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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP021171 Staphylococcus aureus strain CHU15-056 chromosome, complete genome 7 crisprs cas3,DEDDh,DinG,csa3,RT,WYL 6 0 9 0

Results visualization

1. CP021171
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021171_1 154921-155005 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021171_2 394707-394808 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021171_3 784004-784082 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021171_4 833116-833197 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021171_5 1133941-1134026 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021171_6 2041828-2041909 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP021171_7 2171109-2171189 Orphan NA
1 spacers
csa3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP021171_1 1.1|154947|33|CP021171|CRISPRCasFinder 154947-154979 33 CP021171.1 1345494-1345526 0 1.0
CP021171_5 5.1|1133971|26|CP021171|CRISPRCasFinder 1133971-1133996 26 CP021171.1 796884-796909 0 1.0
CP021171_5 5.1|1133971|26|CP021171|CRISPRCasFinder 1133971-1133996 26 CP021171.1 796940-796965 0 1.0
CP021171_6 6.1|2041852|34|CP021171|CRISPRCasFinder 2041852-2041885 34 CP021171.1 784003-784036 0 1.0
CP021171_3 3.1|784028|31|CP021171|CRISPRCasFinder 784028-784058 31 CP021171.1 278118-278148 1 0.968
CP021171_4 4.1|833140|34|CP021171|CRISPRCasFinder 833140-833173 34 CP021171.1 1345493-1345526 1 0.971
CP021171_6 6.1|2041852|34|CP021171|CRISPRCasFinder 2041852-2041885 34 CP021171.1 1133752-1133785 1 0.971
CP021171_6 6.1|2041852|34|CP021171|CRISPRCasFinder 2041852-2041885 34 CP021171.1 1737239-1737272 1 0.971
CP021171_8 8.1|2290876|31|CP021171|CRISPRCasFinder 2290876-2290906 31 CP021171.1 796806-796836 1 0.968
CP021171_1 1.1|154947|33|CP021171|CRISPRCasFinder 154947-154979 33 CP021171.1 789562-789594 2 0.939
CP021171_1 1.1|154947|33|CP021171|CRISPRCasFinder 154947-154979 33 CP021171.1 789621-789653 2 0.939
CP021171_1 1.1|154947|33|CP021171|CRISPRCasFinder 154947-154979 33 CP021171.1 1433841-1433873 2 0.939
CP021171_3 3.1|784028|31|CP021171|CRISPRCasFinder 784028-784058 31 CP021171.1 278063-278093 2 0.935
CP021171_6 6.1|2041852|34|CP021171|CRISPRCasFinder 2041852-2041885 34 CP021171.1 1349867-1349900 2 0.941
CP021171_6 6.1|2041852|34|CP021171|CRISPRCasFinder 2041852-2041885 34 CP021171.1 2732756-2732789 2 0.941
CP021171_8 8.1|2290876|31|CP021171|CRISPRCasFinder 2290876-2290906 31 CP021171.1 56435-56465 2 0.935
CP021171_8 8.1|2290876|31|CP021171|CRISPRCasFinder 2290876-2290906 31 CP021171.1 354450-354480 2 0.935
CP021171_8 8.1|2290876|31|CP021171|CRISPRCasFinder 2290876-2290906 31 CP021171.1 617708-617738 2 0.935
CP021171_8 8.1|2290876|31|CP021171|CRISPRCasFinder 2290876-2290906 31 CP021171.1 797030-797060 2 0.935
CP021171_8 8.1|2290876|31|CP021171|CRISPRCasFinder 2290876-2290906 31 CP021171.1 1036747-1036777 2 0.935
CP021171_8 8.1|2290876|31|CP021171|CRISPRCasFinder 2290876-2290906 31 CP021171.1 1139353-1139383 2 0.935
CP021171_8 8.1|2290876|31|CP021171|CRISPRCasFinder 2290876-2290906 31 CP021171.1 1345452-1345482 2 0.935
CP021171_8 8.1|2290876|31|CP021171|CRISPRCasFinder 2290876-2290906 31 CP021171.1 1433885-1433915 2 0.935
CP021171_8 8.1|2290876|31|CP021171|CRISPRCasFinder 2290876-2290906 31 CP021171.1 1630008-1630038 2 0.935
CP021171_8 8.1|2290876|31|CP021171|CRISPRCasFinder 2290876-2290906 31 CP021171.1 2280075-2280105 2 0.935
CP021171_8 8.1|2290876|31|CP021171|CRISPRCasFinder 2290876-2290906 31 CP021171.1 2457108-2457138 2 0.935

1. spacer 1.1|154947|33|CP021171|CRISPRCasFinder matches to position: 1345494-1345526, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

2. spacer 5.1|1133971|26|CP021171|CRISPRCasFinder matches to position: 796884-796909, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgc	CRISPR spacer
cggggccccaacatagaagctggcgc	Protospacer
**************************

3. spacer 5.1|1133971|26|CP021171|CRISPRCasFinder matches to position: 796940-796965, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgc	CRISPR spacer
cggggccccaacatagaagctggcgc	Protospacer
**************************

4. spacer 6.1|2041852|34|CP021171|CRISPRCasFinder matches to position: 784003-784036, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

5. spacer 3.1|784028|31|CP021171|CRISPRCasFinder matches to position: 278118-278148, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgtattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattgcc	Protospacer
************************.******

6. spacer 4.1|833140|34|CP021171|CRISPRCasFinder matches to position: 1345493-1345526, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

7. spacer 6.1|2041852|34|CP021171|CRISPRCasFinder matches to position: 1133752-1133785, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatatcttttcgaaattctctgtgttgg	Protospacer
********* ************************

8. spacer 6.1|2041852|34|CP021171|CRISPRCasFinder matches to position: 1737239-1737272, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

9. spacer 8.1|2290876|31|CP021171|CRISPRCasFinder matches to position: 796806-796836, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

10. spacer 1.1|154947|33|CP021171|CRISPRCasFinder matches to position: 789562-789594, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacacagagaaattggatttccaat	Protospacer
************ **************.*****

11. spacer 1.1|154947|33|CP021171|CRISPRCasFinder matches to position: 789621-789653, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacacagagaaattggatttccaat	Protospacer
************ **************.*****

12. spacer 1.1|154947|33|CP021171|CRISPRCasFinder matches to position: 1433841-1433873, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tggaccccaacaaagagaaattgtattcccaat	Protospacer
***.******************* *********

13. spacer 3.1|784028|31|CP021171|CRISPRCasFinder matches to position: 278063-278093, mismatch: 2, identity: 0.935

ctgtgttggggccccgccaacttgtattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattacc	Protospacer
************************.***.**

14. spacer 6.1|2041852|34|CP021171|CRISPRCasFinder matches to position: 1349867-1349900, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

15. spacer 6.1|2041852|34|CP021171|CRISPRCasFinder matches to position: 2732756-2732789, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

16. spacer 8.1|2290876|31|CP021171|CRISPRCasFinder matches to position: 56435-56465, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

17. spacer 8.1|2290876|31|CP021171|CRISPRCasFinder matches to position: 354450-354480, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

18. spacer 8.1|2290876|31|CP021171|CRISPRCasFinder matches to position: 617708-617738, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

19. spacer 8.1|2290876|31|CP021171|CRISPRCasFinder matches to position: 797030-797060, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

20. spacer 8.1|2290876|31|CP021171|CRISPRCasFinder matches to position: 1036747-1036777, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

21. spacer 8.1|2290876|31|CP021171|CRISPRCasFinder matches to position: 1139353-1139383, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

22. spacer 8.1|2290876|31|CP021171|CRISPRCasFinder matches to position: 1345452-1345482, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

23. spacer 8.1|2290876|31|CP021171|CRISPRCasFinder matches to position: 1433885-1433915, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

24. spacer 8.1|2290876|31|CP021171|CRISPRCasFinder matches to position: 1630008-1630038, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

25. spacer 8.1|2290876|31|CP021171|CRISPRCasFinder matches to position: 2280075-2280105, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

26. spacer 8.1|2290876|31|CP021171|CRISPRCasFinder matches to position: 2457108-2457138, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 721239 : 729060 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 741031 : 755616 18 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 841519 : 891880 66 Staphylococcus_phage(69.81%) terminase,head,portal,tail,capsid,transposase,holin NA
DBSCAN-SWA_4 966206 : 1019330 55 Streptococcus_phage(28.57%) protease,tRNA,bacteriocin,holin NA
DBSCAN-SWA_5 1038275 : 1046730 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1665011 : 1674054 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_7 1800760 : 1862502 57 Staphylococcus_phage(95.56%) protease,tRNA NA
DBSCAN-SWA_8 1868703 : 1872950 6 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_9 1996481 : 2046941 68 Staphylococcus_phage(90.48%) terminase,head,portal,tail,protease,capsid,holin,integrase attL 2016237:2016254|attR 2037932:2037949
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage