3	3.3\|969091\|32\|CP030181\|CRISPRCasFinder,CRT	969091-969122	32	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	704733-704764	11	0.656
CP030181_3	3.3\|969091\|32\|CP030181\|CRISPRCasFinder,CRT	969091-969122	32	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1427651-1427682	11	0.656

1. spacer 2.16|952166|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

2. spacer 2.16|952166|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

3. spacer 3.3|969091|32|CP030181|CRISPRCasFinder,CRT matches to NZ_CP039495 (Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 plasmid pCFSAN000669_2, complete sequence) position: , mismatch: 2, identity: 0.938

agaatattcaactccagcgggggaaagacgca	CRISPR spacer
agaatattcaactccagcgggaaaaagacgca	Protospacer
*********************..*********

4. spacer 3.3|969091|32|CP030181|CRISPRCasFinder,CRT matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 2, identity: 0.938

agaatattcaactccagcgggggaaagacgca	CRISPR spacer
agaatattcaactccagcgggaaaaagacgca	Protospacer
*********************..*********

5. spacer 3.3|969091|32|CP030181|CRISPRCasFinder,CRT matches to NC_042346 (Salmonella virus BTP1 genome assembly, chromosome: BTP1) position: , mismatch: 2, identity: 0.938

agaatattcaactccagcgggggaaagacgca	CRISPR spacer
agaatattcaactccagcgggaaaaagacgca	Protospacer
*********************..*********

6. spacer 3.11|969579|32|CP030181|CRISPRCasFinder,CRT matches to NZ_CP032813 (Escherichia coli strain ERL03-1416 plasmid pERL03-1416-2, complete sequence) position: , mismatch: 4, identity: 0.875

-ggcctcacatcggcgcccgctggtcacgacca	CRISPR spacer
tggcctc-cgtcagcgcccgctgctcacgacca	Protospacer
 ****** *.**.********** *********

7. spacer 2.2|951311|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 7, identity: 0.781

ccgggatccgtcatcggtcgtggttcactgca	CRISPR spacer
ccggtatccgtcatcggtcttggcgtgcagca	Protospacer
**** ************** ***. ..* ***

8. spacer 2.8|951677|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to MN693026 (Marine virus AFVG_117M72, complete genome) position: , mismatch: 7, identity: 0.781

atgcggag---aaaatggaatcagagctacaggaa	CRISPR spacer
---tggagctcaaaatggaataagagttacaggag	Protospacer
   .****   ********** ****.*******.

9. spacer 2.10|951799|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NC_016767 (Erwinia phage PEp14, complete genome) position: , mismatch: 7, identity: 0.781

gtttcagcgtggagctgcatgatgttcgcgcc	CRISPR spacer
gctttgcggtggcgctgcatgatggtcgcgcc	Protospacer
*.**..  **** *********** *******

10. spacer 2.20|952410|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021170 (Paenibacillus bovis strain BD3526 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

cgtttctggcgggggtagggaacgcccagaaa	CRISPR spacer
tgctgcgggctggggtagggaacgctcagata	Protospacer
.*.* * *** **************.**** *

11. spacer 3.19|970068|32|CP030181|CRISPRCasFinder,CRT matches to KR093648 (Moraxella phage Mcat24, complete genome) position: , mismatch: 7, identity: 0.781

ttagccatccccataccaaagttaa--agtcgta	CRISPR spacer
ccagccatcaccataccaatgttaaatagtct--	Protospacer
..******* ********* *****  ****

12. spacer 3.19|970068|32|CP030181|CRISPRCasFinder,CRT matches to KR093648 (Moraxella phage Mcat24, complete genome) position: , mismatch: 7, identity: 0.781

ttagccatccccataccaaagttaa--agtcgta	CRISPR spacer
ccagccatcaccataccaatgttaaatagtct--	Protospacer
..******* ********* *****  ****

13. spacer 2.4|951433|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134460 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgtcgctcgcgtccggccagcgtgcagg	CRISPR spacer
cgcgcgtcgctcgcgcccggccagggtttcgc	Protospacer
 .*************.******** ** . *

14. spacer 2.4|951433|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014580 (Burkholderia sp. RPE67 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgtcgctcgcgtccggccagcgtgcagg	CRISPR spacer
ttcgcgtcgatcgcgcccggccagcacgaacg	Protospacer
  ******* *****.*********..* * *

15. spacer 2.10|951799|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025552 (Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gtttcagcgtggagctgcatgatgttcgcgcc	CRISPR spacer
cggccggcgtggagctgctggatgttcgcggc	Protospacer
   .*.************  ********** *

16. spacer 2.11|951860|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

cggaggatggaatatttccgaggctggcgatt	CRISPR spacer
tgggagatggaatacttccggggctggcaacc	Protospacer
.**..*********.*****.*******.*..

17. spacer 2.12|951921|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

cggaggatggaatatttccgaggctggcgatt	CRISPR spacer
tgggagatggaatacttccggggctggcaacc	Protospacer
.**..*********.*****.*******.*..

18. spacer 3.6|969274|32|CP030181|CRISPRCasFinder,CRT matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 8, identity: 0.75

tgcggatttaccgtcggcaaaaccg-cgctgat	CRISPR spacer
gcaggatataccgccggcaaaaccgccaccga-	Protospacer
   **** *****.*********** *.*.**

19. spacer 3.15|969824|32|CP030181|CRISPRCasFinder,CRT matches to NZ_CP045296 (Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgtgggggcggctgattgatgatgcggagaaa	CRISPR spacer
cgtgggagcggctgattgatcatgcccatttg	Protospacer
******.************* ****  *   .

20. spacer 3.23|970312|32|CP030181|CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

agcgccgatccggtggtgtccaaca-caacgaa	CRISPR spacer
gacgccgagccggtggtggccaacagcgatgt-	Protospacer
..****** ********* ****** *.*.*

21. spacer 3.23|970312|32|CP030181|CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

agcgccgatccggtggtgtccaaca-caacgaa	CRISPR spacer
gacgccgagccggtggtggccaacagcgatgt-	Protospacer
..****** ********* ****** *.*.*

22. spacer 3.23|970312|32|CP030181|CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

agcgccgatccggtggtgtccaaca-caacgaa	CRISPR spacer
gacgccgagccggtggtggccaacagcgatgt-	Protospacer
..****** ********* ****** *.*.*

23. spacer 3.23|970312|32|CP030181|CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

agcgccgatccggtggtgtccaaca-caacgaa	CRISPR spacer
gacgccgagccggtggtggccaacagcgatgt-	Protospacer
..****** ********* ****** *.*.*

24. spacer 3.23|970312|32|CP030181|CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

agcgccgatccggtggtgtccaaca-caacgaa	CRISPR spacer
gacgccgagccggtggtggccaacagcgatgt-	Protospacer
..****** ********* ****** *.*.*

25. spacer 2.2|951311|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to AY986977 (Xanthomonas campestris pv. pelargonii phage Xp15, complete genome) position: , mismatch: 9, identity: 0.719

ccgggatccgtcatcggtcgtggttcactgca	CRISPR spacer
ttgcgatccatcatcggtcgaggttcaaacga	Protospacer
..* *****.********** ******    *

26. spacer 2.2|951311|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NC_007024 (Xanthomonas phage Xp15, complete genome) position: , mismatch: 9, identity: 0.719

ccgggatccgtcatcggtcgtggttcactgca	CRISPR spacer
ttgcgatccatcatcggtcgaggttcaaacga	Protospacer
..* *****.********** ******    *

27. spacer 2.7|951616|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NC_015905 (Borreliella bissettii DN127 plasmid cp32-6, complete sequence) position: , mismatch: 9, identity: 0.719

cgtataactattttgcgttgtcgtgtgattca	CRISPR spacer
cccataagtatttttcgttgtcgtgttgaata	Protospacer
* .**** ****** *********** .  .*

28. spacer 2.7|951616|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NC_015909 (Borreliella bissettii DN127 plasmid cp32-5, complete sequence) position: , mismatch: 9, identity: 0.719

cgtataactattttgcgttgtcgtgtgattca	CRISPR spacer
cccataagtatttttcgttgtcgtgttgaata	Protospacer
* .**** ****** *********** .  .*

29. spacer 2.10|951799|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK036885 (Leclercia adecarboxylata strain 16005813 plasmid p16005813C, complete sequence) position: , mismatch: 9, identity: 0.719

gtttcagcgtggagctgcatgatgttcgcgcc	CRISPR spacer
taactattatggagccgcatgatgttcgcgcc	Protospacer
   ..* ..******.****************

30. spacer 2.13|951982|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccccgatagcgacgcttctgtagtcactggca	CRISPR spacer
gtccgatagcgacacttcggtagtcaggcgtg	Protospacer
 .***********.**** *******   *..

31. spacer 2.23|952593|32|CP030181|CRISPRCasFinder,CRT matches to NC_047851 (Brevibacterium phage LuckyBarnes, complete genome) position: , mismatch: 9, identity: 0.719

ccggatgaaaacgcctacccggaagactacga	CRISPR spacer
gcagatgaaatcgcctaccgggaagagctggc	Protospacer
 *.******* ******** ****** .  *

32. spacer 3.5|969213|32|CP030181|CRISPRCasFinder,CRT matches to AP018399 (Xanthomonas phage XacN1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

agcgattcatgcagcgtgatttcacatccgta	CRISPR spacer
tacgattcttccagcgtgatttcacgtagggc	Protospacer
 .****** * **************.*  *

33. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MK761195 (Salmonella phage SF4, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

34. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MK761199 (Salmonella phage SI2, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

35. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MT074481 (Salmonella phage sidste, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

36. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MK761197 (Salmonella phage SS4, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

37. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MT677934 (Salmonella phage NBSal007, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

38. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MK972702 (Salmonella phage SS5, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

39. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MK759883 (Salmonella phage vB_SenS_SB15, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

40. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MK972706 (Salmonella phage SS8, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

41. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MK578530 (Salmonella phage vB_SenS_SB3, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

42. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MK931446 (Salmonella phage Shelanagig, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

43. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MK770409 (Salmonella phage SF1, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

44. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MK972703 (Salmonella phage SS7, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

45. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MK972700 (Salmonella phage SS1, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

46. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MK761196 (Salmonella phage SF5, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

47. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MK761198 (Salmonella phage SS10, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

48. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MF158037 (Salmonella phage St162, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

49. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MF158037 (Salmonella phage St162, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

50. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MK972691 (Salmonella phage SI1, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

51. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to NC_041991 (Salmonella phage vB_SenS_AG11, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

52. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MK972701 (Salmonella phage SS6, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

53. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to MK972705 (Salmonella phage SF2, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgaaggtaattaccccatccttaccgccacta	Protospacer
*.  . ...************.**********

54. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
cgccttcggttcccccatcctcaccgtcaacg	Protospacer
*... ****** **************.** ..

55. spacer 3.10|969518|32|CP030181|CRISPRCasFinder,CRT matches to KT962832 (Salmonella phage fSE1C, complete genome) position: , mismatch: 9, identity: 0.719

cattatcggttaccccatcctcaccgccacta	CRISPR spacer
caaaggtaattaccccatccttaccaccacta	Protospacer
**  . ...************.***.******

56. spacer 3.13|969702|32|CP030181|CRISPRCasFinder,CRT matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

acgtgctcaacgagtatctggtgatcccgttc	CRISPR spacer
aactgcgcaacgagtatctggcgatctagagg	Protospacer
*  *** **************.****. *

57. spacer 3.24|970373|32|CP030181|CRISPRCasFinder,CRT matches to NZ_MG266000 (Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence) position: , mismatch: 9, identity: 0.719

gttgggttgcatagatgacacgcttataaata	CRISPR spacer
gaattatggcatagatgacatgattataaatt	Protospacer
*    .* ************.* ********

58. spacer 2.2|951311|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012101 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence) position: , mismatch: 10, identity: 0.688

ccgggatccgtcatcggtcgtggttcactgca	CRISPR spacer
ataagatccatcatcggtcgcggttcattcgc	Protospacer
 ...*****.**********.******.*

59. spacer 2.2|951311|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020952 (Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence) position: , mismatch: 10, identity: 0.688

ccgggatccgtcatcggtcgtggttcactgca	CRISPR spacer
gtcgcggccgtcatcggtcttggttcaatggg	Protospacer
 . * . ************ ******* ** .

60. spacer 2.2|951311|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031072 (Bacillus mycoides strain BPN401 plasmid pl395, complete sequence) position: , mismatch: 10, identity: 0.688

ccgggatccgtcatcggtcgtggttcactgca	CRISPR spacer
agaagatccatcatcggtcgcggttcattcgc	Protospacer
  ..*****.**********.******.*

61. spacer 2.2|951311|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020744 (Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ccgggatccgtcatcggtcgtggttcactgca	CRISPR spacer
agaagatccatcatcggtcgcggttcattcgc	Protospacer
  ..*****.**********.******.*

62. spacer 2.2|951311|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 10, identity: 0.688

ccgggatccgtcatcggtcgtggttcactgca	CRISPR spacer
agaagatccatcatcggtcgcggttcattcgc	Protospacer
  ..*****.**********.******.*

63. spacer 2.2|951311|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009691 (Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence) position: , mismatch: 10, identity: 0.688

ccgggatccgtcatcggtcgtggttcactgca	CRISPR spacer
agaagatccatcatcggtcgcggttcattcgc	Protospacer
  ..*****.**********.******.*

64. spacer 2.2|951311|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to CP037991 (Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ccgggatccgtcatcggtcgtggttcactgca	CRISPR spacer
agaagatccatcatcggtcgcggttcattcgc	Protospacer
  ..*****.**********.******.*

65. spacer 2.17|952227|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatcgagagtgcgaagaggcagaacgggca	CRISPR spacer
gaaggtggcagtgccaagagacagaacgggca	Protospacer
  .. .*. ***** *****.***********

66. spacer 2.20|952410|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU254577 (Pseudomonas aeruginosa strain HN39 plasmid pHN39-SIM, complete sequence) position: , mismatch: 10, identity: 0.688

cgtttctggcgggggtagggaacgcccagaaa	CRISPR spacer
agggtctggcgggggtagggaagtccccaggt	Protospacer
 *  ******************  *** ...

67. spacer 2.20|952410|32|CP030181|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010826 (Thermus aquaticus Y51MC23 plasmid pTA78, complete sequence) position: , mismatch: 10, identity: 0.688

cgtttctggcgggggtagggaacgcccagaaa	CRISPR spacer
gctttatggcgggggtaaggaacgctgattcc	Protospacer
  *** ***********.*******. *

68. spacer 3.6|969274|32|CP030181|CRISPRCasFinder,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.688

tgcggatttaccgtcggcaaaaccgcgctgat	CRISPR spacer
ccgttgtccaccgtcgccaaaatcgcgctgat	Protospacer
.    .*..******* *****.*********

69. spacer 3.6|969274|32|CP030181|CRISPRCasFinder,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 10, identity: 0.688

tgcggatttaccgtcggcaaaaccgcgctgat	CRISPR spacer
ccgttgtccaccgtcgccaaaatcgcgctgat	Protospacer
.    .*..******* *****.*********

70. spacer 3.13|969702|32|CP030181|CRISPRCasFinder,CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

acgtgctcaacgagtatctggtgatcccgttc	CRISPR spacer
cagtgctcgacgagtatctggagatgggcgac	Protospacer
  ******.************ ***      *

71. spacer 3.13|969702|32|CP030181|CRISPRCasFinder,CRT matches to NZ_CP016618 (Microvirga ossetica strain V5/3m plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

acgtgctcaacgagtatctggtgatcccgttc	CRISPR spacer
tcccgctcaacgagtatctggaaatcctcgcg	Protospacer
 * .***************** .****.  .

72. spacer 3.3|969091|32|CP030181|CRISPRCasFinder,CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.656

agaatattcaactccagcgggggaaagacgca	CRISPR spacer
tcggcgagcaactccagcggggggaaggcgcc	Protospacer
  ....  ***************.***.***

73. spacer 3.3|969091|32|CP030181|CRISPRCasFinder,CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 11, identity: 0.656

agaatattcaactccagcgggggaaagacgca	CRISPR spacer
tcggcgagcaactccagcggggggaaggcgcc	Protospacer
  ....  ***************.***.***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1439435 : 1490343

Salmonella_phage(65.71%)

portal,protease,coat,tail,lysis,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD13490.1\|1439435_1442108_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	2.1e-58	34.4
AXD13491.1\|1442104_1442488_-	hypothetical protein	NA	NA	NA	NA
AXD13492.1\|1442484_1442769_-	hypothetical protein	NA	NA	NA	NA
AXD13493.1\|1442800_1443160_-	hypothetical protein	NA	NA	NA	NA
AXD16614.1\|1443152_1443719_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
AXD13494.1\|1443902_1444103_-	AlpA family phage regulatory protein	A0A1W6JPE9	Morganella_phage	5.5e-09	54.2
AXD13495.1\|1444368_1445079_-	hypothetical protein	NA	NA	NA	NA
AXD13496.1\|1445075_1446368_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	7.8e-72	40.8
AXD16615.1\|1446644_1446848_-	hypothetical protein	C6ZR24	Salmonella_phage	2.7e-32	97.0
AXD13497.1\|1446943_1447294_-	hypothetical protein	I6R980	Salmonella_phage	2.7e-59	98.3
AXD13498.1\|1447538_1447805_-	hypothetical protein	A0A1V0E5L9	Salmonella_phage	3.7e-45	97.7
AXD13499.1\|1447881_1448766_-	DUF551 domain-containing protein	A0A1V0E5L6	Salmonella_phage	4.4e-74	77.0
AXD13500.1\|1448762_1449113_-	hypothetical protein	NA	NA	NA	NA
AXD16616.1\|1449112_1449901_-	ead/Ea22-like family protein	I6RSM9	Salmonella_phage	8.1e-80	77.2
AXD13501.1\|1449905_1450574_-	ead/Ea22-like family protein	Q8HAA6	Salmonella_phage	1.8e-43	96.6
AXD13502.1\|1450683_1451094_-	hypothetical protein	A0A1R3Y5S0	Salmonella_virus	7.4e-69	94.8
AXD13503.1\|1451090_1451261_-	DUF2737 family protein	A0A220NQV6	Salmonella_phage	7.9e-25	98.2
AXD13504.1\|1451271_1451565_-	DUF2856 family protein	E7C9P8	Salmonella_phage	1.2e-49	99.0
AXD13505.1\|1451611_1451896_-	sigma-70 family RNA polymerase sigma factor	Q76H41	Enterobacteria_phage	6.8e-45	98.9
AXD13506.1\|1451895_1452603_-	recombinase	A0A1R3Y600	Salmonella_virus	4.1e-139	100.0
AXD13507.1\|1452732_1452921_-	protein kil	B8K1E1	Salmonella_phage	1.6e-31	100.0
AXD13508.1\|1452901_1453054_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	B8K1E2	Salmonella_phage	4.6e-24	98.0
AXD16617.1\|1453377_1453668_-	hypothetical protein	A0A1R3Y5U4	Salmonella_virus	1.1e-31	73.3
AXD13509.1\|1453699_1453942_-	hypothetical protein	U5PUY0	Salmonella_phage	7.8e-18	58.4
AXD13510.1\|1453969_1454170_-	restriction endonuclease	A0A1R3Y5S4	Salmonella_virus	1.1e-30	97.0
AXD13511.1\|1454384_1454963_+	superinfection exclusion protein B	A0A075B8E6	Enterobacteria_phage	8.8e-92	100.0
AXD13512.1\|1454983_1455286_-	regulator	A0A075B8K6	Enterobacteria_phage	3.7e-49	100.0
AXD16618.1\|1455653_1456316_-	LexA family transcriptional regulator	A0A0M4QWY1	Salmonella_phage	1.8e-125	99.1
AXD13513.1\|1456434_1456650_+	XRE family transcriptional regulator	A0A0M4RTV8	Salmonella_phage	4.1e-34	100.0
AXD13514.1\|1456757_1457036_+	hypothetical protein	A0A220NRS4	Escherichia_phage	2.2e-40	93.5
AXD13515.1\|1457218_1458067_+	replication protein	C6ZR51	Salmonella_phage	1.3e-152	95.7
AXD13516.1\|1458174_1460055_+	bifunctional DNA primase/helicase	A0A0M4R313	Salmonella_phage	0.0e+00	99.5
AXD13517.1\|1460055_1460334_+	hypothetical protein	C6ZR54	Salmonella_phage	5.8e-49	98.9
AXD13518.1\|1460406_1460733_+	hypothetical protein	Q716D0	Shigella_phage	3.3e-59	100.0
AXD13519.1\|1460729_1460930_+	hypothetical protein	Q716C9	Shigella_phage	1.8e-31	98.5
AXD16619.1\|1461007_1461190_+	hypothetical protein	A0A220NQX3	Salmonella_phage	2.6e-26	96.7
AXD13520.1\|1461192_1461381_+	hypothetical protein	A0A1R3Y6Z7	Salmonella_virus	4.2e-27	100.0
AXD13521.1\|1461337_1461784_+	recombination protein NinB	I6R0N7	Salmonella_phage	1.6e-80	98.6
AXD13522.1\|1461780_1461954_+	protein ninD	C6ZR56	Salmonella_phage	5.2e-32	100.0
AXD13523.1\|1461920_1462103_+	NinE family protein	Q716C5	Shigella_phage	1.8e-27	96.7
AXD13524.1\|1462099_1462276_+	NinF family protein	A0A0M4S6T3	Salmonella_phage	1.8e-27	94.8
AXD13525.1\|1462238_1462535_+	hypothetical protein	A0A0M3ULJ7	Salmonella_phage	2.0e-47	100.0
AXD13526.1\|1462531_1462927_+	RusA family crossover junction endodeoxyribonuclease	A0A0M4REJ2	Salmonella_phage	2.6e-71	99.2
AXD13527.1\|1462923_1463127_+	protein ninH	A0A075B8J4	Enterobacteria_phage	7.2e-33	100.0
AXD13528.1\|1463107_1463287_+	hypothetical protein	A0A1V0E5I7	Salmonella_phage	7.1e-24	100.0
AXD13529.1\|1463283_1463907_+	antitermination protein	K7PM87	Enterobacteria_phage	1.2e-113	99.5
AXD16620.1\|1464047_1464230_-	hypothetical protein	A0A088CPS7	Enterobacteria_phage	5.0e-25	93.2
AXD13530.1\|1464342_1464546_+	hypothetical protein	I6R0S9	Salmonella_phage	1.1e-33	100.0
AXD16621.1\|1464523_1465021_+	lysozyme	I6R0P2	Salmonella_phage	1.7e-91	99.4
AXD13531.1\|1465109_1465547_+\|lysis	lysis protein	K7P710	Enterobacteria_phage	8.5e-71	96.6
AXD13532.1\|1465750_1466281_+	KilA-N domain-containing protein	B8K1H1	Salmonella_phage	3.4e-90	95.5
AXD13533.1\|1466468_1466849_+	hypothetical protein	Q716B1	Shigella_phage	1.0e-64	97.6
AXD13534.1\|1466952_1467195_+	DUF2560 family protein	A0A0N7CDV1	Salmonella_phage	1.3e-36	100.0
AXD13535.1\|1467197_1467602_+	Decoration protein	C6ZR73	Salmonella_phage	3.1e-67	100.0
AXD13536.1\|1467605_1468094_+	DNA-packaging protein	A8CGG1	Salmonella_phage	2.9e-88	100.0
AXD13537.1\|1468071_1469571_+\|terminase	terminase	A0A0M4S5Z3	Salmonella_phage	3.1e-306	99.6
AXD13538.1\|1469570_1471748_+\|portal	portal protein	Q5C835	Enterobacteria_phage	0.0e+00	99.6
AXD13539.1\|1471761_1472673_+	scaffolding protein	A0A192Y6T4	Salmonella_phage	4.9e-161	100.0
AXD13540.1\|1472672_1473965_+\|coat	coat protein	C6ZR10	Salmonella_phage	3.2e-243	99.3
AXD13541.1\|1474005_1474566_+	hypothetical protein	I6S1J7	Salmonella_phage	7.0e-102	98.4
AXD13542.1\|1474549_1475050_+	hypothetical protein	I1TEJ0	Salmonella_phage	5.5e-90	98.8
AXD13543.1\|1475009_1476428_+	hypothetical protein	I1TEJ1	Salmonella_phage	1.5e-273	98.9
AXD13544.1\|1476431_1477070_+\|tail	phage tail protein	A0A088CPT1	Enterobacteria_phage	6.5e-88	98.1
AXD13545.1\|1477069_1477525_+	DUF2824 family protein	I6R0L6	Salmonella_phage	1.5e-86	98.7
AXD13546.1\|1477527_1478217_+	DNA transfer protein	B9UDK9	Salmonella_phage	4.3e-93	93.4
AXD16622.1\|1478259_1479576_+	DNA transfer protein	B9UDL0	Salmonella_phage	2.1e-237	98.6
AXD13547.1\|1479572_1481393_+	DNA transfer protein	A0A2H4FNB8	Salmonella_phage	1.4e-281	94.1
AXD13548.1\|1481414_1482053_-	hypothetical protein	NA	NA	NA	NA
AXD16623.1\|1482324_1482510_+	hypothetical protein	I6RSG3	Salmonella_phage	1.1e-08	100.0
AXD13549.1\|1482484_1482694_-	hypothetical protein	I6R975	Salmonella_phage	5.9e-30	98.6
AXD13550.1\|1482690_1482942_-	Arc family DNA-binding protein	A5VW59	Enterobacteria_phage	1.2e-34	95.1
AXD13551.1\|1483047_1483188_+	Arc family DNA-binding protein	A0A0M4S6R9	Salmonella_phage	4.4e-05	59.1
AXD13552.1\|1483184_1483427_+	hypothetical protein	NA	NA	NA	NA
AXD16624.1\|1483489_1484419_+	phage antirepressor Ant	A5VW58	Enterobacteria_phage	2.9e-161	90.9
AXD13553.1\|1484518_1486279_+	hypothetical protein	I6S5Y0	Salmonella_phage	3.0e-58	88.3
AXD13554.1\|1486314_1487766_-	hypothetical protein	NA	NA	NA	NA
AXD13555.1\|1487762_1488680_-	glycosyltransferase	I1TED8	Salmonella_phage	1.3e-161	93.1
AXD13556.1\|1488676_1489039_-	GtrA family protein	I1TED9	Salmonella_phage	6.2e-51	82.5
AXD13557.1\|1489173_1490343_-	DUF4102 domain-containing protein	I6R0M2	Salmonella_phage	3.5e-228	99.5

DBSCAN-SWA_2

1729803 : 1738974

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD13782.1\|1729803_1730751_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8
AXD13783.1\|1730734_1731466_+	ABC transporter permease	NA	NA	NA	NA
AXD13784.1\|1731446_1731554_-	hypothetical protein	NA	NA	NA	NA
AXD13785.1\|1731613_1732345_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AXD13786.1\|1732567_1734253_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
AXD13787.1\|1734249_1734969_+	DNA-binding response regulator	NA	NA	NA	NA
AXD13788.1\|1735015_1735483_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AXD13789.1\|1735539_1736070_-	DUF1307 domain-containing protein	NA	NA	NA	NA
AXD13790.1\|1736241_1736700_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AXD13791.1\|1736940_1738974_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_3

1904098 : 1915486

Enterobacteria_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD13935.1\|1904098_1905361_-	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	3.0e-68	36.8
AXD13936.1\|1906008_1906299_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.0e-08	49.1
AXD13937.1\|1906670_1907468_-	protein MtfA	NA	NA	NA	NA
AXD13938.1\|1907948_1908110_+	hypothetical protein	NA	NA	NA	NA
AXD13939.1\|1908236_1908656_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.8e-36	60.5
AXD13940.1\|1908658_1909927_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	3.8e-228	92.7
AXD13941.1\|1910381_1910594_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AXD16643.1\|1910604_1910793_+	cold-shock protein	NA	NA	NA	NA
AXD13942.1\|1911052_1912246_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	7.9e-111	57.3
AXD13943.1\|1912895_1913207_+	hypothetical protein	NA	NA	NA	NA
AXD13944.1\|1913286_1913982_+	phosphohydrolase	S4W232	Pandoravirus	2.8e-07	27.5
AXD13945.1\|1914055_1915486_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_4

1984766 : 2043650

uncultured_Caudovirales_phage(17.65%)

integrase,transposase,tail,tRNA

attL 1994492:1994505|attR 2044227:2044240

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD14023.1\|1984766_1986500_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	9.8e-86	33.6
AXD14024.1\|1986736_1987306_+	VOC family protein	NA	NA	NA	NA
AXD14025.1\|1987325_1988072_+	copper homeostasis protein CutC	NA	NA	NA	NA
AXD14026.1\|1988307_1989276_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
AXD14027.1\|1989272_1990016_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	7.0e-25	30.9
AXD14028.1\|1990056_1990452_-	hypothetical protein	NA	NA	NA	NA
AXD16645.1\|1990529_1990979_+	hypothetical protein	A0A2D1UII2	Escherichia_phage	1.9e-49	82.8
AXD14029.1\|1992638_1993223_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.5e-83	80.6
AXD14030.1\|1993737_1993827_-\|tail	phage tail protein	NA	NA	NA	NA
AXD14031.1\|1994090_1994216_+	arsenic transporter	NA	NA	NA	NA
1994492:1994505	attL	NA	NA	NA	NA
AXD14032.1\|1995748_1997860_+	type III secretion system effector E3 ubiquitin transferase SspH1	Q9MBL9	Phage_Gifsy-2	2.1e-26	46.9
AXD14033.1\|1998179_1998851_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.1e-80	60.8
AXD14034.1\|1999173_1999740_-	hydrolase	NA	NA	NA	NA
AXD14035.1\|2000064_2001837_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
AXD14036.1\|2001939_2002392_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
AXD14037.1\|2002421_2003162_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
AXD14038.1\|2003198_2003720_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.6e-10	35.1
AXD14039.1\|2003721_2004321_-	YebB family permuted papain-like enzyme	NA	NA	NA	NA
AXD16646.1\|2004547_2005222_+	hypothetical protein	NA	NA	NA	NA
AXD14040.1\|2005581_2006193_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
AXD14041.1\|2006201_2007212_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	2.4e-07	25.9
AXD14042.1\|2007290_2008076_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
AXD14043.1\|2008072_2008828_-	Mn2+/Zn2+ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.5e-18	29.4
AXD16647.1\|2008891_2009851_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
AXD14044.1\|2009866_2011186_+	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	2.6e-14	40.9
AXD14045.1\|2011076_2011304_-	hypothetical protein	NA	NA	NA	NA
AXD14046.1\|2011302_2012274_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
AXD14047.1\|2012346_2013789_-	pyruvate kinase II	NA	NA	NA	NA
AXD14048.1\|2013912_2014782_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AXD14049.1\|2014965_2015151_-	hypothetical protein	NA	NA	NA	NA
AXD14050.1\|2015123_2016599_+	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	2.6e-79	37.5
AXD14051.1\|2016833_2018645_+	phosphogluconate dehydratase	NA	NA	NA	NA
AXD14052.1\|2018682_2019324_+	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA
AXD14053.1\|2019423_2020602_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA
AXD14054.1\|2020732_2021023_+	damage-inducible protein YebG	NA	NA	NA	NA
AXD14055.1\|2021090_2021444_+	hypothetical protein	NA	NA	NA	NA
AXD14056.1\|2021537_2022197_+	tellurite resistance TerB family protein	NA	NA	NA	NA
AXD14057.1\|2022410_2024462_+	oligopeptidase B	NA	NA	NA	NA
AXD14058.1\|2024844_2026053_-\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	100.0
AXD14059.1\|2026556_2027213_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
AXD14060.1\|2027320_2027551_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
AXD14061.1\|2027688_2028063_+	CopC domain-containing protein YobA	NA	NA	NA	NA
AXD14062.1\|2028063_2028939_+	hypothetical protein	NA	NA	NA	NA
AXD14063.1\|2028955_2029309_+	DUF2511 domain-containing protein	NA	NA	NA	NA
AXD16648.1\|2029366_2029486_+	hypothetical protein	NA	NA	NA	NA
AXD14064.1\|2029682_2030423_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	6.1e-53	51.6
AXD16649.1\|2030355_2030649_+	hypothetical protein	NA	NA	NA	NA
AXD14065.1\|2031822_2032020_-	hypothetical protein	NA	NA	NA	NA
AXD14066.1\|2032444_2033215_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
AXD14067.1\|2033862_2034663_-	hypothetical protein	NA	NA	NA	NA
AXD14068.1\|2035595_2035940_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.8e-20	47.3
AXD14069.1\|2036385_2036781_+	DUF977 family protein	A0A088CBK9	Shigella_phage	4.9e-17	37.3
AXD14070.1\|2037067_2038198_-	GGDEF domain-containing protein	NA	NA	NA	NA
AXD14071.1\|2040160_2040775_-	disulfide bond formation protein B	NA	NA	NA	NA
AXD14072.1\|2040784_2040943_-	hypothetical protein	NA	NA	NA	NA
AXD14073.1\|2041075_2041990_-	EamA family transporter	NA	NA	NA	NA
AXD16650.1\|2042609_2042810_+	hypothetical protein	NA	NA	NA	NA
AXD14074.1\|2043281_2043650_-\|integrase	integrase	K7PHK0	Enterobacteria_phage	5.4e-18	39.8
2044227:2044240	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3253662 : 3303638

Salmonella_phage(78.72%)

integrase,capsid,portal,head,tail,lysis,plate,transposase

attL 3246061:3246075|attR 3266163:3266177

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3246061:3246075	attL	NA	NA	NA	NA
AXD15220.1\|3253662_3254457_+	iron-enterobactin ABC transporter ATP-binding protein	A0A1V0SJ29	Klosneuvirus	2.2e-08	23.9
AXD15221.1\|3254509_3255646_-	LPS O-antigen length regulator	NA	NA	NA	NA
AXD15222.1\|3255908_3256961_-\|integrase	integrase	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
AXD15223.1\|3257044_3258721_-	DUF4041 domain-containing protein	A0A142LP25	Marinitoga_camini_virus	9.8e-83	67.0
AXD15224.1\|3258741_3259338_-	hypothetical protein	A0A1S6KZZ7	Salmonella_phage	8.1e-40	42.4
AXD15225.1\|3259433_3259655_+	regulator	NA	NA	NA	NA
AXD15226.1\|3259687_3260197_+	hypothetical protein	E5G6L3	Salmonella_phage	1.3e-86	98.2
AXD15227.1\|3260204_3260501_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	4.9e-22	90.4
AXD15228.1\|3260618_3260960_+	hypothetical protein	E5G6L5	Salmonella_phage	6.6e-55	97.3
AXD15229.1\|3261027_3261261_+	DUF2732 family protein	E5G6L6	Salmonella_phage	4.1e-32	97.4
AXD15230.1\|3261260_3261488_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.7e-36	100.0
AXD15231.1\|3261484_3262342_+	DNA adenine methylase	E5G6L8	Salmonella_phage	1.3e-160	97.2
AXD15232.1\|3262338_3264753_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	98.5
AXD15233.1\|3264906_3265095_+	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
AXD15234.1\|3265033_3265339_+	DinI family protein	E5G6M1	Salmonella_phage	2.3e-35	98.7
AXD15235.1\|3265467_3266208_-	DUF4145 domain-containing protein	A0A1S6L018	Salmonella_phage	1.3e-132	91.1
3266163:3266177	attR	NA	NA	NA	NA
AXD15236.1\|3266615_3267590_+	hypothetical protein	A4PE73	Ralstonia_virus	1.4e-52	40.8
AXD15237.1\|3267589_3267928_+	DUF4325 domain-containing protein	NA	NA	NA	NA
AXD15238.1\|3267974_3269012_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.8e-172	88.6
AXD15239.1\|3269011_3270778_-	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.7
AXD15240.1\|3270920_3271754_+\|capsid	capsid protein	A0A1S6KZW9	Salmonella_phage	1.5e-121	91.7
AXD15241.1\|3271770_3272829_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	8.4e-181	93.1
AXD15242.1\|3272832_3273483_+	hypothetical protein	E5G6M7	Salmonella_phage	8.7e-112	96.3
AXD15243.1\|3273578_3274043_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	3.2e-76	88.3
AXD15244.1\|3274042_3274246_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.4e-31	92.5
AXD15245.1\|3274249_3274465_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
AXD16706.1\|3274484_3274958_+	lysozyme	E5G6N1	Salmonella_phage	7.0e-79	89.7
AXD15246.1\|3274959_3275337_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	3.0e-16	40.8
AXD15247.1\|3275333_3275762_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	8.4e-47	76.6
AXD15248.1\|3275691_3275895_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	1.0e-23	76.1
AXD15249.1\|3275857_3276289_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.4e-70	93.0
AXD15250.1\|3276281_3276728_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	3.0e-63	86.3
AXD15251.1\|3276774_3278064_-	hypothetical protein	NA	NA	NA	NA
AXD15252.1\|3278148_3278727_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	3.6e-93	86.5
AXD15253.1\|3278723_3279083_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	8.0e-51	85.7
AXD15254.1\|3279069_3279978_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	4.1e-144	91.1
AXD15255.1\|3279970_3280576_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.5e-110	92.5
AXD15256.1\|3280572_3282084_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	1.5e-202	73.0
AXD15257.1\|3282083_3282686_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	1.9e-92	83.5
AXD15258.1\|3282657_3283074_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	1.2e-21	47.6
AXD15259.1\|3283076_3283583_-	hypothetical protein	NA	NA	NA	NA
AXD15260.1\|3283613_3284180_+	DNA-invertase	A0A1S6L009	Salmonella_phage	3.8e-87	84.2
AXD15261.1\|3284322_3285495_+\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	4.6e-204	90.3
AXD15262.1\|3285504_3286020_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	4.8e-89	94.7
AXD15263.1\|3286074_3286377_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	5.3e-40	89.0
AXD15264.1\|3286391_3286511_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
AXD15265.1\|3286503_3289581_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	69.6
AXD15266.1\|3289577_3290063_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	8.3e-67	80.6
AXD15267.1\|3290059_3291160_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	3.4e-177	88.5
AXD15268.1\|3291250_3291469_+	transcriptional regulator	Q53ZE7	Salmonella_virus	7.5e-20	69.0
AXD15269.1\|3291621_3295506_-	enterobactin non-ribosomal peptide synthetase EntF	A0A2K9KZV5	Tupanvirus	8.4e-61	28.3
AXD15270.1\|3295502_3295721_-	MbtH family protein	NA	NA	NA	NA
AXD15271.1\|3295751_3296966_-	enterochelin esterase	NA	NA	NA	NA
AXD15272.1\|3297154_3299410_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
AXD15273.1\|3299455_3300160_+	enterobactin synthase subunit EntD	NA	NA	NA	NA
AXD15274.1\|3300171_3301290_+	glutamate--cysteine ligase	NA	NA	NA	NA
AXD15275.1\|3301356_3301605_+	DUF1158 domain-containing protein	NA	NA	NA	NA
AXD15276.1\|3301610_3301952_-	RamA family antibiotic efflux transcriptional regulator	NA	NA	NA	NA
AXD15277.1\|3302429_3303638_-\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP030182

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

45447 : 79026

Escherichia_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD16810.1\|45447_46656_+\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	100.0
AXD16811.1\|47950_49024_+	hypothetical protein	NA	NA	NA	NA
AXD16812.1\|49101_49245_-	hypothetical protein	NA	NA	NA	NA
AXD16813.1\|49280_49757_-	hypothetical protein	NA	NA	NA	NA
AXD16814.1\|49904_50180_+	hypothetical protein	NA	NA	NA	NA
AXD16815.1\|50169_50370_+	hypothetical protein	NA	NA	NA	NA
AXD16816.1\|50436_50829_+	hypothetical protein	NA	NA	NA	NA
AXD16817.1\|50828_51227_+	hypothetical protein	NA	NA	NA	NA
AXD16818.1\|51241_51445_+	hypothetical protein	NA	NA	NA	NA
AXD16819.1\|51599_52805_+	hypothetical protein	NA	NA	NA	NA
AXD16820.1\|52974_53466_+	hypothetical protein	NA	NA	NA	NA
AXD16821.1\|53567_53795_+	hypothetical protein	NA	NA	NA	NA
AXD16822.1\|53904_54711_+	HNH endonuclease	G0X580	Salmonella_phage	1.3e-13	37.9
AXD16823.1\|54816_55236_+	hypothetical protein	NA	NA	NA	NA
AXD16824.1\|56713_57070_-	cupin domain-containing protein	NA	NA	NA	NA
AXD16825.1\|57203_57764_-	chlorite dismutase	NA	NA	NA	NA
AXD16987.1\|58170_58389_-	hypothetical protein	NA	NA	NA	NA
AXD16986.1\|60240_60945_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AXD16826.1\|61231_61453_-	hypothetical protein	NA	NA	NA	NA
AXD16827.1\|62627_63332_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AXD16828.1\|63343_63796_-	hypothetical protein	NA	NA	NA	NA
AXD16829.1\|64555_65851_-	MFS transporter	Q6JIH2	Burkholderia_virus	2.0e-59	34.9
AXD16830.1\|65905_67045_-	tricarballylate utilization protein TcuB	NA	NA	NA	NA
AXD16831.1\|67031_68435_-	FAD-dependent tricarballylate dehydrogenase TcuA	NA	NA	NA	NA
AXD16832.1\|68532_69459_-	tricarballylate utilization LysR family transcriptional regulator TcuR	NA	NA	NA	NA
AXD16833.1\|69527_69719_+	hypothetical protein	NA	NA	NA	NA
AXD16834.1\|69953_71351_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
AXD16835.1\|71613_72420_+	DUF4263 domain-containing protein	NA	NA	NA	NA
AXD16836.1\|73183_73375_-	hypothetical protein	NA	NA	NA	NA
AXD16837.1\|73428_74088_+	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	8.4e-131	100.0
AXD16838.1\|74288_74666_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXD16839.1\|74976_75981_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
AXD16840.1\|76059_79026_-\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6

DBSCAN-SWA_2

90893 : 142977

Bacillus_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD16853.1\|90893_92102_-\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
AXD16854.1\|92234_92843_+	hypothetical protein	NA	NA	NA	NA
AXD16855.1\|93092_93392_-	hypothetical protein	NA	NA	NA	NA
AXD16989.1\|93455_93686_-	hypothetical protein	NA	NA	NA	NA
AXD16856.1\|93739_94519_-	DNA repair protein	NA	NA	NA	NA
AXD16857.1\|94574_95507_-	hypothetical protein	NA	NA	NA	NA
AXD16858.1\|95503_96019_-	thermonuclease family protein	V5UN65	Mycobacterium_phage	7.1e-08	28.3
AXD16859.1\|96242_97670_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-101	55.3
AXD16860.1\|97798_97969_+	hypothetical protein	NA	NA	NA	NA
AXD16861.1\|97993_99289_+	DUF1173 family protein	NA	NA	NA	NA
AXD16862.1\|99326_99530_+	hypothetical protein	NA	NA	NA	NA
AXD16863.1\|99584_100805_-	hypothetical protein	NA	NA	NA	NA
AXD16990.1\|100807_100996_-	hypothetical protein	NA	NA	NA	NA
AXD16864.1\|101164_101620_-	DUF4942 domain-containing protein	NA	NA	NA	NA
AXD16865.1\|101999_102434_-	copper-binding protein	NA	NA	NA	NA
AXD16866.1\|102651_104052_-	sensor histidine kinase	W8CYF6	Bacillus_phage	3.2e-18	26.6
AXD16867.1\|104048_104729_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	8.7e-30	34.4
AXD16868.1\|104783_105713_-	copper resistance protein D	NA	NA	NA	NA
AXD16869.1\|105717_106098_-	copper resistance system chaperone PcoC	NA	NA	NA	NA
AXD16870.1\|106137_107034_-	copper resistance protein B	NA	NA	NA	NA
AXD16871.1\|107033_108851_-	multicopper oxidase PcoA	NA	NA	NA	NA
AXD16872.1\|109085_109535_+	copper resistance protein	NA	NA	NA	NA
AXD16873.1\|109823_110561_+	peptidase	A0A2H4JAF5	uncultured_Caudovirales_phage	1.3e-10	31.9
AXD16874.1\|110594_110792_-	DUF2933 domain-containing protein	NA	NA	NA	NA
AXD16875.1\|110832_113280_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.9e-83	35.4
AXD16876.1\|113407_113848_-	hypothetical protein	NA	NA	NA	NA
AXD16877.1\|113934_117081_-	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	6.1e-62	22.6
AXD16878.1\|117091_118384_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AXD16879.1\|118497_118851_-	copper ABC transporter substrate-binding protein	NA	NA	NA	NA
AXD16880.1\|118879_120265_-	Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA	NA	NA	NA
AXD16881.1\|120454_121135_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.1e-31	36.0
AXD16882.1\|121127_122609_+	Cu(+)/Ag(+) sensor histidine kinase	W8CYF6	Bacillus_phage	1.4e-27	30.1
AXD16883.1\|122853_123285_+	silver-binding protein SilE	NA	NA	NA	NA
AXD16884.1\|123432_123783_+	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	1.8e-18	50.5
AXD16885.1\|123951_125778_-	OLD family endonuclease	E5E3R2	Burkholderia_phage	4.7e-14	22.8
AXD16886.1\|126340_126640_-	XRE family transcriptional regulator	NA	NA	NA	NA
AXD16887.1\|126992_127919_-	hypothetical protein	NA	NA	NA	NA
AXD16888.1\|127930_129487_-\|transposase	transposase	NA	NA	NA	NA
AXD16889.1\|129527_130976_-	ATP-binding protein	NA	NA	NA	NA
AXD16991.1\|133085_133595_-	hypothetical protein	NA	NA	NA	NA
AXD16890.1\|133571_134276_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXD16891.1\|134420_135125_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXD16892.1\|136328_137033_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXD16893.1\|137162_137978_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
AXD16894.1\|138548_139409_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
AXD16895.1\|139591_140149_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
AXD16896.1\|140969_142226_+\|transposase	IS1380-like element ISEnca1 family transposase	A0A1B0VDR3	Salmonella_phage	1.0e-31	93.5
AXD16897.1\|142272_142977_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP030183

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP030181

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP030182

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection