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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP029805 Bacillus anthracis strain London_499 chromosome, complete genome 4 crisprs cas3,csa3,WYL,cas14k,DinG,DEDDh,cas14j 0 1 10 0
CP029806 Bacillus anthracis strain London_499 plasmid pX01, complete sequence 0 crisprs RT,c2c4_V-U1,csa3 0 0 13 0
CP029807 Bacillus anthracis strain London_499 plasmid pX02, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. CP029805
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029805_1 1064907-1065000 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029805_2 1177414-1177522 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029805_3 2720360-2720557 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029805_5 3266837-3266939 Orphan NA
1 spacers
csa3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP029805_4 4.1|3098569|27|CP029805|CRISPRCasFinder 3098569-3098595 27 KJ094023 Listeria phage LP-101, complete genome 3876-3902 4 0.852
CP029805_4 4.1|3098569|27|CP029805|CRISPRCasFinder 3098569-3098595 27 NC_022766 Bacillus phage Glittering, complete genome 9024-9050 5 0.815
CP029805_4 4.1|3098569|27|CP029805|CRISPRCasFinder 3098569-3098595 27 NC_003037 Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence 1229260-1229286 6 0.778
CP029805_4 4.1|3098569|27|CP029805|CRISPRCasFinder 3098569-3098595 27 NZ_CP021794 Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence 438058-438084 6 0.778
CP029805_4 4.1|3098569|27|CP029805|CRISPRCasFinder 3098569-3098595 27 NZ_CP021809 Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence 127169-127195 6 0.778
CP029805_4 4.1|3098569|27|CP029805|CRISPRCasFinder 3098569-3098595 27 NC_020527 Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence 1227597-1227623 6 0.778
CP029805_4 4.1|3098569|27|CP029805|CRISPRCasFinder 3098569-3098595 27 NZ_CP021798 Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence 850854-850880 6 0.778
CP029805_4 4.1|3098569|27|CP029805|CRISPRCasFinder 3098569-3098595 27 NC_017324 Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence 513839-513865 6 0.778
CP029805_4 4.1|3098569|27|CP029805|CRISPRCasFinder 3098569-3098595 27 NC_018683 Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence 498252-498278 6 0.778

1. spacer 4.1|3098569|27|CP029805|CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 4, identity: 0.852

cgtctttggctcttctggtttctcttc	CRISPR spacer
catttctggctcttctggtttcttttc	Protospacer
*.*.*.*****************.***

2. spacer 4.1|3098569|27|CP029805|CRISPRCasFinder matches to NC_022766 (Bacillus phage Glittering, complete genome) position: , mismatch: 5, identity: 0.815

cgtctttggctcttctggtttctcttc	CRISPR spacer
gttcaatggctcttctggtttctcatc	Protospacer
  **  ****************** **

3. spacer 4.1|3098569|27|CP029805|CRISPRCasFinder matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctat	Protospacer
*.   ******************** .

4. spacer 4.1|3098569|27|CP029805|CRISPRCasFinder matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctat	Protospacer
*.   ******************** .

5. spacer 4.1|3098569|27|CP029805|CRISPRCasFinder matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctgt	Protospacer
*.   ******************** .

6. spacer 4.1|3098569|27|CP029805|CRISPRCasFinder matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctat	Protospacer
*.   ******************** .

7. spacer 4.1|3098569|27|CP029805|CRISPRCasFinder matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctat	Protospacer
*.   ******************** .

8. spacer 4.1|3098569|27|CP029805|CRISPRCasFinder matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctat	Protospacer
*.   ******************** .

9. spacer 4.1|3098569|27|CP029805|CRISPRCasFinder matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctgt	Protospacer
*.   ******************** .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 258908 : 266857 6 uncultured_virus(33.33%) NA NA
DBSCAN-SWA_2 297536 : 305913 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_3 446339 : 477006 55 Bacillus_phage(70.73%) terminase,head,integrase,tail,capsid,protease attL 450681:450696|attR 465343:465358
DBSCAN-SWA_4 480894 : 485120 6 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_5 1838333 : 1847066 8 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_6 2156167 : 2163291 10 Bacillus_phage(71.43%) NA NA
DBSCAN-SWA_7 3446395 : 3483269 43 uncultured_Caudovirales_phage(33.33%) holin,terminase,head,tail,capsid,transposase,protease,portal NA
DBSCAN-SWA_8 3495607 : 3507161 25 Bacillus_phage(68.42%) integrase attL 3489700:3489716|attR 3513496:3513512
DBSCAN-SWA_9 3713574 : 3789759 99 Bacillus_phage(92.98%) holin,terminase,head,integrase,tail,tRNA,capsid,protease,portal attL 3746966:3746982|attR 3791550:3791566
DBSCAN-SWA_10 4818508 : 4860742 51 Staphylococcus_phage(26.67%) holin,terminase,head,tRNA,capsid,protease,portal NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP029806
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 1765 2 Clostridioides_phage(100.0%) NA NA
DBSCAN-SWA_2 6659 : 8468 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_3 25239 : 33123 7 Bacillus_phage(33.33%) integrase attL 14544:14558|attR 30439:30453
DBSCAN-SWA_4 98262 : 98550 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_5 111553 : 113799 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_6 124283 : 124616 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_7 132110 : 135811 2 Salmonella_phage(50.0%) transposase NA
DBSCAN-SWA_8 142765 : 145060 1 Clostridioides_phage(100.0%) NA NA
DBSCAN-SWA_9 154243 : 155287 1 Bacillus_phage(100.0%) integrase attL 146588:146602|attR 157195:157209
DBSCAN-SWA_10 159264 : 160497 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_11 166979 : 168065 1 Brevibacillus_phage(100.0%) NA NA
DBSCAN-SWA_12 171296 : 172391 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_13 175747 : 178411 1 Klosneuvirus(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage