CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP030007	Enterobacter hormaechei subsp. xiangfangensis strain Pb204 chromosome, complete genome	4 crisprs	RT,PD-DExK,DinG,DEDDh,cas3,cas7f,cas5f,cas8f,cas3f,cas1,WYL,csa3	1	9	5
CP030008	Enterobacter hormaechei subsp. xiangfangensis strain Pb204 plasmid pPb204001, complete sequence	0 crisprs	NA	0	0	0
CP030009	Enterobacter hormaechei subsp. xiangfangensis strain Pb204 plasmid pPb204002, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP030007_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030007_1

3252025-3252715

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGCAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGCAC	CRT
TTTCTAAGCTGCCTGTACGGCAGTGCAC	PILER-CR

11 spacers

cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of CP030007_1

>merge|CP030007|1|3252025-3252715|CRISPRCasFinder,CRT,PILER-CR
TTATAAAACTGCCTGTTCGGCAGTGCACTCACTCGTCGCGCCATAGAGCAATCGCAGGAATTTCTAAGCTGCCTGTACGGCAGTGCACATTAACTCATTTGTGCAAATGGGCATTGAGTGTTTCTAAGCTGCCTGTACGACAAGTGCACAAATAAGCGTCACGCAGCTTGAAACGATAATCTTTCTAAGCTGCCTGTACGGCAGTGCACTCCTGATAGAAGAACGGCGTAATCGCTTTTTTTTTCTAAGCTGCCTGTACGGCAGTGCACCGCACCGTAATGCATCAAACGCTGGGTGACTATTTCTAAGCTGCCTGTACGGCAGTGCACACACCCGCAGAGTGAACGGACACTATTTGTCTTTTCTAAGCTGCCTGTACGGCAGTGCACAGCCGCCGCAGCAGCGATGCGCCGTTCCGACGTTTCTAAGCTGCCTGTACGGCAGTGCACATATTGAACAGTCCCGCATTTTCGATTTGCAATTTCTAAGCTGCCTGTACGGCAGTGCACCCGACAATGCCGAAGATGTATTGCCAGCCTGATTTCTAAGCTGCCTGTACGGCAGTGCACGATGCGCACCGGTGAGATGAATGCATATGTGGTTTCTAAGCTGCCTGTACGGCAGTGCACGTGCAGTAACCGGAATGGATATCCAGTCATGCAGTTTCTAAGCTGCCTGTACGGCAGTGCAC

>CP030007|1|1|3252025-3252715|CRISPRCasFinder
TTATAAAACTGCCTGTTCGGCAGTGCAC	TCACTCGTCGCGCCATAGAGCAATCGCAGGAA
TTTCTAAGCTGCCTGTACGGCAGTGCAC	ATTAACTCATTTGTGCAAATGGGCATTGAGTG
TTTCTAAGCTGCCTGTACGACAAGTGCA	CAAATAAGCGTCACGCAGCTTGAAACGATAATC
TTTCTAAGCTGCCTGTACGGCAGTGCAC	TCCTGATAGAAGAACGGCGTAATCGCTTTTTT
TTTCTAAGCTGCCTGTACGGCAGTGCAC	CGCACCGTAATGCATCAAACGCTGGGTGACTA
TTTCTAAGCTGCCTGTACGGCAGTGCAC	ACACCCGCAGAGTGAACGGACACTATTTGTCT
TTTCTAAGCTGCCTGTACGGCAGTGCAC	AGCCGCCGCAGCAGCGATGCGCCGTTCCGACG
TTTCTAAGCTGCCTGTACGGCAGTGCAC	ATATTGAACAGTCCCGCATTTTCGATTTGCAA
TTTCTAAGCTGCCTGTACGGCAGTGCAC	CCGACAATGCCGAAGATGTATTGCCAGCCTGA
TTTCTAAGCTGCCTGTACGGCAGTGCAC	GATGCGCACCGGTGAGATGAATGCATATGTGG
TTTCTAAGCTGCCTGTACGGCAGTGCAC	GTGCAGTAACCGGAATGGATATCCAGTCATGCAG
TTTCTAAGCTGCCTGTACGGCAGTGCAC

>CP030007|1|1|3252025-3252715|CRT
TTATAAAACTGCCTGTTCGGCAGTGCAC	TCACTCGTCGCGCCATAGAGCAATCGCAGGAA
TTTCTAAGCTGCCTGTACGGCAGTGCAC	ATTAACTCATTTGTGCAAATGGGCATTGAGTG
TTTCTAAGCTGCCTGTACGACAAGTGCA	CAAATAAGCGTCACGCAGCTTGAAACGATAATC
TTTCTAAGCTGCCTGTACGGCAGTGCAC	TCCTGATAGAAGAACGGCGTAATCGCTTTTTT
TTTCTAAGCTGCCTGTACGGCAGTGCAC	CGCACCGTAATGCATCAAACGCTGGGTGACTA
TTTCTAAGCTGCCTGTACGGCAGTGCAC	ACACCCGCAGAGTGAACGGACACTATTTGTCT
TTTCTAAGCTGCCTGTACGGCAGTGCAC	AGCCGCCGCAGCAGCGATGCGCCGTTCCGACG
TTTCTAAGCTGCCTGTACGGCAGTGCAC	ATATTGAACAGTCCCGCATTTTCGATTTGCAA
TTTCTAAGCTGCCTGTACGGCAGTGCAC	CCGACAATGCCGAAGATGTATTGCCAGCCTGA
TTTCTAAGCTGCCTGTACGGCAGTGCAC	GATGCGCACCGGTGAGATGAATGCATATGTGG
TTTCTAAGCTGCCTGTACGGCAGTGCAC	GTGCAGTAACCGGAATGGATATCCAGTCATGCAG
TTTCTAAGCTGCCTGTACGGCAGTGCAC

>CP030007|1|1|3252206-3252715|PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGCAC	TCCTGATAGAAGAACGGCGTAATCGCTTTTTT
TTTCTAAGCTGCCTGTACGGCAGTGCAC	CGCACCGTAATGCATCAAACGCTGGGTGACTA
TTTCTAAGCTGCCTGTACGGCAGTGCAC	ACACCCGCAGAGTGAACGGACACTATTTGTCT
TTTCTAAGCTGCCTGTACGGCAGTGCAC	AGCCGCCGCAGCAGCGATGCGCCGTTCCGACG
TTTCTAAGCTGCCTGTACGGCAGTGCAC	ATATTGAACAGTCCCGCATTTTCGATTTGCAA
TTTCTAAGCTGCCTGTACGGCAGTGCAC	CCGACAATGCCGAAGATGTATTGCCAGCCTGA
TTTCTAAGCTGCCTGTACGGCAGTGCAC	GATGCGCACCGGTGAGATGAATGCATATGTGG
TTTCTAAGCTGCCTGTACGGCAGTGCAC	GTGCAGTAACCGGAATGGATATCCAGTCATGCAG
TTTCTAAGCTGCCTGTACGGCAGTGCAC

Protein	Signature genes	Signature genes Name	Protein_function
CP030007.1\|AWV76814.1\|3263238_3263682_-\|hypothetical-protein	unknown	unknown	unknown
CP030007.1\|AWV76797.1\|3237711_3239004_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
CP030007.1\|AWV76801.1\|3244995_3245490_-\|leucine-responsive-regulatory-protein	unknown	unknown	gnl\|CDD\|183009
CP030007.1\|AWV76813.1\|3260944_3261928_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
CP030007.1\|AWV76810.1\|3255465_3256401_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|187867
CP030007.1\|AWV76799.1\|3240449_3241064_-\|outer-membrane-lipoprotein-carrier-protein-LolA	unknown	unknown	gnl\|CDD\|129638
CP030007.1\|AWV76808.1\|3253394_3253868_+\|RES-domain-containing-protein	unknown	unknown	gnl\|CDD\|227941
CP030007.1\|AWV76815.1\|3264500_3265202_+\|hypothetical-protein	unknown	unknown	unknown
CP030007.1\|AWV76811.1\|3256397_3257708_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|187866
CP030007.1\|AWV76816.1\|3265204_3265423_+\|hypothetical-protein	unknown	unknown	unknown
CP030007.1\|AWV76807.1\|3252954_3253398_+\|DUF2384-domain-containing-protein	unknown	unknown	gnl\|CDD\|131346
CP030007.1\|AWV76806.1\|3251638_3251857_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
CP030007.1\|AWV76809.1\|3254453_3255452_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
CP030007.1\|AWV76805.1\|3250649_3251354_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
CP030007.1\|AWV76804.1\|3248882_3250604_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
CP030007.1\|AWV76800.1\|3241191_3244860_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
CP030007.1\|AWV76802.1\|3246033_3247002_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
CP030007.1\|AWV76798.1\|3239096_3240440_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
CP030007.1\|AWV76812.1\|3257723_3260948_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
CP030007.1\|AWV76803.1\|3247116_3248883_+\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|236870

Protein	Function_ID	Function_description	E-value
CP030007.1\|AWV76797.1\|3237711_3239004_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
CP030007.1\|AWV76801.1\|3244995_3245490_-\|leucine-responsive-regulatory-protein	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	1.61477e-117
CP030007.1\|AWV76813.1\|3260944_3261928_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
CP030007.1\|AWV76810.1\|3255465_3256401_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187867	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	2.76788e-132
CP030007.1\|AWV76799.1\|3240449_3241064_-\|outer-membrane-lipoprotein-carrier-protein-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	7.77316e-117
CP030007.1\|AWV76808.1\|3253394_3253868_+\|RES-domain-containing-protein	gnl\|CDD\|227941	COG5654, COG5654, Uncharacterized conserved protein [Function unknown].	4.73888e-27
CP030007.1\|AWV76811.1\|3256397_3257708_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	2.70099e-166
CP030007.1\|AWV76807.1\|3252954_3253398_+\|DUF2384-domain-containing-protein	gnl\|CDD\|131346	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module. [Cellular processes, Other].	2.89096e-48
CP030007.1\|AWV76806.1\|3251638_3251857_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	2.9822e-48
CP030007.1\|AWV76809.1\|3254453_3255452_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
CP030007.1\|AWV76805.1\|3250649_3251354_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.86224e-137
CP030007.1\|AWV76804.1\|3248882_3250604_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP030007.1\|AWV76800.1\|3241191_3244860_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
CP030007.1\|AWV76802.1\|3246033_3247002_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
CP030007.1\|AWV76798.1\|3239096_3240440_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
CP030007.1\|AWV76812.1\|3257723_3260948_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
CP030007.1\|AWV76803.1\|3247116_3248883_+\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0

>CP030007.1|AWV76806.1|3251638_3251857_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLDTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>CP030007.1|AWV76805.1|3250649_3251354_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHNIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPGQFHLSRSMKRFHAKSPFRVTLNHAFGQVIEGCAEDRLEGTWITRDIIIAYHQLHELGYAHSIEVWSGDDLVGGMYGVAQGTLFCGESMFSRSTNASKTALLVFSQEFARRGGQLMDCQVLNEHTASLGAVEIPRRHYIEHLEQCRKETLPRDFWVPRTLFIPNA
>CP030007.1|AWV76804.1|3248882_3250604_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLTLGIVLAIVTLLASIGLLTLSGWFLSASAAAGFAGLYSFNYMLPAAGVRGTAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARFRQGELLNRVVADVDTLDHLYLRVISPMVGAFVVIVVVTLGLSFLDVPIALTLGGIMLMTLIILPPLFYRAGKTTGENLTRLRGEYRQQLTAWLQGQAELTLFGASKRYRARMENTELNWHEAQRRQSELTAFSQALMMLIGGIAVIAMLWMASGGVGGNAQPGPLIALFVFCALAAFEALAPVTGAFQHLGQVIASALRITDIAEQEPEVKFSAGQTAVPEQVALTLSNVTFVYDKQAQNALEDITLSVDAGQRIAILGRTGCGKSTLLQLLTRAWDPQQGEIRFNDVPLSGFSEAALRKTVSVVPQRVHLFSATLRDNLLLAAPDASDDTLRAMLEQVGLHKLLEDDGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLMLLDEPTEGLDATTESQILDLLANVMKGKTVLMVTHRLRGLVNFDQIIVMDNGHIIEQGSHAELLAKQGRYYQFKQRL
>CP030007.1|AWV76803.1|3247116_3248883_+|thiol-reductant-ABC-exporter-subunit-CydD
MEKTRQQELTRWLKQQSVLSRRWLMISRVLGFISGLLIVAQAWLLARILNHMIMENIPREALLLPFIVLVLVFVLRAWVVWLRERVGFHAGQHIRYEIRRKVLDRLSEAGPAWIQGKPAGSWATLILEQIDDMHDYYARYLPQMALAVFVPLMIVIAIFPVNWVAALILLGTAPLIPLFMAMVGMGAADANRRNFLALGRLSGHFLDRLRGMETLRIFGRGEAETENIRLASQDFRQRTMEVLRMAFLSSGVLEFFTSLSIALVAVYFGFSYLGALDFGHYGTAVTLSAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLANPERGEVTLNTNDPVTIEAQDFSVLSPEGKVLAGPLNFTLPAGQRVVLVGTSGSGKSSLLNALSGFMAYTGSLRINKTELRELDPDAWRKQLSWVGQNPQLPAPTLRENVLLARPDAREDELQSVLDRAWVSEFLPLLAQGVDTVIGDQSAGLSVGQAQRVAVARALLNPSSLMLLDEPAASLDAHSEQRVMDALNAASRQQTTLMVTHQLEGIADWDQIWVMENGHIVEQGDYAALVAAQGPFATLLANRQEDI
>CP030007.1|AWV76802.1|3246033_3247002_+|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHAAKFETEILFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLANIASEVHLIHRRDTFRAEKILIKRLMDKVASGNIVLHTNRTLEEVTGDQMGVAGLRIRDTQNTDNVETLEVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSVPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLAEQGK
>CP030007.1|AWV76801.1|3244995_3245490_-|leucine-responsive-regulatory-protein
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>CP030007.1|AWV76800.1|3241191_3244860_-|DNA-translocase-FtsK
MSQEYTEDKEVTLSKLSSGRRLLEALLIVIALFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGVPGAWLADTLFFIFGVMAYTLPVIIIGGCWFAWRHRQNDDYIDYFAVSLRLIGALALILTSCGLAAINADDIWYFASGGVIGSLLSSALQPMLHSSGGTLALLCIWAAGLTLFTGWSWVSIAEKIGSFILTLLTFASNRTRRDDTWVDEDEYEDEYEEEDEAPVQRRESRRARILRGALARRQRVAEKFANPLGRKTDAALFSGKRMDEEEQIEYRGAAVDPDDVLFSGHRATPGEYDEYDPLLHGHSVTEPVAAAAAATTAAQAHVAPVEAVMPSSPVPAPESAIQQPQVDWQTAPGVHTPEPTIAPEPESYIPVQQEQWQQPYQPPEPASEPQQPYQAYTPEPAEPEQPYVAPVSEPEVVEEAKPSRPPLYYFEEVEERRAREREQLAAWYQPVPEPVQEPVVKAPSASVAPVDPAPAVASGAETVKQATAAAAASAPLFSPATDGAPRPQVKEGIGPQLPRPNRVRVPTRRELASYGIKLPSQRMAEEKARESDYEDDADELHQDELARQFAAQQTQRYGNEYQHDVHSQQDEDDAAEAELARQFAATQQQRYSGEQPSGANPFSLSDFEFSPMKDLVDDGPSEPLFTPSVMPEAEPVRQAPAPQVNAQPQQPVPQAYAQPHTPPAQPPQPQFQQPAPQPQESLIHPLLMRNGDSRPLQRPSTPLPSLDLLTPPPAEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNTKFRDNPSPLTVVLGKDIAGDPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWSVNEMERRYKLMSALGVRNLAGYNEKIAEAARMGRPIPDPYWKPGDSMDAQHPVLEKLPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQGGAESLLGMGDMLYSGPNSTSPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGGGGFDGGEELDPLFDQAVNFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>CP030007.1|AWV76799.1|3240449_3241064_-|outer-membrane-lipoprotein-carrier-protein-LolA
MKKIAIVCALLSSFVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGNAVQEGQGDLWVKRPNLFNWHMTQPDESVLVSDGKTLWFYNPFVEQATATWLKDATSNTPFMLIARNQSSDWQQYNIKQNGDEFVLTPKGSNGNLKQFTINVSSNGTINQFGAVEQDDQRSSYQLKSQQNGAVDASKFTFTPPQGVTVDDQRNK
>CP030007.1|AWV76798.1|3239096_3240440_-|replication-associated-recombination-protein-A
MSNLSLDFSDNAFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTIFFIGATTENPSFELNSALLSRARVYLLKSLTTEDIEKVLTQAMEDKARGYGGQDIVLPDDTRRAIAELVNGDARRALNTLEMMADMAEVDDAGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAMSDARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEEYFPQEMAQTRYYHPTNRGLEGKIGEKLAWLAGQDQNSPIKRYR
>CP030007.1|AWV76797.1|3237711_3239004_-|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLRALEERRKVLQVQTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDQAKAELDVLQAEIRDIALAIPNIPDDSVPVGKDENDNVEVKRWGTPREFDFEVRDHVTLGEMHAGLDFAAAVKLTGSRFVVMKGQIAHLHRALAQFMLDLHTEQHGYSETYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLDEEADSSNYALIPTAEVPLTNLVRDEIIDEDDLPIKLTAHSPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEESMDALEEMTGHAEKVLELLGLPYRRMALCTGDMGFGACKTFDLEVWVPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVLENYQQADGRIEIPEVLRPYMKGQQFIG
>CP030007.1|AWV76807.1|3252954_3253398_+|DUF2384-domain-containing-protein
MRTWVPAQRPADNTLWRYAGLPASRGMRLIEYLNQGLPVSVLDNIHEWTDMSKAEILRVTGINERNVARRKSTGRTLTPDESERVARFVRVLDAAVDYFGSKEEAWNWLQLPVRGLGNVAPVDLIATETGALEVTDLIGRLEHGVFA
>CP030007.1|AWV76808.1|3253394_3253868_+|RES-domain-containing-protein
MIFYRLVTGRFASEAWSGSGANQYGGRWNHKGHPAVYVSTSISLASLEILVHVRKDTVLNQYQLFSINIPDDQIDYLDKAWLPEDWQENPAPVSTMDLGTGWLQANSALALILPSCIIPYENNAILNPLHPAFRKALNSVELLPFNFDTRLAEKTAP
>CP030007.1|AWV76809.1|3254453_3255452_-|type-I-F-CRISPR-associated-protein-Csy3
MAKAPTAVKTASVLAFERKLATTDAVMYSGSWQGETWQPIRIQEKAVRGTISNRLKNALTNDPAKLDAEIQKANLQRVDVAALPADADTLQVKFTLRVLGNLSTPSVCNDRAYQDALQQVIDGYISEHGFAELARRYATNLANGRFLWRNRVGAEKITVNVTGSKTWTFDAYCYALRDFSASDKNLEALAQEIEKGLSGEGFVLLNVEAQVLLGAGQEVFPSQELVLDSNSSKSRLLYQVDNVAGMHSQKIGNAIRTIDTWHPKVDELGAIAVEPYGSVTSRGVACRQPKEKMDFYTLLDNWVTKGQKPDVAQQHYVMAVLIRGGVFGEKGE
>CP030007.1|AWV76810.1|3255465_3256401_-|type-I-F-CRISPR-associated-protein-Csy2
MSSLILLHRIRVENANAIAGLTYGFPAITHFLGFSHALSRKLTETHGLKIDGCAVVSHEHQIHAHTSGRDYQFALTRNPLTRDAKTASFNEEGRMHMTVSLLLECHGEIPNGEYGQRDLAEHLSQVCPTLRLAGGIIVDIQAITVMAMPSDSRDLCRLQWQLMPGFALRDRSNWLGEHYQTLLESDPNTSLLDAWLDFAAMKFQAETPEEGDIREGEPANWHYVPKPNSGYLVPLMTGYQRISALYSPGMVSNARDAETPFAFTEAVYGVGEWCGLHRIQSLNEIFWRFHTTETGYYCQGAGAPVTSAHSK
>CP030007.1|AWV76811.1|3256397_3257708_-|type-I-F-CRISPR-associated-protein-Csy1
MSVEALSAFIAEYIAGRRQTKLEAFDKEAAKRSDADSATIAAERRELELRYEPKAWLTDAAKRAGQINLVTHAAKFTHGDSKSCSIYSEAVAQEGYLSTAALSGLEPDAVGNAAALDVAKLLQTRVDGGDSLLASLKRGDHAALAAFADGENQLREWIAGFSRALTPGEPASHKLAKQGYFPVGEGYHLLSPLFATSLVHAMHQKMIAFRFGDEVKAIWKARREKTWHPTPLTLFPDAAEIHFGGTKPQNISYLNSVRGGRCWLLSCQPPQGKRAEKAPTNLRSVFASGGQFDRRARSQIQLLVSLLTKTGSYTSFRIREARDGYINMLIDLLFEIASELQREAWQNWTLNCPNLKPHQQLWLDPWRTKTDEAFRLEREKGDWQGAVAEDFALWLNARLRKAMPDLGAVEKREWETRERLRSNLREMEKIIQEALK
>CP030007.1|AWV76812.1|3257723_3260948_-|type-I-F-CRISPR-associated-helicase-Cas3
MNVLIISRCTKRAREQSCQIIDQFAERTGDAAWQTTITMEGAITLRKLLRKTARRNTAVACHWLKKNGQTELLWIVGNLRRFNAQGRVPTNRTTLQIIRNDSEHRWQSAESIALLAAIAGLFHDFGKAGMCFQQTLLKESKHRFQPYRHEWISVRLFQAFVGQQTDAQWLASLEHLKATDEKAMLKALTMDTPEKSGSPLGHLPPLARVVAWLMLSHHRLPQSHSAEPQLLYCDGWLERQLNADWNSLNHKSTEKHQWKERDLKNVWKFPHGTPLRSKTWREKARQIGKRIRNTPALLDFGSLDNLFTLHLARLSLMLADHFYSSQPAYSGWQDDAVQIWANSNPEPNQKLDEHNVGVAHHALLMGRSLPTLRRALPAIARHKAFRERAKDPRFFWQNKAWDVASSLRDKSAEQGFFGINMASTGCGKTFANARIMYALADEQEGCRFSVALGLRTLTLQTGHALQSRLGLDDDTLAVVTGAAAVKELYQGNDTEDNNSASDEAFFASHHYVHYEGATSGGTAQQWLSKEPALNRLVSAPVLVTTIDHLMPATEGVRGGRQIPAMLRLLTSDLVLDEPDDFDIDDLHALCRLVNWAGMLGSRVLLSSATLPPALTEALFEAYREGRKAWQAACGQSDRPMNICCAWFDEYCAQSQDVADDAHFHRAHGDFVRQRIKRLPDQPRLRLGKLAAVEPQSSSKTDVVSALAQTLRQQMIALHGLHHSTHNAGKTVSFGLVRMANINPLVAVAQTLMALPSPDNYSIHYCVYHSQHPLAVRAAIEKRLDCAFTRHAPERIWQLPEVKQALASQEQHHLFVVLGTSVLEVGRDFDADWGIIEPSSMRSLIQFAGRIQRHRQIAPESENLVILDRNVRALHGEKVAYCRPGFETGQHLLLHHDLHALIDEEGYRTLNAIPRIAEDVPGNALAALEHTRLRAALLEGGDKSDAVAALWWRLPLTWNGELQKRTPFRRASAQASFFLSMEEEGDEPEFCLMQEDGVLKPAGRFCIQPLFMADGVEPWIAIDYAEVLQALADEKQMELAVVSRRYGEITLRDERKEKAEEWLYHQVLGVFREYL
>CP030007.1|AWV76813.1|3260944_3261928_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MPANSITPSDLKTILHSKRANIYYLEKCRIQVNGGRVEYVTQEGKESFYWNIPIANTTAVMLGMGTSVTQMAMREFARAGVMVGFCGTDGTPLYSANEVDIDVSWLCPQSEYRPTEYLQNWVSFWFNEEKRLQAAKHFQFIRLQQIEKQWSGLRMQREMAFQPDKDALNTLLERARQGMEKAQDHTSLMLQEAQLTKSLYKLTSQTTGYGNFTRAKRGGGADMANRFLDQGNYLAYGLAAVAAWVTGIPHGLAVMHGKTRRGGLVFDIADLIKDALVMPQAFIAAMEGEDNQQFRQRCINAFQQADALDVMITTLQETSQSLAGSTK
>CP030007.1|AWV76814.1|3263238_3263682_-|hypothetical-protein
MNMENQSISQLYSELSLNPDFPALVERCNLLTEILLDCHSLPQTQPVCRCLGAYLDVVKTELAESMSDFRVVEFDDEAERPKGNEWLLEDTEIKCDYCRALNHVLLVSHFDREMLPHLTGLLHDITHSMAADVVAPECGKPVIHIIN
>CP030007.1|AWV76815.1|3264500_3265202_+|hypothetical-protein
MYYSEDIINKIGTDKELAIRLDKAMSGVKEEVIDYLNNLGDAATRLLYYSSCLTKNYHDVCTRLKDEDVRFVQGLGELVIHRNLIFRMIKIYIETVLKSKNEVEKKSILERLTLFTKNISIKTFSKSALIYSIVSYICYGNKMNASVEAAFVKKIGARAGIPITALNLYSIVNKASESANRLKIFMPQFYHALYVEKLEMMYFLIEPIIMKAGYLNINTASNIEITNALKRMM
>CP030007.1|AWV76816.1|3265204_3265423_+|hypothetical-protein
MLKPIMKFLKKFFNSVIQDCFNDIYWYGVFIFSAFLSGIVAANIDDIKIAHNIILGIFIIVFVIAFRFRDKG

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Crispr_ID: CP030007_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030007_2

3262192-3263061

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGCACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGCACGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGCACGGCAGTGAAC	PILER-CR

14 spacers

cas1,cas3f,cas8f,cas5f,cas7f

The CRISPR arrays of CP030007_2

>merge|CP030007|2|3262192-3263061|CRISPRCasFinder,CRT,PILER-CR
GGAGTATGCTGCCTGTACGGTGGTGAACAACATGGTGATAAGCAGGGCCAATGCGGTTGCTTTCTAAGCTGCCTGCACGGCAGTGAACGGTTATCTGTTTACCTTGACTGGGAAAATAGATTTCTAAGCTGCCTGCACGGCAGTGAACTGAGCTCTTCAGTCGTCTGGGGGATCGTTATCTTTCTAAGCTGCCTGCACGGCAGTGAACAATGGGCTGAGTCAATCATCAGCAAGGCTATGTTTCTAAGCTGCCTGCACGGCAGTGAACAAGGGATATCACGTTAGTTACTCCGCGGCATGTTTCTAAGCTGCCTGCACGGCAGTGAACATGCGGGTGCTCGGAATCCCGCCACCCCGCAATTTCTAAGCTGCCTGCACGGCAGTGAACATCATCGTTATGGACGGCCAGCGCTTTGGCGAATTTCTAAGCTGCCTGCACGGCAGTGAACAAGCCCTCAGAAGCGCCTGATGATGCTGACGATTTCTAAGCTGCCTGCACGGCAGTGAACAAGTCACTGAACCGGTACCGACAATTACCGCATTTCTAAGCTGCCTGCACGGCAGTGAACGCTCCATCTGGAAGTTTCTTTGTGCGATCAATGTTTCTAAGCTGCCTGCACGGCAGTGAACAACGCTACAGGCCGTTGATCATTAAACAGTGCTTTCTAAGCTGCCTGCACGGCAGTGAACGAAAAGGGAAATAATCACCGCCCGCGGTATAGTTTCTAAGCTGCCTGCACGGCAGTGAAATTTGACGTACTAGGCCCAATGCGTATAATGGATTTCTAAGCTGCCTGCACGGCAGTGAACCATCGTCATAGTGGCGGTGTTATCTTGCATCATTTCTAAGCTGCCTGCACGGCAGTGAAC

>CP030007|2|2|3262192-3263061|CRISPRCasFinder
GGAGTATGCTGCCTGTACGGTGGTGAAC	AACATGGTGATAAGCAGGGCCAATGCGGTTGC
TTTCTAAGCTGCCTGCACGGCAGTGAAC	GGTTATCTGTTTACCTTGACTGGGAAAATAGA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	TGAGCTCTTCAGTCGTCTGGGGGATCGTTATC
TTTCTAAGCTGCCTGCACGGCAGTGAAC	AATGGGCTGAGTCAATCATCAGCAAGGCTATG
TTTCTAAGCTGCCTGCACGGCAGTGAAC	AAGGGATATCACGTTAGTTACTCCGCGGCATG
TTTCTAAGCTGCCTGCACGGCAGTGAAC	ATGCGGGTGCTCGGAATCCCGCCACCCCGCAA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	ATCATCGTTATGGACGGCCAGCGCTTTGGCGAA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	AAGCCCTCAGAAGCGCCTGATGATGCTGACGA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	AAGTCACTGAACCGGTACCGACAATTACCGCA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	GCTCCATCTGGAAGTTTCTTTGTGCGATCAATG
TTTCTAAGCTGCCTGCACGGCAGTGAAC	AACGCTACAGGCCGTTGATCATTAAACAGTGC
TTTCTAAGCTGCCTGCACGGCAGTGAAC	GAAAAGGGAAATAATCACCGCCCGCGGTATAG
TTTCTAAGCTGCCTGCACGGCAGTGAAA	TTTGACGTACTAGGCCCAATGCGTATAATGGA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	CATCGTCATAGTGGCGGTGTTATCTTGCATCA
TTTCTAAGCTGCCTGCACGGCAGTGAAC

>CP030007|2|2|3262192-3263061|CRT
GGAGTATGCTGCCTGTACGGTGGTGAAC	AACATGGTGATAAGCAGGGCCAATGCGGTTGC
TTTCTAAGCTGCCTGCACGGCAGTGAAC	GGTTATCTGTTTACCTTGACTGGGAAAATAGA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	TGAGCTCTTCAGTCGTCTGGGGGATCGTTATC
TTTCTAAGCTGCCTGCACGGCAGTGAAC	AATGGGCTGAGTCAATCATCAGCAAGGCTATG
TTTCTAAGCTGCCTGCACGGCAGTGAAC	AAGGGATATCACGTTAGTTACTCCGCGGCATG
TTTCTAAGCTGCCTGCACGGCAGTGAAC	ATGCGGGTGCTCGGAATCCCGCCACCCCGCAA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	ATCATCGTTATGGACGGCCAGCGCTTTGGCGAA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	AAGCCCTCAGAAGCGCCTGATGATGCTGACGA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	AAGTCACTGAACCGGTACCGACAATTACCGCA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	GCTCCATCTGGAAGTTTCTTTGTGCGATCAATG
TTTCTAAGCTGCCTGCACGGCAGTGAAC	AACGCTACAGGCCGTTGATCATTAAACAGTGC
TTTCTAAGCTGCCTGCACGGCAGTGAAC	GAAAAGGGAAATAATCACCGCCCGCGGTATAG
TTTCTAAGCTGCCTGCACGGCAGTGAAA	TTTGACGTACTAGGCCCAATGCGTATAATGGA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	CATCGTCATAGTGGCGGTGTTATCTTGCATCA
TTTCTAAGCTGCCTGCACGGCAGTGAAC

>CP030007|2|2|3262252-3263061|PILER-CR
TTTCTAAGCTGCCTGCACGGCAGTGAAC	GGTTATCTGTTTACCTTGACTGGGAAAATAGA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	TGAGCTCTTCAGTCGTCTGGGGGATCGTTATC
TTTCTAAGCTGCCTGCACGGCAGTGAAC	AATGGGCTGAGTCAATCATCAGCAAGGCTATG
TTTCTAAGCTGCCTGCACGGCAGTGAAC	AAGGGATATCACGTTAGTTACTCCGCGGCATG
TTTCTAAGCTGCCTGCACGGCAGTGAAC	ATGCGGGTGCTCGGAATCCCGCCACCCCGCAA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	ATCATCGTTATGGACGGCCAGCGCTTTGGCGAA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	AAGCCCTCAGAAGCGCCTGATGATGCTGACGA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	AAGTCACTGAACCGGTACCGACAATTACCGCA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	GCTCCATCTGGAAGTTTCTTTGTGCGATCAATG
TTTCTAAGCTGCCTGCACGGCAGTGAAC	AACGCTACAGGCCGTTGATCATTAAACAGTGC
TTTCTAAGCTGCCTGCACGGCAGTGAAC	GAAAAGGGAAATAATCACCGCCCGCGGTATAG
TTTCTAAGCTGCCTGCACGGCAGTGAAA	TTTGACGTACTAGGCCCAATGCGTATAATGGA
TTTCTAAGCTGCCTGCACGGCAGTGAAC	CATCGTCATAGTGGCGGTGTTATCTTGCATCA
TTTCTAAGCTGCCTGCACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP030007.1\|AWV76814.1\|3263238_3263682_-\|hypothetical-protein	unknown	unknown	unknown
CP030007.1\|AWV76810.1\|3255465_3256401_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|187867
CP030007.1\|AWV76820.1\|3268906_3269128_+\|cold-shock-domain-protein-CspD	unknown	unknown	gnl\|CDD\|184960
CP030007.1\|AWV76822.1\|3271135_3272251_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
CP030007.1\|AWV76811.1\|3256397_3257708_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|187866
CP030007.1\|AWV76808.1\|3253394_3253868_+\|RES-domain-containing-protein	unknown	unknown	gnl\|CDD\|227941
CP030007.1\|AWV76815.1\|3264500_3265202_+\|hypothetical-protein	unknown	unknown	unknown
CP030007.1\|AWV76823.1\|3272410_3273367_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|377343
CP030007.1\|AWV76816.1\|3265204_3265423_+\|hypothetical-protein	unknown	unknown	unknown
CP030007.1\|AWV76805.1\|3250649_3251354_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
CP030007.1\|AWV76813.1\|3260944_3261928_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
CP030007.1\|AWV76809.1\|3254453_3255452_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
CP030007.1\|AWV76821.1\|3269198_3271139_-\|MacB-family-efflux-pump-subunit	unknown	unknown	gnl\|CDD\|182528
CP030007.1\|AWV76807.1\|3252954_3253398_+\|DUF2384-domain-containing-protein	unknown	unknown	gnl\|CDD\|131346
CP030007.1\|AWV76817.1\|3265426_3265906_+\|type-VI-secretion-system-tube-protein-Hcp	unknown	unknown	gnl\|CDD\|213799
CP030007.1\|AWV76804.1\|3248882_3250604_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
CP030007.1\|AWV76818.1\|3266011_3268291_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
CP030007.1\|AWV76806.1\|3251638_3251857_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
CP030007.1\|AWV76812.1\|3257723_3260948_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
CP030007.1\|AWV76819.1\|3268318_3268639_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809

Protein	Function_ID	Function_description	E-value
CP030007.1\|AWV76810.1\|3255465_3256401_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187867	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	2.76788e-132
CP030007.1\|AWV76820.1\|3268906_3269128_+\|cold-shock-domain-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	9.14248e-48
CP030007.1\|AWV76822.1\|3271135_3272251_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
CP030007.1\|AWV76811.1\|3256397_3257708_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	2.70099e-166
CP030007.1\|AWV76808.1\|3253394_3253868_+\|RES-domain-containing-protein	gnl\|CDD\|227941	COG5654, COG5654, Uncharacterized conserved protein [Function unknown].	4.73888e-27
CP030007.1\|AWV76817.1\|3265426_3265906_+\|type-VI-secretion-system-tube-protein-Hcp	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	1.84805e-41
CP030007.1\|AWV76805.1\|3250649_3251354_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.86224e-137
CP030007.1\|AWV76813.1\|3260944_3261928_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
CP030007.1\|AWV76809.1\|3254453_3255452_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
CP030007.1\|AWV76823.1\|3272410_3273367_+\|DUF535-domain-containing-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	3.82706e-128
CP030007.1\|AWV76807.1\|3252954_3253398_+\|DUF2384-domain-containing-protein	gnl\|CDD\|131346	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module. [Cellular processes, Other].	2.89096e-48
CP030007.1\|AWV76818.1\|3266011_3268291_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
CP030007.1\|AWV76804.1\|3248882_3250604_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP030007.1\|AWV76821.1\|3269198_3271139_-\|MacB-family-efflux-pump-subunit	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
CP030007.1\|AWV76806.1\|3251638_3251857_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	2.9822e-48
CP030007.1\|AWV76812.1\|3257723_3260948_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
CP030007.1\|AWV76819.1\|3268318_3268639_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	9.90991e-48

>CP030007.1|AWV76813.1|3260944_3261928_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MPANSITPSDLKTILHSKRANIYYLEKCRIQVNGGRVEYVTQEGKESFYWNIPIANTTAVMLGMGTSVTQMAMREFARAGVMVGFCGTDGTPLYSANEVDIDVSWLCPQSEYRPTEYLQNWVSFWFNEEKRLQAAKHFQFIRLQQIEKQWSGLRMQREMAFQPDKDALNTLLERARQGMEKAQDHTSLMLQEAQLTKSLYKLTSQTTGYGNFTRAKRGGGADMANRFLDQGNYLAYGLAAVAAWVTGIPHGLAVMHGKTRRGGLVFDIADLIKDALVMPQAFIAAMEGEDNQQFRQRCINAFQQADALDVMITTLQETSQSLAGSTK
>CP030007.1|AWV76812.1|3257723_3260948_-|type-I-F-CRISPR-associated-helicase-Cas3
MNVLIISRCTKRAREQSCQIIDQFAERTGDAAWQTTITMEGAITLRKLLRKTARRNTAVACHWLKKNGQTELLWIVGNLRRFNAQGRVPTNRTTLQIIRNDSEHRWQSAESIALLAAIAGLFHDFGKAGMCFQQTLLKESKHRFQPYRHEWISVRLFQAFVGQQTDAQWLASLEHLKATDEKAMLKALTMDTPEKSGSPLGHLPPLARVVAWLMLSHHRLPQSHSAEPQLLYCDGWLERQLNADWNSLNHKSTEKHQWKERDLKNVWKFPHGTPLRSKTWREKARQIGKRIRNTPALLDFGSLDNLFTLHLARLSLMLADHFYSSQPAYSGWQDDAVQIWANSNPEPNQKLDEHNVGVAHHALLMGRSLPTLRRALPAIARHKAFRERAKDPRFFWQNKAWDVASSLRDKSAEQGFFGINMASTGCGKTFANARIMYALADEQEGCRFSVALGLRTLTLQTGHALQSRLGLDDDTLAVVTGAAAVKELYQGNDTEDNNSASDEAFFASHHYVHYEGATSGGTAQQWLSKEPALNRLVSAPVLVTTIDHLMPATEGVRGGRQIPAMLRLLTSDLVLDEPDDFDIDDLHALCRLVNWAGMLGSRVLLSSATLPPALTEALFEAYREGRKAWQAACGQSDRPMNICCAWFDEYCAQSQDVADDAHFHRAHGDFVRQRIKRLPDQPRLRLGKLAAVEPQSSSKTDVVSALAQTLRQQMIALHGLHHSTHNAGKTVSFGLVRMANINPLVAVAQTLMALPSPDNYSIHYCVYHSQHPLAVRAAIEKRLDCAFTRHAPERIWQLPEVKQALASQEQHHLFVVLGTSVLEVGRDFDADWGIIEPSSMRSLIQFAGRIQRHRQIAPESENLVILDRNVRALHGEKVAYCRPGFETGQHLLLHHDLHALIDEEGYRTLNAIPRIAEDVPGNALAALEHTRLRAALLEGGDKSDAVAALWWRLPLTWNGELQKRTPFRRASAQASFFLSMEEEGDEPEFCLMQEDGVLKPAGRFCIQPLFMADGVEPWIAIDYAEVLQALADEKQMELAVVSRRYGEITLRDERKEKAEEWLYHQVLGVFREYL
>CP030007.1|AWV76811.1|3256397_3257708_-|type-I-F-CRISPR-associated-protein-Csy1
MSVEALSAFIAEYIAGRRQTKLEAFDKEAAKRSDADSATIAAERRELELRYEPKAWLTDAAKRAGQINLVTHAAKFTHGDSKSCSIYSEAVAQEGYLSTAALSGLEPDAVGNAAALDVAKLLQTRVDGGDSLLASLKRGDHAALAAFADGENQLREWIAGFSRALTPGEPASHKLAKQGYFPVGEGYHLLSPLFATSLVHAMHQKMIAFRFGDEVKAIWKARREKTWHPTPLTLFPDAAEIHFGGTKPQNISYLNSVRGGRCWLLSCQPPQGKRAEKAPTNLRSVFASGGQFDRRARSQIQLLVSLLTKTGSYTSFRIREARDGYINMLIDLLFEIASELQREAWQNWTLNCPNLKPHQQLWLDPWRTKTDEAFRLEREKGDWQGAVAEDFALWLNARLRKAMPDLGAVEKREWETRERLRSNLREMEKIIQEALK
>CP030007.1|AWV76810.1|3255465_3256401_-|type-I-F-CRISPR-associated-protein-Csy2
MSSLILLHRIRVENANAIAGLTYGFPAITHFLGFSHALSRKLTETHGLKIDGCAVVSHEHQIHAHTSGRDYQFALTRNPLTRDAKTASFNEEGRMHMTVSLLLECHGEIPNGEYGQRDLAEHLSQVCPTLRLAGGIIVDIQAITVMAMPSDSRDLCRLQWQLMPGFALRDRSNWLGEHYQTLLESDPNTSLLDAWLDFAAMKFQAETPEEGDIREGEPANWHYVPKPNSGYLVPLMTGYQRISALYSPGMVSNARDAETPFAFTEAVYGVGEWCGLHRIQSLNEIFWRFHTTETGYYCQGAGAPVTSAHSK
>CP030007.1|AWV76809.1|3254453_3255452_-|type-I-F-CRISPR-associated-protein-Csy3
MAKAPTAVKTASVLAFERKLATTDAVMYSGSWQGETWQPIRIQEKAVRGTISNRLKNALTNDPAKLDAEIQKANLQRVDVAALPADADTLQVKFTLRVLGNLSTPSVCNDRAYQDALQQVIDGYISEHGFAELARRYATNLANGRFLWRNRVGAEKITVNVTGSKTWTFDAYCYALRDFSASDKNLEALAQEIEKGLSGEGFVLLNVEAQVLLGAGQEVFPSQELVLDSNSSKSRLLYQVDNVAGMHSQKIGNAIRTIDTWHPKVDELGAIAVEPYGSVTSRGVACRQPKEKMDFYTLLDNWVTKGQKPDVAQQHYVMAVLIRGGVFGEKGE
>CP030007.1|AWV76808.1|3253394_3253868_+|RES-domain-containing-protein
MIFYRLVTGRFASEAWSGSGANQYGGRWNHKGHPAVYVSTSISLASLEILVHVRKDTVLNQYQLFSINIPDDQIDYLDKAWLPEDWQENPAPVSTMDLGTGWLQANSALALILPSCIIPYENNAILNPLHPAFRKALNSVELLPFNFDTRLAEKTAP
>CP030007.1|AWV76807.1|3252954_3253398_+|DUF2384-domain-containing-protein
MRTWVPAQRPADNTLWRYAGLPASRGMRLIEYLNQGLPVSVLDNIHEWTDMSKAEILRVTGINERNVARRKSTGRTLTPDESERVARFVRVLDAAVDYFGSKEEAWNWLQLPVRGLGNVAPVDLIATETGALEVTDLIGRLEHGVFA
>CP030007.1|AWV76806.1|3251638_3251857_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLDTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>CP030007.1|AWV76805.1|3250649_3251354_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHNIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPGQFHLSRSMKRFHAKSPFRVTLNHAFGQVIEGCAEDRLEGTWITRDIIIAYHQLHELGYAHSIEVWSGDDLVGGMYGVAQGTLFCGESMFSRSTNASKTALLVFSQEFARRGGQLMDCQVLNEHTASLGAVEIPRRHYIEHLEQCRKETLPRDFWVPRTLFIPNA
>CP030007.1|AWV76804.1|3248882_3250604_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLTLGIVLAIVTLLASIGLLTLSGWFLSASAAAGFAGLYSFNYMLPAAGVRGTAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARFRQGELLNRVVADVDTLDHLYLRVISPMVGAFVVIVVVTLGLSFLDVPIALTLGGIMLMTLIILPPLFYRAGKTTGENLTRLRGEYRQQLTAWLQGQAELTLFGASKRYRARMENTELNWHEAQRRQSELTAFSQALMMLIGGIAVIAMLWMASGGVGGNAQPGPLIALFVFCALAAFEALAPVTGAFQHLGQVIASALRITDIAEQEPEVKFSAGQTAVPEQVALTLSNVTFVYDKQAQNALEDITLSVDAGQRIAILGRTGCGKSTLLQLLTRAWDPQQGEIRFNDVPLSGFSEAALRKTVSVVPQRVHLFSATLRDNLLLAAPDASDDTLRAMLEQVGLHKLLEDDGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLMLLDEPTEGLDATTESQILDLLANVMKGKTVLMVTHRLRGLVNFDQIIVMDNGHIIEQGSHAELLAKQGRYYQFKQRL
>CP030007.1|AWV76814.1|3263238_3263682_-|hypothetical-protein
MNMENQSISQLYSELSLNPDFPALVERCNLLTEILLDCHSLPQTQPVCRCLGAYLDVVKTELAESMSDFRVVEFDDEAERPKGNEWLLEDTEIKCDYCRALNHVLLVSHFDREMLPHLTGLLHDITHSMAADVVAPECGKPVIHIIN
>CP030007.1|AWV76815.1|3264500_3265202_+|hypothetical-protein
MYYSEDIINKIGTDKELAIRLDKAMSGVKEEVIDYLNNLGDAATRLLYYSSCLTKNYHDVCTRLKDEDVRFVQGLGELVIHRNLIFRMIKIYIETVLKSKNEVEKKSILERLTLFTKNISIKTFSKSALIYSIVSYICYGNKMNASVEAAFVKKIGARAGIPITALNLYSIVNKASESANRLKIFMPQFYHALYVEKLEMMYFLIEPIIMKAGYLNINTASNIEITNALKRMM
>CP030007.1|AWV76816.1|3265204_3265423_+|hypothetical-protein
MLKPIMKFLKKFFNSVIQDCFNDIYWYGVFIFSAFLSGIVAANIDDIKIAHNIILGIFIIVFVIAFRFRDKG
>CP030007.1|AWV76817.1|3265426_3265906_+|type-VI-secretion-system-tube-protein-Hcp
MTIPAHMWLTDENNSPITGECLMPTRLGSTELKSFNHSVWIPTDYNTGKLTGTRLHVPITFEKEIDRLTPYLFRAVCQGRTFGKALIKMYRINEAGIEVEYFNIKLENVKITRISPILFPIGVASKHMEEIEIRYESIEWIYCDGNIMFKDSWNERAVA
>CP030007.1|AWV76818.1|3266011_3268291_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPNQASDPSGQINSNEEQAGGEDRMENFTTNLNQLARVGGIDPLIGRDKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVIADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVMGSTTYQEFSNIFEKDRALARRFQKIDVTEPSVDETVQIINGLKTKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPASKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLRTLGNRLKMLVFGQDKAIEALTEAIKMARAGLGHDHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTEVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVGLDQAKNELTYDFQSAAKHKPEAAH
>CP030007.1|AWV76819.1|3268318_3268639_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEDKVRDALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYRGKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEKA
>CP030007.1|AWV76820.1|3268906_3269128_+|cold-shock-domain-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPVEAETVA
>CP030007.1|AWV76821.1|3269198_3271139_-|MacB-family-efflux-pump-subunit
MTALLELNDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALAKLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKALLTRLGLEERVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLLDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRQSRAAAPKEALPASTGWGQFSSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTRVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTISGRIMGQSWLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>CP030007.1|AWV76822.1|3271135_3272251_-|macrolide-transporter-subunit-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWKVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLTRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGETREREVVIGARNDTDVVVVKGLEEGEEVVTSETLPGAAQ
>CP030007.1|AWV76823.1|3272410_3273367_+|DUF535-domain-containing-protein
MSSIVDTPYSTLPQPKSGWQLFKSLASGSLTPGLAWQNPAYRRKFMLRSLATPFTTARLLGNLAKQPRLMQILRVQPGLPCRLHRPWLTVNMGRQTTLDALNDHYEMMSRHLPASLLNGYLSSQGITLVTLTGKEEQQFSVRLSADAFLDKEGEATLTFCDHQNTVLAELTFTLCTYQGKPTLFIGGMQGAKAHVPHEHIQLATKACHGLFPKRLLVEAVMTLAGAFPVEQILAVSNATHIYRSWRYRKKKEGKLLADYDSFWRSLGGQQQDNGNFALPLTMPRKPMEEIASKKRSEYRRRYALLDSLIQQVSQATAR

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Crispr_ID: CP030007_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030007_3

3280165-3280552

Unclear

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	PILER-CR

6 spacers

The CRISPR arrays of CP030007_3

>merge|CP030007|3|3280165-3280552|CRISPRCasFinder,CRT,PILER-CR
TGTGCCTACGGCCTGTACGGCAGTGAACCGTGACTAAAGTCATGAGCAAATCAGGCAAGATTTCTAAGCTGCCTGCCCGGCAGTGAACAAAACACGCTGGCGCGTGTCGGTGTCGCCGTATTTCTAAGCTGCCTGCCCGGCAGTGAACGAGGGAGAAAGCCAGGAAGTCTGGCAGTTAGATTTCTAAGCTGCCTGCCCGGCAGTGAACGTTAATGGTCTGGCAGGATTCAAGAACACGCTTTTCTAAGCTGCCTGCCCGGCAGTGAACTCTGTCTTTGGCTGAGTGCTTTGGTAGCGGGTTTTCTAAGCTGCCTGCCCGGCAGTGAACCCATCTCCCTTATCCTTTGGTGGCTTCTGTAATTTCTAAGCTGCCTGCCCGGCAGTGAAC

>CP030007|3|3|3280165-3280552|CRISPRCasFinder
TGTGCCTACGGCCTGTACGGCAGTGAAC	CGTGACTAAAGTCATGAGCAAATCAGGCAAGA
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	AAAACACGCTGGCGCGTGTCGGTGTCGCCGTA
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	GAGGGAGAAAGCCAGGAAGTCTGGCAGTTAGA
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	GTTAATGGTCTGGCAGGATTCAAGAACACGCT
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	TCTGTCTTTGGCTGAGTGCTTTGGTAGCGGGT
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	CCATCTCCCTTATCCTTTGGTGGCTTCTGTAA
TTTCTAAGCTGCCTGCCCGGCAGTGAAC

>CP030007|3|3|3280165-3280552|CRT
TGTGCCTACGGCCTGTACGGCAGTGAAC	CGTGACTAAAGTCATGAGCAAATCAGGCAAGA
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	AAAACACGCTGGCGCGTGTCGGTGTCGCCGTA
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	GAGGGAGAAAGCCAGGAAGTCTGGCAGTTAGA
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	GTTAATGGTCTGGCAGGATTCAAGAACACGCT
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	TCTGTCTTTGGCTGAGTGCTTTGGTAGCGGGT
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	CCATCTCCCTTATCCTTTGGTGGCTTCTGTAA
TTTCTAAGCTGCCTGCCCGGCAGTGAAC

>CP030007|3|3|3280225-3280552|PILER-CR
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	AAAACACGCTGGCGCGTGTCGGTGTCGCCGTA
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	GAGGGAGAAAGCCAGGAAGTCTGGCAGTTAGA
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	GTTAATGGTCTGGCAGGATTCAAGAACACGCT
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	TCTGTCTTTGGCTGAGTGCTTTGGTAGCGGGT
TTTCTAAGCTGCCTGCCCGGCAGTGAAC	CCATCTCCCTTATCCTTTGGTGGCTTCTGTAA
TTTCTAAGCTGCCTGCCCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP030007.1\|AWV76820.1\|3268906_3269128_+\|cold-shock-domain-protein-CspD	unknown	unknown	gnl\|CDD\|184960
CP030007.1\|AWV76830.1\|3282588_3283590_+\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
CP030007.1\|AWV76838.1\|3294159_3295170_-\|general-secretion-pathway-protein-GspK	unknown	unknown	gnl\|CDD\|377165
CP030007.1\|AWV76822.1\|3271135_3272251_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
CP030007.1\|AWV76836.1\|3292528_3293014_-\|type-II-secretion-system-protein-M	unknown	unknown	gnl\|CDD\|377391
CP030007.1\|AWV76835.1\|3291734_3292532_-\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
CP030007.1\|AWV76824.1\|3273363_3275022_-\|DUF2813-domain-containing-protein	unknown	unknown	gnl\|CDD\|226121
CP030007.1\|AWV76826.1\|3277229_3278882_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
CP030007.1\|AWV76823.1\|3272410_3273367_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|377343
CP030007.1\|AWV78447.1\|3275313_3276009_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
CP030007.1\|AWV76825.1\|3276185_3277085_+\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
CP030007.1\|AWV76828.1\|3279872_3280079_-\|hypothetical-protein	unknown	unknown	unknown
CP030007.1\|AWV76831.1\|3283600_3285037_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187556
CP030007.1\|AWV76821.1\|3269198_3271139_-\|MacB-family-efflux-pump-subunit	unknown	unknown	gnl\|CDD\|182528
CP030007.1\|AWV76834.1\|3288235_3288676_-\|type-III-secretion-system-invasion-protein-IagB	unknown	unknown	gnl\|CDD\|185228
CP030007.1\|AWV76832.1\|3285129_3286143_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
CP030007.1\|AWV76829.1\|3280831_3282550_+\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
CP030007.1\|AWV76827.1\|3278892_3279861_+\|NADH-oxidoreductase	unknown	unknown	gnl\|CDD\|236735
CP030007.1\|AWV76837.1\|3293010_3294144_-\|type-II-secretion-system-protein-GspL	unknown	unknown	gnl\|CDD\|273768
CP030007.1\|AWV76833.1\|3286289_3288101_-\|chitinase	unknown	unknown	gnl\|CDD\|381595

Protein	Function_ID	Function_description	E-value
CP030007.1\|AWV76821.1\|3269198_3271139_-\|MacB-family-efflux-pump-subunit	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
CP030007.1\|AWV76830.1\|3282588_3283590_+\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	0
CP030007.1\|AWV76838.1\|3294159_3295170_-\|general-secretion-pathway-protein-GspK	gnl\|CDD\|377165	pfam03934, T2SSK, Type II secretion system (T2SS), protein K. Members of this family are involved in the Type II protein secretion system. The T2SK family includes proteins such as ExeK, PulK, OutX and XcpX.	2.92104e-59
CP030007.1\|AWV76822.1\|3271135_3272251_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
CP030007.1\|AWV76836.1\|3292528_3293014_-\|type-II-secretion-system-protein-M	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	2.13746e-29
CP030007.1\|AWV76824.1\|3273363_3275022_-\|DUF2813-domain-containing-protein	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
CP030007.1\|AWV76820.1\|3268906_3269128_+\|cold-shock-domain-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	9.14248e-48
CP030007.1\|AWV76823.1\|3272410_3273367_+\|DUF535-domain-containing-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	3.82706e-128
CP030007.1\|AWV76827.1\|3278892_3279861_+\|NADH-oxidoreductase	gnl\|CDD\|236735	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional.	0
CP030007.1\|AWV76832.1\|3285129_3286143_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.05058e-52
CP030007.1\|AWV76825.1\|3276185_3277085_+\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	2.69399e-117
CP030007.1\|AWV76831.1\|3283600_3285037_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.29487e-142
CP030007.1\|AWV78447.1\|3275313_3276009_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	1.82782e-146
CP030007.1\|AWV76826.1\|3277229_3278882_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
CP030007.1\|AWV76834.1\|3288235_3288676_-\|type-III-secretion-system-invasion-protein-IagB	gnl\|CDD\|185228	PRK15328, PRK15328, type III secretion system invasion protein IagB.	5.32861e-87
CP030007.1\|AWV76829.1\|3280831_3282550_+\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
CP030007.1\|AWV76835.1\|3291734_3292532_-\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	1.87481e-40
CP030007.1\|AWV76837.1\|3293010_3294144_-\|type-II-secretion-system-protein-GspL	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	1.2395e-39
CP030007.1\|AWV76833.1\|3286289_3288101_-\|chitinase	gnl\|CDD\|381595	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.	8.00741e-70

>CP030007.1|AWV76828.1|3279872_3280079_-|hypothetical-protein
MRWPAWAKSPVALTLTGPTGVTKAYALACMGKKPGGADAYRAYRVPKANALACMGKKPGGVDAYRAYR
>CP030007.1|AWV76827.1|3278892_3279861_+|NADH-oxidoreductase
MTMPTSQCPWRMQVHHIHQETPDVWTLSLLCHDYYPYRAGQYALVSVRNSADTLRAYTISSTPGVSEYITLTVRRIDDGAGSEWLTRDVKRGDYIWLSDAQGEFTCDDKTEDKFLLLAAGCGVTPIMSMRRWLAKYRPQADVQVIFSVRSPEDVIFAEEWRNYPVTLVAEHNATHGFVAGRLSRELLQSVPDIANRIVMTCGPAPYMEIVEKEVKALGVTRFFKEQFFTPVAEAATSGMKFTKLQPAQTFFGRVGTTLLEALESNNVPVAAACRAGVCGCCKTKVVSGEYTVTSTMTLTDAEIAEGYVLACSCHPQGDLVLA
>CP030007.1|AWV76826.1|3277229_3278882_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAFKAREYGIVDHYVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLNADASARVDNPMAELQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNAIYAQYHKIMAWLGTWPSDMNALLECSMEIGQMNFKVMSILDAGETSTYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLKQTEGTGVNVYTHGEMLPAHGYPELRKFKHLIGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRETLLGAADSLIDLVSREKLRHIFLIGGCDGARGERNYFTDFATRVPEDCLILTLACGKYRFNKLDFGNIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVTNIVTGPTAPGFLTPDLLAILNEKFGLRSVTNVEDDMKQLLSA
>CP030007.1|AWV76825.1|3276185_3277085_+|lysine-exporter-LysO-family-protein
MFSGLLIILLPLIVGYLIPLRHESALKLINRFLSWIVYVILFFMGISLAFLDNLATNLLSILHYSAVTVVVILLCNIAALFWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMMVAVIVVASSLAGGVINAFILDLPLKTSLAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSLLVPILMAFFSA
>CP030007.1|AWV78447.1|3275313_3276009_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKDIIGYIIAQVIGGIIAAAVLYVIASGKAGFDAAASGFASNGFGEHSPGGYSMLSAIVIEIVLTAGFLLVIHGATDKYAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIIGGILGGVLYRTLLEKRD
>CP030007.1|AWV76824.1|3273363_3275022_-|DUF2813-domain-containing-protein
MLLERVEIVGFRGINRLSLQLEQNNVLIGENAWGKSSLLDALTLLLSPEENLYHFVHDDFWFPPGDVNGREKHLHIILTFRESEPGRHRVRRFRPMSPCWVPCEDGFQRIFYRLEGEMAQNDGVLTLREFLDEKGNPIPLDNIDELARHLIRLSPVLRLRDARFMRRIRNGTVPNMPEVEVTARELDFLARELVSRPQNLTDGQIRQGLSAMVQLLEHYFSEQGTGQARHRLMRRRSHDEQRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTVRLDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEYVCRLVRESSRVTAYRLGPGGLNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPAMDMEHFMYRQGFDDVFHRVAMIPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVESVPTLLRKMFSRVLWLARGRAD
>CP030007.1|AWV76823.1|3272410_3273367_+|DUF535-domain-containing-protein
MSSIVDTPYSTLPQPKSGWQLFKSLASGSLTPGLAWQNPAYRRKFMLRSLATPFTTARLLGNLAKQPRLMQILRVQPGLPCRLHRPWLTVNMGRQTTLDALNDHYEMMSRHLPASLLNGYLSSQGITLVTLTGKEEQQFSVRLSADAFLDKEGEATLTFCDHQNTVLAELTFTLCTYQGKPTLFIGGMQGAKAHVPHEHIQLATKACHGLFPKRLLVEAVMTLAGAFPVEQILAVSNATHIYRSWRYRKKKEGKLLADYDSFWRSLGGQQQDNGNFALPLTMPRKPMEEIASKKRSEYRRRYALLDSLIQQVSQATAR
>CP030007.1|AWV76822.1|3271135_3272251_-|macrolide-transporter-subunit-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWKVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLTRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGETREREVVIGARNDTDVVVVKGLEEGEEVVTSETLPGAAQ
>CP030007.1|AWV76821.1|3269198_3271139_-|MacB-family-efflux-pump-subunit
MTALLELNDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALAKLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKALLTRLGLEERVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLLDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRQSRAAAPKEALPASTGWGQFSSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTRVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTISGRIMGQSWLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>CP030007.1|AWV76820.1|3268906_3269128_+|cold-shock-domain-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPVEAETVA
>CP030007.1|AWV76829.1|3280831_3282550_+|ubiquinone-dependent-pyruvate-dehydrogenase
MKQTVAAYIAKTLEQAGVKRIWGVTGDSLNGLSDSLNKMKTIEWMPTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAILNRGVSVVVLPGDVALKAAPETATTHWYSAPQPTITPAEEELKKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKLKAPVVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQFPYRAFYPTDAKIIQIDINPGSIGAHSKVDMALIGDIKSTLAALLPLLEEKTDRKFLDKALSDYSDARKGLDDLAKPSEKAIHPQYLAQQISYFADDDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAKATAPERQVVAMCGDGGFSMLMGDFLSVAQMKLPLKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDDALQRAFAIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR
>CP030007.1|AWV76830.1|3282588_3283590_+|low-specificity-L-threonine-aldolase
MIDLRSDTVTRPGRAMLEEMMAAPVGDDVYGDDPTVNELQRYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAPDGTLPLDKVAAKIKADDIHFARTKLLSLENTHNGKVLPREYLKAAWDFTRERKLGLHVDGARIFNAVVEYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNADYIRRANRWRKMTGGGMRQAGILAAAGLYALKNNVSRLKDDHDNAAWMAAQLREIGADVIRHDTNMLFVRVGDEHAAALGDFMKARGVLINASPVVRLVMHLDVNREQLTEVVKHWQAFLQR
>CP030007.1|AWV76831.1|3283600_3285037_+|SDR-family-NAD(P)-dependent-oxidoreductase
MPQRILVLGASGYIGQHLTTALSQQGHQVLAAARNTERLQKLHLPGVTCHNVDLNWPKALPALLEGVDTLYYLVHSMGEGGDFIAHERQVAMNVRDALRQTPVKQVIFLSSLQAPEHEQSDHLRARQLTAETLRSAHIPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPAEQHRVLEAAGPEVLSYQAQFEHFMRVSGRRRWLIPIPFPTRWISVWFLNVITSVPPTTAKALIQGLKHDLLADDRALRALIPQELIRFDDAVRNTLKEEEKLVNSSDWGYDAQAFARWRPEYGYYPKQAGCTVKTSASLAALWEVVNQIGGKERYFFGNILWQTRGALDLLVGHRLAKGRPAHPWLKVGDTVDSWKVIIVEPEKQLALLFGMKAPGLGRLCFTLKDNGDHRELDVRAWWHPHGMPGLFYWLLMIPAHLFIFRGMAKRIAQLAEQKQEGN
>CP030007.1|AWV76832.1|3285129_3286143_+|NAD(P)-dependent-oxidoreductase
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLQKMGAEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQEAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIQEDFRPARFACEFARSKAAGEEVIDLLAQSNPHTRFTVLRPQSLFGPHDKVFIPRLAQMMHHYGSVLLPRGGDALVDMTYYENAVHAMWLASQPECDKLVSGRAYNITNGEPCTLRSIVQRLIDELKIDCRIRSVPYPMLDMIARSMERFGSKSAKEPALTHYGVSKLNFDFTLDISRAENELGYKPIVSLDEGIVRTAAWLRDHGKLHR
>CP030007.1|AWV76833.1|3286289_3288101_-|chitinase
MNKRTLLSVLIAGACVAPLMAQAANLKETSSEPYTIKASDLAKKEKELTDFPLMASVKETIQTLDNAQVELIEPGRAANPDNVKRVEGIVKASDWEYLFPLRAQAYTYSNFLKAVGKFPALCKTYNDGRDSDAICRKELATMFAHFAQETGGHESWRPEAEWRQALVHVREMGWSEGQKGGYNGECNPDVWQGQTWPCGKDKDGDFLSYFGRGAKQLSYNYNYGPFSEAMYGDVRTLLDKPELVADTWLNLASAIFLFAYPQPPKPSMLQVIDGTWQPNDHDKANGLVPGFGVTTQIINGGVECGGPTEIAQSQNRIKYYKEFANYLKVPVPANEVMGCANMKQFDEGGAGALKIYWEQDWGWSADTPDGKTYSCQLVGYQTPFSAFKDGDYSKCVQHFFNVKIVNDEGSSETPDETPVTPTPTPSDDETPAPTPTPDETPVVVNHAPVAQIAGPIGAVEAGAQVSLSAEGSTDPDGNKLTYTWRSQDGQTVSGQDKAVVTFTAPESATAQQYEVSLTVSDGELSSTTSYLLNVKAKAATPSGEDTSYPAWSANSKYNAGDIVNNHGKLFQCKPFPYSGWCNNSPTYYEPGAGLAWAEAWTAL
>CP030007.1|AWV76834.1|3288235_3288676_-|type-III-secretion-system-invasion-protein-IagB
MKKLILLLLIISQSALANCWNKAAHYYHVDPYLLYAIANVESGMNPYAVGQNRDGTRDVGLMQINSSHFTALESRGIDEYRLITEPCTSIMVGASILAGMIRVYGYNWEAVGAYNAGLKKENYPQRMKYAHKVWAKYQQLKLAARY
>CP030007.1|AWV76835.1|3291734_3292532_-|prepilin-peptidase
MNTFSLMRDAFPVGFPIMSAILGGIVGSFLGVVAERVPGMVMDEEGSGNLLFPASNCPVCQHALAAWENIPLLSWLLLRGRCHQCGSAIPLRLFLVELISALFFGITAWCMPDVQALFSLWLLAAFLLPLAMIDWQHQLLPDCLTQPLLWAGLVLHAFDHTLPLRDALFGAVAGYLSLWLLYWAFRLITGREGLGYGDFKLLAALGAWCGWQVLPSIELAAALSGIVGYFAVNNLNKNNLTISFGPYLAFAGIVVFMSQQFAFTF
>CP030007.1|AWV76836.1|3292528_3293014_-|type-II-secretion-system-protein-M
MKERIAQLKSRYQNYSTREKIILKICAVAIVGAVVYYTGVIPLDNMIQNSKSTLKRQKETLNWMRSEIDKNHLQVQIVKTNNPRTVVENSAHEINLSLTDMRQEGQTLSFVLNRVNVYELRSWLREINQTSGVRLQKINLTPVDHLSDVKAQVQLTWSKNA
>CP030007.1|AWV76837.1|3293010_3294144_-|type-II-secretion-system-protein-GspL
MKQVLFVRPDSREGGKIMWCESGSERVEVVDSLEMLAEHPLATRVCLLLPASDMIFRHFTLPKKVASQAMAFSWMAEETLIGDVDNLHWTVLHKKGADVDAVAIDADRLRAALTRCQEAGLNVIQALPDAWLLPVTTGGSTLVAQDDSYWLRLSPHVAGEMEATLLPLLMQKAGVGEVWCYGDAPAKVHVDVQHAWQHPLALIQPQWQTCRVNLLHGEFSLKAGHGRAAKSMKAAMVAVGVLSVALLLGPRIAMAWMLVQQENRVQEEIVQVYQHHFPSMRQQTNIKYHFGQSLKKQSKGFFLQLDELENARQSVPAMEIELLEYDAQQNTLTLSVSAQNQPALQAFVNQTSENFDFTLQPVSTTEPYTAMIAGKHK
>CP030007.1|AWV76838.1|3294159_3295170_-|general-secretion-pathway-protein-GspK
MKRIRQQQGVALLVVLILLVMMSALAAKISQQFCRNLQKTHYQVSQQQLRWAMQTQEKVVKDRLQTDASGESKPLALDGDWHQPLETQGEDYTVVSQVEDAQDCFNVNNLLTADIAPQGQSAPGVAEKSRKARIVEQLLTESGLSPGTAEAVYFQLVDYLDGDSTTAKEGAESDAWAGVVPARQPANQMMRSIAEIKLLPAFPVTAYPKVSKLLCALPDAASKVDVNTLQPEQAAVLAAMFPGKLTRDDAVRLLDARPESGWENMEAFSKALEQAFPQLKDDLPQVADQFSINSRYFRVNYTGNTDELTLRVVSQLQVNNEAGEIVTWQRRYRMIE

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Crispr_ID: CP030007_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030007_4

3720135-3720235

Orphan

Consensus_repeat	Method
GTTCGACGGGAGGCTCGTCACTACCTTCGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030007_4

>merge|CP030007|4|3720135-3720235|CRISPRCasFinder
GTTCGACGGGAGGCTCGTCACTACCTTCGACGGGTACTAGCTTCAAGACAGCGCCAGCACTTGGTTTAGGTTCGACTGGAGGCTCGTCACTACCTTCGACG

>CP030007|4|4|3720135-3720235|CRISPRCasFinder
GTTCGACGGGAGGCTCGTCACTACCTTCGACG	GGTACTAGCTTCAAGACAGCGCCAGCACTTGGTTTAG
GTTCGACTGGAGGCTCGTCACTACCTTCGACG

Protein	Signature genes	Signature genes Name	Protein_function
CP030007.1\|AWV78462.1\|3724844_3725042_+\|hypothetical-protein	unknown	unknown	unknown
CP030007.1\|AWV77233.1\|3720893_3721460_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368819
CP030007.1\|AWV77232.1\|3718120_3719494_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
CP030007.1\|AWV77234.1\|3721490_3721709_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP030007.1\|AWV77226.1\|3715557_3715830_-\|hypothetical-protein	unknown	unknown	unknown
CP030007.1\|AWV77229.1\|3717059_3717389_-\|hypothetical-protein	unknown	unknown	unknown
CP030007.1\|AWV77239.1\|3725475_3725760_+\|host-nuclease-inhibitor-GamL	unknown	unknown	unknown
CP030007.1\|AWV77230.1\|3717385_3717823_-\|hypothetical-protein	unknown	unknown	unknown
CP030007.1\|AWV77238.1\|3725193_3725403_+\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236900
CP030007.1\|AWV77231.1\|3717819_3718131_-\|protein-ren	unknown	unknown	unknown
CP030007.1\|AWV77241.1\|3726521_3727139_+\|exonuclease	unknown	unknown	gnl\|CDD\|378216
CP030007.1\|AWV77224.1\|3714478_3714928_-\|recombination-protein-NinB	unknown	unknown	gnl\|CDD\|368607
CP030007.1\|AWV77225.1\|3715156_3715558_-\|hypothetical-protein	unknown	unknown	unknown
CP030007.1\|AWV77228.1\|3716586_3717063_-\|hypothetical-protein	unknown	unknown	unknown
CP030007.1\|AWV77240.1\|3725778_3726525_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
CP030007.1\|AWV77235.1\|3721817_3722477_+\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224885
CP030007.1\|AWV77236.1\|3723250_3723448_-\|hypothetical-protein	unknown	unknown	unknown
CP030007.1\|AWV77237.1\|3723872_3724415_+\|Pathogenesis-related-transcriptional-factor-and-ERF-protein	unknown	unknown	gnl\|CDD\|379158
CP030007.1\|AWV77223.1\|3714315_3714486_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182029
CP030007.1\|AWV77227.1\|3715834_3716590_-\|DUF551-domain-containing-protein	unknown	unknown	gnl\|CDD\|367946

Protein	Function_ID	Function_description	E-value
CP030007.1\|AWV77238.1\|3725193_3725403_+\|cell-division-protein-FtsZ	gnl\|CDD\|236900	PRK11354, kil, FtsZ inhibitor protein; Reviewed.	4.00543e-36
CP030007.1\|AWV77241.1\|3726521_3727139_+\|exonuclease	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	8.77687e-24
CP030007.1\|AWV77224.1\|3714478_3714928_-\|recombination-protein-NinB	gnl\|CDD\|368607	pfam05772, NinB, NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	3.57285e-51
CP030007.1\|AWV77232.1\|3718120_3719494_-\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	2.33512e-125
CP030007.1\|AWV77233.1\|3720893_3721460_-\|hypothetical-protein	gnl\|CDD\|368819	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT. YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.	0.00594597
CP030007.1\|AWV77240.1\|3725778_3726525_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	3.74345e-40
CP030007.1\|AWV77234.1\|3721490_3721709_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	9.41783e-11
CP030007.1\|AWV77235.1\|3721817_3722477_+\|LexA-family-transcriptional-regulator	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	2.10502e-34
CP030007.1\|AWV77237.1\|3723872_3724415_+\|Pathogenesis-related-transcriptional-factor-and-ERF-protein	gnl\|CDD\|379158	pfam13392, HNH_3, HNH endonuclease. This is a zinc-binding loop of Fold group 7 as found in endo-deoxy-ribonucleases and HNH nucleases.	5.62623e-14
CP030007.1\|AWV77223.1\|3714315_3714486_-\|hypothetical-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	9.68629e-25
CP030007.1\|AWV77227.1\|3715834_3716590_-\|DUF551-domain-containing-protein	gnl\|CDD\|367946	pfam04448, DUF551, Protein of unknown function (DUF551). This family represents the carboxy terminus of a protein of unknown function, found in dsDNA viruses with no RNA stage, including bacteriophages lambda and P22, and also in some Escherichia coli prophages.	1.7197e-09

>CP030007.1|AWV77232.1|3718120_3719494_-|replicative-DNA-helicase
MSRFIDLYVEQAVIGGIMLAAGRTDGVDMATDAIEGLTEDHFTATPHKVALRSYKRLNESGEKIDLLTLTSDLERLGALESAGGFAYLAECSKNTPSFANLASYCEKLREMHLGRRMTLALQVGIQKLSEPTTEGIADIIGNIQADISGIEHSADYGTEHITTGIDMSLETIQAIISGDIWKYKTELGMSTIDSAFGGFNNTDFIVVGGRPGMGKTMFSTTVTETVGLKNKKPVLFFSLEMPVEQISERVAFHRARVSKEDLLSKVSGKMDEAWGKVSHCMKEFIDSPIYINDKPSLSVHQVRAEARRMSKKLGGLGVVIVDYLQKMRMSDPENMNRSVGEIATGLKNLAKELRCPVIALAQLNRNLEQRANKRPVAADLRESGVIEQEADVIFMVYRDEKYNENTELKGITEIICVKSRHAPGAEKTYHFSSRYSGLDPVDFTYSGQMQQEADYEC
>CP030007.1|AWV77231.1|3717819_3718131_-|protein-ren
MSANTMKGKQAILRYLETHRTFTAKDVATECGMTINCITKNAIDLEKSRKIIRVSKVWRTVTYRLATPEEQAGTARSCTNGIFQECRNSAAMKRILSVYGVRA
>CP030007.1|AWV77230.1|3717385_3717823_-|hypothetical-protein
MKPTYEELEQKLAESQREFRAADATIENLQMKLEKLSSENAGLKKFCKDAAFDADYEAELGMERGGFTDALNNIKTPATDAFLAEVRDQGVEMFAKEMHADISGDDAREFAAQPRKGGATEEKQSFLSDEDCQAFVKAFTKGAAQ
>CP030007.1|AWV77229.1|3717059_3717389_-|hypothetical-protein
MSNIDKRPFRADGGDISTGRLREIADNPYGDEEKCWLAKRVLAQVDELEAAEKRIAELSHHLQCAHAFIEHTEAFGYEASNGILCCGDAQWNIDASKSALAAAGKGEAS
>CP030007.1|AWV77228.1|3716586_3717063_-|hypothetical-protein
MSTLTKEWLQLRIAELEEERDATPDVVNEDAANALAAMKLALASLEAEPVGEVVLGEYDDCGCHPDARVACIAADGQADWENFKDGTRLFTAPPASAVNAEPVSFDALRDAVAEVSGAPAMEWSDIYKGHQAVPFINFNSLARIVDKFCSAMLQGGKS
>CP030007.1|AWV77227.1|3715834_3716590_-|DUF551-domain-containing-protein
MTIKPVADIYLITYEDGSPYKSTRDAKEAIDAIGAGFKVEEFVGIEILRALMLQGAESLSNRDELPLDYLQGQKDGLEWAAQLAEANHPHTGDWLYDDPVELAKAIRKGPDMPELKSVPADADDNFYSWFCREWEQNYQPNRYSLSAKKHLGAIAESAWFACRAAMLQGADGNSPVIPDGWVACSERIPEIGTEIFYFCQGDGLRDCGIVSSSNFSGKGDAQLYVHAEGYDLRLGVDITHWMPLPAAPQQE
>CP030007.1|AWV77226.1|3715557_3715830_-|hypothetical-protein
MPKFKRIIISYFSGEPRELMRKAGFTWKFTRPVPIADSVEFYCCERKKKGPLPDNFRSVGWSDEGAFSYFTEEQIEACKQWAAAPQQEVK
>CP030007.1|AWV77225.1|3715156_3715558_-|hypothetical-protein
MARFSRIKLNPLDVVRGQFGVELNHIAYDSSLRKADCHYQVIRQTSHDGTLLFTHELLASALAEIAKMHSYSKNLPPKDWDKVIAIKYTLGPLWLTTVYGRVNLPAGSYPGEKQRVRMSVVCEYIYADGDSDA
>CP030007.1|AWV77224.1|3714478_3714928_-|recombination-protein-NinB
MKQHYCIVNDTVKENLIAYIRTLPVNPRAPMVVEAREETRTDKQNRLMWPLLKDLSDQVVWHGEKLTREEWKDLITVLVNQTQDQEQKSAPGINGGRVYFGVRTSKSSKRYMVDVIEAIYWFGTDRGVKFSEASSKRIAWAQEWRASRG
>CP030007.1|AWV77223.1|3714315_3714486_-|hypothetical-protein
MASPLARVITNHIYNVPARRQRKPAVKPSEIPTLKGYTARLVDQKWLRLAARRNHA
>CP030007.1|AWV77233.1|3720893_3721460_-|hypothetical-protein
MHSLAYQQSTGLEQRPLISIYQSVPRNNRKLIRIREAVKAWQKATPGQSQVHISQLVAKEWLARGGKGLLLAGSEHNTKQNFFRMINDPGPKNDKGLMLLIPVIIDVMARDNEKVAREFGLVAKTEAELIAEAMKECTEAHQAKLLGQPIQRLEKEVREAAEALLRFLPTESIAAVVTSLAAMAPGVM
>CP030007.1|AWV77234.1|3721490_3721709_-|XRE-family-transcriptional-regulator
MNNIRKIRRNIGLTQRQIAEELNLSTGAVCHYEKNKRSLSLEQCRAIVAALNKHGASVSVDDVFPPISNNAA
>CP030007.1|AWV77235.1|3721817_3722477_+|LexA-family-transcriptional-regulator
MTMKWYDLAKTLMKSQGINQEQLAEHLGITKGAVSHWLNARREPSLSEIAKILQFLGKKNFSVGAGGMIIDDTLKGDVEYAGPYNPGNKYPVISSVQAGSWCEAVEPYTLKDIDLWLESNAHIQGDAFWLLVEGESMTAPTGLSIPEGTYVLFDTGRDAVNGSLVIAKLSDSNEATFKKLVIDGGQKYLKGLNPQWPLVPVNGNCRIIGVAVETKLRLV
>CP030007.1|AWV77236.1|3723250_3723448_-|hypothetical-protein
MVLDEERISMKIQAMGRAVMELSLADLPMTQQNIIDKLEQYRKETGNVIGKGVNRDAAEIARKGN
>CP030007.1|AWV77237.1|3723872_3724415_+|Pathogenesis-related-transcriptional-factor-and-ERF-protein
MRPELNQEYLRKILTYDPESGHFKWNFNKGARNKSPYAGTQTSYGYIKILIDQKQYFAHRLAWLYVHGHWPEGFIDHINGDKADNRLVNLREAKREENCRNVSIKSTNTSGYIGISIDKRHGSWRAQIKVNRKQIALGTFQTKIDAVRAFNEAAVFHHGEYAIRKIKHNEEMLMKEFGHL
>CP030007.1|AWV78462.1|3724844_3725042_+|hypothetical-protein
MVERDEVGHLHGFEVSSGGMTLRDYFAAKAMQGRLANPDWLCSDDRTATEAYQIADAMLRARGAS
>CP030007.1|AWV77238.1|3725193_3725403_+|cell-division-protein-FtsZ
MINHYGTTPLIRQCVTPGMMAMHEGRTYRVSAVIQERKWVYLHTDAEIIRLSDCVIDVLLDGHGNPIQH
>CP030007.1|AWV77239.1|3725475_3725760_+|host-nuclease-inhibitor-GamL
MNAYLTYDRIEERRWVEQQLDDEKEKWIDDRAQQIIDMMPKEPSGLFHFSVPIDFSPYEGLRSDKAGEAYNDFISAVAYAQAEYDWEHRTGCPF
>CP030007.1|AWV77240.1|3725778_3726525_+|phage-recombination-protein-Bet
MSTALSTMAGKLAARLGMDAGTDLMNTLKNTAFKGGNVTDEQFTALLIVANQYGLNPWTKEIYAFPDKGGIVPVVGVDGWARIINEHPQFDGMEFSYDKEEGACTCKIYRKDRKHPTIVTEYMGECKRNTQPWQSHPTRMLRHKTLIQCARLAFGFAGIFDQDEAERVIEGTTAEVHAGHESDSRRPDLIAKGESAARLGTVKYQEFWVALSAEEKQVIGAVEKRRMYDMSLAVDNAEPVNVADAEAE
>CP030007.1|AWV77241.1|3726521_3727139_+|exonuclease
MMEQRTPEWFAARCGKVTASRLADVMARTKSGYSTSRQNYMAELICQRLTGKLEEGFSNAAMMRGTELEPVAREMYALNEFDAEITEVGLIDHPTIPGFAASPDGLVNDDGLIEIKCPNTWTHLETLKTGEPKRQYMLQMHAQMMCTGRKWCDFVSFDDRLPPDLAYFKKRIHFDEELAREIESEVKSFIADLESEIQKITERAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP030007_1	1.5\|3252294\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3252294-3252325	32	CP030007.1	4674510-4674541	1	0.969

1. spacer 1.5|3252294|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to position: 4674510-4674541, mismatch: 1, identity: 0.969

cgcaccgtaatgcatcaaacgctgggtgacta	CRISPR spacer
cgcaccgtaatgcatcaaacgctgggtgatta	Protospacer
*****************************.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030007_1	1.11\|3252654\|34\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3252654-3252687	34	NC_047875	Salmonella phage UPF_BP1, complete genome	9721-9754	3	0.912
CP030007_1	1.7\|3252414\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3252414-3252445	32	NZ_CP035421	Leisingera sp. NJS204 plasmid unnamed4, complete sequence	25247-25278	5	0.844
CP030007_2	2.6\|3262520\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3262520-3262551	32	MT251347	Klebsiella phage LASTA, complete genome	60146-60177	5	0.844
CP030007_2	2.6\|3262520\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3262520-3262551	32	MT251348	Klebsiella phage SJM3, complete genome	60146-60177	5	0.844
CP030007_2	2.5\|3262460\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3262460-3262491	32	MH389777	Dickeya phage vB_DsoM_JA11, complete genome	45842-45873	6	0.812
CP030007_2	2.5\|3262460\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3262460-3262491	32	MH460462	Dickeya phage vB_DsoM_JA33, complete genome	45832-45863	6	0.812
CP030007_2	2.5\|3262460\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3262460-3262491	32	MH460460	Dickeya phage vB_DsoM_JA13, complete genome	46037-46068	6	0.812
CP030007_1	1.7\|3252414\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3252414-3252445	32	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	440509-440540	7	0.781
CP030007_1	1.7\|3252414\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3252414-3252445	32	NZ_CP009572	Sphingomonas taxi strain ATCC 55669 plasmid STP1, complete sequence	74501-74532	7	0.781
CP030007_3	3.2\|3280253\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3280253-3280284	32	JF974302	Vibrio phage VBpm10, * SEQUENCING IN PROGRESS *, 8 unordered pieces	21036-21067	7	0.781
CP030007_1	1.5\|3252294\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3252294-3252325	32	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	552157-552188	8	0.75
CP030007_1	1.8\|3252474\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3252474-3252505	32	MN694752	Marine virus AFVG_250M643, complete genome	8433-8464	8	0.75
CP030007_2	2.8\|3262641\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3262641-3262672	32	LR794146	Bacteriophage APSE-7 strain HaCipinimaritimae-2836 genome assembly, chromosome: 1	8386-8417	8	0.75
CP030007_2	2.8\|3262641\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3262641-3262672	32	LR794149	Bacteriophage APSE-7 strain HaCicuneomaculata-2628 genome assembly, chromosome: 1	9304-9335	8	0.75
CP030007_2	2.8\|3262641\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3262641-3262672	32	NZ_CP012644	Rufibacter tibetensis strain 1351 plasmid 1, complete sequence	160605-160636	8	0.75
CP030007_3	3.2\|3280253\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3280253-3280284	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1534665-1534696	8	0.75
CP030007_3	3.2\|3280253\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3280253-3280284	32	MG592513	Vibrio phage 1.142.O._10N.261.49.E11, partial genome	26630-26661	8	0.75
CP030007_3	3.2\|3280253\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3280253-3280284	32	MG592412	Vibrio phage 1.028.O._10N.286.45.B6, partial genome	26630-26661	8	0.75
CP030007_3	3.2\|3280253\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3280253-3280284	32	MG592527	Vibrio phage 1.159.O._10N.261.46.F12, partial genome	26630-26661	8	0.75
CP030007_3	3.2\|3280253\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3280253-3280284	32	MG592588	Vibrio phage 1.217.O._10N.261.45.A1, partial genome	26630-26661	8	0.75
CP030007_3	3.2\|3280253\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3280253-3280284	32	MG592589	Vibrio phage 1.219.O._10N.261.45.E2, partial genome	26630-26661	8	0.75
CP030007_3	3.2\|3280253\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3280253-3280284	32	MG592524	Vibrio phage 1.156.O._10N.261.45.A6, partial genome	26630-26661	8	0.75
CP030007_3	3.2\|3280253\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3280253-3280284	32	MG592669	Vibrio phage 2.159.A._10N.261.46.F12, partial genome	26630-26661	8	0.75
CP030007_3	3.2\|3280253\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3280253-3280284	32	MG592670	Vibrio phage 2.159.B._10N.261.46.F12, partial genome	26630-26661	8	0.75
CP030007_3	3.2\|3280253\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3280253-3280284	32	MG592507	Vibrio phage 1.136.O._10N.261.45.E11, partial genome	26630-26661	8	0.75
CP030007_3	3.3\|3280313\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3280313-3280344	32	NC_023006	Pseudomonas phage PPpW-3 DNA, complete sequence	36335-36366	8	0.75
CP030007_1	1.7\|3252414\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3252414-3252445	32	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	199651-199682	9	0.719
CP030007_1	1.7\|3252414\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3252414-3252445	32	NZ_CP049252	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed5, complete sequence	17144-17175	9	0.719
CP030007_2	2.6\|3262520\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3262520-3262551	32	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	961364-961395	9	0.719
CP030007_3	3.2\|3280253\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3280253-3280284	32	NC_015184	Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence	62533-62564	9	0.719
CP030007_3	3.2\|3280253\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3280253-3280284	32	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	475099-475130	9	0.719
CP030007_3	3.2\|3280253\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3280253-3280284	32	NZ_CP035511	Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence	283146-283177	9	0.719
CP030007_3	3.2\|3280253\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3280253-3280284	32	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	22327-22358	9	0.719
CP030007_3	3.2\|3280253\|32\|CP030007\|CRISPRCasFinder,CRT,PILER-CR	3280253-3280284	32	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	714186-714217	11	0.656

1. spacer 1.11|3252654|34|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to NC_047875 (Salmonella phage UPF_BP1, complete genome) position: , mismatch: 3, identity: 0.912

gtgcagtaaccggaatggatatccagtcatgcag	CRISPR spacer
atgcagtcaccggaatggatatccagtcgtgcag	Protospacer
.****** ********************.*****

2. spacer 1.7|3252414|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035421 (Leisingera sp. NJS204 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.844

agccgccgcagcagcgatgcgcc--gttccgacg	CRISPR spacer
agccgccgccgcagcgctgcgccctgttccgg--	Protospacer
********* ****** ******  ******.

3. spacer 2.6|3262520|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to MT251347 (Klebsiella phage LASTA, complete genome) position: , mismatch: 5, identity: 0.844

atgcgggtgctcggaatcccgccaccccgcaa	CRISPR spacer
atgcgggtactcggaaccccgccacccccgca	Protospacer
********.*******.***********   *

4. spacer 2.6|3262520|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to MT251348 (Klebsiella phage SJM3, complete genome) position: , mismatch: 5, identity: 0.844

atgcgggtgctcggaatcccgccaccccgcaa	CRISPR spacer
atgcgggtactcggaaccccgccacccccgca	Protospacer
********.*******.***********   *

5. spacer 2.5|3262460|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to MH389777 (Dickeya phage vB_DsoM_JA11, complete genome) position: , mismatch: 6, identity: 0.812

aagggatatcacgttagttactccgc-ggcatg	CRISPR spacer
gatggatttcacgttaggtactccgcttgcat-	Protospacer
.* **** ********* ********  ****

6. spacer 2.5|3262460|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to MH460462 (Dickeya phage vB_DsoM_JA33, complete genome) position: , mismatch: 6, identity: 0.812

aagggatatcacgttagttactccgc-ggcatg	CRISPR spacer
gatggatttcacgttaggtactccgcttgcat-	Protospacer
.* **** ********* ********  ****

7. spacer 2.5|3262460|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to MH460460 (Dickeya phage vB_DsoM_JA13, complete genome) position: , mismatch: 6, identity: 0.812

aagggatatcacgttagttactccgc-ggcatg	CRISPR spacer
gatggatttcacgttaggtactccgcttgcat-	Protospacer
.* **** ********* ********  ****

8. spacer 1.7|3252414|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 7, identity: 0.781

agccgccgcagcagcgatgcgccgttccgacg	CRISPR spacer
agccggcgcagcagcgatgcggcgtcgcgggc	Protospacer
***** *************** ***. **.

9. spacer 1.7|3252414|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009572 (Sphingomonas taxi strain ATCC 55669 plasmid STP1, complete sequence) position: , mismatch: 7, identity: 0.781

agccgccgcagcagcgatgcgccgttccgacg-	CRISPR spacer
gaccgccgcagcaacgatgcggcg-tgcaacga	Protospacer
..***********.******* ** * *.***

10. spacer 3.2|3280253|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to JF974302 (Vibrio phage VBpm10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces) position: , mismatch: 7, identity: 0.781

aaaacacgctggcgcgtgtcggtgtcgccgta	CRISPR spacer
acaatgctctggcgcgtttcagtgtcgccgtt	Protospacer
* **..* ********* **.**********

11. spacer 1.5|3252294|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 8, identity: 0.75

cgcaccgtaatgcatcaaacgctgggtgacta	CRISPR spacer
cgcaccgtaaagcattaaacgcttcgggaaag	Protospacer
********** ****.*******  * **  .

12. spacer 1.8|3252474|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to MN694752 (Marine virus AFVG_250M643, complete genome) position: , mismatch: 8, identity: 0.75

atattgaacagtcccgcattttcgat-ttgcaa	CRISPR spacer
tcgttgaacagcaccgcattttcgatgatgta-	Protospacer
 ..********. *************  **.*

13. spacer 2.8|3262641|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to LR794146 (Bacteriophage APSE-7 strain HaCipinimaritimae-2836 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

aagccctcagaagcgcctgatgatgctgacga	CRISPR spacer
caagcctcagaagcgcttgaagatgctggcat	Protospacer
 *. ************.*** *******.*.

14. spacer 2.8|3262641|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to LR794149 (Bacteriophage APSE-7 strain HaCicuneomaculata-2628 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

aagccctcagaagcgcctgatgatgctgacga	CRISPR spacer
caagcctcagaagcgcttgaagatgctggcat	Protospacer
 *. ************.*** *******.*.

15. spacer 2.8|3262641|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012644 (Rufibacter tibetensis strain 1351 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

aagccctcagaagcgcctgatgatgctgacga	CRISPR spacer
agcagctgagaagcgcctggtgatgctgggga	Protospacer
*.   ** ***********.********. **

16. spacer 3.2|3280253|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

aaaacacg----ctggcgcgtgtcggtgtcgccgta	CRISPR spacer
----cccggcacctggcgcgtgacggtctcgccgtt	Protospacer
    * **    ********** **** *******

17. spacer 3.2|3280253|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to MG592513 (Vibrio phage 1.142.O._10N.261.49.E11, partial genome) position: , mismatch: 8, identity: 0.75

aaaacacgctggcgcgtgtcggtgtcgccgta	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgtt	Protospacer
*  *..* ********* **.**********

18. spacer 3.2|3280253|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to MG592412 (Vibrio phage 1.028.O._10N.286.45.B6, partial genome) position: , mismatch: 8, identity: 0.75

aaaacacgctggcgcgtgtcggtgtcgccgta	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgtt	Protospacer
*  *..* ********* **.**********

19. spacer 3.2|3280253|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to MG592527 (Vibrio phage 1.159.O._10N.261.46.F12, partial genome) position: , mismatch: 8, identity: 0.75

aaaacacgctggcgcgtgtcggtgtcgccgta	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgtt	Protospacer
*  *..* ********* **.**********

20. spacer 3.2|3280253|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to MG592588 (Vibrio phage 1.217.O._10N.261.45.A1, partial genome) position: , mismatch: 8, identity: 0.75

aaaacacgctggcgcgtgtcggtgtcgccgta	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgtt	Protospacer
*  *..* ********* **.**********

21. spacer 3.2|3280253|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to MG592589 (Vibrio phage 1.219.O._10N.261.45.E2, partial genome) position: , mismatch: 8, identity: 0.75

aaaacacgctggcgcgtgtcggtgtcgccgta	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgtt	Protospacer
*  *..* ********* **.**********

22. spacer 3.2|3280253|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to MG592524 (Vibrio phage 1.156.O._10N.261.45.A6, partial genome) position: , mismatch: 8, identity: 0.75

aaaacacgctggcgcgtgtcggtgtcgccgta	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgtt	Protospacer
*  *..* ********* **.**********

23. spacer 3.2|3280253|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to MG592669 (Vibrio phage 2.159.A._10N.261.46.F12, partial genome) position: , mismatch: 8, identity: 0.75

aaaacacgctggcgcgtgtcggtgtcgccgta	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgtt	Protospacer
*  *..* ********* **.**********

24. spacer 3.2|3280253|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to MG592670 (Vibrio phage 2.159.B._10N.261.46.F12, partial genome) position: , mismatch: 8, identity: 0.75

aaaacacgctggcgcgtgtcggtgtcgccgta	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgtt	Protospacer
*  *..* ********* **.**********

25. spacer 3.2|3280253|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to MG592507 (Vibrio phage 1.136.O._10N.261.45.E11, partial genome) position: , mismatch: 8, identity: 0.75

aaaacacgctggcgcgtgtcggtgtcgccgta	CRISPR spacer
actatgctctggcgcgtttcagtgtcgccgtt	Protospacer
*  *..* ********* **.**********

26. spacer 3.3|3280313|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to NC_023006 (Pseudomonas phage PPpW-3 DNA, complete sequence) position: , mismatch: 8, identity: 0.75

gagggagaaagccaggaagtctggcagttaga	CRISPR spacer
cggcgagaaggccaggaagtcgggcagcaaaa	Protospacer
 .* *****.*********** *****. *.*

27. spacer 1.7|3252414|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.719

agccgccgcagcagcgatgcgccgttccgacg	CRISPR spacer
gctgggcgaagcagcgatgcgccgtgccgcca	Protospacer
. . * ** **************** *** *.

28. spacer 1.7|3252414|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049252 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

agccgccgcagcagcgatgcgccg----ttccgacg	CRISPR spacer
ggccgcgccagcagcgatgcgccgcaaatcgc----	Protospacer
.*****  ****************    *. *

29. spacer 2.6|3262520|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 9, identity: 0.719

atgcgggtgctcggaatcccgccaccccgcaa	CRISPR spacer
gcagggctgctcggaatcccggcacccgcgaa	Protospacer
... ** ************** *****   **

30. spacer 3.2|3280253|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to NC_015184 (Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence) position: , mismatch: 9, identity: 0.719

aaaacacgctggcgcgtgtcggtgtcgccgta	CRISPR spacer
tgagatcgcgggcgagtgtcggtgtcgccgcc	Protospacer
 .*.  *** **** ***************.

31. spacer 3.2|3280253|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 9, identity: 0.719

aaaacacgctggcgcgtgtcggtgtcgccgta	CRISPR spacer
atcctgggctgccgggtgtcggtgtcgccgga	Protospacer
*   .. **** ** *************** *

32. spacer 3.2|3280253|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035511 (Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence) position: , mismatch: 9, identity: 0.719

aaaacacgctggcgcgtgtcggtgtcgccgta	CRISPR spacer
tagaactgctggcgcgtgtcggcatcgccgag	Protospacer
 *.*  .***************..****** .

33. spacer 3.2|3280253|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

aaaacacgctggcgcgtgtcggtgtcgccgta	CRISPR spacer
atcctgggctgccgcgtgtcgatgtcgccgga	Protospacer
*   .. **** *********.******** *

34. spacer 3.2|3280253|32|CP030007|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 11, identity: 0.656

aaaacacgctggcgcgtgtcggtgtcgccgta	CRISPR spacer
ctgcggcgctggcgcgggtcggagtcgccccc	Protospacer
  .  .********** ***** ****** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1869194 : 1878440

Enterobacteria_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWV75537.1\|1869194_1870259_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.4e-104	54.4
AWV75538.1\|1870274_1871141_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.2e-110	66.3
AWV75539.1\|1871153_1872044_+	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	2.8e-28	31.3
AWV75540.1\|1872054_1872603_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	9.1e-54	54.4
AWV75541.1\|1872738_1874145_+	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	M4QQM4	Ostreococcus_lucimarinus_virus	6.8e-37	28.3
AWV75542.1\|1874397_1875564_+	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	4.1e-112	54.0
AWV75543.1\|1875612_1876617_-	NAD-dependent epimerase	A0A2K9L0I7	Tupanvirus	2.5e-33	29.0
AWV75544.1\|1876808_1877789_+	LPS O-antigen chain length determinant protein WzzB	NA	NA	NA	NA
AWV75545.1\|1877828_1878440_-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	A0A2H4UVM0	Bodo_saltans_virus	1.6e-14	29.3

DBSCAN-SWA_2

2036198 : 2167443

159

Cronobacter_phage(22.86%)

transposase,integrase,protease,terminase,lysis,holin,tRNA,capsid,coat,tail,portal,head

attL 2109550:2109579|attR 2155160:2155189

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWV75686.1\|2036198_2037932_-\|tRNA	arginine--tRNA ligase	A0A1V0SIS8	Klosneuvirus	2.6e-86	36.8
AWV75687.1\|2038170_2038731_+	VOC family protein	NA	NA	NA	NA
AWV75688.1\|2038809_2039553_+	copper homeostasis protein CutC	NA	NA	NA	NA
AWV75689.1\|2039533_2039773_+	hypothetical protein	NA	NA	NA	NA
AWV75690.1\|2039727_2040699_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
AWV75691.1\|2040695_2041439_-	carboxy-S-adenosyl-L-methionine synthase CmoA	A0A1S6L2V9	Erwinia_phage	6.1e-29	30.2
AWV75692.1\|2041479_2041875_-	hypothetical protein	NA	NA	NA	NA
AWV75693.1\|2041926_2042700_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	2.3e-58	81.1
AWV75694.1\|2042678_2043992_-	DUF3596 domain-containing protein	Q8W658	Enterobacteria_phage	6.0e-221	85.3
AWV78402.1\|2044047_2044284_-	excisionase	Q8W657	Enterobacteria_phage	4.8e-36	85.9
AWV75695.1\|2044434_2044659_-	hypothetical protein	A0A1B5FPG2	Escherichia_phage	3.7e-14	58.3
AWV75696.1\|2044659_2045073_-	hypothetical protein	A0A286S1S2	Klebsiella_phage	1.6e-47	67.2
AWV75697.1\|2045069_2045291_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.1e-18	66.7
AWV75698.1\|2045262_2045670_-	hypothetical protein	A0A286S1Q6	Klebsiella_phage	1.1e-43	78.6
AWV75699.1\|2045662_2045896_-	hypothetical protein	NA	NA	NA	NA
AWV75700.1\|2046456_2046750_-	hypothetical protein	NA	NA	NA	NA
AWV75701.1\|2046921_2047614_-	helix-turn-helix transcriptional regulator	A0A2H4FNG6	Salmonella_phage	4.3e-85	65.4
AWV78403.1\|2047767_2047983_+	transcriptional regulator	A0A2H4FNF3	Salmonella_phage	2.4e-10	50.0
AWV75702.1\|2047984_2048194_+	DUF4222 domain-containing protein	NA	NA	NA	NA
AWV75703.1\|2048186_2049209_+	hypothetical protein	V5URT9	Shigella_phage	3.1e-47	55.2
AWV75704.1\|2049312_2051184_+	bifunctional DNA primase/helicase	K7PK08	Enterobacteria_phage	4.5e-230	61.3
AWV75705.1\|2051185_2051497_+	hypothetical protein	NA	NA	NA	NA
AWV75706.1\|2051493_2052276_+	antitermination protein	F1C595	Cronobacter_phage	9.4e-113	79.1
AWV75707.1\|2052570_2053056_+	HNH endonuclease	C4ML56	Xanthomonas_virus	1.5e-23	42.7
AWV75708.1\|2053131_2053356_+	hypothetical protein	NA	NA	NA	NA
AWV75709.1\|2053467_2053848_+	hypothetical protein	F1C592	Cronobacter_phage	1.9e-50	80.2
AWV75710.1\|2053834_2054119_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.2e-17	51.1
AWV75711.1\|2054115_2054565_+	lysozyme	A0A0M4R365	Salmonella_phage	1.7e-58	79.7
AWV75712.1\|2054564_2055110_+	hypothetical protein	K7PHH7	Enterobacteria_phage	7.1e-51	69.4
AWV75713.1\|2055226_2055442_+	hypothetical protein	NA	NA	NA	NA
AWV75714.1\|2055642_2056467_+	hypothetical protein	K7PH02	Enterobacteria_phage	2.9e-19	77.4
AWV75715.1\|2056479_2056707_+	hypothetical protein	NA	NA	NA	NA
AWV75716.1\|2056723_2058181_+	glycosyltransferase family 2 protein	K7PKP3	Enterobacterial_phage	6.9e-218	73.6
AWV75717.1\|2058453_2059662_+\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	100.0
AWV75718.1\|2059630_2059852_-	hypothetical protein	Q38575	Escherichia_phage	5.1e-16	70.7
AWV75719.1\|2060016_2060610_+	hypothetical protein	S4TR53	Salmonella_phage	1.8e-100	85.8
AWV75720.1\|2060602_2060971_+	HNH endonuclease	S4TTG9	Salmonella_phage	3.7e-59	91.8
AWV75721.1\|2061076_2061571_+\|terminase	terminase small subunit	S4TNN3	Salmonella_phage	1.7e-83	100.0
AWV75722.1\|2061567_2063229_+\|terminase	terminase large subunit	S4TSQ6	Salmonella_phage	0.0e+00	98.4
AWV75723.1\|2063287_2065222_+\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	0.0e+00	95.0
AWV75724.1\|2065425_2066781_+\|portal	phage portal protein	S4TTG7	Salmonella_phage	1.7e-258	98.4
AWV75725.1\|2066777_2067692_+\|head,tail	phage gp6-like head-tail connector protein	S4TNN1	Salmonella_phage	4.3e-109	76.9
AWV75726.1\|2067688_2068015_+\|head,tail	phage gp6-like head-tail connector protein	S4TSQ3	Salmonella_phage	3.4e-48	90.7
AWV75727.1\|2068023_2068374_+\|head,tail	head-tail adaptor protein	S4TND9	Salmonella_phage	8.9e-55	92.2
AWV75728.1\|2068370_2068820_+	hypothetical protein	K7P6X4	Enterobacteria_phage	2.9e-74	98.7
AWV75729.1\|2068816_2069164_+	DUF3168 domain-containing protein	Q9MCS8	Enterobacteria_phage	1.5e-57	98.3
AWV75730.1\|2069223_2069667_+	hypothetical protein	K7PHL2	Enterobacterial_phage	4.6e-72	93.8
AWV75731.1\|2069675_2070059_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	4.4e-63	93.7
AWV75732.1\|2070067_2070346_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	1.8e-42	95.7
AWV75733.1\|2070401_2070743_+	hypothetical protein	NA	NA	NA	NA
AWV78404.1\|2070800_2074103_+\|tail	phage tail tape measure protein	K7P7L6	Enterobacteria_phage	0.0e+00	85.2
AWV75734.1\|2074105_2074444_+\|tail	phage tail protein	K7PKL8	Enterobacterial_phage	7.3e-38	59.8
AWV75735.1\|2074440_2075199_+\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	2.3e-95	63.6
AWV75736.1\|2075201_2075912_+	peptidase P60	F1C573	Cronobacter_phage	1.5e-96	69.8
AWV75737.1\|2075911_2076499_+\|tail	tail assembly protein	A0A1P8DTG7	Proteus_phage	6.1e-48	47.4
AWV75738.1\|2076551_2080112_+	host specificity protein	Q9MCU0	Escherichia_phage	0.0e+00	69.8
AWV78405.1\|2080156_2080471_+	hypothetical protein	A0A2P0WA17	Enterobacter_phage	7.8e-34	67.6
AWV75739.1\|2080471_2081143_+	hypothetical protein	A0A2P0WA07	Enterobacter_phage	7.6e-87	73.1
AWV75740.1\|2081250_2081484_+	cor protein	E4WL42	Enterobacteria_phage	8.6e-30	75.3
AWV78406.1\|2082071_2082833_+\|tail	phage tail protein	G8C7K5	Escherichia_phage	4.0e-92	67.6
AWV75741.1\|2082928_2083195_-	DinI family protein	K7PKM2	Enterobacterial_phage	1.5e-38	93.2
AWV75742.1\|2083559_2084126_-	hydrolase	NA	NA	NA	NA
AWV75743.1\|2084388_2086161_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
AWV75744.1\|2086162_2086606_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
AWV75745.1\|2086633_2087374_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
AWV75746.1\|2087408_2087930_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.6e-10	35.1
AWV75747.1\|2088010_2088625_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
AWV75748.1\|2088633_2089644_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	2.4e-07	29.9
AWV75749.1\|2089696_2090482_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
AWV75750.1\|2090478_2091234_-	zinc ABC transporter ATP-binding protein ZnuC	W6JKT0	Anomala_cuprea_entomopoxvirus	8.8e-15	29.8
AWV75751.1\|2091296_2092256_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
AWV75752.1\|2092271_2093591_+	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	1.2e-14	40.9
AWV75753.1\|2093708_2094680_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
AWV75754.1\|2094723_2096166_-	pyruvate kinase	NA	NA	NA	NA
AWV75755.1\|2096280_2097150_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AWV75756.1\|2097506_2098982_+	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	6.0e-76	36.2
AWV75757.1\|2099215_2101027_+	phosphogluconate dehydratase	NA	NA	NA	NA
AWV75758.1\|2101066_2101708_+	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA
AWV75759.1\|2101782_2102961_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
AWV75760.1\|2103132_2103783_+	tellurite resistance TerB family protein	NA	NA	NA	NA
AWV75761.1\|2103858_2105934_+	oligopeptidase B	NA	NA	NA	NA
AWV75762.1\|2105915_2106578_-	exodeoxyribonuclease X	NA	NA	NA	NA
AWV75763.1\|2106602_2107253_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
AWV75764.1\|2107364_2107595_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	7.0e-16	61.8
AWV75765.1\|2107732_2108104_+	CopC domain-containing protein YobA	NA	NA	NA	NA
AWV75766.1\|2108105_2108975_+	hypothetical protein	NA	NA	NA	NA
AWV75767.1\|2108991_2109330_+	DUF2511 domain-containing protein	NA	NA	NA	NA
2109550:2109579	attL	NA	NA	NA	NA
AWV75768.1\|2109652_2110738_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.6e-147	68.4
AWV75769.1\|2110706_2110979_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	2.9e-29	64.4
AWV75770.1\|2111138_2111891_-	SAM-dependent methyltransferase	A0A1P8VVC9	Erythrobacter_phage	9.9e-35	41.4
AWV75771.1\|2112179_2112395_-	TraR/DksA family transcriptional regulator	A0A0P0ZCX5	Stx2-converting_phage	3.2e-15	61.4
AWV75772.1\|2112486_2112687_-	hypothetical protein	NA	NA	NA	NA
AWV75773.1\|2112683_2112956_-	hypothetical protein	K7P7M4	Enterobacteria_phage	4.2e-20	57.5
AWV75774.1\|2112952_2113171_-	hypothetical protein	NA	NA	NA	NA
AWV75775.1\|2113167_2113719_-	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	9.7e-56	59.4
AWV75776.1\|2114035_2114716_-	exonuclease	M9NZE1	Enterobacteria_phage	7.1e-125	93.8
AWV75777.1\|2114712_2115558_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	2.1e-70	61.6
AWV75778.1\|2115576_2115861_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.7e-48	96.8
AWV75779.1\|2115933_2116143_-	cell division protein FtsZ	M9NZE2	Enterobacteria_phage	6.7e-34	95.7
AWV78407.1\|2116294_2116474_-	hypothetical protein	Q3HQW9	Burkholderia_phage	9.6e-05	55.1
AWV75780.1\|2116679_2117000_-	hypothetical protein	NA	NA	NA	NA
AWV75781.1\|2117639_2118227_-	hypothetical protein	NA	NA	NA	NA
AWV75782.1\|2118238_2118994_-	XRE family transcriptional regulator	G8C7L8	Escherichia_phage	2.1e-77	59.6
AWV75783.1\|2119029_2119257_+	Cro/Cl family transcriptional regulator	A0A2I6PIE5	Escherichia_phage	1.4e-16	57.7
AWV75784.1\|2119286_2119829_+	regulator	M9NZI6	Enterobacteria_phage	3.2e-75	79.4
AWV75785.1\|2119914_2120823_+	hypothetical protein	K7PGZ0	Enterobacteria_phage	2.9e-158	99.3
AWV75786.1\|2120819_2121509_+	phage replication protein	G8C7U6	Escherichia_phage	1.1e-125	94.8
AWV75787.1\|2121977_2122661_+	hypothetical protein	NA	NA	NA	NA
AWV75788.1\|2122661_2123150_+	hypothetical protein	NA	NA	NA	NA
AWV75789.1\|2123562_2124018_+	hypothetical protein	I6PD71	Cronobacter_phage	5.4e-60	66.9
AWV75790.1\|2124017_2124188_+	hypothetical protein	K7P7K0	Enterobacteria_phage	7.7e-20	94.3
AWV75791.1\|2124180_2124471_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	1.8e-45	90.6
AWV75792.1\|2124467_2124830_+	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	1.6e-51	82.2
AWV75793.1\|2124826_2124943_+	hypothetical protein	NA	NA	NA	NA
AWV75794.1\|2124939_2125629_+	antiterminator	I6PDF8	Cronobacter_phage	2.5e-56	51.5
AWV75795.1\|2126031_2126349_+\|holin	holin	E7C9S8	Salmonella_phage	8.9e-46	86.7
AWV75796.1\|2126335_2126776_+	lysozyme	A0A0M4R365	Salmonella_phage	1.4e-57	76.5
AWV75797.1\|2126772_2127255_+\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	4.1e-42	64.8
AWV75798.1\|2127318_2127726_+	hypothetical protein	NA	NA	NA	NA
AWV75799.1\|2128372_2128933_+\|terminase	terminase small subunit	G0ZND3	Cronobacter_phage	2.0e-77	76.3
AWV75800.1\|2128919_2130392_+	DNA-packaging protein	G0ZND4	Cronobacter_phage	5.5e-255	86.3
AWV75801.1\|2130403_2131855_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	8.1e-118	50.1
AWV75802.1\|2131772_2132780_+\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	2.4e-113	67.7
AWV75803.1\|2132847_2133495_+	hypothetical protein	NA	NA	NA	NA
AWV75804.1\|2133682_2134039_-	hypothetical protein	NA	NA	NA	NA
AWV75805.1\|2134084_2135473_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	2.0e-153	59.2
AWV75806.1\|2135476_2135911_+	hypothetical protein	F1C5E0	Cronobacter_phage	5.1e-52	74.3
AWV75807.1\|2135920_2137018_+\|coat	phage coat protein	F1C5E1	Cronobacter_phage	7.6e-161	77.7
AWV75808.1\|2137027_2137393_+	hypothetical protein	NA	NA	NA	NA
AWV75809.1\|2137395_2137776_+	hypothetical protein	F1C5E2	Cronobacter_phage	2.4e-29	55.3
AWV75810.1\|2137775_2137949_+	50S ribosomal protein L13	I6R0P9	Salmonella_phage	5.1e-11	48.2
AWV75811.1\|2137948_2138305_+	hypothetical protein	G0ZNE2	Cronobacter_phage	6.1e-27	55.6
AWV75812.1\|2138307_2138772_+	HK97 gp10 family phage protein	A0A2P1MXA4	Escherichia_phage	2.2e-29	43.5
AWV75813.1\|2138768_2139152_+	hypothetical protein	F1C5E4	Cronobacter_phage	2.3e-40	64.6
AWV75814.1\|2139215_2139959_+	DNA breaking-rejoining protein	F1C5E5	Cronobacter_phage	5.9e-72	86.0
AWV75815.1\|2140016_2140709_+	hypothetical protein	G0ZNE7	Cronobacter_phage	1.8e-54	49.5
AWV75816.1\|2140756_2141137_+	hypothetical protein	NA	NA	NA	NA
AWV75817.1\|2141136_2141493_+	hypothetical protein	A0A0P0IE45	Acinetobacter_phage	5.9e-14	47.0
AWV75818.1\|2141547_2144478_+\|tail	tail protein (tape measure)	F1C5E9	Cronobacter_phage	1.8e-161	46.8
AWV75819.1\|2144477_2144975_+	hypothetical protein	F1C5F0	Cronobacter_phage	3.5e-89	91.5
AWV75820.1\|2144974_2145445_+	hypothetical protein	F1C5F1	Cronobacter_phage	8.2e-80	93.6
AWV75821.1\|2145454_2145847_+	peptidoglycan endopeptidase	F1C5F2	Cronobacter_phage	1.6e-65	87.9
AWV75822.1\|2145833_2148311_+	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	0.0e+00	92.1
AWV75823.1\|2148369_2150385_+	hypothetical protein	F1C5A8	Cronobacter_phage	5.5e-40	61.8
AWV75824.1\|2150414_2151896_-	hypothetical protein	NA	NA	NA	NA
AWV75825.1\|2151892_2152834_-	glycosyltransferase	U5P087	Shigella_phage	7.2e-160	91.4
AWV75826.1\|2152830_2153193_-	GtrA family protein	U5P0S6	Shigella_phage	2.0e-49	84.2
AWV75827.1\|2153305_2153611_+	hypothetical protein	I6PCW5	Cronobacter_phage	1.0e-14	39.6
AWV75828.1\|2153610_2154879_+	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	4.9e-228	90.5
AWV75829.1\|2155308_2156289_-	DUF535 domain-containing protein	NA	NA	NA	NA
2155160:2155189	attR	NA	NA	NA	NA
AWV75830.1\|2156456_2157101_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	2.1e-54	48.8
AWV75831.1\|2157135_2157375_-	DUF1480 family protein	NA	NA	NA	NA
AWV78408.1\|2157481_2158924_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AWV75832.1\|2159001_2161635_-	MCE family protein	NA	NA	NA	NA
AWV78409.1\|2161603_2162887_-	paraquat-inducible protein A	NA	NA	NA	NA
AWV75833.1\|2163019_2163517_+	GAF domain-containing protein	NA	NA	NA	NA
AWV75834.1\|2163613_2164300_+	RNA chaperone ProQ	NA	NA	NA	NA
AWV75835.1\|2164319_2166368_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	7.8e-82	32.6
AWV75836.1\|2166561_2167443_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_3

3682427 : 3730653

Cronobacter_phage(24.14%)

holin,tail,integrase,terminase

attL 3682201:3682247|attR 3730667:3730713

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3682201:3682247	attL	NA	NA	NA	NA
AWV77183.1\|3682427_3682751_-	hypothetical protein	K7PGV5	Enterobacterial_phage	7.0e-22	49.5
AWV77184.1\|3682750_3682990_-	hypothetical protein	K7P7E2	Enterobacteria_phage	1.0e-25	69.2
AWV77185.1\|3683102_3683465_+	GtrA family protein	B9UDL8	Salmonella_phage	4.3e-44	71.7
AWV77186.1\|3683461_3684394_+	glycosyltransferase	U5P087	Shigella_phage	1.9e-160	91.4
AWV77187.1\|3684403_3685906_+	hypothetical protein	Q8LTG0	Salmonella_phage	4.3e-37	27.1
AWV77188.1\|3685953_3688158_-	hypothetical protein	F1C5A8	Cronobacter_phage	8.7e-39	60.6
AWV77189.1\|3688216_3690694_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	0.0e+00	92.7
AWV78460.1\|3690680_3691046_-	peptidoglycan endopeptidase	F1C5F2	Cronobacter_phage	3.3e-60	85.7
AWV77190.1\|3691069_3691534_-	HNH endonuclease	S4TVL1	Salmonella_phage	5.5e-28	42.4
AWV77191.1\|3691610_3692081_-	hypothetical protein	F1C5F1	Cronobacter_phage	2.4e-79	92.9
AWV77192.1\|3692080_3692578_-	hypothetical protein	F1C5F0	Cronobacter_phage	3.8e-91	92.1
AWV77193.1\|3692619_3692847_-	hypothetical protein	NA	NA	NA	NA
AWV77194.1\|3692857_3695533_-\|tail	phage tail tape measure protein	A0A1B1W284	Salmonella_phage	3.8e-97	34.9
AWV77195.1\|3695590_3695953_-	hypothetical protein	NA	NA	NA	NA
AWV77196.1\|3696062_3696737_-	hypothetical protein	G0ZNE7	Cronobacter_phage	1.0e-54	50.2
AWV77197.1\|3696794_3697538_-	DNA breaking-rejoining protein	F1C5E5	Cronobacter_phage	1.7e-71	86.0
AWV77198.1\|3697601_3697985_-	hypothetical protein	F1C5E4	Cronobacter_phage	8.9e-40	63.8
AWV77199.1\|3697981_3698389_-	HK97 gp10 family phage protein	A0A291AXD9	Shigella_phage	1.4e-30	51.1
AWV77200.1\|3698391_3698748_-	hypothetical protein	G0ZNE2	Cronobacter_phage	2.7e-27	56.4
AWV77201.1\|3698747_3698921_-	50S ribosomal protein L13	Q5G8X7	Enterobacteria_phage	4.6e-12	50.9
AWV77202.1\|3698965_3699511_-	HNH endonuclease	A0A2D2W633	Pectobacterium_phage	6.3e-23	44.0
AWV78461.1\|3699566_3699965_-	hypothetical protein	G0ZNE1	Cronobacter_phage	1.7e-54	79.2
AWV77203.1\|3700008_3700557_-	HNH endonuclease	A0A2D2W633	Pectobacterium_phage	2.3e-20	35.3
AWV77204.1\|3700649_3700943_-	hypothetical protein	A0A1V0E5P8	Salmonella_phage	1.5e-42	89.7
AWV77205.1\|3700952_3702029_-	hypothetical protein	Q5G8Y0	Enterobacteria_phage	1.9e-188	91.3
AWV77206.1\|3702046_3702496_-	hypothetical protein	A0A1V0E5Q8	Salmonella_phage	7.1e-65	86.6
AWV77207.1\|3702508_3703774_-	hypothetical protein	Q5G8Y2	Enterobacteria_phage	7.6e-213	87.6
AWV77208.1\|3703776_3705510_-	hypothetical protein	G0ZND6	Cronobacter_phage	6.5e-215	66.5
AWV77209.1\|3705469_3706819_-	DUF1073 domain-containing protein	A0A1V0E5Q5	Salmonella_phage	1.3e-231	87.3
AWV77210.1\|3707273_3707615_-	hypothetical protein	NA	NA	NA	NA
AWV77211.1\|3707759_3709013_-\|terminase	PBSX family phage terminase large subunit	I6RSK1	Salmonella_phage	4.4e-213	96.7
AWV77212.1\|3709009_3709444_-	ubiquitin carboxyl-hydrolase	Q716H4	Shigella_phage	8.5e-47	73.9
AWV77213.1\|3709450_3709669_-	hypothetical protein	NA	NA	NA	NA
AWV77214.1\|3709819_3710095_-	hypothetical protein	K7P6G5	Enterobacteria_phage	2.8e-27	71.4
AWV77215.1\|3710413_3710890_-	Rz lytic protein	NA	NA	NA	NA
AWV77216.1\|3710877_3711522_-	glycoside hydrolase family 19 protein	F1C5D2	Cronobacter_phage	3.1e-37	43.8
AWV77217.1\|3711505_3711877_-\|holin	holin	A0A2D1GNJ3	Pseudomonas_phage	1.3e-06	32.4
AWV77218.1\|3711969_3712512_-	HNH endonuclease	D6PIK0	uncultured_phage	1.1e-22	40.7
AWV77219.1\|3712725_3713415_-	antiterminator	I6PDF8	Cronobacter_phage	6.0e-55	50.2
AWV77220.1\|3713411_3713528_-	hypothetical protein	NA	NA	NA	NA
AWV77221.1\|3713514_3713715_-	hypothetical protein	NA	NA	NA	NA
AWV77222.1\|3713711_3714323_-	recombination protein NinG	M9NYX8	Enterobacteria_phage	2.4e-39	48.4
AWV77223.1\|3714315_3714486_-	hypothetical protein	G8C7V4	Escherichia_phage	5.0e-19	82.1
AWV77224.1\|3714478_3714928_-	recombination protein NinB	I6R9D0	Salmonella_phage	2.5e-33	47.2
AWV77225.1\|3715156_3715558_-	hypothetical protein	NA	NA	NA	NA
AWV77226.1\|3715557_3715830_-	hypothetical protein	NA	NA	NA	NA
AWV77227.1\|3715834_3716590_-	DUF551 domain-containing protein	K7P7E4	Enterobacteria_phage	2.2e-34	37.7
AWV77228.1\|3716586_3717063_-	hypothetical protein	M9NZE4	Enterobacteria_phage	1.9e-15	44.8
AWV77229.1\|3717059_3717389_-	hypothetical protein	NA	NA	NA	NA
AWV77230.1\|3717385_3717823_-	hypothetical protein	K7PGR4	Enterobacteria_phage	3.6e-29	67.0
AWV77231.1\|3717819_3718131_-	protein ren	M1FPD5	Enterobacteria_phage	7.7e-18	50.5
AWV77232.1\|3718120_3719494_-	replicative DNA helicase	E5AGF0	Erwinia_phage	4.9e-165	63.1
AWV77233.1\|3720893_3721460_-	hypothetical protein	NA	NA	NA	NA
AWV77234.1\|3721490_3721709_-	XRE family transcriptional regulator	A0A0N7C2U7	Escherichia_phage	1.9e-10	47.0
AWV77235.1\|3721817_3722477_+	LexA family transcriptional regulator	F1C599	Cronobacter_phage	3.0e-72	65.6
AWV77236.1\|3723250_3723448_-	hypothetical protein	G8C7T7	Escherichia_phage	2.4e-25	96.9
AWV77237.1\|3723872_3724415_+	Pathogenesis-related transcriptional factor and ERF protein	A0A0N9RV98	Escherichia_phage	1.4e-30	44.4
AWV78462.1\|3724844_3725042_+	hypothetical protein	B5WZV1	Pseudomonas_phage	4.7e-05	51.9
AWV77238.1\|3725193_3725403_+	cell division protein FtsZ	M9NZE2	Enterobacteria_phage	6.7e-34	95.7
AWV77239.1\|3725475_3725760_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.7e-48	96.8
AWV77240.1\|3725778_3726525_+	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	1.8e-65	65.8
AWV77241.1\|3726521_3727139_+	exonuclease	A0A0S2SY31	Pseudomonas_phage	3.6e-59	57.3
AWV77242.1\|3727379_3727706_+	protein ninX	R9VYJ6	Serratia_phage	1.0e-12	40.6
AWV77243.1\|3727695_3728229_+	hypothetical protein	A0A1B1PEF9	Pectobacterium_phage	8.0e-23	38.0
AWV77244.1\|3728191_3728431_+	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	1.2e-10	47.4
AWV77245.1\|3728440_3728626_+	hypothetical protein	A0A1B0V7L5	Salmonella_phage	5.3e-06	50.0
AWV77246.1\|3728710_3728908_+	hypothetical protein	S4TWN3	Salmonella_phage	1.1e-12	50.0
AWV77247.1\|3729068_3729269_+	hypothetical protein	G8C7S1	Escherichia_phage	6.0e-32	95.5
AWV78463.1\|3729277_3729613_+	DNA-binding protein	NA	NA	NA	NA
AWV78464.1\|3729609_3730653_+\|integrase	integrase	G8C7S0	Escherichia_phage	4.7e-200	97.1
3730667:3730713	attR	NA	NA	NA	NA

DBSCAN-SWA_4

4016602 : 4089497

uncultured_Caudovirales_phage(44.44%)

protease,terminase,tRNA,capsid,tail,portal,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWV77510.1\|4016602_4017955_-\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
AWV77511.1\|4017966_4018824_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
AWV77512.1\|4018836_4019595_-	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	R9W0U9	Flavobacterium_phage	1.4e-25	43.0
AWV77513.1\|4019780_4020980_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
AWV77514.1\|4021072_4021630_-	ribosome recycling factor	NA	NA	NA	NA
AWV77515.1\|4021797_4022523_-	UMP kinase	NA	NA	NA	NA
AWV77516.1\|4022672_4023524_-	elongation factor Ts	NA	NA	NA	NA
AWV77517.1\|4023641_4024367_-	30S ribosomal protein S2	NA	NA	NA	NA
AWV77518.1\|4024688_4025483_+	type I methionyl aminopeptidase	NA	NA	NA	NA
AWV78473.1\|4025545_4028221_+	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA
AWV77519.1\|4028253_4029078_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
AWV77520.1\|4029189_4029579_+	DUF3461 family protein	NA	NA	NA	NA
AWV77521.1\|4029668_4030826_-	CdaR family transcriptional regulator	NA	NA	NA	NA
AWV77522.1\|4030972_4032406_-\|protease	serine endoprotease DegP	A0A1B1IT49	uncultured_Mediterranean_phage	2.5e-26	29.2
AWV77523.1\|4032538_4034053_-	dGTPase	NA	NA	NA	NA
AWV77524.1\|4034135_4034834_+	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA
AWV77525.1\|4034826_4035636_+	vitamin B12 ABC transporter substrate-binding protein BtuF	NA	NA	NA	NA
AWV77526.1\|4035660_4036284_+	hypothetical protein	NA	NA	NA	NA
AWV77527.1\|4036342_4036687_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	4.5e-27	51.4
AWV77528.1\|4036772_4038173_-	H(+)/Cl(-) exchange transporter ClcA	NA	NA	NA	NA
AWV77529.1\|4038350_4039631_+	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA
AWV77530.1\|4039719_4040079_-	hypothetical protein	NA	NA	NA	NA
AWV77531.1\|4040103_4042086_-	Fe(3+)-hydroxamate ABC transporter permease FhuB	NA	NA	NA	NA
AWV77532.1\|4042082_4042973_-	Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD	NA	NA	NA	NA
AWV77533.1\|4042972_4043770_-	Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC	G9BWD6	Planktothrix_phage	3.0e-13	26.9
AWV77534.1\|4043820_4046031_-	ferrichrome porin FhuA	NA	NA	NA	NA
AWV77535.1\|4046235_4046934_-	type 1 fimbrial protein	NA	NA	NA	NA
AWV77536.1\|4047227_4049705_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
AWV77537.1\|4049725_4050439_-	molecular chaperone	NA	NA	NA	NA
AWV77538.1\|4050482_4051091_-	type 1 fimbrial protein	NA	NA	NA	NA
AWV77539.1\|4051363_4053889_-	bifunctional glycosyl transferase/transpeptidase	NA	NA	NA	NA
AWV77540.1\|4054041_4056471_-	ATP-dependent helicase HrpB	A0A0G2Y9F4	Acanthamoeba_polyphaga_mimivirus	4.5e-36	30.3
AWV77541.1\|4056544_4057099_+	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA
AWV77542.1\|4057088_4057793_+	DNA/RNA nuclease SfsA	NA	NA	NA	NA
AWV77543.1\|4057969_4058425_+	RNA polymerase-binding transcription factor DksA	NA	NA	NA	NA
AWV77544.1\|4058484_4059375_+\|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	NA	NA	NA	NA
AWV78474.1\|4059390_4060815_+	polynucleotide adenylyltransferase	H7BUW3	unidentified_phage	1.6e-25	31.5
AWV77545.1\|4060811_4061291_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
AWV77546.1\|4061414_4062206_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA
AWV77547.1\|4062217_4063069_+	pantoate--beta-alanine ligase	NA	NA	NA	NA
AWV77548.1\|4063101_4063482_+	aspartate 1-decarboxylase	NA	NA	NA	NA
AWV77549.1\|4063759_4064368_+	fimbrial assembly protein	NA	NA	NA	NA
AWV77550.1\|4064448_4065192_+	fimbrial chaperone	NA	NA	NA	NA
AWV77551.1\|4065273_4067865_+	outer membrane usher protein	NA	NA	NA	NA
AWV77552.1\|4067893_4068469_+	fimbrial protein	NA	NA	NA	NA
AWV77553.1\|4068495_4069059_+	fimbrial protein	NA	NA	NA	NA
AWV77554.1\|4069073_4069682_+	fimbrial protein	NA	NA	NA	NA
AWV77555.1\|4069693_4070770_+	fimbrial protein StkG	NA	NA	NA	NA
AWV77556.1\|4070771_4072019_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
AWV77557.1\|4072082_4072523_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
AWV77558.1\|4072628_4073399_-	ABC transporter permease	NA	NA	NA	NA
AWV77559.1\|4073395_4074322_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.3e-22	32.3
AWV77560.1\|4074429_4075092_+	carbonate dehydratase	NA	NA	NA	NA
AWV77561.1\|4075242_4076586_+	hypothetical protein	NA	NA	NA	NA
AWV77562.1\|4076632_4077169_-	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	1.3e-17	33.1
AWV77563.1\|4077362_4080668_-\|tail	phage tail tape measure protein	Q9MCS3	Enterobacteria_phage	9.3e-295	56.2
AWV77564.1\|4080681_4082343_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
AWV77565.1\|4082326_4082683_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	3.9e-58	94.0
AWV77566.1\|4082956_4083400_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	1.1e-49	63.3
AWV77567.1\|4083399_4083693_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	1.3e-43	84.5
AWV77568.1\|4083689_4084028_-\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.8e-52	90.2
AWV78475.1\|4084024_4085251_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	2.0e-234	97.3
AWV77569.1\|4085261_4085822_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	2.9e-100	97.8
AWV77570.1\|4085873_4087040_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	5.2e-216	99.7
AWV77571.1\|4087260_4087443_-	hypothetical protein	NA	NA	NA	NA
AWV77572.1\|4087745_4089497_-	DNA primase	Q7M2A8	Enterobacteria_phage	3.2e-129	51.8

DBSCAN-SWA_5

4562185 : 4574776

uncultured_Caudovirales_phage(55.56%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWV77992.1\|4562185_4563220_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	3.4e-110	57.9
AWV78491.1\|4563269_4564544_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	4.4e-144	60.0
AWV77993.1\|4564585_4565026_-	peptidase	A0A1W6JNS2	Morganella_phage	3.6e-29	53.3
AWV77994.1\|4565219_4566119_-	LysR family transcriptional regulator	NA	NA	NA	NA
AWV77995.1\|4566217_4566745_+	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	7.2e-16	37.1
AWV77996.1\|4566741_4567974_+	MFS transporter	NA	NA	NA	NA
AWV77997.1\|4568022_4568358_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AWV78492.1\|4568363_4569077_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.2e-95	71.7
AWV77998.1\|4569133_4569562_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	6.2e-50	70.0
AWV77999.1\|4569611_4570895_-	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	2.9e-175	75.1
AWV78000.1\|4570991_4571345_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	2.2e-21	57.3
AWV78001.1\|4571607_4572066_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
AWV78493.1\|4572574_4574776_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.9e-134	45.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP030007

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection