CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029023	Candidatus Sulcia muelleri isolate SMTERNIG chromosome, complete genome	2 crisprs	NA	5	3	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029023_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029023_1

99487-99682

Orphan

Consensus_repeat	Method
TTTAATTTTAAATTAAATTAAATT	CRISPRCasFinder

4 spacers

The CRISPR arrays of CP029023_1

>merge|CP029023|1|99487-99682|CRISPRCasFinder
TTTTATTTTTATTTAAAATAGTTTTATTAGCTGATAAAGTTTTAAAAAACATTTATTTTTTTATAAAAAAAAAGTATATATTATATATATATTATATTTTAATTTCATTTTGATTTTCAATTATAATTTAATTTTAAATTAAATTAAATTTTTATTTTAAATTAAATTAAATTTTTATTTTAAATTAAATTAAATT

>CP029023|1|1|99487-99682|CRISPRCasFinder
TTTTATTTTTATTTAAAATAGTTT	TATTAGCTGATAAAGTTTTAAAAAACA
TTTATTTTTTTATAAAAAAAAAGT	ATATATTATATATATA
TTATATTTTAATTTCATTTTGATT	TTCAATTATAATTTAA
TTTTAAATTAAATTAAATTTTTAT	TTTAAATTAAATTAAAT
TTTTATTTTAAATTAAATTAAATT

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Crispr_ID: CP029023_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029023_2

239591-240054

Orphan

Consensus_repeat	Method
ATTAAAAATTTTAAATAAATTGAAAAA	CRISPRCasFinder

8 spacers

The CRISPR arrays of CP029023_2

>merge|CP029023|2|239591-240054|CRISPRCasFinder
AGTTTTAAAAATAAATAAATTTAAAAAAGTAATTTTAAAATTAAAACAAGATTATAAATTAAAAATTTTTAATAAATTGAAAATAAAGGCTAATTTAGATAAATTCAAAATTTTTAATAAATTGAAAATAAATTATAATTTAGAGAAATTAAAAATTTTAAATAAATTGAAAAACTTTTCTTCTTTAGAATTAGAAGAATTATTAAAAATTTTTAATAAATTGAAAAAATATTTTAATTATTTTAATTTAGGTATTTTAAAAAATTTTAATAAATTTAAAAAATGTTCTCAGTTAGAGAGATTAAAAATTTTTAATCAATTGAAAAAAAGTTTTAATTTATCTAATATAAAAGAAACGAAACTAAATTAAATTAAATTAAATTAAATTAAAAAAAAATGTCAATTAAAAAAAAAAAACCGATTACTTCAAGTCAAAGATTCAAAATAATAAATTCATTTAAAGA

>CP029023|2|2|239591-240054|CRISPRCasFinder
AGTTTTAAAAATAAATAAATTTAAAAA	AGTAATTTTAAAATTAAAACAAGATTATAA
ATTAAAAATTTTTAATAAATTGAAAAT	AAAGGCTAATTTAGATAA
ATTCAAAATTTTTAATAAATTGAAAAT	AAATTATAATTTAGAGAA
ATTAAAAATTTTAAATAAATTGAAAAA	CTTTTCTTCTTTAGAATTAGAAGAATT
ATTAAAAATTTTTAATAAATTGAAAAA	ATATTTTAATTATTTTAA
TTTAGGTATTTTAAAAAATTTTAATAA	ATTTAAAAAATGTTCTCAGTTAGAGAG
ATTAAAAATTTTTAATCAATTGAAAAA	AAGTTTTAATTTATCTAATATAAAAGAAACGAAACTAAATTAAATTAAATTAAATTAAATTA
AAAAAAAATGTCAATTAAAAAAAAAAA	ACCGATTACTTCAAGTCAAAG
ATTCAAAATAATAAATTCATTTAAAGA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	56940-56955	0	1.0
CP029023_1	1.4\|99642\|17\|CP029023\|CRISPRCasFinder	99642-99658	17	CP029023.1	99688-99704	0	1.0
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	74848-74863	1	0.938
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	136457-136472	1	0.938
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	178159-178174	1	0.938
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	243306-243321	1	0.938
CP029023_1	1.3\|99602\|16\|CP029023\|CRISPRCasFinder	99602-99617	16	CP029023.1	52747-52762	1	0.938
CP029023_1	1.3\|99602\|16\|CP029023\|CRISPRCasFinder	99602-99617	16	CP029023.1	135165-135180	1	0.938
CP029023_1	1.3\|99602\|16\|CP029023\|CRISPRCasFinder	99602-99617	16	CP029023.1	248151-248166	1	0.938
CP029023_1	1.3\|99602\|16\|CP029023\|CRISPRCasFinder	99602-99617	16	CP029023.1	52747-52762	1	0.938
CP029023_1	1.3\|99602\|16\|CP029023\|CRISPRCasFinder	99602-99617	16	CP029023.1	248151-248166	1	0.938
CP029023_1	1.4\|99642\|17\|CP029023\|CRISPRCasFinder	99642-99658	17	CP029023.1	41095-41111	1	0.941
CP029023_2	2.5\|239819\|18\|CP029023\|CRISPRCasFinder	239819-239836	18	CP029023.1	117028-117045	1	0.944
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	1839-1854	2	0.875
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	21734-21749	2	0.875
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	74850-74865	2	0.875
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	80764-80779	2	0.875
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	86536-86551	2	0.875
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	103704-103719	2	0.875
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	135415-135430	2	0.875
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	156156-156171	2	0.875
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	156158-156173	2	0.875
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	167416-167431	2	0.875
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	169273-169288	2	0.875
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	174204-174219	2	0.875
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	182384-182399	2	0.875
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	191145-191160	2	0.875
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	213241-213256	2	0.875
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	239508-239523	2	0.875
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	243307-243322	2	0.875
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	244791-244806	2	0.875
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	247605-247620	2	0.875
CP029023_1	1.3\|99602\|16\|CP029023\|CRISPRCasFinder	99602-99617	16	CP029023.1	6790-6805	2	0.875
CP029023_1	1.3\|99602\|16\|CP029023\|CRISPRCasFinder	99602-99617	16	CP029023.1	6790-6805	2	0.875
CP029023_1	1.3\|99602\|16\|CP029023\|CRISPRCasFinder	99602-99617	16	CP029023.1	70773-70788	2	0.875
CP029023_1	1.3\|99602\|16\|CP029023\|CRISPRCasFinder	99602-99617	16	CP029023.1	106904-106919	2	0.875
CP029023_1	1.3\|99602\|16\|CP029023\|CRISPRCasFinder	99602-99617	16	CP029023.1	169948-169963	2	0.875
CP029023_1	1.3\|99602\|16\|CP029023\|CRISPRCasFinder	99602-99617	16	CP029023.1	265508-265523	2	0.875
CP029023_1	1.4\|99642\|17\|CP029023\|CRISPRCasFinder	99642-99658	17	CP029023.1	19308-19324	2	0.882
CP029023_1	1.4\|99642\|17\|CP029023\|CRISPRCasFinder	99642-99658	17	CP029023.1	23818-23834	2	0.882
CP029023_1	1.4\|99642\|17\|CP029023\|CRISPRCasFinder	99642-99658	17	CP029023.1	38743-38759	2	0.882
CP029023_1	1.4\|99642\|17\|CP029023\|CRISPRCasFinder	99642-99658	17	CP029023.1	83324-83340	2	0.882
CP029023_1	1.4\|99642\|17\|CP029023\|CRISPRCasFinder	99642-99658	17	CP029023.1	99683-99699	2	0.882
CP029023_1	1.4\|99642\|17\|CP029023\|CRISPRCasFinder	99642-99658	17	CP029023.1	101405-101421	2	0.882
CP029023_1	1.4\|99642\|17\|CP029023\|CRISPRCasFinder	99642-99658	17	CP029023.1	141881-141897	2	0.882
CP029023_1	1.4\|99642\|17\|CP029023\|CRISPRCasFinder	99642-99658	17	CP029023.1	202689-202705	2	0.882
CP029023_1	1.4\|99642\|17\|CP029023\|CRISPRCasFinder	99642-99658	17	CP029023.1	221260-221276	2	0.882
CP029023_1	1.4\|99642\|17\|CP029023\|CRISPRCasFinder	99642-99658	17	CP029023.1	250426-250442	2	0.882
CP029023_1	1.4\|99642\|17\|CP029023\|CRISPRCasFinder	99642-99658	17	CP029023.1	265180-265196	2	0.882
CP029023_2	2.2\|239675\|18\|CP029023\|CRISPRCasFinder	239675-239692	18	CP029023.1	179770-179787	2	0.889
CP029023_2	2.5\|239819\|18\|CP029023\|CRISPRCasFinder	239819-239836	18	CP029023.1	6781-6798	2	0.889
CP029023_2	2.5\|239819\|18\|CP029023\|CRISPRCasFinder	239819-239836	18	CP029023.1	15279-15296	2	0.889
CP029023_2	2.5\|239819\|18\|CP029023\|CRISPRCasFinder	239819-239836	18	CP029023.1	41212-41229	2	0.889
CP029023_2	2.5\|239819\|18\|CP029023\|CRISPRCasFinder	239819-239836	18	CP029023.1	77884-77901	2	0.889
CP029023_2	2.5\|239819\|18\|CP029023\|CRISPRCasFinder	239819-239836	18	CP029023.1	160516-160533	2	0.889
CP029023_2	2.5\|239819\|18\|CP029023\|CRISPRCasFinder	239819-239836	18	CP029023.1	189511-189528	2	0.889
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	174203-174218	3	0.812
CP029023_1	1.4\|99642\|17\|CP029023\|CRISPRCasFinder	99642-99658	17	CP029023.1	83323-83339	3	0.824
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	74858-74873	4	0.75
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	165669-165684	4	0.75
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	177427-177442	4	0.75
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	3467-3482	5	0.688
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	103935-103950	5	0.688
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	221771-221786	5	0.688
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	252218-252233	5	0.688
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	40640-40655	5	0.688
CP029023_1	1.4\|99642\|17\|CP029023\|CRISPRCasFinder	99642-99658	17	CP029023.1	186110-186126	5	0.706
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	1845-1860	6	0.625
CP029023_1	1.2\|99562\|16\|CP029023\|CRISPRCasFinder	99562-99577	16	CP029023.1	74856-74871	6	0.625
CP029023_1	1.4\|99642\|17\|CP029023\|CRISPRCasFinder	99642-99658	17	CP029023.1	23988-24004	6	0.647

1. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 56940-56955, mismatch: 0, identity: 1.0

atatattatatatata	CRISPR spacer
atatattatatatata	Protospacer
****************

2. spacer 1.4|99642|17|CP029023|CRISPRCasFinder matches to position: 99688-99704, mismatch: 0, identity: 1.0

tttaaattaaattaaat	CRISPR spacer
tttaaattaaattaaat	Protospacer
*****************

3. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 74848-74863, mismatch: 1, identity: 0.938

atatattatatatata	CRISPR spacer
atatatgatatatata	Protospacer
****** *********

4. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 136457-136472, mismatch: 1, identity: 0.938

atatattatatatata	CRISPR spacer
atatattaaatatata	Protospacer
******** *******

5. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 178159-178174, mismatch: 1, identity: 0.938

atatattatatatata	CRISPR spacer
atatattataaatata	Protospacer
********** *****

6. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 243306-243321, mismatch: 1, identity: 0.938

atatattatatatata	CRISPR spacer
atatattttatatata	Protospacer
******* ********

7. spacer 1.3|99602|16|CP029023|CRISPRCasFinder matches to position: 52747-52762, mismatch: 1, identity: 0.938

ttcaattataatttaa	CRISPR spacer
tttaattataatttaa	Protospacer
**.*************

8. spacer 1.3|99602|16|CP029023|CRISPRCasFinder matches to position: 135165-135180, mismatch: 1, identity: 0.938

ttcaattataatttaa	CRISPR spacer
ttcaattataatataa	Protospacer
************ ***

9. spacer 1.3|99602|16|CP029023|CRISPRCasFinder matches to position: 248151-248166, mismatch: 1, identity: 0.938

ttcaattataatttaa	CRISPR spacer
tttaattataatttaa	Protospacer
**.*************

10. spacer 1.3|99602|16|CP029023|CRISPRCasFinder matches to position: 52747-52762, mismatch: 1, identity: 0.938

ttcaattataatttaa	CRISPR spacer
tttaattataatttaa	Protospacer
**.*************

11. spacer 1.3|99602|16|CP029023|CRISPRCasFinder matches to position: 248151-248166, mismatch: 1, identity: 0.938

ttcaattataatttaa	CRISPR spacer
tttaattataatttaa	Protospacer
**.*************

12. spacer 1.4|99642|17|CP029023|CRISPRCasFinder matches to position: 41095-41111, mismatch: 1, identity: 0.941

tttaaattaaattaaat	CRISPR spacer
tttagattaaattaaat	Protospacer
****.************

13. spacer 2.5|239819|18|CP029023|CRISPRCasFinder matches to position: 117028-117045, mismatch: 1, identity: 0.944

atattttaattattttaa	CRISPR spacer
atattttatttattttaa	Protospacer
******** *********

14. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 1839-1854, mismatch: 2, identity: 0.875

atatattatatatata	CRISPR spacer
attttttatatatata	Protospacer
** * ***********

15. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 21734-21749, mismatch: 2, identity: 0.875

atatattatatatata--	CRISPR spacer
--atattatatatatata	Protospacer
  **************

16. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 74850-74865, mismatch: 2, identity: 0.875

atatattatatatata	CRISPR spacer
atatgatatatatata	Protospacer
****. **********

17. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 80764-80779, mismatch: 2, identity: 0.875

atatattatatatata	CRISPR spacer
atatcttctatatata	Protospacer
**** ** ********

18. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 86536-86551, mismatch: 2, identity: 0.875

atatattatatatata	CRISPR spacer
atatattagataaata	Protospacer
******** *** ***

19. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 103704-103719, mismatch: 2, identity: 0.875

atatattatatatata	CRISPR spacer
atatattattaatata	Protospacer
*********  *****

20. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 135415-135430, mismatch: 2, identity: 0.875

atatattatatatata	CRISPR spacer
atatattatttacata	Protospacer
********* **.***

21. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 156156-156171, mismatch: 2, identity: 0.875

atatattatatatata	CRISPR spacer
atattttttatatata	Protospacer
**** ** ********

22. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 156158-156173, mismatch: 2, identity: 0.875

atatattatatatata	CRISPR spacer
atatattttttatata	Protospacer
******* * ******

23. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 167416-167431, mismatch: 2, identity: 0.875

atatattatatatata	CRISPR spacer
atatattatacttata	Protospacer
**********. ****

24. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 169273-169288, mismatch: 2, identity: 0.875

atatattatatatata	CRISPR spacer
atatgttatataaata	Protospacer
****.******* ***

25. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 174204-174219, mismatch: 2, identity: 0.875

--atatattatatatata	CRISPR spacer
atatatattatatata--	Protospacer
  **************

26. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 182384-182399, mismatch: 2, identity: 0.875

atatattatatatata	CRISPR spacer
atatattacaaatata	Protospacer
********.* *****

27. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 191145-191160, mismatch: 2, identity: 0.875

atatattatatatata	CRISPR spacer
attttttatatatata	Protospacer
** * ***********

28. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 213241-213256, mismatch: 2, identity: 0.875

atatattatatatata	CRISPR spacer
atttattatatctata	Protospacer
** ******** ****

29. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 239508-239523, mismatch: 2, identity: 0.875

-atatattatatatata	CRISPR spacer
tatatattttatatat-	Protospacer
 ******* *******

30. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 243307-243322, mismatch: 2, identity: 0.875

-atatattatatatata	CRISPR spacer
tatatattttatatat-	Protospacer
 ******* *******

31. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 244791-244806, mismatch: 2, identity: 0.875

atatattatatatata	CRISPR spacer
atatattatatgtcta	Protospacer
***********.* **

32. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 247605-247620, mismatch: 2, identity: 0.875

atatattatatatata	CRISPR spacer
atacattatataaata	Protospacer
***.******** ***

33. spacer 1.3|99602|16|CP029023|CRISPRCasFinder matches to position: 6790-6805, mismatch: 2, identity: 0.875

ttcaattataatttaa	CRISPR spacer
ttaaaatataatttaa	Protospacer
** ** **********

34. spacer 1.3|99602|16|CP029023|CRISPRCasFinder matches to position: 6790-6805, mismatch: 2, identity: 0.875

ttcaattataatttaa	CRISPR spacer
ttaaaatataatttaa	Protospacer
** ** **********

35. spacer 1.3|99602|16|CP029023|CRISPRCasFinder matches to position: 70773-70788, mismatch: 2, identity: 0.875

ttcaattataatttaa	CRISPR spacer
ttcagttttaatttaa	Protospacer
****.** ********

36. spacer 1.3|99602|16|CP029023|CRISPRCasFinder matches to position: 106904-106919, mismatch: 2, identity: 0.875

ttcaattataatttaa	CRISPR spacer
ttcatttagaatttaa	Protospacer
**** *** *******

37. spacer 1.3|99602|16|CP029023|CRISPRCasFinder matches to position: 169948-169963, mismatch: 2, identity: 0.875

ttcaattataatttaa	CRISPR spacer
tttaattttaatttaa	Protospacer
**.**** ********

38. spacer 1.3|99602|16|CP029023|CRISPRCasFinder matches to position: 265508-265523, mismatch: 2, identity: 0.875

ttcaattataatttaa	CRISPR spacer
ttaaataataatttaa	Protospacer
** *** *********

39. spacer 1.4|99642|17|CP029023|CRISPRCasFinder matches to position: 19308-19324, mismatch: 2, identity: 0.882

tttaaattaaattaaat	CRISPR spacer
tttaaattaaaatgaat	Protospacer
*********** *.***

40. spacer 1.4|99642|17|CP029023|CRISPRCasFinder matches to position: 23818-23834, mismatch: 2, identity: 0.882

tttaaattaaattaaat	CRISPR spacer
tttaaatgaaattgaat	Protospacer
******* *****.***

41. spacer 1.4|99642|17|CP029023|CRISPRCasFinder matches to position: 38743-38759, mismatch: 2, identity: 0.882

tttaaattaaattaaat	CRISPR spacer
ttttatttaaattaaat	Protospacer
*** * ***********

42. spacer 1.4|99642|17|CP029023|CRISPRCasFinder matches to position: 83324-83340, mismatch: 2, identity: 0.882

tttaaattaaattaaat	CRISPR spacer
tttaaattaattttaat	Protospacer
********** ** ***

43. spacer 1.4|99642|17|CP029023|CRISPRCasFinder matches to position: 99683-99699, mismatch: 2, identity: 0.882

tttaaattaaattaaat	CRISPR spacer
tttattttaaattaaat	Protospacer
****  ***********

44. spacer 1.4|99642|17|CP029023|CRISPRCasFinder matches to position: 101405-101421, mismatch: 2, identity: 0.882

tttaaattaaattaaat	CRISPR spacer
tttaaattcaattcaat	Protospacer
******** **** ***

45. spacer 1.4|99642|17|CP029023|CRISPRCasFinder matches to position: 141881-141897, mismatch: 2, identity: 0.882

tttaaattaaattaaat	CRISPR spacer
tttaaattaaaacaaat	Protospacer
*********** .****

46. spacer 1.4|99642|17|CP029023|CRISPRCasFinder matches to position: 202689-202705, mismatch: 2, identity: 0.882

tttaaattaaattaaat	CRISPR spacer
tttaaattaaaagaaat	Protospacer
***********  ****

47. spacer 1.4|99642|17|CP029023|CRISPRCasFinder matches to position: 221260-221276, mismatch: 2, identity: 0.882

tttaaattaaattaaat	CRISPR spacer
ttaaaattaaatttaat	Protospacer
** ********** ***

48. spacer 1.4|99642|17|CP029023|CRISPRCasFinder matches to position: 250426-250442, mismatch: 2, identity: 0.882

tttaaattaaattaaat	CRISPR spacer
tttaaataaaaataaat	Protospacer
******* *** *****

49. spacer 1.4|99642|17|CP029023|CRISPRCasFinder matches to position: 265180-265196, mismatch: 2, identity: 0.882

tttaaattaaattaaat	CRISPR spacer
tttaaattaaataatat	Protospacer
************ * **

50. spacer 2.2|239675|18|CP029023|CRISPRCasFinder matches to position: 179770-179787, mismatch: 2, identity: 0.889

aaaggctaatttagataa	CRISPR spacer
aaaggataatttagaaaa	Protospacer
***** ********* **

51. spacer 2.5|239819|18|CP029023|CRISPRCasFinder matches to position: 6781-6798, mismatch: 2, identity: 0.889

atattttaattattttaa	CRISPR spacer
atattttaataaatttaa	Protospacer
********** * *****

52. spacer 2.5|239819|18|CP029023|CRISPRCasFinder matches to position: 15279-15296, mismatch: 2, identity: 0.889

atattttaattattttaa	CRISPR spacer
attttttaaatattttaa	Protospacer
** ****** ********

53. spacer 2.5|239819|18|CP029023|CRISPRCasFinder matches to position: 41212-41229, mismatch: 2, identity: 0.889

atattttaattattttaa	CRISPR spacer
atatttaaattatttaaa	Protospacer
****** ******** **

54. spacer 2.5|239819|18|CP029023|CRISPRCasFinder matches to position: 77884-77901, mismatch: 2, identity: 0.889

atattttaattattttaa	CRISPR spacer
attttttaataattttaa	Protospacer
** ******* *******

55. spacer 2.5|239819|18|CP029023|CRISPRCasFinder matches to position: 160516-160533, mismatch: 2, identity: 0.889

atattttaattattttaa	CRISPR spacer
atataataattattttaa	Protospacer
****  ************

56. spacer 2.5|239819|18|CP029023|CRISPRCasFinder matches to position: 189511-189528, mismatch: 2, identity: 0.889

atattttaattattttaa	CRISPR spacer
atatattatttattttaa	Protospacer
**** *** *********

57. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 174203-174218, mismatch: 3, identity: 0.812

---atatattatatatata	CRISPR spacer
tatatatattatatat---	Protospacer
   *************

58. spacer 1.4|99642|17|CP029023|CRISPRCasFinder matches to position: 83323-83339, mismatch: 3, identity: 0.824

-tttaaattaaattaaat	CRISPR spacer
atttaaattaattttaa-	Protospacer
 ********** ** **

59. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 74858-74873, mismatch: 4, identity: 0.75

---atatattatatatata	CRISPR spacer
tatatatatgatatat---	Protospacer
   ****** ******

60. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 165669-165684, mismatch: 4, identity: 0.75

---atatattatatatata	CRISPR spacer
tatatatattatagat---	Protospacer
   ********** **

61. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 177427-177442, mismatch: 4, identity: 0.75

-atatattatatatata	CRISPR spacer
tatatatagcatatat-	Protospacer
 ****** ..******

62. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 3467-3482, mismatch: 5, identity: 0.688

-----atatattatatatata	CRISPR spacer
tatatatatattatat-----	Protospacer
     ***********

63. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 103935-103950, mismatch: 5, identity: 0.688

-----atatattatatatata	CRISPR spacer
tatatatatattatat-----	Protospacer
     ***********

64. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 221771-221786, mismatch: 5, identity: 0.688

-----atatattatatatata	CRISPR spacer
tatatatatattatat-----	Protospacer
     ***********

65. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 252218-252233, mismatch: 5, identity: 0.688

-----atatattatatatata	CRISPR spacer
tatatatatattatat-----	Protospacer
     ***********

66. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 40640-40655, mismatch: 5, identity: 0.688

---atatattatatatata	CRISPR spacer
tatatatatcatttat---	Protospacer
   ******.** ***

67. spacer 1.4|99642|17|CP029023|CRISPRCasFinder matches to position: 186110-186126, mismatch: 5, identity: 0.706

-tttaaattaaattaaat	CRISPR spacer
attttattaaatttaaa-	Protospacer
 *** * * ** *****

68. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 1845-1860, mismatch: 6, identity: 0.625

atatattatatatata------	CRISPR spacer
------tatatatatattaaat	Protospacer
      **********

69. spacer 1.2|99562|16|CP029023|CRISPRCasFinder matches to position: 74856-74871, mismatch: 6, identity: 0.625

atatattatatatata------	CRISPR spacer
------tatatatatatgatat	Protospacer
      **********

70. spacer 1.4|99642|17|CP029023|CRISPRCasFinder matches to position: 23988-24004, mismatch: 6, identity: 0.647

tttaaattaaattaaat-----	CRISPR spacer
-----attaaatttaatataaa	Protospacer
     ******** ***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029023_1	1.1\|99511\|27\|CP029023\|CRISPRCasFinder	99511-99537	27	MN694706	Marine virus AFVG_250M574, complete genome	30764-30790	4	0.852
CP029023_1	1.1\|99511\|27\|CP029023\|CRISPRCasFinder	99511-99537	27	NZ_CP053901	Proteus mirabilis strain YPM35 plasmid pJPM35-3, complete sequence	726-752	5	0.815
CP029023_1	1.1\|99511\|27\|CP029023\|CRISPRCasFinder	99511-99537	27	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	225655-225681	5	0.815
CP029023_1	1.1\|99511\|27\|CP029023\|CRISPRCasFinder	99511-99537	27	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	161682-161708	5	0.815
CP029023_1	1.1\|99511\|27\|CP029023\|CRISPRCasFinder	99511-99537	27	MH884508	Bacillus phage vB_BcoS-136, complete genome	124965-124991	5	0.815
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	AP014459	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S45-C237, * SEQUENCING IN PROGRESS *, 3 ordered pieces	2381-2410	5	0.833
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	KY065464	Streptococcus phage IPP23, complete genome	14232-14261	5	0.833
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	NZ_MF951102	Weissella cibaria strain W5 plasmid pA010, complete sequence	3765-3794	5	0.833
CP029023_2	2.4\|239765\|27\|CP029023\|CRISPRCasFinder	239765-239791	27	MF001355	Proteus phage PM2, partial genome	4825-4851	5	0.815
CP029023_2	2.4\|239765\|27\|CP029023\|CRISPRCasFinder	239765-239791	27	KP890823	Proteus phage vB_PmiM_Pm5461, complete genome	18497-18523	5	0.815
CP029023_2	2.4\|239765\|27\|CP029023\|CRISPRCasFinder	239765-239791	27	KT264824	Gokushovirus WZ-2015a isolate 76Mky15, complete genome	2480-2506	5	0.815
CP029023_2	2.4\|239765\|27\|CP029023\|CRISPRCasFinder	239765-239791	27	NZ_CP013800	Piscirickettsia salmonis strain AY6532B plasmid p4PS9, complete sequence	6589-6615	5	0.815
CP029023_2	2.4\|239765\|27\|CP029023\|CRISPRCasFinder	239765-239791	27	NZ_CP013819	Piscirickettsia salmonis strain AY3800B plasmid p3PS10, complete sequence	16274-16300	5	0.815
CP029023_2	2.4\|239765\|27\|CP029023\|CRISPRCasFinder	239765-239791	27	NZ_CP013795	Piscirickettsia salmonis strain AY6297B plasmid p4PS8, complete sequence	16274-16300	5	0.815
CP029023_2	2.4\|239765\|27\|CP029023\|CRISPRCasFinder	239765-239791	27	NC_013509	Edwardsiella tarda EIB202 plasmid pEIB202, complete sequence	20935-20961	5	0.815
CP029023_2	2.4\|239765\|27\|CP029023\|CRISPRCasFinder	239765-239791	27	MN694510	Marine virus AFVG_250M493, complete genome	27518-27544	5	0.815
CP029023_2	2.4\|239765\|27\|CP029023\|CRISPRCasFinder	239765-239791	27	KY593455	Yersinia phage fHe-Yen9-01, complete genome	112055-112081	5	0.815
CP029023_2	2.4\|239765\|27\|CP029023\|CRISPRCasFinder	239765-239791	27	NC_019909	Yersinia phage phiR1-RT complete genome	110966-110992	5	0.815
CP029023_2	2.4\|239765\|27\|CP029023\|CRISPRCasFinder	239765-239791	27	NC_028820	Yersinia phage vB_YenM_TG1, complete genome	102550-102576	5	0.815
CP029023_1	1.1\|99511\|27\|CP029023\|CRISPRCasFinder	99511-99537	27	NZ_AP014832	Geminocystis sp. NIES-3709 plasmid pGM3709_11, complete sequence	312-338	6	0.778
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	NC_011247	Borrelia duttonii Ly plasmid pl165, complete sequence	24492-24521	6	0.8
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	NZ_CP038502	Acinetobacter baumannii strain CIAT758 plasmid unnamed2, complete sequence	46573-46602	6	0.8
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	MT375529	Pelagibacter phage Kolga EXVC01, complete genome	8770-8799	6	0.8
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	KY065457	Streptococcus phage IPP16, complete genome	14573-14602	6	0.8
CP029023_2	2.4\|239765\|27\|CP029023\|CRISPRCasFinder	239765-239791	27	NC_022603	Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR64, complete sequence	23486-23512	6	0.778
CP029023_1	1.1\|99511\|27\|CP029023\|CRISPRCasFinder	99511-99537	27	NZ_CP031273	Staphylococcus chromogenes strain 17A plasmid unnamed1	14742-14768	7	0.741
CP029023_1	1.1\|99511\|27\|CP029023\|CRISPRCasFinder	99511-99537	27	MN694696	Marine virus AFVG_250M540, complete genome	65037-65063	7	0.741
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	CP024686	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence	16795-16824	7	0.767
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	MN693184	Marine virus AFVG_25M66, complete genome	37539-37568	7	0.767
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	NZ_CP021282	Legionella pneumophila subsp. pneumophila strain Flint 2 (D-7477) plasmid unnamed, complete sequence	18605-18634	7	0.767
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	NZ_CP016031	Legionella pneumophila strain OLDA plasmid unnamed, complete sequence	38903-38932	7	0.767
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	AP014020	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C109A-MedDCM-OCT-S27-C18, * SEQUENCING IN PROGRESS *	7688-7717	7	0.767
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	AP014021	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C109A-MedDCM-OCT-S44-C26, * SEQUENCING IN PROGRESS *	5527-5556	7	0.767
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	NZ_LT598658	Legionella pneumophila strain Lpm7613 isolate Lpm7613 plasmid 2	49415-49444	7	0.767
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	NZ_LN681226	Legionella hackeliae strain ATCC 35250 plasmid II, complete sequence	8410-8439	7	0.767
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	NZ_CP021287	Legionella pneumophila subsp. pneumophila strain Albuquerque 1 (D-7474) plasmid unnamed, complete sequence	79715-79744	7	0.767
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	NC_006365	Legionella pneumophila str. Paris plasmid pLPP, complete sequence	54945-54974	7	0.767
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	NZ_MG205641	Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence	87564-87593	7	0.767
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	NZ_MG205643	Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence	78674-78703	7	0.767
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	NZ_MG205642	Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence	87564-87593	7	0.767
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	MN693386	Marine virus AFVG_25M538, complete genome	14745-14774	8	0.733
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	MN693115	Marine virus AFVG_25M537, complete genome	20053-20082	8	0.733
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	NZ_CP007231	Yersinia similis strain Y_sim_228 plasmid unnamed, complete sequence	13950-13979	8	0.733
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	118280-118309	9	0.7
CP029023_2	2.1\|239618\|30\|CP029023\|CRISPRCasFinder	239618-239647	30	NZ_CP040855	Lactobacillus johnsonii strain G2A plasmid unnamed1	78427-78456	9	0.7

1. spacer 1.1|99511|27|CP029023|CRISPRCasFinder matches to MN694706 (Marine virus AFVG_250M574, complete genome) position: , mismatch: 4, identity: 0.852

tattagctgataaagttttaaaaaaca	CRISPR spacer
cattaactgataaagttttaaataata	Protospacer
.****.**************** **.*

2. spacer 1.1|99511|27|CP029023|CRISPRCasFinder matches to NZ_CP053901 (Proteus mirabilis strain YPM35 plasmid pJPM35-3, complete sequence) position: , mismatch: 5, identity: 0.815

tattagctgataaagttttaaaaaaca	CRISPR spacer
tattagctggtatagttttaaaattaa	Protospacer
*********.** **********   *

3. spacer 1.1|99511|27|CP029023|CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 5, identity: 0.815

tattagctgataaagttttaaaaaaca	CRISPR spacer
tataccttgataaagttttaaaaaact	Protospacer
***   .*******************

4. spacer 1.1|99511|27|CP029023|CRISPRCasFinder matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 5, identity: 0.815

tattagctgataaagttttaaaaaaca	CRISPR spacer
caaaagatgataaagatttaaaaaaca	Protospacer
.*  ** ******** ***********

5. spacer 1.1|99511|27|CP029023|CRISPRCasFinder matches to MH884508 (Bacillus phage vB_BcoS-136, complete genome) position: , mismatch: 5, identity: 0.815

tattagctgataaagttttaaaaaaca	CRISPR spacer
attcagatgataaagatttaaaaaaca	Protospacer
  *.** ******** ***********

6. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to AP014459 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S45-C237, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces) position: , mismatch: 5, identity: 0.833

agtaattttaaaattaaaacaagattataa	CRISPR spacer
aatgattttaaaattaaatcaaaattatat	Protospacer
*.*.************** ***.******

7. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to KY065464 (Streptococcus phage IPP23, complete genome) position: , mismatch: 5, identity: 0.833

agtaattttaaaattaaaacaagattataa	CRISPR spacer
agctattttaaaattaaaaaaagcttatga	Protospacer
**. *************** *** ****.*

8. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to NZ_MF951102 (Weissella cibaria strain W5 plasmid pA010, complete sequence) position: , mismatch: 5, identity: 0.833

agtaatt--ttaaaattaaaacaagattataa	CRISPR spacer
--tatttgattataattaaaaaaagattataa	Protospacer
  ** **  *** ******** **********

9. spacer 2.4|239765|27|CP029023|CRISPRCasFinder matches to MF001355 (Proteus phage PM2, partial genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
atcatcttctttagaattagaagagtg	Protospacer
 *. ********************.*

10. spacer 2.4|239765|27|CP029023|CRISPRCasFinder matches to KP890823 (Proteus phage vB_PmiM_Pm5461, complete genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
atcatcttctttagaattagaagagtg	Protospacer
 *. ********************.*

11. spacer 2.4|239765|27|CP029023|CRISPRCasFinder matches to KT264824 (Gokushovirus WZ-2015a isolate 76Mky15, complete genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
cttttcttctttagaattaaaaacctg	Protospacer
*******************.**.  *

12. spacer 2.4|239765|27|CP029023|CRISPRCasFinder matches to NZ_CP013800 (Piscirickettsia salmonis strain AY6532B plasmid p4PS9, complete sequence) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
cgtttcttctttagaatcagaaaaacc	Protospacer
* ***************.****.**..

13. spacer 2.4|239765|27|CP029023|CRISPRCasFinder matches to NZ_CP013819 (Piscirickettsia salmonis strain AY3800B plasmid p3PS10, complete sequence) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
cgtttcttctttagaatcagaaaaacc	Protospacer
* ***************.****.**..

14. spacer 2.4|239765|27|CP029023|CRISPRCasFinder matches to NZ_CP013795 (Piscirickettsia salmonis strain AY6297B plasmid p4PS8, complete sequence) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
cgtttcttctttagaatcagaaaaacc	Protospacer
* ***************.****.**..

15. spacer 2.4|239765|27|CP029023|CRISPRCasFinder matches to NC_013509 (Edwardsiella tarda EIB202 plasmid pEIB202, complete sequence) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
cgtttcttctttagaatcagaaaaacc	Protospacer
* ***************.****.**..

16. spacer 2.4|239765|27|CP029023|CRISPRCasFinder matches to MN694510 (Marine virus AFVG_250M493, complete genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
tatttcttctttagaattaaacgaact	Protospacer
. *****************.* ***.*

17. spacer 2.4|239765|27|CP029023|CRISPRCasFinder matches to KY593455 (Yersinia phage fHe-Yen9-01, complete genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
atcttcttctttagaaccagaagaatg	Protospacer
 *.*************..********

18. spacer 2.4|239765|27|CP029023|CRISPRCasFinder matches to NC_019909 (Yersinia phage phiR1-RT complete genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
atcttcttctttagaaccagaagaatg	Protospacer
 *.*************..********

19. spacer 2.4|239765|27|CP029023|CRISPRCasFinder matches to NC_028820 (Yersinia phage vB_YenM_TG1, complete genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
atcttcttctttagaaccagaagaatg	Protospacer
 *.*************..********

20. spacer 1.1|99511|27|CP029023|CRISPRCasFinder matches to NZ_AP014832 (Geminocystis sp. NIES-3709 plasmid pGM3709_11, complete sequence) position: , mismatch: 6, identity: 0.778

tattagctgataaagttttaaaaaaca	CRISPR spacer
aattagctgataaagtcttagaaattg	Protospacer
 ***************.***.*** ..

21. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to NC_011247 (Borrelia duttonii Ly plasmid pl165, complete sequence) position: , mismatch: 6, identity: 0.8

agtaattttaaaattaaaacaagattataa	CRISPR spacer
cttaattttaaaattaaaataatattatct	Protospacer
  *****************.** *****

22. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to NZ_CP038502 (Acinetobacter baumannii strain CIAT758 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

agtaattttaaaattaaaacaagattataa	CRISPR spacer
cataattttaaaattaaaaaaatattttta	Protospacer
 .***************** ** *** * *

23. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to MT375529 (Pelagibacter phage Kolga EXVC01, complete genome) position: , mismatch: 6, identity: 0.8

agtaattttaaaattaaaacaagattataa	CRISPR spacer
tgaatttacaaaattaaaacaagataataa	Protospacer
 * * ** .**************** ****

24. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to KY065457 (Streptococcus phage IPP16, complete genome) position: , mismatch: 6, identity: 0.8

agtaattttaaaattaaaacaagattataa	CRISPR spacer
agctattttaaaattaaaaaaagcttacga	Protospacer
**. *************** *** ***..*

25. spacer 2.4|239765|27|CP029023|CRISPRCasFinder matches to NC_022603 (Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR64, complete sequence) position: , mismatch: 6, identity: 0.778

cttttcttctttagaattagaagaatt	CRISPR spacer
cttttcttctttagaactagattgacc	Protospacer
****************.****  .*..

26. spacer 1.1|99511|27|CP029023|CRISPRCasFinder matches to NZ_CP031273 (Staphylococcus chromogenes strain 17A plasmid unnamed1) position: , mismatch: 7, identity: 0.741

tattagctgataaagttttaaaaaaca	CRISPR spacer
tccaagctgataaagttttaaaagtag	Protospacer
* . *******************.  .

27. spacer 1.1|99511|27|CP029023|CRISPRCasFinder matches to MN694696 (Marine virus AFVG_250M540, complete genome) position: , mismatch: 7, identity: 0.741

tattagctgataaagttttaaaaaaca	CRISPR spacer
atgcagcagataaagttttaaaaaaac	Protospacer
   .*** *****************

28. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to CP024686 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence) position: , mismatch: 7, identity: 0.767

agtaattttaaaattaaaacaagattataa	CRISPR spacer
gttaatttcaaaattaaaacaagagcaata	Protospacer
. ******.*************** .*  *

29. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to MN693184 (Marine virus AFVG_25M66, complete genome) position: , mismatch: 7, identity: 0.767

agtaattttaaaattaaaacaagattataa	CRISPR spacer
aaagtttttaaaattaaatcaaaattatat	Protospacer
*. . ************* ***.******

30. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to NZ_CP021282 (Legionella pneumophila subsp. pneumophila strain Flint 2 (D-7477) plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

agtaattttaaaattaaaacaagattataa	CRISPR spacer
attaatttttaaattaaaccaagataacgt	Protospacer
* ******* ******** ****** *..

31. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to NZ_CP016031 (Legionella pneumophila strain OLDA plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

agtaattttaaaattaaaacaagattataa	CRISPR spacer
attaatttttaaattaaaccaagataacgt	Protospacer
* ******* ******** ****** *..

32. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to AP014020 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C109A-MedDCM-OCT-S27-C18, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

agtaattttaaaattaaaacaagattataa	CRISPR spacer
aggaactttaaaattaaaacaaggagaaga	Protospacer
** **.*****************.  * .*

33. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to AP014021 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C109A-MedDCM-OCT-S44-C26, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

agtaattttaaaattaaaacaagattataa	CRISPR spacer
aggaactttaaaattaaaacaaggagaaga	Protospacer
** **.*****************.  * .*

34. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to NZ_LT598658 (Legionella pneumophila strain Lpm7613 isolate Lpm7613 plasmid 2) position: , mismatch: 7, identity: 0.767

agtaattttaaaattaaaacaagattataa	CRISPR spacer
attaatttttaaattaaaccaagataacgt	Protospacer
* ******* ******** ****** *..

35. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to NZ_LN681226 (Legionella hackeliae strain ATCC 35250 plasmid II, complete sequence) position: , mismatch: 7, identity: 0.767

agtaattttaaaattaaaacaagattataa	CRISPR spacer
attaatttttaaattaaaccaagataacgt	Protospacer
* ******* ******** ****** *..

36. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to NZ_CP021287 (Legionella pneumophila subsp. pneumophila strain Albuquerque 1 (D-7474) plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

agtaattttaaaattaaaacaagattataa	CRISPR spacer
attaatttttaaattaaaccaagataacgt	Protospacer
* ******* ******** ****** *..

37. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to NC_006365 (Legionella pneumophila str. Paris plasmid pLPP, complete sequence) position: , mismatch: 7, identity: 0.767

agtaattttaaaattaaaacaagattataa	CRISPR spacer
attaatttttaaattaaaccaagataacgt	Protospacer
* ******* ******** ****** *..

38. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to NZ_MG205641 (Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence) position: , mismatch: 7, identity: 0.767

agtaattttaaaattaaaacaagattataa	CRISPR spacer
aaaaattttaaaattaaaagaagaaggcaa	Protospacer
*. **************** ****  ..**

39. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to NZ_MG205643 (Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence) position: , mismatch: 7, identity: 0.767

agtaattttaaaattaaaacaagattataa	CRISPR spacer
aaaaattttaaaattaaaagaagagggcaa	Protospacer
*. **************** ****  ..**

40. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to NZ_MG205642 (Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence) position: , mismatch: 7, identity: 0.767

agtaattttaaaattaaaacaagattataa	CRISPR spacer
aaaaattttaaaattaaaagaagaaggcaa	Protospacer
*. **************** ****  ..**

41. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to MN693386 (Marine virus AFVG_25M538, complete genome) position: , mismatch: 8, identity: 0.733

agtaattttaaaattaaaacaagattataa	CRISPR spacer
gttaattttaaaattaaatctagatggttt	Protospacer
. **************** * **** .*

42. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to MN693115 (Marine virus AFVG_25M537, complete genome) position: , mismatch: 8, identity: 0.733

agtaattttaaaattaaaacaagattataa	CRISPR spacer
gttaattttaaaattaaatctagatggttt	Protospacer
. **************** * **** .*

43. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to NZ_CP007231 (Yersinia similis strain Y_sim_228 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

agtaattttaaaattaaaacaagattataa	CRISPR spacer
tatcattttaatattaaaacaatattaatt	Protospacer
 .* ******* ********** ****

44. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 9, identity: 0.7

agtaattttaaaattaaaacaagattataa	CRISPR spacer
caaggttttaaaaataaaacaagatcattt	Protospacer
 . ..******** ***********.**

45. spacer 2.1|239618|30|CP029023|CRISPRCasFinder matches to NZ_CP040855 (Lactobacillus johnsonii strain G2A plasmid unnamed1) position: , mismatch: 9, identity: 0.7

agtaattttaaaattaaaacaagattataa	CRISPR spacer
ttttgttttaaaattaaaaaaagattcagt	Protospacer
  * .************** ******  .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029023

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection