CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP016344	Klebsiella variicola strain E57-7 chromosome, complete genome	2 crisprs	csa3,cas3,DEDDh,DinG,cas3HD,WYL,RT	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP016344_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016344_1

4362848-4362966

Orphan

Consensus_repeat	Method
CTGACCCGGCCTACAAAACCGAAGCAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP016344_1

>merge|CP016344|1|4362848-4362966|CRISPRCasFinder
CTGACCCGGCCTACAAAACCGAAGCAGCAGACCCGGCAAGCGCAGCGCCACCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGCGCCTGACCCGGCCTACAAAACTGAAGCAGCAG

>CP016344|1|1|4362848-4362966|CRISPRCasFinder
CTGACCCGGCCTACAAAACCGAAGCAGCAG	ACCCGGCAAGCGCAGCGCCACCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGCGC
CTGACCCGGCCTACAAAACTGAAGCAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
CP016344.1\|AXA31782.1\|4355447_4356140_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|183181
CP016344.1\|AXA31786.1\|4358747_4360205_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
CP016344.1\|AXA31797.1\|4369465_4370206_+\|transpeptidase	unknown	unknown	gnl\|CDD\|225577
CP016344.1\|AXA31784.1\|4356681_4357926_-\|fermentation/respiration-switch-protein	unknown	unknown	gnl\|CDD\|235337
CP016344.1\|AXA31789.1\|4361918_4362779_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176522
CP016344.1\|AXA32862.1\|4364447_4365044_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
CP016344.1\|AXA31780.1\|4352582_4353866_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236149
CP016344.1\|AXA31792.1\|4365050_4365689_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
CP016344.1\|AXA31795.1\|4367710_4369054_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	unknown	unknown	gnl\|CDD\|235426
CP016344.1\|AXA31794.1\|4366468_4367707_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
CP016344.1\|AXA31787.1\|4360247_4360700_-\|acyltransferase	unknown	unknown	gnl\|CDD\|182099
CP016344.1\|AXA31798.1\|4370176_4370944_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
CP016344.1\|AXA31781.1\|4354001_4355402_+\|GABA-permease	unknown	unknown	gnl\|CDD\|182297
CP016344.1\|AXA31791.1\|4363211_4364435_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
CP016344.1\|AXA31788.1\|4360702_4361758_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
CP016344.1\|AXA31790.1\|4362993_4363209_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225538
CP016344.1\|AXA31783.1\|4356225_4356624_-\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
CP016344.1\|AXA31796.1\|4369010_4369220_+\|hypothetical-protein	unknown	unknown	unknown
CP016344.1\|AXA31785.1\|4358031_4358490_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
CP016344.1\|AXA31793.1\|4365681_4366476_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|235423

Protein	Function_ID	Function_description	E-value
CP016344.1\|AXA31782.1\|4355447_4356140_+\|transcriptional-regulator	gnl\|CDD\|183181	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional.	1.79438e-150
CP016344.1\|AXA31786.1\|4358747_4360205_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
CP016344.1\|AXA31797.1\|4369465_4370206_+\|transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.11512e-109
CP016344.1\|AXA31784.1\|4356681_4357926_-\|fermentation/respiration-switch-protein	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
CP016344.1\|AXA31789.1\|4361918_4362779_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	1.68152e-126
CP016344.1\|AXA32862.1\|4364447_4365044_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.25239e-127
CP016344.1\|AXA31780.1\|4352582_4353866_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236149	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase.	0
CP016344.1\|AXA31792.1\|4365050_4365689_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	1.0782e-142
CP016344.1\|AXA31795.1\|4367710_4369054_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
CP016344.1\|AXA31794.1\|4366468_4367707_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
CP016344.1\|AXA31787.1\|4360247_4360700_-\|acyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	2.03554e-88
CP016344.1\|AXA31798.1\|4370176_4370944_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	5.55311e-144
CP016344.1\|AXA31781.1\|4354001_4355402_+\|GABA-permease	gnl\|CDD\|182297	PRK10197, PRK10197, GABA permease.	0
CP016344.1\|AXA31791.1\|4363211_4364435_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
CP016344.1\|AXA31788.1\|4360702_4361758_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
CP016344.1\|AXA31790.1\|4362993_4363209_-\|hypothetical-protein	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	1.19399e-28
CP016344.1\|AXA31783.1\|4356225_4356624_-\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	2.69204e-83
CP016344.1\|AXA31785.1\|4358031_4358490_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113
CP016344.1\|AXA31793.1\|4365681_4366476_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	8.57576e-154

>CP016344.1|AXA31789.1|4361918_4362779_+|glycerophosphodiester-phosphodiesterase
MKKRLTALCLLATSSALANPQLIAHRGGTGDAPENTLPAIKLALENHAEAIWVTVQLSRDGVPVLYRSSDLSALTNAEGKVSSLTAAELAKVDAGWKWGDDSHPWHGKQATIPTLQSVLQQWPHTFFYIDIKSPDADPAVMGERLLAVLKATDSLDRVRVYSTDDRYIAALPSAIPRFVTRSETRTKLATISLSHQCQLSSQHEGEQWYGLELKRKVEVVEKFTLGEGISPATLTWDKEAMDCFRSQGKAHIIFFGINSAEDYRTAKELGADGVMVDSPAQAKSWQ
>CP016344.1|AXA31788.1|4360702_4361758_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSVHCHGSATLIAQEIRQTIERELHLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWSACEAIIENLYPELERRLAKVKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHKAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>CP016344.1|AXA31787.1|4360247_4360700_-|acyltransferase
MHIRAYRDSDLPLLCQIFLRAVQETASRDYTPAQIAAWAQVDETRWRQKLADSVGRVAVVNNQPVGFITAIGTHIDLLFASPDHARQGIGGALIEALCAQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAARGEWFINYRMEKRVALR
>CP016344.1|AXA31786.1|4358747_4360205_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFAKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDNVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHADELDLRLVDFNGGTLRNAIPREAYATVTVAADKADALKALVNTYQALLKNELEAKEKNLVVLLEAVDNDKAALTQASRDGFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>CP016344.1|AXA31785.1|4358031_4358490_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>CP016344.1|AXA31784.1|4356681_4357926_-|fermentation/respiration-switch-protein
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGGSPITGFLHMPKGDGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWVDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFDHALRQIARWINHRFG
>CP016344.1|AXA31783.1|4356225_4356624_-|sigma-factor-binding-protein-Crl
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIDDPEVSDRLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>CP016344.1|AXA31782.1|4355447_4356140_+|transcriptional-regulator
MTAIPQATAIDGYRWLKNDIIRGVYQPDEKLRMSLLTSRYELGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARAHLLNKLESCDASERLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEMLEDKHVQHQTLLDAILARDAERASALMREHLLTPIPIIQQAMAGKLSPQAG
>CP016344.1|AXA31781.1|4354001_4355402_+|GABA-permease
MGQLSQSQDLGAGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAIILHSWVPGVPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIVLGAVAITGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFIVVALIPWNMPGLKSIGSYRSVLELLHIPYAKLIMDGVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILQAQGGEIRLRMWLYPYLTWLVIAFITFVLVVMLFRPAQQLEVISTGLLALGIICTVPIMSRWKKLVLWQKLPLQNTR
>CP016344.1|AXA31780.1|4352582_4353866_+|4-aminobutyrate--2-oxoglutarate-transaminase
MNSNKAMMARRSDAVPRGVGQIHPIFAERAENCRVWDVEGREYLDFAGGIAVLNTGHLHPQVVAAVEDQLKKLSHTCFQVLAYEPYLALCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATGRSGAIAFTGAYHGRTHYTLSLTGKVNPYSAGMGLMPGHVYRALYPCALHGVSDDEAIASIHRIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLQIFEQENLLEKANQLGDTLRQGLLAIAEEHPEIGDVRGLGAMIAIELFEEGDRSKPNARLTADIVARARDKGLILLSCGPYYNVLRILVPLTIEEAQIEQGLKIIADCFTEAKQA
>CP016344.1|AXA31790.1|4362993_4363209_-|hypothetical-protein
MLTVFVATFVIFALVILGMSLGYLVKRKSIQGSCGGISSLGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>CP016344.1|AXA31791.1|4363211_4364435_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILAARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTIKEGGGDILPTELSHITKREAKEGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRVPDGEAVPFRAGGYIQIECPSHKVAYADFDIPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDDEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENIMLDDFGG
>CP016344.1|AXA32862.1|4364447_4365044_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MAHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>CP016344.1|AXA31792.1|4365050_4365689_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>CP016344.1|AXA31793.1|4365681_4366476_-|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVAGLIQPGMDADAVAETFAARISPRLVNLATGELLKKDPAKFNQAQALKDPQQSIALDASQDTAGIKRRSNLAEIYLVRDAQQKIEQMVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFIGKQVLDDNGMPALRVVKGGARAGDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGGLNNG
>CP016344.1|AXA31794.1|4366468_4367707_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGAEQLQQVIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYITVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGIPVSWMDAFLGNIPGSIGEVSTLMILIGGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFSMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>CP016344.1|AXA31795.1|4367710_4369054_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKTPGVYFTAPASGVVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGLWTALRTRPFSKTPRPGSVPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGKLGGHPAGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGQLFLEGELNCERVIALGGPQVKSPRLVKTTLGASLDDLLAGELEEGENRVISGSVLSGTRAHGPHAFLGRFHLQVSVVREGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDSDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTQIEQEG
>CP016344.1|AXA31796.1|4369010_4369220_+|hypothetical-protein
MPAMGKSSPFVILIISLAGIRNLNPDAGRGQLIDRMAEKKGRNGASGAHDGREASFLTLVMNRRKCNIS
>CP016344.1|AXA31797.1|4369465_4370206_+|transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPVSKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYSVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPIVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>CP016344.1|AXA31798.1|4370176_4370944_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGMVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGERVV

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Crispr_ID: CP016344_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016344_2

4648167-4648272

Orphan

Consensus_repeat	Method
GGGAGAGGGTTGGGGTGAGGGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP016344_2

>merge|CP016344|2|4648167-4648272|CRISPRCasFinder
GGGAGAGGGTTGGGGTGAGGGCAAGGTAAATGCAAAAAGGCAACGCAAGTTGCCTTTTTTAGGGTTTGCTCCCTCTCCCACCGGGAGAGGGTTGGGGTGAGGGCAA

>CP016344|2|2|4648167-4648272|CRISPRCasFinder
GGGAGAGGGTTGGGGTGAGGGCAA	GGTAAATGCAAAAAGGCAACGCAAGTTGCCTTTTTTAGGGTTTGCTCCCTCTCCCACC
GGGAGAGGGTTGGGGTGAGGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
CP016344.1\|AXA32020.1\|4641731_4642601_+\|right-oriC-binding-transcriptional-activator	unknown	unknown	gnl\|CDD\|185076
CP016344.1\|AXA32030.1\|4652656_4653673_+\|lipoate--protein-ligase	unknown	unknown	gnl\|CDD\|179655
CP016344.1\|AXA32022.1\|4643358_4643874_+\|inosine/xanthosine-triphosphatase	unknown	unknown	gnl\|CDD\|235336
CP016344.1\|AXA32028.1\|4650933_4651905_-\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|182988
CP016344.1\|AXA32016.1\|4637503_4638862_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236960
CP016344.1\|AXA32027.1\|4649541_4650924_-\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|273067
CP016344.1\|AXA32032.1\|4654575_4655799_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
CP016344.1\|AXA32034.1\|4657287_4658088_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|235387
CP016344.1\|AXA32031.1\|4653753_4654473_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP016344.1\|AXA32017.1\|4638922_4640347_-\|two-component-system-sensor-histidine-kinase-CreC	unknown	unknown	gnl\|CDD\|236846
CP016344.1\|AXA32029.1\|4652009_4652657_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236885
CP016344.1\|AXA32026.1\|4648287_4649520_-\|trifunctional-nicotinamide-nucleotide-adenylyltransferase/ribosylnicotinamide-kinase/transcriptional-regulator-NadR	unknown	unknown	gnl\|CDD\|236151
CP016344.1\|AXA32023.1\|4643860_4644190_-\|Trp-operon-repressor	unknown	unknown	gnl\|CDD\|179289
CP016344.1\|AXA32025.1\|4646444_4648112_+\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
CP016344.1\|AXA32019.1\|4641048_4641522_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236752
CP016344.1\|AXA32018.1\|4640346_4641036_-\|two-component-system-response-regulator-CreB	unknown	unknown	gnl\|CDD\|236838
CP016344.1\|AXA32033.1\|4655851_4657240_-\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
CP016344.1\|AXA32021.1\|4642597_4643245_-\|phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|179583
CP016344.1\|AXA32024.1\|4644278_4646216_-\|murein-transglycosylase	unknown	unknown	gnl\|CDD\|183236
CP016344.1\|AXA32035.1\|4658483_4659269_-\|deoxyribonuclease-YjjV	unknown	unknown	gnl\|CDD\|171118

Protein	Function_ID	Function_description	E-value
CP016344.1\|AXA32020.1\|4641731_4642601_+\|right-oriC-binding-transcriptional-activator	gnl\|CDD\|185076	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA.	0
CP016344.1\|AXA32030.1\|4652656_4653673_+\|lipoate--protein-ligase	gnl\|CDD\|179655	PRK03822, lplA, lipoate-protein ligase A; Provisional.	0
CP016344.1\|AXA32022.1\|4643358_4643874_+\|inosine/xanthosine-triphosphatase	gnl\|CDD\|235336	PRK05074, PRK05074, non-canonical purine NTP phosphatase.	7.98477e-112
CP016344.1\|AXA32028.1\|4650933_4651905_-\|phosphoserine-phosphatase-SerB	gnl\|CDD\|182988	PRK11133, serB, phosphoserine phosphatase; Provisional.	0
CP016344.1\|AXA32016.1\|4637503_4638862_-\|hypothetical-protein	gnl\|CDD\|236960	PRK11715, PRK11715, cell envelope integrity protein CreD.	0
CP016344.1\|AXA32027.1\|4649541_4650924_-\|DNA-repair-protein-RadA	gnl\|CDD\|273067	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus (SP:P45266) and in Listeria monocytogenes (SP:Q48761) . for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). [DNA metabolism, DNA replication, recombination, and repair].	0
CP016344.1\|AXA32032.1\|4654575_4655799_-\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
CP016344.1\|AXA32034.1\|4657287_4658088_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|235387	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional.	0
CP016344.1\|AXA32031.1\|4653753_4654473_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	7.43873e-174
CP016344.1\|AXA32017.1\|4638922_4640347_-\|two-component-system-sensor-histidine-kinase-CreC	gnl\|CDD\|236846	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.	0
CP016344.1\|AXA32029.1\|4652009_4652657_+\|hypothetical-protein	gnl\|CDD\|236885	PRK11246, PRK11246, YtjB family periplasmic protein.	1.09556e-147
CP016344.1\|AXA32026.1\|4648287_4649520_-\|trifunctional-nicotinamide-nucleotide-adenylyltransferase/ribosylnicotinamide-kinase/transcriptional-regulator-NadR	gnl\|CDD\|236151	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR.	0
CP016344.1\|AXA32023.1\|4643860_4644190_-\|Trp-operon-repressor	gnl\|CDD\|179289	PRK01381, PRK01381, trp operon repressor.	2.25263e-51
CP016344.1\|AXA32025.1\|4646444_4648112_+\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
CP016344.1\|AXA32019.1\|4641048_4641522_-\|hypothetical-protein	gnl\|CDD\|236752	PRK10756, PRK10756, protein CreA.	4.50228e-120
CP016344.1\|AXA32018.1\|4640346_4641036_-\|two-component-system-response-regulator-CreB	gnl\|CDD\|236838	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional.	2.65201e-155
CP016344.1\|AXA32033.1\|4655851_4657240_-\|thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
CP016344.1\|AXA32021.1\|4642597_4643245_-\|phosphoglycerate-mutase	gnl\|CDD\|179583	PRK03482, PRK03482, phosphoglycerate mutase GpmB.	6.63469e-161
CP016344.1\|AXA32024.1\|4644278_4646216_-\|murein-transglycosylase	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	0
CP016344.1\|AXA32035.1\|4658483_4659269_-\|deoxyribonuclease-YjjV	gnl\|CDD\|171118	PRK11449, PRK11449, metal-dependent hydrolase.	3.80038e-150

>CP016344.1|AXA32025.1|4646444_4648112_+|energy-dependent-translational-throttle-protein-EttA
MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDTEIEGEARPQPGIKIGYLPQEPQLNPEHTVRESVEEAVAEVVNALKGLDEVYAKYAEPDADFDKLAAQQGKFEEIIQAHDGHNLNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNNVEYQKRNETNELFIPPGARLGDKVLEVSHLRKSYGDRVLIDDLSFSVPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNVLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKVEFFEGNFTEYEEYKKRTLGADALEPKRIKYKRIAK
>CP016344.1|AXA32024.1|4644278_4646216_-|murein-transglycosylase
MEKAKKMAWHLLAASVGLLTLSQLAHADSLDEQRNRYAQIKQAWDNRQMDVVDQLMPTLSTYPLYPYLQYRQITDDLMNQPALVVKNFIDANPTLPPARSLRSRFVNELARRSDWRGLLAFSPDKPTSTEAQCNYYYAKLSVGQSQEAWSGAKDLWLTGKNQPGACEPLFSAWRDSGQQDPLAYLERIRLAMKAGNIGLVKSLAQQMPGNYQSIASAVVALANDPNSVLTFARTTGATDFTRQMAAVAFASVARQDVENARLMIPSLVQAQQLNEDQTQELRDIVAWRLMGTDVTEEQAIWRDDAIMRSQSTPLVERRVRMALGTGDRHGLNTWLARLPMEAKEKDEWRYWQADLLLERGRDEEAQAILRSLMQQRGFYPMVAAQRLGEEYTFRIDKASGTIDPALASGPEMARVRELMYWNMDNTARTEWANLVTSRTKSQQAQLARYAFDQHWWDLSVQATIAGKLWDQLEERFPLAYNDLFARYISGKDIPQSYAMAIARQESAWNPKVRSPVGASGLMQIMPGTATHTVSMFSIPGYSGPSQLLDPETNINIGTSYLQYVYQQFGNNRIYASAAYNAGPGRVRTWQGNSAGRIDAVAFIESIPFSETRGYVKNVLSYDAYYRYFMGQQDKLFSDAEWRQRY
>CP016344.1|AXA32023.1|4643860_4644190_-|Trp-operon-repressor
MTQQSPYSAAVAEQRHQEWLRFVALLQQAYAEDLHLPLLQLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNSLKSAPAELRQWLEQTLLASDK
>CP016344.1|AXA32022.1|4643358_4643874_+|inosine/xanthosine-triphosphatase
MHHVVSATTNPAKIQAILQAFNEIFGEGSCHIESVSVESGVPEQPFGSEETRAGARNRVANARLVQPSADFWVAIEAGIDDGSTFSWVVIESADRRGEARSATLPLPEVILEQVRAGEALGPVMSQYTGIDQIGRKEGAIGVFTGGKLTRSSVYHQAVVLALSPFHNAIYR
>CP016344.1|AXA32021.1|4642597_4643245_-|phosphoglycerate-mutase
MLQVYLVRHGETQWNAERRIQGQSDSPLTAHGERQAWQVGERARTLGITHIITSDLGRTRRTAEIIAEACGCSVIADARLRELDMGVLEKRHIDSLSDEEEGWRRQLVNGTPDGRIPQGESMQELSERMHAALASCLELPAGSRPLLVSHGIALGCLVSTILGLPAYAERRLRLRNCSISRVDYQQSPWLASGWVVETAGDVSHLDAPAMDELQR
>CP016344.1|AXA32020.1|4641731_4642601_+|right-oriC-binding-transcriptional-activator
MDQAGIIRDLLSWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFSLTPALYRRSPDWSSFGMRPPLRLGEFTLPKHEFVALPTTQLLGVTQSYTCKLEEISDFRNQMRVQFWRDFLGNSPSIPPVLYGLHEPRPSLEKDDEQEVFYTTALTPEMANGHLQNAHPVTLEGGEYVMFTYEGLGTGLQEFILTVYGTCMPMLNLTRRKGLDIERFYPEDENRDQATPIQLRCEYLIPIRR
>CP016344.1|AXA32019.1|4641048_4641522_-|hypothetical-protein
MKYKKFAMGLLLLAGCQMAQAEQIGSVDTVFKWLGPDHKIVVEAFDDPDVQNVTCYISRAKTGGIKGGLGLAEDTSDAAISCQQVGPIELTDKIKNGKSQGDVVFQKRTSLVFKKLQVVRFYDAKRNALVYLTYSDKVVDGSPKNAISAVPIMPWNK
>CP016344.1|AXA32018.1|4640346_4641036_-|two-component-system-response-regulator-CreB
MQQPRIWLVEDEQSIADTLVYPLQQEGFQVTVFGRGLPALEAAAHQAPDVAILDVGLPDISGFELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQKFAAPSPVVRVGEFVLDEQAASISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELVWSDAWESLDRTVDTHIKTLRAKLRAVNPEVTPINTHRGMGYSLGRG
>CP016344.1|AXA32017.1|4638922_4640347_-|two-component-system-sensor-histidine-kinase-CreC
MRIGMRLLLGYFLIVAIAAWFVLSIFVQEVKPGVRRATEGTLNDTATLLAALAREDLQAANPQQGRLAQAFQRLNQQPINAHIGGIKKVRNEYRVYLTDARGKVVFDSSGQATGQDYSRWNDVWLTLRGQYGARSTRSDPHDETSSVMYIAAPVMDKGRIIGVLSVGKPNLAMTPVIKRSERRILWAGGALLGIALLIGVGVVWWINFSIGKLVRYADSVTAERPLPLPEVGSSELRKLAQALESMRVKLEGKNAIENYVYDLTHELKSPLAAIRGAAEILREGPPPEVAARFTDNILAQNTRMQLLVERLLHQARLESRLEIKQQPVSIDALYQRLTEERDIALAAKAITLRWRESGMLVNGDGELLAQALGNLLDNAIDFTPQGGEIALAAEKRNEEVQLSVIDNGRGIPDYALERIFERFYSLPREDGHKSSGLGLAFVREVARLHHGDINLHNRPEGGVVATLRLHRPFT
>CP016344.1|AXA32016.1|4637503_4638862_-|hypothetical-protein
MLKSPLFWKITTLIGCVVLLSLPLMMVRELINERADYRSEVVDAIEQSTSGSQKLAGPLIAIPITETLTRMENQKEVNYQRSWEYYWLPESLAVTGKQTVESRRVGIYSGQVWHNALQIKASFDPLRLAALRKTNIVLGPPRLVVSVGDARGIGAIHAPEVNGNVLSVEPGLGISGDGAGIHMPMPALAEDNKPLEIAFSLELNGTGEFSLVPIGRNSELQLTSNWPHPGFLGSFLPTQREVSAAGYRAHWQSSWFANDMGSYFKDDMEIPWSRLPAFSADVMTLADQYQLTDRATKYAILLIGLTFMAFFVFESLTHRPLHPMQYLLVGLSLVLFYLVLLALSEHVGFTAAWLAASLSGAVMNGVYLQAVLRGWRNSLLFVAALLLLDGVMWFLLHSEDSALLLGTGVLALALSVLMFLTRRVDWYALSLPKGSAPPPPAADDDKLRLWKE
>CP016344.1|AXA32026.1|4648287_4649520_-|trifunctional-nicotinamide-nucleotide-adenylyltransferase/ribosylnicotinamide-kinase/transcriptional-regulator-NadR
MSSFDYLKSAIKQKGCTLQQVAEASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGLEFPRRQKSVGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGYDDTRDRELFEESAMSQQPTVPDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSHGIRAFMSEKGIEPNRIYTSEEADAPQYLEHLGIETVLIDPKRTFMNISGGQIRENPFRYWEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVSTQAFCLKYEGREHPFVQALIDEYRFDLVILLENNTPWVADGLRSLGSSVDRKEFQSLLVSLLKENEIEFVHVKESDYDARFLRCVELVKQLMGEQG
>CP016344.1|AXA32027.1|4649541_4650924_-|DNA-repair-protein-RadA
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEMRIAASPQVARNERLSGYAGNAGVSKVQKLSDISLEALPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAEGMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICQIADEEKPQLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEITSGSLVMVVWEGTRPLLVEIQALVDHSMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKVPEGMQIFGVKKLSDALSVFDDL
>CP016344.1|AXA32028.1|4650933_4651905_-|phosphoserine-phosphatase-SerB
MPNSLTWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYGRGLNKRRLTDWQRELGAALVIVASWVVEDYQVIRLAGSLTPRATRLAHEAGLDVAPLGKIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGELVSEVTERAMRGELDFTASLRQRVATLKDADASILLQVRDALPLMPGLAQLVLKLETLGWKVAIASGGFTFFAEYLRDKLHLDAVFANELEIRDGKLTGNVLGDIVDAKYKANTLRKLAEKYEIPTAQTVAIGDGANDLPMIKAAGLGIAYHAKPKVNEQAEVTIRHADLMGVFCILSGSMNQK
>CP016344.1|AXA32029.1|4652009_4652657_+|hypothetical-protein
MVRAKLKFRLHRAVIVLICLALLVALMQGASWFSQNSQKQRNPQLEELARTLAQQVVLNLVPLMRSETPDEKRINQLLTQLTHNSRVLDAGVYDEQGDLVARSGESVEVRDRLALDGKKAGGYFNQQIVEPVPGKNGPLGYLRLTLDTHTLATEAKQVDNTTNILRLMLLLSLAIGVVLTRTLLQGKRTRWQQSPFLLTANKPVEDEDDEKKGNL
>CP016344.1|AXA32030.1|4652656_4653673_+|lipoate--protein-ligase
MSTLRLLLSDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDHVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTVSTAIVLAALNSLGVTAEASGRNDLVVKTDSGDRKVSGSAYRETIDRGFHHGTLLLNADLSRLANYLNPDQKKLKAKGITSVRGRVANLVELLPGITHQHICEAIQEAFFSHYGERVDAEVISPDNTPDLPNFAETFARQSSWEWNFGQAPAFSHLLDERFRWGGVELHFDVEKGHITRTQAFTDSLNPAPLEALAARLVGCQYRAEVLQQQCEALVGDFPEQEAELKELSAWIAGAVR
>CP016344.1|AXA32031.1|4653753_4654473_-|purine-nucleoside-phosphorylase
MATPHINAEMGDFADVVLMPGDPLRAKHIAETFLEDVREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVREDVKLRDVVIGMGACTDSKVNRLRFKDHDFAAIADFGMVRNAVDAAKALGVDARVGNIFSADLFYTPDPSMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALESVLLGDKE
>CP016344.1|AXA32032.1|4654575_4655799_-|phosphopentomutase
MKRAFIMVLDSFGIGATEDADRFGDVGADTMGHIAEACAKGEADNGRKGPLNLPNLTRLGLVKAHEGSTGKIAAGMDGNAEVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFDWGYFSDHENNFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKNGHVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDETIVFTNFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMELVGEDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTIAKYFGTSDMEYGKAMF
>CP016344.1|AXA32033.1|4655851_4657240_-|thymidine-phosphorylase
MPVGRIRRSRRHPAIYSLWEVTVFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMSMPERVSLTMAMRDSGTVLNWKSLNLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYVPMISGRGLGHTGGALDKLEAIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSAALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVTMALCVEMLISGKLAADDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTDFVENYDHYLPTAMLSKAVYADTEGFISAMDTRALGMAVVSMGGGRRQASDTIDYSVGFTDMARLGDHVDGQRPLAVIHAKDENSWQEAAKAVKAAIKLDDKAPEITPTVYRRITE
>CP016344.1|AXA32034.1|4657287_4658088_-|deoxyribose-phosphate-aldolase
MTPAEYEMTDLKASSLRALKLMDLTTLNDDDTNEKVIALCHQAKTPVGNTAAVCIYPRFIPIARKTLNEQGTPDIRIATVTNFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALIAGNEQVGFELVKACKEACAAANVLLKVIIETGELKEEALIRKASEISIKAGADFIKTSTGKVPVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRSAEDAQQFLAIADELFGADWADSRHYRFGASSLLASLLKALGHGDGKSASSY
>CP016344.1|AXA32035.1|4658483_4659269_-|deoxyribonuclease-YjjV
MSHRFIDTHCHFDFPPFAEDETASLARAAQAGVGQIIVPAISAARFNRVLALAAQHEALYAALGMHPIVIEQHADEGLAQLERCLSLRPPKLVAVGEIGLDLYRDDPQFDRQQALLEEQLRLAKRYDLPVILHSRRTHDKLAMLLKKHALPRTGVVHGFAGSLQQAERFVQLGYKIGVGGTITYPRASKTREVMARLPLSALLLETDAPDMPLNGFQGQPNRPEQVARVFDALCELRAEPAPTIEAAVMANTKSLFSALAG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1625667 : 1632595

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXA32740.1\|1625667_1626531_+	peptide ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.0e-07	22.5
AXA29430.1\|1626541_1627315_+	peptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-26	37.2
AXA32741.1\|1627554_1628448_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	2.1e-15	29.8
AXA29431.1\|1628693_1630055_-	U32 family peptidase	Q6DW11	Phage_TP	1.0e-207	94.8
AXA29432.1\|1630373_1631096_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
AXA29433.1\|1631092_1632595_-	two-component system sensor histidine kinase BaeA	W8CYF6	Bacillus_phage	8.6e-30	28.3

DBSCAN-SWA_2

1674977 : 1687246

Enterobacteria_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXA29457.1\|1674977_1676384_+	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.7
AXA29458.1\|1676605_1677670_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.0e-105	55.0
AXA29459.1\|1677696_1678566_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	7.5e-111	66.7
AXA29460.1\|1678597_1679488_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	33.2
AXA29461.1\|1679502_1680057_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	7.3e-51	57.6
AXA29462.1\|1680238_1681405_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	7.0e-112	54.7
AXA29463.1\|1682349_1683354_-	protein CapI	E3T4Y8	Cafeteria_roenbergensis_virus	1.2e-30	29.2
AXA29464.1\|1684431_1685847_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.4e-53	31.0
AXA29465.1\|1685869_1687246_+	phosphomannomutase	A0A127AWJ1	Bacillus_phage	1.1e-31	25.9

DBSCAN-SWA_3

2781062 : 2787484

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXA30437.1\|2781062_2782151_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	6.3e-208	98.3
AXA30438.1\|2782237_2782498_-	hypothetical protein	A0A077SK33	Escherichia_phage	4.6e-40	96.5
AXA30439.1\|2782791_2783652_+	class A beta-lactamase	A0A077SL40	Escherichia_phage	5.1e-144	90.2
AXA30440.1\|2783669_2784431_-	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	2.1e-133	99.2
AXA30441.1\|2784691_2785594_+	oxidoreductase	A0A077SLF7	Escherichia_phage	5.5e-157	98.3
AXA30442.1\|2785605_2786871_+	hypothetical protein	A0A077SLJ7	Escherichia_phage	2.0e-229	97.6
AXA30443.1\|2786863_2787484_+	aldolase	A0A077SK32	Escherichia_phage	9.7e-113	97.6

DBSCAN-SWA_4

3284882 : 3343879

Klebsiella_phage(54.55%)

portal,holin,head,integrase,tRNA,capsid,tail,terminase

attL 3294536:3294551|attR 3349511:3349526

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXA30874.1\|3284882_3285941_-	diguanylate cyclase AdrA	A0A127AWB9	Bacillus_phage	8.0e-14	31.7
AXA30875.1\|3286363_3287788_-\|tail	phage tail protein	A0A0P0IDN1	Klebsiella_phage	1.2e-94	48.0
AXA30876.1\|3287849_3300440_-	hypothetical protein	Q6UAW1	Klebsiella_phage	0.0e+00	48.9
3294536:3294551	attL	NA	NA	NA	NA
AXA30877.1\|3300502_3301096_-\|tail	phage tail protein	Q6UAW2	Klebsiella_phage	6.3e-85	80.2
AXA32821.1\|3301112_3301403_-	hypothetical protein	A0A0S2SY43	Pseudomonas_phage	4.8e-06	45.9
AXA30878.1\|3301986_3302697_-	peptidase P60	Q6UAW4	Klebsiella_phage	1.0e-134	89.8
AXA30879.1\|3302698_3303454_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	6.7e-124	80.1
AXA30880.1\|3303450_3303789_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	2.4e-57	88.4
AXA30881.1\|3303788_3307145_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	87.2
AXA30882.1\|3307377_3307743_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
AXA30883.1\|3307800_3308262_-\|tail	phage tail protein	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
AXA30884.1\|3308293_3308695_-	hypothetical protein	Q6UAX1	Klebsiella_phage	1.7e-62	94.0
AXA30885.1\|3308691_3309081_-	hypothetical protein	Q6UAX2	Klebsiella_phage	3.3e-58	86.8
AXA30886.1\|3309061_3309400_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
AXA30887.1\|3309396_3309714_-	hypothetical protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
AXA32822.1\|3309694_3309892_-	hypothetical protein	Q6UAX5	Klebsiella_phage	1.8e-20	78.0
AXA30888.1\|3310095_3311382_-\|capsid	capsid protein	Q6UAX6	Klebsiella_phage	1.3e-204	84.3
AXA30889.1\|3311459_3312380_-	serine peptidase	Q6UAX7	Klebsiella_phage	5.6e-149	88.2
AXA30890.1\|3312416_3313676_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	3.1e-222	89.8
AXA30891.1\|3313848_3315570_-\|terminase	terminase	Q7Y413	Yersinia_phage	7.2e-190	57.2
AXA32823.1\|3316252_3316681_-	hypothetical protein	Q6UAS0	Klebsiella_phage	8.1e-42	62.0
AXA30892.1\|3317644_3317869_+	hypothetical protein	NA	NA	NA	NA
AXA30893.1\|3317907_3318360_-	hypothetical protein	NA	NA	NA	NA
AXA30894.1\|3319294_3319645_-	hypothetical protein	A0A0K2FIW3	Enterobacter_phage	3.5e-11	36.8
AXA30895.1\|3319641_3320139_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.1e-77	84.0
AXA30896.1\|3320138_3320354_-\|holin	holin	A5LH82	Enterobacteria_phage	7.9e-30	87.3
AXA30897.1\|3321459_3322062_-	hypothetical protein	H9C175	Pectobacterium_phage	6.4e-77	68.6
AXA30898.1\|3322078_3323110_-	hypothetical protein	A0A291AWV9	Escherichia_phage	6.6e-98	50.4
AXA30899.1\|3323109_3323313_-	hypothetical protein	NA	NA	NA	NA
AXA30900.1\|3323309_3323702_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	2.3e-11	35.6
AXA30901.1\|3324044_3324278_-	XRE family transcriptional regulator	K7PM44	Enterobacteria_phage	6.4e-25	69.7
AXA30902.1\|3325224_3326325_+	hsdR	NA	NA	NA	NA
AXA30903.1\|3326526_3327612_+	DUF91 domain-containing protein	NA	NA	NA	NA
AXA30904.1\|3328160_3329141_-	hypothetical protein	NA	NA	NA	NA
AXA30905.1\|3329133_3330117_-	chromosome segregation protein SMC	NA	NA	NA	NA
AXA30906.1\|3330625_3331066_-	hypothetical protein	NA	NA	NA	NA
AXA32824.1\|3331079_3331544_-	replication protein	A0A0U2JGJ0	Escherichia_phage	4.1e-63	71.5
AXA30907.1\|3332600_3333155_-	hypothetical protein	NA	NA	NA	NA
AXA32825.1\|3333503_3333908_+	transcriptional regulator	H6WRX4	Salmonella_phage	2.1e-39	63.6
AXA30908.1\|3334190_3334472_+	hypothetical protein	NA	NA	NA	NA
AXA30909.1\|3334886_3335171_+	hypothetical protein	NA	NA	NA	NA
AXA30910.1\|3335714_3335909_+	DUF1482 domain-containing protein	NA	NA	NA	NA
AXA30911.1\|3335951_3336296_+	transcriptional regulator	NA	NA	NA	NA
AXA30912.1\|3336437_3338576_+	exodeoxyribonuclease VIII	S4TNL0	Salmonella_phage	2.8e-98	41.9
AXA30913.1\|3338628_3338874_+	excisionase	NA	NA	NA	NA
AXA30914.1\|3338854_3339982_+\|integrase	integrase	O21925	Phage_21	3.3e-119	58.4
AXA30915.1\|3340099_3341350_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
AXA30916.1\|3341590_3342241_+	23S rRNA pseudouridylate synthase	NA	NA	NA	NA
AXA30917.1\|3342257_3342716_+	NUDIX hydrolase	NA	NA	NA	NA
AXA32826.1\|3342772_3343879_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
3349511:3349526	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3593659 : 3603107

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXA31123.1\|3593659_3595381_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	4.5e-14	34.0
AXA31124.1\|3595420_3596125_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AXA31125.1\|3596476_3596695_+	translation initiation factor IF-1	NA	NA	NA	NA
AXA31126.1\|3596813_3599093_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.7e-165	42.0
AXA31127.1\|3599123_3599441_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
AXA31128.1\|3599766_3599988_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
AXA31129.1\|3600054_3601995_-	macrolide ABC transporter permease/ATP-binding protein MacB	G9BWD6	Planktothrix_phage	3.8e-38	41.0
AXA31130.1\|3601991_3603107_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_6

4759998 : 4818193

Shigella_phage(18.18%)

holin,tRNA,transposase,integrase

attL 4765403:4765417|attR 4820189:4820203

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXA32128.1\|4759998_4763385_+\|holin	choline trimethylamine-lyase	A0A1S6UAD4	Serratia_phage	9.7e-05	45.0
AXA32129.1\|4763470_4764418_+\|holin	choline TMA-lyase-activating enzyme	NA	NA	NA	NA
AXA32130.1\|4764430_4764829_+	BMC domain-containing protein	NA	NA	NA	NA
AXA32131.1\|4764825_4765446_+	phosphate propanoyltransferase	NA	NA	NA	NA
4765403:4765417	attL	NA	NA	NA	NA
AXA32132.1\|4765458_4766124_+	hypothetical protein	NA	NA	NA	NA
AXA32133.1\|4766155_4766569_+	transporter	NA	NA	NA	NA
AXA32134.1\|4766586_4766916_+	multidrug transporter	NA	NA	NA	NA
AXA32135.1\|4767116_4768124_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
AXA32136.1\|4768172_4769567_-	diguanylate cyclase	G3MA91	Bacillus_virus	1.2e-12	31.7
AXA32137.1\|4769970_4771038_+	hypothetical protein	NA	NA	NA	NA
AXA32138.1\|4771034_4773794_+	multidrug ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.6e-21	32.2
AXA32139.1\|4773793_4774918_+	hypothetical protein	NA	NA	NA	NA
AXA32140.1\|4774958_4775276_-	hypothetical protein	NA	NA	NA	NA
AXA32141.1\|4775599_4775875_-	hypothetical protein	NA	NA	NA	NA
AXA32142.1\|4781838_4782960_+	50S ribosomal protein L16 arginine hydroxylase	NA	NA	NA	NA
AXA32143.1\|4783023_4784457_-	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	9.1e-13	27.6
AXA32144.1\|4784446_4785130_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	7.9e-31	36.0
AXA32878.1\|4785302_4786688_+	copper transporter	NA	NA	NA	NA
AXA32145.1\|4786705_4787050_+	copper-binding protein	NA	NA	NA	NA
AXA32146.1\|4787094_4788357_+	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
AXA32147.1\|4788368_4791518_+	cation transporter	S5VTK5	Leptospira_phage	5.8e-60	22.3
AXA32148.1\|4791590_4791938_+	DNA-binding protein	NA	NA	NA	NA
AXA32149.1\|4791947_4792481_-	hypothetical protein	A0A1W6JNX6	Morganella_phage	8.2e-52	59.6
AXA32150.1\|4792597_4793326_+	helix-turn-helix-type transcriptional regulator	Q9EYF2	Enterobacteria_phage	1.2e-45	46.9
AXA32151.1\|4793560_4793995_+	transcriptional regulator	NA	NA	NA	NA
AXA32152.1\|4793991_4794711_+	short-chain dehydrogenase	NA	NA	NA	NA
AXA32153.1\|4794707_4795967_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
AXA32154.1\|4795968_4796691_+	chromosome partitioning protein ParA	NA	NA	NA	NA
AXA32155.1\|4796687_4797908_+	cyclopropane-fatty-acyl-phospholipid synthase	NA	NA	NA	NA
AXA32156.1\|4797904_4798390_+	hypothetical protein	NA	NA	NA	NA
AXA32157.1\|4798386_4798911_+	hypothetical protein	NA	NA	NA	NA
AXA32158.1\|4798907_4799459_+	hypothetical protein	NA	NA	NA	NA
AXA32159.1\|4799455_4800415_+	hypothetical protein	NA	NA	NA	NA
AXA32160.1\|4800545_4801928_-	lactam utilization protein LamB	NA	NA	NA	NA
AXA32161.1\|4802197_4803517_-	xylose isomerase	NA	NA	NA	NA
AXA32162.1\|4803928_4805383_+	Na+/xyloside symporter related transporter	NA	NA	NA	NA
AXA32163.1\|4805441_4807121_+	beta-xylosidase	NA	NA	NA	NA
AXA32164.1\|4807203_4807842_-	HNH endonuclease	NA	NA	NA	NA
AXA32165.1\|4808021_4808891_+	restriction endonuclease	NA	NA	NA	NA
AXA32166.1\|4809106_4809337_-\|transposase	transposase	U5P429	Shigella_phage	2.0e-31	88.2
AXA32167.1\|4809974_4810253_-\|transposase	transposase	U5P4I9	Shigella_phage	9.0e-34	93.8
AXA32168.1\|4810538_4811255_+	hypothetical protein	NA	NA	NA	NA
AXA32169.1\|4811508_4811793_+\|transposase	transposase	NA	NA	NA	NA
AXA32170.1\|4812393_4813353_+	hypothetical protein	NA	NA	NA	NA
AXA32171.1\|4816909_4818193_+\|integrase	integrase	A0A059XK29	uncultured_phage	3.7e-05	44.2
4820189:4820203	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP016344

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection