CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029616	Lactobacillus salivarius strain DJ-sa-01 chromosome, complete genome	0 crisprs	c2c4_V-U1,cas3,DEDDh,WYL,c2c9_V-U4,csa3,cas14j,Cas14u_CAS-V,cas14k,c2c10_CAS-V-U3,DinG	0	0	9	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

362687 : 371710

Streptococcus_phage(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYC10388.1\|362687_363683_-	DNA polymerase III subunit tau	M1NSC1	Streptococcus_phage	2.9e-34	30.6
AYC10389.1\|363717_364344_-	Thymidylate kinase	M1PSC7	Streptococcus_phage	1.5e-49	51.0
AYC10390.1\|364463_364715_-	hypothetical protein	NA	NA	NA	NA
AYC10391.1\|364716_365316_-	Recombination protein RecR	NA	NA	NA	NA
AYC10392.1\|365342_365654_-	Nucleoid-associated protein	NA	NA	NA	NA
AYC10393.1\|365674_367414_-	DNA polymerase III subunit tau	A0A1U9WR94	Streptococcus_virus	8.7e-58	38.6
AYC10394.1\|367619_368120_-\|tRNA	tRNA-specific adenosine deaminase	NA	NA	NA	NA
AYC10395.1\|368133_368745_-	Ribosomal RNA small subunit methyltransferase C	NA	NA	NA	NA
AYC10396.1\|368947_369178_+	Glutaredoxin-like protein NrdH	X2KRY7	Enterococcus_phage	2.7e-12	40.3
AYC10397.1\|369174_369558_+	Putative NrdI-like protein	R4JF54	Bacillus_phage	1.3e-14	37.9
AYC10398.1\|369538_371710_+	Ribonucleoside-diphosphate reductase 2 subunit alpha	A8E2R1	Enterococcus_phage	4.1e-267	64.0

DBSCAN-SWA_2

638512 : 644100

Staphylococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYC10637.1\|638512_639817_+	hypothetical protein	Q331Y3	Clostridium_botulinum_C_phage	4.8e-61	41.1
AYC10638.1\|640046_640805_-	Dihydroanticapsin 7-dehydrogenase	F2NZ40	Diadromus_pulchellus_ascovirus	1.8e-12	30.0
AYC10639.1\|640804_641032_-	hypothetical protein	G3MBC9	Bacillus_virus	2.2e-06	37.0
AYC10640.1\|641045_641543_-	Queuosine precursor transporter QueT	E7DN70	Pneumococcus_phage	1.3e-14	36.7
AYC10641.1\|641724_641826_-	hypothetical protein	NA	NA	NA	NA
AYC10642.1\|642044_642917_-	DegV domain-containing protein	NA	NA	NA	NA
AYC10643.1\|642988_643333_-	Putative fluoride ion transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	1.2e-08	37.1
AYC10644.1\|643329_643701_-	Putative fluoride ion transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	4.0e-05	33.3
AYC10645.1\|643776_644100_-	Thioredoxin	A0A1X9I9P5	Staphylococcus_phage	8.6e-20	40.4

DBSCAN-SWA_3

944310 : 957530

Bacillus_virus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYC10912.1\|944310_946269_+	DNA gyrase subunit B	G3M9Z3	Bacillus_virus	1.6e-140	44.7
AYC10913.1\|946305_948858_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	9.0e-112	36.8
AYC10914.1\|949075_949366_+	30S ribosomal protein S6	NA	NA	NA	NA
AYC10915.1\|949406_949958_+	Single-stranded DNA-binding protein A	A8ASP5	Listeria_phage	1.5e-43	53.6
AYC10916.1\|949979_950216_+	30S ribosomal protein S18	NA	NA	NA	NA
AYC10917.1\|950266_951130_-	2-hydroxy-3-oxopropionate reductase	A0A077SLF7	Escherichia_phage	5.5e-21	26.8
AYC10918.1\|951322_951754_-	hypothetical protein	A0A0P0IQC6	Lactobacillus_phage	6.1e-29	48.0
AYC10919.1\|951853_953131_+	hypothetical protein	A0A286QQE5	Streptococcus_phage	3.9e-55	35.9
AYC10920.1\|953345_954359_+	Putative glycosyltransferase EpsH	NA	NA	NA	NA
AYC10921.1\|954562_955369_+	L-Ala--D-Glu endopeptidase	A0A7K9	Microcystis_virus	2.7e-06	37.5
AYC10922.1\|955607_957530_+	Asparagine synthetase [glutamine-hydrolyzing] 1	R4TIC1	Phaeocystis_globosa_virus	3.9e-27	27.3

DBSCAN-SWA_4

1234277 : 1248464

Bacillus_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYC11135.1\|1234277_1236263_+	Macrolide export ATP-binding/permease protein MacB	G9BWD6	Planktothrix_phage	1.1e-27	36.6
AYC11136.1\|1236273_1236924_+	putative HTH-type transcriptional regulator YvdT	NA	NA	NA	NA
AYC11137.1\|1236945_1238679_+	putative ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.8e-46	29.1
AYC11138.1\|1238678_1240325_+	putative ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.1e-49	30.3
AYC11139.1\|1240314_1241532_-	hypothetical protein	A0A0P0IJS6	Lactobacillus_phage	2.2e-124	57.7
AYC11140.1\|1241726_1242014_+	putative ABC transporter ATP-binding protein	W8CYT2	Bacillus_phage	4.1e-05	41.5
AYC11141.1\|1242069_1242210_-	hypothetical protein	NA	NA	NA	NA
AYC11142.1\|1242322_1242757_+	Acetyltransferase	NA	NA	NA	NA
AYC11143.1\|1243006_1244395_+	O-acetyl-ADP-ribose deacetylase	Q71G61	Red_sea_bream_iridovirus	1.0e-40	51.5
AYC11144.1\|1244494_1245052_+	hypothetical protein	A0A1X9IGG1	Lactococcus_phage	9.3e-14	31.9
AYC11145.1\|1245063_1245951_+	Protease HtpX	NA	NA	NA	NA
AYC11146.1\|1246196_1248464_-	DNA helicase IV	A0A2K9L413	Tupanvirus	2.9e-05	26.4

DBSCAN-SWA_5

1282719 : 1291818

Tupanvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYC11181.1\|1282719_1283697_+	Ribose-phosphate pyrophosphokinase	A0A2K9L8D8	Tupanvirus	1.5e-43	37.0
AYC11182.1\|1283769_1284270_+	Putative ribosomal N-acetyltransferase YdaF	NA	NA	NA	NA
AYC11183.1\|1284443_1285283_-	2,5-diketo-D-gluconic acid reductase B	A0A2H4PQR8	Staphylococcus_phage	6.2e-46	39.1
AYC11184.1\|1285288_1285525_-	hypothetical protein	NA	NA	NA	NA
AYC11185.1\|1285667_1286438_+	Purine nucleoside phosphorylase DeoD-type	F5CA76	Streptococcus_phi-m46.1-like_phage	1.3e-37	47.5
AYC11186.1\|1286512_1288135_+	putative ABC transporter ATP-binding protein YbiT	A0A1V0SKJ1	Klosneuvirus	1.0e-52	27.7
AYC11187.1\|1288208_1288445_+	hypothetical protein	NA	NA	NA	NA
AYC11188.1\|1288510_1289728_+	hypothetical protein	A0A0P0IJS6	Lactobacillus_phage	6.4e-116	54.0
AYC11189.1\|1289877_1290378_+	hypothetical protein	NA	NA	NA	NA
AYC11190.1\|1290534_1291818_+	hypothetical protein	A0A1S5SBP9	Streptococcus_phage	2.4e-41	29.7

DBSCAN-SWA_6

1343105 : 1354736

Moraxella_phage(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYC11225.1\|1343105_1344419_+	Guanine/hypoxanthine permease PbuG	A0A0R6PHV4	Moraxella_phage	2.5e-49	33.7
AYC11226.1\|1344562_1345336_+	hypothetical protein	G3MBH6	Bacillus_virus	4.4e-22	31.2
AYC11227.1\|1345473_1346844_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
AYC11228.1\|1346979_1348458_+	ATP-dependent RNA helicase CshA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.4e-64	36.8
AYC11229.1\|1348586_1348994_+	Holo-[acyl-carrier-protein] synthase	NA	NA	NA	NA
AYC11230.1\|1349012_1350128_+	Alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	5.6e-34	32.1
AYC11231.1\|1350176_1350425_+	hypothetical protein	NA	NA	NA	NA
AYC11232.1\|1350440_1350809_+	Endoribonuclease EndoA	A0A2P0ZKX3	Lactobacillus_phage	9.8e-12	35.1
AYC11233.1\|1350987_1352277_+	hypothetical protein	A0A1S5SBP9	Streptococcus_phage	9.6e-46	30.1
AYC11234.1\|1352366_1353203_-	hypothetical protein	A0A1V0CNL1	Kaumoebavirus	2.6e-12	30.1
AYC11235.1\|1353220_1354312_-	Oligoribonuclease NrnB	NA	NA	NA	NA
AYC11236.1\|1354325_1354736_-	Peptide deformylase	A0A2I7S809	Vibrio_phage	3.2e-11	37.5

DBSCAN-SWA_7

1570295 : 1578811

Megavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYC11444.1\|1570295_1572143_+	Chaperone protein DnaK	A0A2P1EIW2	Megavirus	3.1e-138	51.3
AYC11445.1\|1572283_1573417_+	Chaperone protein DnaJ	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	7.9e-28	31.4
AYC11446.1\|1573798_1574020_+	hypothetical protein	Q38341	Lactococcus_phage	1.4e-10	50.0
AYC11447.1\|1574023_1575373_+	hypothetical protein	O03929	Lactobacillus_phage	3.0e-82	48.4
AYC11448.1\|1575426_1575735_+	hypothetical protein	NA	NA	NA	NA
AYC11449.1\|1575737_1575992_+	hypothetical protein	NA	NA	NA	NA
AYC11450.1\|1576005_1576173_+	hypothetical protein	NA	NA	NA	NA
AYC11451.1\|1576270_1576837_+	hypothetical protein	Q5YA71	Bacillus_phage	8.9e-12	50.3
AYC11452.1\|1576981_1578811_+	Elongation factor 4	E4ZFJ7	Streptococcus_phage	4.3e-23	25.5

DBSCAN-SWA_8

1660394 : 1669167

Prochlorococcus_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYC11533.1\|1660394_1660877_+	Phosphopantetheine adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	3.6e-22	41.1
AYC11534.1\|1660873_1661908_+\|protease	Lon protease	NA	NA	NA	NA
AYC11535.1\|1662220_1662934_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	M4R1E8	Synechococcus_phage	6.3e-39	37.8
AYC11536.1\|1662952_1663201_+	Phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AYC11537.1\|1663200_1663875_+	Phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AYC11538.1\|1663876_1666102_+	Phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.9e-144	39.9
AYC11539.1\|1666077_1667529_+	Amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.6e-63	35.6
AYC11540.1\|1667529_1668567_+	Phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	5.9e-62	42.5
AYC11541.1\|1668579_1669167_+	Phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	1.5e-25	36.9

DBSCAN-SWA_9

1820515 : 1826429

Lactobacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYC11699.1\|1820515_1821379_-	Tyrosine recombinase XerD	A0A0M9JJ77	Lactobacillus_phage	2.9e-86	57.5
AYC11700.1\|1821717_1822371_-	hypothetical protein	NA	NA	NA	NA
AYC11701.1\|1822423_1823518_-	DNA polymerase III PolC-type	A0A0A8WJ41	Clostridium_phage	1.2e-17	31.3
AYC11702.1\|1823519_1823717_-	hypothetical protein	Q9T1Z0	Lactococcus_phage	1.1e-14	64.5
AYC11703.1\|1823722_1824301_-	hypothetical protein	NA	NA	NA	NA
AYC11704.1\|1824332_1824863_-	hypothetical protein	A0A0F6N4L7	Staphylococcus_phage	1.1e-27	45.5
AYC11705.1\|1824888_1825500_-	hypothetical protein	NA	NA	NA	NA
AYC11706.1\|1825564_1825990_-	hypothetical protein	Q9T201	Bacillus_phage	1.7e-07	36.7
AYC11707.1\|1826003_1826429_-	HTH-type transcriptional regulator ImmR	A0A2P1JU09	Anoxybacillus_phage	4.4e-24	43.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage