CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029659	Staphylococcus aureus strain AR_0467 plasmid unnamed1, complete sequence	0 crisprs	csa3	0	0	0	0
CP029658	Staphylococcus aureus strain AR_0467 chromosome, complete genome	8 crisprs	RT,csa3,DEDDh,cas3,DinG	7	2	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029658_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029658_2

453758-453836

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029658_2

>merge|CP029658|2|453758-453836|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACACAGTAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGAGCCCCAACA

>CP029658|2|1|453758-453836|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACA	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG
TGCAAGTTGGCGGAGCCCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
CP029658.1\|AWQ92555.1\|452811_453198_+\|gtrA-like-family-protein	unknown	unknown	gnl\|CDD\|225155
CP029658.1\|AWQ90216.1\|464451_465399_-\|gamma-hemolysin-component-C	unknown	unknown	gnl\|CDD\|369625
CP029658.1\|AWQ91573.1\|458115_458802_+\|dethiobiotin-synthase	unknown	unknown	gnl\|CDD\|223210
CP029658.1\|AWQ90765.1\|451401_452544_-\|glycerate-kinase-family-protein	unknown	unknown	gnl\|CDD\|272872
CP029658.1\|AWQ91380.1\|447924_448581_-\|peptidase-C39-family-protein	unknown	unknown	gnl\|CDD\|227323
CP029658.1\|AWQ90890.1\|443144_445184_-\|sodium/hydrogen-exchanger-family-protein	unknown	unknown	gnl\|CDD\|223104
CP029658.1\|AWQ90994.1\|463472_464450_-\|gamma-hemolysin-component-B	unknown	unknown	gnl\|CDD\|273388
CP029658.1\|AWQ91441.1\|462953_463421_+\|queT-transporter-family-protein	unknown	unknown	gnl\|CDD\|377623
CP029658.1\|AWQ92020.1\|448693_449167_+\|gyrI-like-small-molecule-binding-domain-protein	unknown	unknown	gnl\|CDD\|226231
CP029658.1\|AWQ90485.1\|450682_451342_-\|putative-membrane-protein	unknown	unknown	unknown
CP029658.1\|AWQ91257.1\|461127_462240_+\|aminotransferase-class-V-family-protein	unknown	unknown	gnl\|CDD\|223234
CP029658.1\|AWQ90341.1\|441174_443004_+\|amino-acid-permease-family-protein	unknown	unknown	gnl\|CDD\|372624
CP029658.1\|AWQ91957.1\|460139_461147_+\|biotin-synthase	unknown	unknown	gnl\|CDD\|235755
CP029658.1\|AWQ90746.1\|458779_460138_+\|adenosylmethionine-8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|273109
CP029658.1\|AWQ92860.1\|449289_450501_-\|drug-resistance-transporter,-Bcr/CflA-subfamily-protein	unknown	unknown	gnl\|CDD\|340878
CP029658.1\|AWQ91173.1\|454141_455905_+\|ABC-transporter-transmembrane-region-family-protein	unknown	unknown	gnl\|CDD\|224055
CP029658.1\|AWQ91680.1\|447055_447862_+\|phosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|163441
CP029658.1\|AWQ90797.1\|456001_457663_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224055
CP029658.1\|AWQ92147.1\|445456_446770_-\|amino-acid-permease-family-protein	unknown	unknown	gnl\|CDD\|224038
CP029658.1\|AWQ92214.1\|462250_462943_+\|6-carboxyhexanoate--CoA-ligase-family-protein	unknown	unknown	gnl\|CDD\|224342

Protein	Function_ID	Function_description	E-value
CP029658.1\|AWQ92555.1\|452811_453198_+\|gtrA-like-family-protein	gnl\|CDD\|225155	COG2246, COG2246, Predicted membrane protein [Function unknown].	1.41026e-22
CP029658.1\|AWQ90216.1\|464451_465399_-\|gamma-hemolysin-component-C	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	2.54865e-93
CP029658.1\|AWQ91573.1\|458115_458802_+\|dethiobiotin-synthase	gnl\|CDD\|223210	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism].	6.55734e-71
CP029658.1\|AWQ90765.1\|451401_452544_-\|glycerate-kinase-family-protein	gnl\|CDD\|272872	TIGR00045, Glycerate_kinase, glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation. [Energy metabolism, Other].	0
CP029658.1\|AWQ91380.1\|447924_448581_-\|peptidase-C39-family-protein	gnl\|CDD\|227323	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown].	2.51069e-72
CP029658.1\|AWQ90890.1\|443144_445184_-\|sodium/hydrogen-exchanger-family-protein	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	4.08489e-101
CP029658.1\|AWQ90994.1\|463472_464450_-\|gamma-hemolysin-component-B	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	5.50766e-128
CP029658.1\|AWQ91441.1\|462953_463421_+\|queT-transporter-family-protein	gnl\|CDD\|377623	pfam06177, QueT, QueT transporter. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes, suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.	0.000832124
CP029658.1\|AWQ92020.1\|448693_449167_+\|gyrI-like-small-molecule-binding-domain-protein	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	4.53378e-38
CP029658.1\|AWQ91257.1\|461127_462240_+\|aminotransferase-class-V-family-protein	gnl\|CDD\|223234	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism].	3.40888e-139
CP029658.1\|AWQ90341.1\|441174_443004_+\|amino-acid-permease-family-protein	gnl\|CDD\|372624	pfam13520, AA_permease_2, Amino acid permease.	2.50522e-32
CP029658.1\|AWQ91957.1\|460139_461147_+\|biotin-synthase	gnl\|CDD\|235755	PRK06256, PRK06256, biotin synthase; Validated.	0
CP029658.1\|AWQ90746.1\|458779_460138_+\|adenosylmethionine-8-amino-7-oxononanoate-transaminase	gnl\|CDD\|273109	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	0
CP029658.1\|AWQ92860.1\|449289_450501_-\|drug-resistance-transporter,-Bcr/CflA-subfamily-protein	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.81144e-73
CP029658.1\|AWQ91173.1\|454141_455905_+\|ABC-transporter-transmembrane-region-family-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.20525e-146
CP029658.1\|AWQ91680.1\|447055_447862_+\|phosphoesterase-family-protein	gnl\|CDD\|163441	TIGR03729, acc_ester, putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.	4.17484e-107
CP029658.1\|AWQ90797.1\|456001_457663_+\|ABC-transporter-family-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.72138e-141
CP029658.1\|AWQ92147.1\|445456_446770_-\|amino-acid-permease-family-protein	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
CP029658.1\|AWQ92214.1\|462250_462943_+\|6-carboxyhexanoate--CoA-ligase-family-protein	gnl\|CDD\|224342	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism].	1.03044e-132

>CP029658.1|AWQ92555.1|452811_453198_+|gtrA-like-family-protein
MKLTQTHAEILKFIIVGGINTLNYYVVYLLLLKLLHIEYMISHITGFLVAFVISYYLNCYFVYRVKPTWRKFISFPITQIVNVSLQTVLLYVFVSWLNLPAEIAPFAGLVITIPITFVLSKWILKDSN
>CP029658.1|AWQ90765.1|451401_452544_-|glycerate-kinase-family-protein
MQLQKIVIAPDSFKESMTAQQVGNIIKQAFTNVYGNTLHYDIIPMADGGEGTTDALMHATGATKYTVIVNDPLMRPIEACYARADEQQIAIIEMAAASGLDLLEKEERNPLYTSSYGTGELIKDALNHGAKTIILGIGGSATNDGGTGMLSALGVKFTDVNGDLLQMNGANLAHIAQIDITNLDSRLKEVTFKVACDVSNPLLGENGATYIYGPQKGADAKMIPKLDFAMSHYHDKIKMCTGKSVNQIPGSGAAGGMGAALLAFCETTLTKGIDVVFDITDFHQRIKDADLVITGEGRMDYQTIFGKTPVGVALAAKQYHIPVIAICGSLGENYQHVYDFGIDSAYSIISSPSTLEDVLQNSEQNLLNTATDIARILKLQ
>CP029658.1|AWQ90485.1|450682_451342_-|putative-membrane-protein
MKRTDKYRDSYQYDNQNQNHRRQSEDASYRQQYAKGDPEEHPERYYNGRDYRREQILEEENEKSRRSKKWLYIIIAILLIIVAIFVTRALLNNDSDKVSNDPKVSQNYKKQVENQDGQINQQVDNAKENIKNNQKTDDIIKNLQNQIDNLKQQEQNKADSKLTQFYQDQINKLTEANNALKNNASQGKIESMLNDINTKFDSIKSKLESLFKDDNGGAN
>CP029658.1|AWQ92860.1|449289_450501_-|drug-resistance-transporter,-Bcr/CflA-subfamily-protein
MQSTKTKTKHFSFLLLITLGVMTAFGPLTIDMYVPSLPKVQGDFGSTTSEIQLTLSFTMIGLALGQFIFGPLSDAFGRKRIAVSILIIFILVSGLSMFVDQLPLFLTLRFIQGLTGGGVIVIAKASAGDKFSGNALAKFLASLMVVNGIITILAPLAGGLALSVATWRSIFTILTIVALIILIGVASQLPKTSKDELKQVNFSSVIKDFGSLLKKPAFIIPMLLQGLTYVMLFSYSSASPFITQKLYNMTPQQFSIMFAVNGVGLIIVSQVVALLVEKLHRHILLIILTIIQVVGVALIILTLTFHLPLWVLLIAFFLNVCPVTSIGPLGFTMAMEERTGGSGNASSLLGLFQFILGGAVAPLVGLKGEFNTSPYMIIIFITAILLVSLQIIYFKMIKKQHVA
>CP029658.1|AWQ92020.1|448693_449167_+|gyrI-like-small-molecule-binding-domain-protein
MEYQLQQLASLTLVGIKETYENGRQAQQHIAGFWQRCYQEGVIADLQLKNNGDLAGILGLCIPELDGKMSYMIAVTGDNSADIAKYDVITLASSKYMVFEAQGAVPKAVQQKMEEVHHYIHQYQANTVKSAPFFELYQDGDTTSEKYITEIWMPVKG
>CP029658.1|AWQ91380.1|447924_448581_-|peptidase-C39-family-protein
MNRKILPVKPISQLFPIPMVMGCEGVSAAMMLQYNNQHIPATEIMRHWPTHPNNPHKGYVGHHLFIKLGNYHQTIFPEAYVPFLQKYNPNIVDGTGKSLEDLKGIIDQGQPVLIYHTNLGSKPLLRVFRFDNKPAKQVSNIHVTLLIGYDDYYYYYIDPLWSHIRRGLVLPAIIPNRKQIIKIRKEKMEYSFNSPGRKCIYVQPHSYTIENQQQNKHT
>CP029658.1|AWQ91680.1|447055_447862_+|phosphoesterase-family-protein
MKIGTIADLHIDRHNKKTSEDYLEALVEIVKYKKLDILLIAGDISNHYQLTHQFITQLTKQLDIPVKFVPGNHDLWEVESMTTQDIWNNYKSMSQCLVGKPFIVNEEWAIIGHTGWYDYSFAAQRFSLEHLQKGKHYGATWQDKERISWGISDQNLSKIAAEQVKKDILEVGNRRVILVTHVVTHPDFIVPMPHRIFDFYNAFIGTSDFNPLYAMFDIPYSIMGHVHFRKSVMDDGRCYLCPCLGYPRQWRSEDIYQEINETIQIIEI
>CP029658.1|AWQ92147.1|445456_446770_-|amino-acid-permease-family-protein
MARKLHRELNNRHIQLIAIGGAIGTGLFLGSGQTISLTGPSLLFTYMIIGVVLFAFMRALGELLLSNTRFNSFVDIANEYLGPFGGFVIGWTYWLCWIVSSMSDLTAMGQYFAFWYPQVPNWITVLFIVLILISFNLLGARLFGELEFWFSIIKVVTIIAMVIVGLVLIFFSFKTHYGHASFTNLISHGGMFPGGTFGFLMSFQIAVYSFIGIELIGVTAGETKDPEKTLPKAINNVPIRILLFYIGGLLVIMSVIPWNDIDPNSSPFVKLFTLIGVPFAAGVVNFVVLTAAASATNSGIYSNSRILFGLSQQGLGPKVLNKTNSHGVPYLSILVSSIALLIAALLNYIFPNAIQLFIYVTTLSTVLFLVVWAMIIVAYLMYLKKHPEAHKNSKFKLIGGKPIAYIILAFFFFVFILLFFSDETRAAIYISPFWFIF
>CP029658.1|AWQ90890.1|443144_445184_-|sodium/hydrogen-exchanger-family-protein
MIISSVINNRFPQIPTAFIQIALGVVIFIIPIQVDFQFNSEVFMFAVIAPLLFVEGTHVSRTKLLEYRKPILLMSMALVFATVVGVGYFIHWIWPALPMPAAFAIAAILCPTDAVAVSAITRGKLLPKGSMTILEGESLLNDAAGIISFKIAVTALVTGTFSLFQAVEQFIISTILGVLIGAIIGFVVVRIRIDLTANKGLKDNNTLTFIQLLTPFVVYFLAEEVHASGIIAVVIAGLIHGLERDRLIRAQTELQMNYHQIWNTFSYALNGFVFVVLGFMIPTVVIDIFQTEPDNFSFLIVITILIAIAIYACRFVWVYFWYKDFYFPKNIQSYLDEEHDSHETPPSRVRYAFIMTMCGIHGTISLSMALTLPFIITKGQAFEYRNDLLFIASFMVLISLILAQIVLPLITPSAEDTTFKGMTYQSAKIFIVQKVIQHFKNESKKDKNDTNYRPVLNQYYGELLFLLNSEPNNQNTKELKRLEDIAKVIETSTLERLIDKGKATYQDINNYRNIVELTETHRTASFVEKFANFFKMLWLRLKAMKHYKALNKESKKQEFENSFKDVQKIMRIVNHNIILRLKEEQNSTNVLEVSLVINHYYDMSRSLKWRAQRRKERQENSNQIIPQAMFHNHKLEALYLQRHLLDELIRKNKINNIVAAQIRENINYNEIVLSLQSKH
>CP029658.1|AWQ90341.1|441174_443004_+|amino-acid-permease-family-protein
MFNQFKRLIIGQPKKNRELKDEKISKFKGLAILSSDALSSVAYGPEQILITLSVVGAVATWYTLPIAGAVLILLAALIMSYRQIIYAYPKGGGAYMVSKTNLGEKWGLLAGGSLLVDYILTVAVSISSGADAFVAAFPSLYGHKVLIACLLVLFILILNLRGLTESATVLSYPVYLFIIGLVILIFIGTFRVATGDIQPHMHASVGTAVPGVTLFLLLKAFSSGASSLTGVEAISNAVTNFREPSANNAVKTLIAMGSILAFLLVGIVGLAYVYGIMPQTETTVLSQLAMQIFGDNAAFYFVQATTVMILVLAANTGFTAFPMLAASMSKDKYMPRMFTVRGDRLGYSNSIIILGVLAIILIIVFDGMTEDLIPLYAVGVFIPFTLAQFGMVIKWIHERPKNWLSKLSVNLLGGIVTFIVFMILLITKFSQVWPILIFLPFVVIFFLKINKHYRDIAEQLRSDIDVLNVDVVDRNLAIVPITSITTAVDKSIYYAQMLANNDVIAVHVSFGDEDEKAFQEKWKRHFPDVRLVILHSEYRSIIRPISRFIDKINRKANDQNYMITVVIPEFITKKRWHNLLHNQTSLRMKLYLIYQKNVNVCTIPFKLKK
>CP029658.1|AWQ91173.1|454141_455905_+|ABC-transporter-transmembrane-region-family-protein
MNNQTNWIKILSGFASDSKWKIMLSILLSIISVFSGLVPYWAVFKIILMMINNAYTINSIMVYIFIALITYISQVCCFGASTMLSHITAYEILSEIRKKLAQKLMRLPLGVVESKKIGELKNIFVDKVETIELPLAHMIPEVIGNLLLSAAIFLYIMLIDWRMASALLVTIPISIFAFKKVMSGFNETYAEQMKSNNYMNSAIVEFIEGIEVIKTFNQSQSSYKKYKDAVDNYKIHTLNWFKNTWGYMNLGASVLPSTFLGILPVGMYLISINQLNYAEFFLCIVLSLGVVAPIKNFTNYVNHLKSIQYALTEVNQILSLEELVLSTKFKKPQHYEIAFNNVGFSYNKDKDDLVFKHLSFTVPENNFTAIVGASGSGKSTIAKLISRYWDVTSGEITIGGINIKDIESKQLNDLVGFVGQDNFLLNLTFKENIKLGNPEATDEAVEKAAKLAQCHEFIEKLPDGYDTNVGTVGDKLSGGEKQRVTIARMILKDAPIIVLDEATAYVDPDNEQKIQEALNVLTQDKTLIVIAHRLSTIQHADQIIVLGKQQILEKGSHHLLLKLNGNYKKMWDTHMHTKDWGINTGHN
>CP029658.1|AWQ90797.1|456001_457663_+|ABC-transporter-family-protein
MSFLNAIFIALPIFLAAKIFNNVLSHKPIYMKDILNVVIIMVLLVIGRFITAYFKSKSHESIAYEMSAKERLDIGDKLKNVRLGYFNSHHSNELTTIVTTDLTFLENFAMKMVDIVVNGYILITVLILSLLVVSWQVSLLACIGVLLSFFAIQLLERKSRQNAPAYHNVQNQLVEKVLEVIRGIQVIKSFAKENTSLKSFNQAVNESKRINTKIEMQYIPFNLLHLLSLKVVSIMIVLVACLLYMNHSIDLPTLIMISIFSFVIFDSVENINSAAHVLEMIDMTIDDIEKIKNAPELDENGKNLTIKNENIAFQNVNFSYDDKQVIKNVNFEIPTQTSTAIIGPSGSGKSTLCHLLLRFYDIDDGNIRIDGVDIKDMTLSTLMSKISAVFQKVYLFNDTIENNILFGNPGATKEEIIRAAKQACCHDFIMSLPEGYQTMLNEKGSNLSGGEKQRISIARAILKDAPIIILDEATASIDPENEQLIQTAINELSKGKTVITIAHKLETIKNADQIIVLNEGEIIQKGSHDELIRKPGMYQDFIRIKSKSAGWKL
>CP029658.1|AWQ91573.1|458115_458802_+|dethiobiotin-synthase
MRIFITSTNTDVGKTYVTKHLYHALKTRGHRVCVFKPFQTEERQDGTFPDLEVFKNECDLSYDITSLYTFKQPVSPHLAFKMTDQIFLNKQRVLDKVKVLDKEFDFILIEGAGGIAVPIYEGTDDFYMTKDLINDCADCVISVLPSKLGAISDAVVHQDYVNKNVSASNFLIMNRYTDSYIEKDNQITIGKLTNKTVYTFEEHATYENFSEAFLKQLIGVKNELHTTT
>CP029658.1|AWQ90746.1|458779_460138_+|adenosylmethionine-8-amino-7-oxononanoate-transaminase
MNYTQQLKQKDSEYVWHPFTQMGVYSKEEAIIIEKGKGSYLYDTNGNKYLDGYASLWVNVHGHNNKYLNKVIKKQLNKIAHSTLLGSSNIPSIELAEKLIEITPSNLRKVFYSDTGSASVEIAIKMAYQYWKNIDREKYAKKNKFITLNHGYHGDTIGAVSVGGIKTFHKIFKDLIFENIQVESPSFYRSNYDTENEIMTAILTNIEQILIERNDEIAGFILEPLIQGATGLFVHPKGFLKEVEKLCKKYDVLLICDEVAVGFGRTGKMFACNHEDVQPDIMCLGKAITGGYLPLAATLTSQKIYNTFLSDSHGVNTFFHGHTYTGNQIVCTVALENIRLYEKRKLLSHIETTSSTLEKQLHALKRHRNVGDVRGRGLMFGVELVTDKDSKTPLEIEKVERIVRKCKENGLMIRNLENVITFVPVLSMSNKEVKTMVRIFKKAVHNILDRKC
>CP029658.1|AWQ91957.1|460139_461147_+|biotin-synthase
MNLAKRILQGEQLTKETVLKIYEDTNIDTLDLLNEAYILRKHYFGKKVKLNMILNAKSGICPENCGYCGQSRDIKQKQRYALIPEEQIIDGAKVAHDNHIGTYCIVMSGRGPSDKEVDHISNTVRTIKSQHPQLKICACLGLTNDEQAKKLKSAGVDRYNHNINTSENYHDNVVTTHSYKDRTDTIELMKANNISPCSGVICGMGESNQDIVDMAFALKEMDADSIPINFLHPIKGTKFGSMDDLTPMKCLRIVALFRLINPTKEIRIAGGREVNLRSLQPLALKAANSIFVGDYLITGGQPNQLDYDMINDLGFEIDYDTCENKENKNDVSRAN
>CP029658.1|AWQ91257.1|461127_462240_+|aminotransferase-class-V-family-protein
MFQEQIDLLQQKGLYRSLKSVGYIDRQYIEVENKRCTNYTSNDYLGLGQIAFDKDDFERFMRKYSYHLSSSRLISGSSTAYEEIETMLAGWLGYSACTILNSGYDANLALFNIFKNTNCVVFSDQENHASIIDGIKLSGLEKVIYKHLDIADLEKRLEKYPNQNIPKIIISDSVFSTNGDVVDIGQLVSLKHKYNATLILDVSHSFGIENYSNYQGVDILTSSLSKACGAYGGVILSSNDVKDMLINHGRPLIYSSSLPIYNLYFIKRNIEKLINADDRRTKLNSLSKYFNQKLKALNVNYNSSNSPIKFIEFDDIEAAENIHQTLLKHHVFTSYLRYPTVTKPMLRISLSYFHTEQDIDRLFEILHQED
>CP029658.1|AWQ92214.1|462250_462943_+|6-carboxyhexanoate--CoA-ligase-family-protein
MYSIKMRSSNQDVHISGAETICEFDKIEQTVQRFYNKGFFHENGQPDFLNIKIQKIMEPIQQIKALQIIEDDKANLQHLTQECGVTEQALNQGMTYIKNETVYTGAIILSAISGKRLDSFGQRGIRATHFSFEDINNKGDLNERVTDALAIASCINAHPYVKGELCVSDDLTYTTGYFAAAKIGYHRLFDIKPVNTRYGGRIIFVDDCIDLNHYISFLESTPKQVVYETV
>CP029658.1|AWQ91441.1|462953_463421_+|queT-transporter-family-protein
MTSKDITQISVIAAILTILAVLEIPSIIPGLDFQLSAPAALLILAFFGIKKYFLGGLLSSVLLLIFGVFNPINVIISIIFRVIAIAVVYLLKINVLSLVLSSVLGSLVSRLLLSIILNLPVWVVLLNAIPGVIFTLIVAIPLYLTLRKRMAVLLR
>CP029658.1|AWQ90994.1|463472_464450_-|gamma-hemolysin-component-B
MKMNKLVKSSVATSMALLLLSGTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTFKSTYEIDWENHKVKLLDTKETENNK
>CP029658.1|AWQ90216.1|464451_465399_-|gamma-hemolysin-component-C
MLKIKILATTLSVSLLAPLANPLLENAKAANDTEDIGKGSDIEIIKRTEDKTSNKWGVTQNIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQNSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPSFIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRVHNAFVNRNYTVKYEVNWKTHEIKVKGQN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP029658_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029658_3

618588-618668

Orphan

Consensus_repeat	Method
CAAGTTGGCGGGGCCCCAACACAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029658_3

>merge|CP029658|3|618588-618668|CRISPRCasFinder
CAAGTTGGCGGGGCCCCAACACAGAAGCTGACAGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGA

>CP029658|3|2|618588-618668|CRISPRCasFinder
CAAGTTGGCGGGGCCCCAACACAGA	AGCTGACAGAAAGTCAGCTTACAATAATGTG
CAAGTTGGCGGGGCCCCAACATAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP029658.1\|AWQ91766.1\|612255_613260_+\|thiF-family-protein	unknown	unknown	gnl\|CDD\|181084
CP029658.1\|AWQ92710.1\|615611_616097_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
CP029658.1\|AWQ92043.1\|616562_616796_+\|molybdopterin-converting-factor,-subunit-1	unknown	unknown	gnl\|CDD\|340452
CP029658.1\|AWQ92165.1\|620676_621117_-\|winged-helix-DNA-binding-domain-protein	unknown	unknown	gnl\|CDD\|197670
CP029658.1\|AWQ92257.1\|621278_622043_+\|glyoxalase-like-domain-protein	unknown	unknown	gnl\|CDD\|379203
CP029658.1\|AWQ92889.1\|616802_617402_+\|putative-molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234725
CP029658.1\|AWQ90142.1\|619020_619371_+\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
CP029658.1\|AWQ90374.1\|616110_616557_+\|molybdopterin-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|223391
CP029658.1\|AWQ91798.1\|611480_612086_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|226628
CP029658.1\|AWQ90991.1\|627407_627623_-\|putative-membrane-protein	unknown	unknown	unknown
CP029658.1\|AWQ91129.1\|619472_620594_-\|sugar-(and-other)-transporter-family-protein	unknown	unknown	gnl\|CDD\|341042
CP029658.1\|AWQ92089.1\|629523_629655_+\|putative-nitrogen-regulation-protein-NIFR3	unknown	unknown	unknown
CP029658.1\|AWQ91794.1\|628266_629175_+\|membrane-transport-family-protein	unknown	unknown	gnl\|CDD\|223751
CP029658.1\|AWQ90407.1\|617514_618444_+\|molybdenum-cofactor-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|274250
CP029658.1\|AWQ92289.1\|613290_613797_+\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|223595
CP029658.1\|AWQ90814.1\|627969_628134_-\|hypothetical-protein	unknown	unknown	unknown
CP029658.1\|AWQ90177.1\|624110_627224_+\|swarming-motility-protein-SwrC	unknown	unknown	gnl\|CDD\|223911
CP029658.1\|AWQ92440.1\|614355_615615_+\|molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|238452
CP029658.1\|AWQ92133.1\|622674_623940_+\|glycine-glycyltransferase	unknown	unknown	gnl\|CDD\|225224
CP029658.1\|AWQ91172.1\|613798_614293_-\|molybdenum-cofactor-biosynthesis-protein-C	unknown	unknown	gnl\|CDD\|236483

Protein	Function_ID	Function_description	E-value
CP029658.1\|AWQ91766.1\|612255_613260_+\|thiF-family-protein	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	6.83722e-133
CP029658.1\|AWQ92710.1\|615611_616097_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	9.59347e-51
CP029658.1\|AWQ92043.1\|616562_616796_+\|molybdopterin-converting-factor,-subunit-1	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	8.16473e-25
CP029658.1\|AWQ92165.1\|620676_621117_-\|winged-helix-DNA-binding-domain-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.35323e-15
CP029658.1\|AWQ92257.1\|621278_622043_+\|glyoxalase-like-domain-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.50083e-38
CP029658.1\|AWQ92889.1\|616802_617402_+\|putative-molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	2.15389e-66
CP029658.1\|AWQ90142.1\|619020_619371_+\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
CP029658.1\|AWQ90374.1\|616110_616557_+\|molybdopterin-synthase-catalytic-subunit	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	6.99133e-58
CP029658.1\|AWQ91798.1\|611480_612086_+\|ABC-transporter-family-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	1.78595e-116
CP029658.1\|AWQ91129.1\|619472_620594_-\|sugar-(and-other)-transporter-family-protein	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.02034e-68
CP029658.1\|AWQ91794.1\|628266_629175_+\|membrane-transport-family-protein	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	7.28102e-43
CP029658.1\|AWQ90407.1\|617514_618444_+\|molybdenum-cofactor-biosynthesis-protein-A	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.19963e-143
CP029658.1\|AWQ92289.1\|613290_613797_+\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	2.42221e-64
CP029658.1\|AWQ90177.1\|624110_627224_+\|swarming-motility-protein-SwrC	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
CP029658.1\|AWQ92440.1\|614355_615615_+\|molybdopterin-molybdenumtransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	4.50966e-159
CP029658.1\|AWQ92133.1\|622674_623940_+\|glycine-glycyltransferase	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	1.81413e-143
CP029658.1\|AWQ91172.1\|613798_614293_-\|molybdenum-cofactor-biosynthesis-protein-C	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	2.93711e-97

>CP029658.1|AWQ90407.1|617514_618444_+|molybdenum-cofactor-biosynthesis-protein-A
MPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>CP029658.1|AWQ92889.1|616802_617402_+|putative-molybdenum-cofactor-guanylyltransferase
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNIYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>CP029658.1|AWQ92043.1|616562_616796_+|molybdopterin-converting-factor,-subunit-1
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>CP029658.1|AWQ90374.1|616110_616557_+|molybdopterin-synthase-catalytic-subunit
MKQFEIVIEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>CP029658.1|AWQ92710.1|615611_616097_+|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKTHGYTVATIKHHGHAKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRDEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>CP029658.1|AWQ92440.1|614355_615615_+|molybdopterin-molybdenumtransferase
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETKTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQKDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>CP029658.1|AWQ91172.1|613798_614293_-|molybdenum-cofactor-biosynthesis-protein-C
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIFKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQSGQ
>CP029658.1|AWQ92289.1|613290_613797_+|molybdenum-cofactor-biosynthesis-protein-B
MGEHQNVKLNRTVKAAVLTVSDTRDFVTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>CP029658.1|AWQ91766.1|612255_613260_+|thiF-family-protein
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDGCIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSDCTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>CP029658.1|AWQ91798.1|611480_612086_+|ABC-transporter-family-protein
MLKINVKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTTKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSKHIDQLIQTLNINHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG
>CP029658.1|AWQ90142.1|619020_619371_+|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>CP029658.1|AWQ91129.1|619472_620594_-|sugar-(and-other)-transporter-family-protein
MYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETDVINKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>CP029658.1|AWQ92165.1|620676_621117_-|winged-helix-DNA-binding-domain-protein
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>CP029658.1|AWQ92257.1|621278_622043_+|glyoxalase-like-domain-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>CP029658.1|AWQ92133.1|622674_623940_+|glycine-glycyltransferase
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYILNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>CP029658.1|AWQ90177.1|624110_627224_+|swarming-motility-protein-SwrC
MVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASAPNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHVDGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLMQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>CP029658.1|AWQ90991.1|627407_627623_-|putative-membrane-protein
MGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>CP029658.1|AWQ90814.1|627969_628134_-|hypothetical-protein
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>CP029658.1|AWQ91794.1|628266_629175_+|membrane-transport-family-protein
MTEQFTMIILLIALGYFLKRINFIKATDSQVIATLVLNVTLPSLVIVNLNSAELKLSFSILPILMIIYGIVAKMIAVWFFRKYDNHMRGSVGMMTGAMNIGLFAYPLIEVIWPKTGLIYFGMADIGGAFVMFGITYFVGSYFSEGSDQFDFKYLGKKLLQSVPLVTYIVMFILNINHIHLPHVAIDFFSILSHANMPLSMILLGVMLNFTLERKYIPATIKYLCLHYGLALVAGLLVHVLLPVSDDMIKTTLLVTWMFPVGVAIISYGIQFKYRTLPFIGMTTNLTIIISIIILYVYQAVFV
>CP029658.1|AWQ92089.1|629523_629655_+|putative-nitrogen-regulation-protein-NIFR3
MYGAYLINEYHQDFKSIANFKVLKRMINVMMCYCVLFLEPRIS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP029658_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029658_5

783070-783151

Orphan

Consensus_repeat	Method
AAGAAGCCCCTAACAACTAAAGTTG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP029658_5

>merge|CP029658|5|783070-783151|CRISPRCasFinder
AAGAAGCCCCTAACAACTAAAGTTGAAAAGTAGGAGCGCCTGCGCTAAGCGCATGCATAAGAGCCCCTAACAACTAAAGTTG

>CP029658|5|4|783070-783151|CRISPRCasFinder
AAGAAGCCCCTAACAACTAAAGTTG	AAAAGTAGGAGCGCCTGCGCTAAGCGCATGCA
TAAGAGCCCCTAACAACTAAAGTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP029658.1\|AWQ91701.1\|777390_779196_+\|glutamine-fructose-6-phosphate-transaminase	unknown	unknown	gnl\|CDD\|234729
CP029658.1\|AWQ92593.1\|785503_785824_-\|HTH-type-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP029658.1\|AWQ91521.1\|788045_788276_+\|putative-membrane-protein	unknown	unknown	unknown
CP029658.1\|AWQ91433.1\|791954_792665_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP029658.1\|AWQ92915.1\|788947_790321_+\|EVE-domain-protein	unknown	unknown	gnl\|CDD\|376640
CP029658.1\|AWQ91563.1\|775169_776390_-\|PTS-system-mannitol-specific-EIICB-component	unknown	unknown	gnl\|CDD\|225123
CP029658.1\|AWQ91642.1\|787076_788015_+\|mannose-6-phosphate-isomerase,-class-I	unknown	unknown	gnl\|CDD\|224399
CP029658.1\|AWQ90806.1\|790777_791191_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225556
CP029658.1\|AWQ90369.1\|791390_791834_+\|DNA-protection-during-starvation-protein-1	unknown	unknown	gnl\|CDD\|223854
CP029658.1\|AWQ92171.1\|779427_780210_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224044
CP029658.1\|AWQ92227.1\|781792_781951_-\|hypothetical-protein	unknown	unknown	unknown
CP029658.1\|AWQ91580.1\|780307_781135_+\|cof-like-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223635
CP029658.1\|AWQ91656.1\|773002_775135_-\|PRD-domain-protein	unknown	unknown	gnl\|CDD\|226234
CP029658.1\|AWQ92876.1\|772556_772991_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014
CP029658.1\|AWQ91584.1\|785975_786641_+\|NADH(P)-binding-family-protein	unknown	unknown	gnl\|CDD\|187554
CP029658.1\|AWQ91474.1\|784524_785502_-\|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	unknown	unknown	gnl\|CDD\|224151
CP029658.1\|AWQ90466.1\|776386_776710_-\|PTS-system-mannitol-specific-EIICB-component-domain-protein	unknown	unknown	gnl\|CDD\|225123
CP029658.1\|AWQ90279.1\|781943_782114_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226950
CP029658.1\|AWQ91875.1\|771450_772557_-\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
CP029658.1\|AWQ90217.1\|783167_784259_-\|putative-membrane-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP029658.1\|AWQ91701.1\|777390_779196_+\|glutamine-fructose-6-phosphate-transaminase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP029658.1\|AWQ92593.1\|785503_785824_-\|HTH-type-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
CP029658.1\|AWQ91433.1\|791954_792665_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP029658.1\|AWQ92915.1\|788947_790321_+\|EVE-domain-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	4.11455e-06
CP029658.1\|AWQ91563.1\|775169_776390_-\|PTS-system-mannitol-specific-EIICB-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP029658.1\|AWQ91642.1\|787076_788015_+\|mannose-6-phosphate-isomerase,-class-I	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
CP029658.1\|AWQ90806.1\|790777_791191_+\|hypothetical-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
CP029658.1\|AWQ90369.1\|791390_791834_+\|DNA-protection-during-starvation-protein-1	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
CP029658.1\|AWQ92171.1\|779427_780210_+\|ABC-transporter-family-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.29094e-106
CP029658.1\|AWQ92876.1\|772556_772991_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
CP029658.1\|AWQ91580.1\|780307_781135_+\|cof-like-hydrolase-family-protein	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	1.30952e-54
CP029658.1\|AWQ91656.1\|773002_775135_-\|PRD-domain-protein	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.02509e-68
CP029658.1\|AWQ91584.1\|785975_786641_+\|NADH(P)-binding-family-protein	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
CP029658.1\|AWQ91474.1\|784524_785502_-\|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.49165e-107
CP029658.1\|AWQ90466.1\|776386_776710_-\|PTS-system-mannitol-specific-EIICB-component-domain-protein	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	1.77377e-42
CP029658.1\|AWQ90279.1\|781943_782114_-\|hypothetical-protein	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00028059
CP029658.1\|AWQ91875.1\|771450_772557_-\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0

>CP029658.1|AWQ90279.1|781943_782114_-|hypothetical-protein
MSPKDTTRFETKPDHQAQFDWKESINFKTKDNQRIPLYIGVLLLYYSRFIIMHNNE
>CP029658.1|AWQ92227.1|781792_781951_-|hypothetical-protein
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>CP029658.1|AWQ91580.1|780307_781135_+|cof-like-hydrolase-family-protein
MDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTLDVTAYTNEEDGAAKYLAKHFLAD
>CP029658.1|AWQ92171.1|779427_780210_+|ABC-transporter-family-protein
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATTGGVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEVRNEAHHLLKLVGISAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLNILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>CP029658.1|AWQ91701.1|777390_779196_+|glutamine-fructose-6-phosphate-transaminase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEDGTPVVALATQENVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP029658.1|AWQ90466.1|776386_776710_-|PTS-system-mannitol-specific-EIICB-component-domain-protein
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAQQQQLWGSSLHYLIHQCYLVQ
>CP029658.1|AWQ91563.1|775169_776390_-|PTS-system-mannitol-specific-EIICB-component
MIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP029658.1|AWQ91656.1|773002_775135_-|PRD-domain-protein
MLLSTREKEMIALLIKYHSQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP029658.1|AWQ92876.1|772556_772991_-|mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>CP029658.1|AWQ91875.1|771450_772557_-|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>CP029658.1|AWQ90217.1|783167_784259_-|putative-membrane-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP029658.1|AWQ91474.1|784524_785502_-|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter
MSHSHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>CP029658.1|AWQ92593.1|785503_785824_-|HTH-type-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP029658.1|AWQ91584.1|785975_786641_+|NADH(P)-binding-family-protein
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>CP029658.1|AWQ91642.1|787076_788015_+|mannose-6-phosphate-isomerase,-class-I
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP029658.1|AWQ91521.1|788045_788276_+|putative-membrane-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP029658.1|AWQ92915.1|788947_790321_+|EVE-domain-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVKKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP029658.1|AWQ90806.1|790777_791191_+|hypothetical-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP029658.1|AWQ90369.1|791390_791834_+|DNA-protection-during-starvation-protein-1
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP029658.1|AWQ91433.1|791954_792665_-|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE

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Crispr_ID: CP029658_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029658_6

912304-912385

Orphan

Consensus_repeat	Method
ACAATGCAAGTTGGGGTGGGGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029658_6

>merge|CP029658|6|912304-912385|CRISPRCasFinder
ACAATGCAAGTTGGGGTGGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAAACAATGTAAGTTGGGGTGGGGGCC

>CP029658|6|5|912304-912385|CRISPRCasFinder
ACAATGCAAGTTGGGGTGGGGGCC	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA
ACAATGTAAGTTGGGGTGGGGGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP029658.1\|AWQ92518.1\|902634_903252_-\|accessory-gene-regulator-protein-B	unknown	unknown	gnl\|CDD\|226899
CP029658.1\|AWQ90932.1\|914318_915320_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369625
CP029658.1\|AWQ90464.1\|908698_910315_+\|chaperonin-GroL	unknown	unknown	gnl\|CDD\|234573
CP029658.1\|AWQ90337.1\|920151_920898_-\|HIRAN-domain-protein	unknown	unknown	gnl\|CDD\|214906
CP029658.1\|AWQ91958.1\|902488_902632_-\|cyclic-lactone-autoinducer-peptide-family-protein	unknown	unknown	gnl\|CDD\|129030
CP029658.1\|AWQ91710.1\|903433_903568_+\|delta-hemolysin-domain-protein	unknown	unknown	gnl\|CDD\|173213
CP029658.1\|AWQ90135.1\|919749_919935_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376389
CP029658.1\|AWQ92874.1\|905313_905940_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
CP029658.1\|AWQ90864.1\|916595_917420_-\|sphingomyelin-phosphodiesterase	unknown	unknown	gnl\|CDD\|132436
CP029658.1\|AWQ92405.1\|906136_907396_+\|putative-sdrH-protein	unknown	unknown	gnl\|CDD\|236768
CP029658.1\|AWQ90873.1\|919496_919679_-\|hypothetical-protein	unknown	unknown	unknown
CP029658.1\|AWQ92840.1\|904167_904953_-\|hydrolase,-carbon-nitrogen-family	unknown	unknown	gnl\|CDD\|143607
CP029658.1\|AWQ90686.1\|918704_919418_-\|pemK-like-family-protein	unknown	unknown	gnl\|CDD\|367091
CP029658.1\|AWQ91745.1\|907420_908164_-\|CAAX-protease-self-immunity-family-protein	unknown	unknown	gnl\|CDD\|376806
CP029658.1\|AWQ92579.1\|910854_912162_-\|ktr-system-potassium-uptake-protein-B	unknown	unknown	gnl\|CDD\|273349
CP029658.1\|AWQ91502.1\|908338_908623_+\|10-kDa-chaperonin	unknown	unknown	gnl\|CDD\|178988
CP029658.1\|AWQ91519.1\|917476_918514_-\|integrase	unknown	unknown	gnl\|CDD\|271189
CP029658.1\|AWQ91622.1\|912605_913829_-\|putative-succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|181490
CP029658.1\|AWQ90366.1\|919931_920078_-\|hypothetical-protein	unknown	unknown	unknown
CP029658.1\|AWQ92893.1\|915341_916358_+\|gamma-hemolysin-component-B	unknown	unknown	gnl\|CDD\|369625

Protein	Function_ID	Function_description	E-value
CP029658.1\|AWQ92518.1\|902634_903252_-\|accessory-gene-regulator-protein-B	gnl\|CDD\|226899	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription].	9.73444e-74
CP029658.1\|AWQ90932.1\|914318_915320_+\|hypothetical-protein	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	5.45609e-76
CP029658.1\|AWQ90464.1\|908698_910315_+\|chaperonin-GroL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
CP029658.1\|AWQ90337.1\|920151_920898_-\|HIRAN-domain-protein	gnl\|CDD\|214906	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. HIRAN is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this protein functions as a DNA-binding domain that probably recognises features associated with damaged DNA or stalled replication forks.	4.91907e-12
CP029658.1\|AWQ91958.1\|902488_902632_-\|cyclic-lactone-autoinducer-peptide-family-protein	gnl\|CDD\|129030	smart00794, AgrD, Staphylococcal AgrD protein. This family consists of several AgrD proteins from many Staphylococcus species. The agr locus was initially described in Staphylococcus aureus as an element controlling the production of exoproteins implicated in virulence. Its pattern of action has been shown to be complex, upregulating certain extracellular toxins and enzymes expressed post-exponentially and repressing some exponential-phase surface components. AgrD encodes the precursor of the autoinducing peptide (AIP).The AIP derived from AgrD by the action of AgrB interacts with AgrC in the membrane to activate AgrA, which upregulates transcription both from promoter P2, amplifying the response, and from P3, initiating the production of a novel effector: RNAIII. In S. aureus, delta-hemolysin is the only translation product of RNA III and is not involved in the regulatory functions of the transcript, which is therefore the primary agent for modulating the expression of other operons controlled by agr.	3.13559e-15
CP029658.1\|AWQ91710.1\|903433_903568_+\|delta-hemolysin-domain-protein	gnl\|CDD\|173213	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin.	8.25732e-15
CP029658.1\|AWQ90135.1\|919749_919935_-\|hypothetical-protein	gnl\|CDD\|376389	pfam00815, Histidinol_dh, Histidinol dehydrogenase.	0.00485103
CP029658.1\|AWQ92874.1\|905313_905940_-\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	8.42197e-117
CP029658.1\|AWQ90864.1\|916595_917420_-\|sphingomyelin-phosphodiesterase	gnl\|CDD\|132436	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins. [Cellular processes, Pathogenesis].	4.43323e-127
CP029658.1\|AWQ92405.1\|906136_907396_+\|putative-sdrH-protein	gnl\|CDD\|236768	PRK10819, PRK10819, transport protein TonB; Provisional.	6.53089e-10
CP029658.1\|AWQ92840.1\|904167_904953_-\|hydrolase,-carbon-nitrogen-family	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	5.69545e-126
CP029658.1\|AWQ90686.1\|918704_919418_-\|pemK-like-family-protein	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	0.000176738
CP029658.1\|AWQ91745.1\|907420_908164_-\|CAAX-protease-self-immunity-family-protein	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.67124e-11
CP029658.1\|AWQ92579.1\|910854_912162_-\|ktr-system-potassium-uptake-protein-B	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	7.96864e-82
CP029658.1\|AWQ91502.1\|908338_908623_+\|10-kDa-chaperonin	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.94304e-45
CP029658.1\|AWQ91519.1\|917476_918514_-\|integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.96401e-25
CP029658.1\|AWQ91622.1\|912605_913829_-\|putative-succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	0
CP029658.1\|AWQ92893.1\|915341_916358_+\|gamma-hemolysin-component-B	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.05827e-99

>CP029658.1|AWQ92579.1|910854_912162_-|ktr-system-potassium-uptake-protein-B
MNKVHKPLYFYLMLFFSTTIIGALLLYLPFTGKKPISFLDALFIASSAFTVTGLSPVDIGSQFNILGEIVILLLIQIGGLGIVTVTLLTLVFLNRKISMKNRFLIMVTWNIDEPGGVIKLIKHLAIYSLVTELIGMICLCLSFIPKFGIGKGLFLSLFTSVSAFNNAGFALFKNNLIDYSSDPIVIITISILIIFGGIGHFVVIDFINCKKLSKLSLHSKLVLTTTSILIIIGAITFFLLEQFNTMQHMGLVEKIGNSFFQSVTTRTAGFNSIDIASINKSTALMLMLLMFIGGAPLSAAGGIKITTFAVAFIFVLNYIRKENNVSVFNKEISDKHIKLSIVTINISFLFISIITFILSIINPNISLIKLLFEVVSAFGTVGLSMNLTTEYHGITKIIIIFVMLCGKVGLLTLLRTFIPPKSPKNYRYTKGQIYL
>CP029658.1|AWQ90464.1|908698_910315_+|chaperonin-GroL
MVKQLKFSEDARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVENKNEIAQVGAISAADEEIGRYISEAMEKVGNDGVITIEESNGLNTELEVVEGMQFDRGYQSPYMVTDSDKMVAELERPYILVTDKKISSFQDILPLLEQVVQSNRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVITDDLGLDLKDASIDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIEAEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEKNNDQPNMGGMPGMM
>CP029658.1|AWQ91502.1|908338_908623_+|10-kDa-chaperonin
MLKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE
>CP029658.1|AWQ91745.1|907420_908164_-|CAAX-protease-self-immunity-family-protein
MTRLWASLLTVIIYILSQFLPLLIVKKLPFVQYSGIELTKAVIYIQLVLFLIAATTIILINLKIKNPTKLELEVKEPKKYIIPWALLGFALVMIYQMVVSIVLTQIYGGQQVSPNTEKLIIIARKIPIFIFFVSIIGPLLEEYVFRKVIFGELFNAIKGNRIVAFIIATTVSSLIFALAHNDFKFIPVYFGMGVIFSLAYVWTKRLAVPIIIHMLQNGFVVIFQLLNPEALKKATEQANFIYHIFIP
>CP029658.1|AWQ92405.1|906136_907396_+|putative-sdrH-protein
MSYHWFKKMLLSTSILILSSSSLGLATHTVEAKDNLNGEKPTTNLNHNITSPSVNSEMNNNETGTPHESNQTGNEGTGSNSRDANPDSNNVKPDSNNQNPSTDSKPDPNNQNPSPNPKPDPDNPKPKPDPKPDPDKPKPNLDPKPDPDNPKPKPDPKPDPDKPKPNPDPKPDPDKPKPNPNPKPDPNKPNPNPSPDPDQPGDSNHSGGSKNGGTWNPNASDGSNQGQWQPNGNQGNSQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEVTDEDIYNIIRKQNFSGNAYLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKENKNESQRR
>CP029658.1|AWQ92874.1|905313_905940_-|nitroreductase-family-protein
MGLFKKDKKAMTFDNAMEERRSIYNLKDSISISDDELESMIAHAVKHVPSSFNSQSTRIVLLLNDNNNKFWDNTKAILKEVMGENRDFEPTEQKIDNFKHSYGTILFYEDQDVVSGLQEQMPNYYDNFAIWSTQTNAMHQFAIWTALATKGIGASLQHYNPLVDEMTSKEFNIPKSWKLIAQMPFGDIREAAGEKTFNPVEDRFVIKK
>CP029658.1|AWQ92840.1|904167_904953_-|hydrolase,-carbon-nitrogen-family
MKVQIYQLPIIFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNYQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLTAGENVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK
>CP029658.1|AWQ91710.1|903433_903568_+|delta-hemolysin-domain-protein
MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFTKK
>CP029658.1|AWQ92518.1|902634_903252_-|accessory-gene-regulator-protein-B
MIKDCTKSYNNSKESGVKLNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQIIVGNFFKILVTYSISIFLSVFLFTLVTHLSYMLIRYNAHGAHAKSSILCYIQSILTFVFVPYFLINIDINFTYLLALSIIGLISVVIYAPAATKKQPIPIKLVKRKKYLSIIMYLLVLILSLIIHPFYAQFMLLGILVESITLLPIFFPKED
>CP029658.1|AWQ91958.1|902488_902632_-|cyclic-lactone-autoinducer-peptide-family-protein
MNTLVNMFFDFIIKLAKAIGIVGGVNACSSLFDEPKVPAELTNLYDK
>CP029658.1|AWQ91622.1|912605_913829_-|putative-succinyl-diaminopimelate-desuccinylase
MTTFSEKEKIQLLADIVELQTENNNEIDVCNYLKDLFDKYDIKSEILKVNEHRANIVAEIGNGSPILALSGHMDVVDAGNQDNWTYPPFQLTEKAGKLYGRGTTDMKGGLMALVITLIELKEQNQLPQGTIRLLATAGEEKEQEGAKLLADKGYLDDVDGLIIAEPTGSGIYYAHKGSMSCKVTATGKAVHSSVPFIGDNAIDTLLEFYNQFKEKYSELKKHDTKHELDVAPMFKSLIGKEISEEDANYASGLTAVCSIINGGKQFNSVPDEASLEFNVRPVPEYDNDFIESFFQNIINDVDSNKLSLDIPSNHRPVTSDKNSKLITTIKDVASSYVEQDEIFVSALVGATDASSFLGDNKDNVDLAIFGPGNPLMAHQIDEYIEKDMYLKYIDIFKEASIQYLKEK
>CP029658.1|AWQ90932.1|914318_915320_+|hypothetical-protein
MLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKNSTVPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKFESHKEEKNSNWLKYPSEYHVDFQVKRNRKTEILDQLPKNKISTAKVDSTFSYSSGGKFDSTKGIGRTSSNSYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDLKYGGEVKNRNDELLFYRNTRIATVENPELSFASKYRYPALVRSGFNPEFLTYLSNEKSNEKTQFEVTYTRNQDILENRPGIHYAPPILEKNKDGQRLIVTYEVDWKNKTVKVVDKYSDDNKPYKEG
>CP029658.1|AWQ92893.1|915341_916358_+|gamma-hemolysin-component-B
MIKQLYKNITICSLAISTALTVFPATSYAKINSEIKAVSEKNLDGDTKMYTRTATTSDSQKNITQSLQFNFLTEPNYDKETVFIKAKGTIGSGLRILDPNGYWNSTLRWPGSYSVSIQNVDDNNNTNVTDFAPKNQDESREVKYTYGYKTGGDFSINRGGLTGNITKESNYSETISYQQPSYRTLLDQSTSHKGVGWKVEAHLINNMGHDHTRQLTNDSDNRTKSEIFSLTRNGNLWAKDNFTPKDKMPVTVSEGFNPEFLAVMSHDKKDKGKSQFVVHYKRSMDEFKIDWNRHGFWGYWSGENHVDKKEEKLSALYEVDWKTHDVKFVKVLNDNEKK
>CP029658.1|AWQ90864.1|916595_917420_-|sphingomyelin-phosphodiesterase
MYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNIHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYNDFSDHYPIKAYSK
>CP029658.1|AWQ91519.1|917476_918514_-|integrase
MKTRCYDGKKWQYEFKYEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDNYITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIMDVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEEDKKTTKILESM
>CP029658.1|AWQ90686.1|918704_919418_-|pemK-like-family-protein
MTHNIEKRINKLKTSGNPKFKKLDSDIHYLLKRFEGEKNHKGFYPKFKQGEIVFVDFGINVNKEFSNSHFAIVMNKNDSNTEDIVNVIPLSSKENKKYLKMNFDLKWEYYLRLFLNLISAQNNSAILKEVFDKKYQKNNTEFITKDYFSEFISDSLEIENKLNKIDRNINNIVSAIDKVKKLKGNSYACINSFQPISKFRIRKVLPQKIKNPVIDSSDIMLLINRINNNILQIPDIR
>CP029658.1|AWQ90873.1|919496_919679_-|hypothetical-protein
MKITNCKIKRETIVYEVLTSGNQPFTYELPKDLSSHNARKYLEFISQKIDGDKLTKEDSL
>CP029658.1|AWQ90135.1|919749_919935_-|hypothetical-protein
MSTYKEIEHLHINTGGKELTQEQIEEAKAFIDSQEFKDMIREAKESHQRVMESKITDRTKL
>CP029658.1|AWQ90366.1|919931_920078_-|hypothetical-protein
MDFKEVDINIEEWEMVEIPFYTEEELTYRLNNGLPITKSELEEQESKK
>CP029658.1|AWQ90337.1|920151_920898_-|HIRAN-domain-protein
MGSIFISHEEICFIRKEEDYIFKISLSEVIDYNTVVTIWKNQAFLTLNDNRKLTVYFVTNSPLTGFISILKTYMQLSKNKETIISNDCLPINDDEQTKVEIFDVVGLNYEGRRKELKKLIKKMKNNDDFFFLYSDLKGNELKEELLYEDKVYEISDYEVIPGVFLQKEPDNPYDENAIKVMISNEYSEFHVGYVPREYASRLVNHMDNIVSCNAYINGGKYKTLDYLEEKIVTKESDYGLRVHLEYKV

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Crispr_ID: CP029658_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029658_7

1346418-1346502

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029658_7

>merge|CP029658|7|1346418-1346502|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTGTGGGCCCCAACACAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTG

>CP029658|7|6|1346418-1346502|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTG	TGGGCCCCAACACAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
CP029658.1\|AWQ91976.1\|1354549_1355896_+\|threonylcarbamoyladenosine-tRNA-methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
CP029658.1\|AWQ92862.1\|1340547_1342749_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|225212
CP029658.1\|AWQ92376.1\|1352850_1353789_+\|ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
CP029658.1\|AWQ92183.1\|1340111_1340543_+\|comE-operon-protein-2	unknown	unknown	gnl\|CDD\|131622
CP029658.1\|AWQ92415.1\|1349044_1349671_+\|protein-GrpE	unknown	unknown	gnl\|CDD\|237622
CP029658.1\|AWQ90261.1\|1343824_1344076_-\|ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
CP029658.1\|AWQ90383.1\|1356188_1356365_+\|ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
CP029658.1\|AWQ92094.1\|1337606_1338191_+\|HD-domain-protein	unknown	unknown	gnl\|CDD\|224627
CP029658.1\|AWQ91659.1\|1344421_1346245_+\|GTP-binding-protein-LepA	unknown	unknown	gnl\|CDD\|235462
CP029658.1\|AWQ91139.1\|1349739_1351572_+\|chaperone-protein-DnaK	unknown	unknown	gnl\|CDD\|234715
CP029658.1\|AWQ92465.1\|1353790_1354543_+\|ribosomal-RNA-small-subunit-methyltransferase-E	unknown	unknown	gnl\|CDD\|224303
CP029658.1\|AWQ90693.1\|1338574_1339264_+\|methyltransferase-type-12	unknown	unknown	gnl\|CDD\|379312
CP029658.1\|AWQ91804.1\|1342805_1343780_+\|DNA-polymerase-III,-delta-subunit	unknown	unknown	gnl\|CDD\|235511
CP029658.1\|AWQ92604.1\|1338191_1338545_+\|ribosomal-silencing-factor-RsfS	unknown	unknown	gnl\|CDD\|223870
CP029658.1\|AWQ92411.1\|1346969_1347935_+\|radical-SAM-superfamily-protein	unknown	unknown	gnl\|CDD\|236309
CP029658.1\|AWQ91048.1\|1351707_1352847_+\|chaperone-protein-DnaJ	unknown	unknown	gnl\|CDD\|237656
CP029658.1\|AWQ90704.1\|1348035_1349013_+\|heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|273017
CP029658.1\|AWQ91838.1\|1339312_1339990_+\|competence-ComEA-helix-hairpin-helix-repeat-region-domain-protein	unknown	unknown	gnl\|CDD\|224472
CP029658.1\|AWQ91696.1\|1337230_1337617_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|273101
CP029658.1\|AWQ91872.1\|1356608_1357292_+\|putative-membrane-bound-serine-protease	unknown	unknown	gnl\|CDD\|223961

Protein	Function_ID	Function_description	E-value
CP029658.1\|AWQ91976.1\|1354549_1355896_+\|threonylcarbamoyladenosine-tRNA-methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0
CP029658.1\|AWQ92862.1\|1340547_1342749_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	3.64233e-90
CP029658.1\|AWQ92376.1\|1352850_1353789_+\|ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	9.7051e-134
CP029658.1\|AWQ92183.1\|1340111_1340543_+\|comE-operon-protein-2	gnl\|CDD\|131622	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.	5.88513e-94
CP029658.1\|AWQ92415.1\|1349044_1349671_+\|protein-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	3.74407e-81
CP029658.1\|AWQ90261.1\|1343824_1344076_-\|ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.42889e-17
CP029658.1\|AWQ90383.1\|1356188_1356365_+\|ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.15423e-10
CP029658.1\|AWQ92094.1\|1337606_1338191_+\|HD-domain-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	2.21948e-80
CP029658.1\|AWQ91659.1\|1344421_1346245_+\|GTP-binding-protein-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
CP029658.1\|AWQ91139.1\|1349739_1351572_+\|chaperone-protein-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
CP029658.1\|AWQ92465.1\|1353790_1354543_+\|ribosomal-RNA-small-subunit-methyltransferase-E	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	1.90273e-91
CP029658.1\|AWQ90693.1\|1338574_1339264_+\|methyltransferase-type-12	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	8.34268e-16
CP029658.1\|AWQ91804.1\|1342805_1343780_+\|DNA-polymerase-III,-delta-subunit	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	4.1415e-104
CP029658.1\|AWQ92604.1\|1338191_1338545_+\|ribosomal-silencing-factor-RsfS	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	5.95861e-47
CP029658.1\|AWQ92411.1\|1346969_1347935_+\|radical-SAM-superfamily-protein	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
CP029658.1\|AWQ91048.1\|1351707_1352847_+\|chaperone-protein-DnaJ	gnl\|CDD\|237656	PRK14280, PRK14280, molecular chaperone DnaJ.	0
CP029658.1\|AWQ90704.1\|1348035_1349013_+\|heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	2.05887e-119
CP029658.1\|AWQ91838.1\|1339312_1339990_+\|competence-ComEA-helix-hairpin-helix-repeat-region-domain-protein	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	8.07958e-34
CP029658.1\|AWQ91696.1\|1337230_1337617_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|273101	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	5.84299e-49
CP029658.1\|AWQ91872.1\|1356608_1357292_+\|putative-membrane-bound-serine-protease	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	8.78003e-63

>CP029658.1|AWQ91659.1|1344421_1346245_+|GTP-binding-protein-LepA
MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRDMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNELELLPVINKIDLPAAEPERVKQEIEDMIGLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISSIRIVDGVVKAGDKIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDDSRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCILRDGSEVTVDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE
>CP029658.1|AWQ90261.1|1343824_1344076_-|ribosomal-protein-S20
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
>CP029658.1|AWQ91804.1|1342805_1343780_+|DNA-polymerase-III,-delta-subunit
MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIVDACAETDYKLKSSYMDKQLILELFILSL
>CP029658.1|AWQ92862.1|1340547_1342749_+|DNA-internalization-related-competence-protein-ComEC/Rec2
MLYVALSMIVGVLWNSSKVLSTFLFILLLYITYRKNKIVYAPISLFLIIFSSWYLHYSQQAIFNYINYIERNSQFNERAQVIQIQRQGSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNENKFVTLKLQSIVVQSCLESNRSNLIEKHKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGITIIVLTLYAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQQLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFHDWLLDLFTRIKQSHFSVPKFNDWIFIIFIISVYYIFWLLAKRKYILVTFWTIIILTLLITFPTNSHHKITMLNVGQGDSILYEGGKNQNVLIDTGGKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKGYSSNTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLLKKYNLPEIDILKVGHHGSKTSSSKEFIEMIKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVDSNSYGNASGL
>CP029658.1|AWQ92183.1|1340111_1340543_+|comE-operon-protein-2
MAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
>CP029658.1|AWQ91838.1|1339312_1339990_+|competence-ComEA-helix-hairpin-helix-repeat-region-domain-protein
MYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI
>CP029658.1|AWQ90693.1|1338574_1339264_+|methyltransferase-type-12
MYDQLTQDQPYEKWFEIVKNHCKDESNILDIGCGTGSLTVQLEALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDTERLFFIAKK
>CP029658.1|AWQ92604.1|1338191_1338545_+|ribosomal-silencing-factor-RsfS
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
>CP029658.1|AWQ92094.1|1337606_1338191_+|HD-domain-protein
MNIEKAKRLAKEKLPEKRYNHSLRVAETAIKLAEIYDGDTSKVELAGVLHDFCKYDDLGKMYQIVRQYELGNDLLSYGSEILHGPVCAAIMEHEYGINDEEVLMAIKYHTTGRQQMTKTEKLIFIADYIEPGRTIPGVDDIRDMAYNQGSLDKTIYEISKRTVLFLIQKDITVYNKTIDCLNYYNYSDERIKDD
>CP029658.1|AWQ91696.1|1337230_1337617_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH
>CP029658.1|AWQ92411.1|1346969_1347935_+|radical-SAM-superfamily-protein
MYVGGGTPTALSINQLERLLKAIRDTFTITGEYTFEANPDELTKEKVQLLEKYGVNRISMGVQTFKPELLSVLGRTHNTEDIYTSVLNAKNAGIKSISLDLMYHLPKQTIEDFEQSLDLALDMDIQHISSYGLILEPKTQFYNMYRKGLLKLPNEDLGADMYQLLMSKIEQSPFHQYEISNFALDGHESEHNKVYWFNEEYYGFGAGASGYVDGVRYTNINPVNHYIKAINKESKAILVSNKPSLTERMEEEMFLGLRLNEGVSSSRFKKKFDQSIESVFGQTINNLKEKELIVEKNDAIALTKRGKVIGNEVFEAFLIND
>CP029658.1|AWQ90704.1|1348035_1349013_+|heat-inducible-transcription-repressor-HrcA
MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQYTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFSNDKLNTISNFVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLINTMNNHISNQSNSIYMGGKVKLIDALNESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETLKGQIAVIGPTAMHYQNVIQLLNRIW
>CP029658.1|AWQ92415.1|1349044_1349671_+|protein-GrpE
MTNKDESVEKNTESTVEETNIKQNIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERALQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVNQ
>CP029658.1|AWQ91139.1|1349739_1351572_+|chaperone-protein-DnaK
MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKNGETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAESYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDKDEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDKNGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNEADSLVFQVEKTLTDLGENIGEEDKKSAEEKKDALKTALEGQDIEDIKSKKEELEKVIQELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK
>CP029658.1|AWQ91048.1|1351707_1352847_+|chaperone-protein-DnaJ
MAKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENKTVKLEVKVPEGVDNEQQIRLAGEGSPGVNGGPAGDLYVVFRVKPSETFKRDGDDIYYKLNVSFPQAALGDEIKIPTLNNEVMLTIPAGTQTGKQFRLKEKGIKNVHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQLNGEEINEQPSNFKDRAKRFFKGE
>CP029658.1|AWQ92376.1|1352850_1353789_+|ribosomal-protein-L11-methyltransferase
MNWTELSIIINHEAVELATNILENHGSNGVVIEDSDDLINQPEDKYGEIYALKKEDYPDKGVRLKAYFNEMTYDDKLRQQIKDELLNLDELDQHNIQFSEQIIAETDWENEWKNYFHPFRASKKFTIVPSWETYAKEADEELCIELDPGMAFGTGDHPTTSMCLKAIETYVLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPGNLLKDETEKFDIVIANILAHIIDEMIEDAYNTLNEGGYFITSGIIKEKYEGIQSHMERVGFKIISEQHDNGWVCLVGQKVSE
>CP029658.1|AWQ92465.1|1353790_1354543_+|ribosomal-RNA-small-subunit-methyltransferase-E
MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVVKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALSAISYEKELMG
>CP029658.1|AWQ91976.1|1354549_1355896_+|threonylcarbamoyladenosine-tRNA-methylthiotransferase-MtaB
MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKVKITQANYPLNEGQAIKVVDFATNKSDREVLV
>CP029658.1|AWQ90383.1|1356188_1356365_+|ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
>CP029658.1|AWQ91872.1|1356608_1357292_+|putative-membrane-bound-serine-protease
MTTILESTAGDTWVEQVSNIIVQPIFTLILTCLTFLGFVYQLYSKKINAAGIIATLSLLILFLGFLIQGNVNMHSILIFSIGVILVVIELFVVGAVIGIIGMILITISITTLGDNLLFMLANVIVALILTIVEWVILVKIFNRKIPFLDKVILKDSTNSESGYNSHDNRSHLVGKTAQTVTDLRPAGIIFCENERIDAVSDGNFILRNKTVKILEVEGTRVVVREVD

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Crispr_ID: CP029658_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029658_8

2180951-2181032

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029658_8

>merge|CP029658|8|2180951-2181032|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCTCAATTTCTACAGACAATGCAAGTTGGGG

>CP029658|8|7|2180951-2181032|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGATTCTCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP029658.1\|AWQ90307.1\|2178388_2179414_-\|methionine-import-ATP-binding-protein-MetN-2	unknown	unknown	gnl\|CDD\|224058
CP029658.1\|AWQ92078.1\|2177700_2178354_-\|methionine-import-system-permease-protein-MetP	unknown	unknown	gnl\|CDD\|224922
CP029658.1\|AWQ90190.1\|2182192_2182573_-\|glycine-cleavage-system-H-protein	unknown	unknown	gnl\|CDD\|234918
CP029658.1\|AWQ91863.1\|2183230_2183551_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
CP029658.1\|AWQ91338.1\|2176861_2177683_-\|NLPA-lipofamily-protein	unknown	unknown	gnl\|CDD\|224381
CP029658.1\|AWQ92519.1\|2174139_2174901_-\|feS-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
CP029658.1\|AWQ90542.1\|2185187_2185610_+\|peroxiredoxin,-Ohr-subfamily-protein	unknown	unknown	gnl\|CDD\|274649
CP029658.1\|AWQ91063.1\|2182730_2183087_-\|transcriptional-regulator,-Spx/MgsR-family-protein	unknown	unknown	gnl\|CDD\|239334
CP029658.1\|AWQ91482.1\|2184323_2185040_-\|3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|184156
CP029658.1\|AWQ90428.1\|2175228_2176080_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224946
CP029658.1\|AWQ90363.1\|2181135_2182014_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226395
CP029658.1\|AWQ90943.1\|2179663_2179960_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
CP029658.1\|AWQ92810.1\|2172734_2174042_-\|feS-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
CP029658.1\|AWQ91873.1\|2183701_2184241_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380312
CP029658.1\|AWQ90514.1\|2186008_2186503_+\|acetyltransferase-domain-protein	unknown	unknown	gnl\|CDD\|372596
CP029658.1\|AWQ92612.1\|2176313_2176508_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225777
CP029658.1\|AWQ91268.1\|2182015_2182129_-\|hypothetical-protein	unknown	unknown	unknown
CP029658.1\|AWQ91437.1\|2171378_2172620_-\|putative-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
CP029658.1\|AWQ90709.1\|2186657_2187275_+\|lysE-type-translocator-family-protein	unknown	unknown	gnl\|CDD\|224198
CP029658.1\|AWQ90714.1\|2179952_2180339_-\|toprim-domain-protein	unknown	unknown	gnl\|CDD\|224572

Protein	Function_ID	Function_description	E-value
CP029658.1\|AWQ90307.1\|2178388_2179414_-\|methionine-import-ATP-binding-protein-MetN-2	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	2.03316e-170
CP029658.1\|AWQ92078.1\|2177700_2178354_-\|methionine-import-system-permease-protein-MetP	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	8.5871e-98
CP029658.1\|AWQ90190.1\|2182192_2182573_-\|glycine-cleavage-system-H-protein	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	9.01516e-70
CP029658.1\|AWQ91863.1\|2183230_2183551_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.4922e-24
CP029658.1\|AWQ91338.1\|2176861_2177683_-\|NLPA-lipofamily-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.02861e-112
CP029658.1\|AWQ92519.1\|2174139_2174901_-\|feS-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
CP029658.1\|AWQ90542.1\|2185187_2185610_+\|peroxiredoxin,-Ohr-subfamily-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
CP029658.1\|AWQ91482.1\|2184323_2185040_-\|3-dehydroquinate-dehydratase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	3.2619e-146
CP029658.1\|AWQ90428.1\|2175228_2176080_+\|hypothetical-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	7.67366e-77
CP029658.1\|AWQ90363.1\|2181135_2182014_-\|hypothetical-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	3.13065e-77
CP029658.1\|AWQ90943.1\|2179663_2179960_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
CP029658.1\|AWQ92810.1\|2172734_2174042_-\|feS-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	3.36148e-135
CP029658.1\|AWQ91873.1\|2183701_2184241_-\|nitroreductase-family-protein	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
CP029658.1\|AWQ90514.1\|2186008_2186503_+\|acetyltransferase-domain-protein	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	1.02873e-46
CP029658.1\|AWQ92612.1\|2176313_2176508_-\|hypothetical-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
CP029658.1\|AWQ91063.1\|2182730_2183087_-\|transcriptional-regulator,-Spx/MgsR-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
CP029658.1\|AWQ91437.1\|2171378_2172620_-\|putative-cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
CP029658.1\|AWQ90709.1\|2186657_2187275_+\|lysE-type-translocator-family-protein	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	2.60719e-61
CP029658.1\|AWQ90714.1\|2179952_2180339_-\|toprim-domain-protein	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.45102e-36

>CP029658.1|AWQ90714.1|2179952_2180339_-|toprim-domain-protein
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>CP029658.1|AWQ90943.1|2179663_2179960_-|thioredoxin-family-protein
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>CP029658.1|AWQ90307.1|2178388_2179414_-|methionine-import-ATP-binding-protein-MetN-2
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEHGPVTQVFENPQHTVTKRFVKEDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>CP029658.1|AWQ92078.1|2177700_2178354_-|methionine-import-system-permease-protein-MetP
MPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWIVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>CP029658.1|AWQ91338.1|2176861_2177683_-|NLPA-lipofamily-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYDLDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>CP029658.1|AWQ92612.1|2176313_2176508_-|hypothetical-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>CP029658.1|AWQ90428.1|2175228_2176080_+|hypothetical-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTGLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFTGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>CP029658.1|AWQ92519.1|2174139_2174901_-|feS-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>CP029658.1|AWQ92810.1|2172734_2174042_-|feS-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKHFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDKNASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>CP029658.1|AWQ91437.1|2171378_2172620_-|putative-cysteine-desulfurase
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPMQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDIDQLINALKQTKEFFSYEF
>CP029658.1|AWQ90363.1|2181135_2182014_-|hypothetical-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLSQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLNDLPEQQELFPVNEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQVHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>CP029658.1|AWQ91268.1|2182015_2182129_-|hypothetical-protein
MKENLLGTIIWSIATFYYSRMMKIMNLAILKIKIGGS
>CP029658.1|AWQ90190.1|2182192_2182573_-|glycine-cleavage-system-H-protein
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE
>CP029658.1|AWQ91063.1|2182730_2183087_-|transcriptional-regulator,-Spx/MgsR-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>CP029658.1|AWQ91863.1|2183230_2183551_+|thioredoxin-family-protein
MQAIKSNESFKSIINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>CP029658.1|AWQ91873.1|2183701_2184241_-|nitroreductase-family-protein
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>CP029658.1|AWQ91482.1|2184323_2185040_-|3-dehydroquinate-dehydratase
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFINDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIIKHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>CP029658.1|AWQ90542.1|2185187_2185610_+|peroxiredoxin,-Ohr-subfamily-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>CP029658.1|AWQ90514.1|2186008_2186503_+|acetyltransferase-domain-protein
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNAYFDEHWLFYDLINK
>CP029658.1|AWQ90709.1|2186657_2187275_+|lysE-type-translocator-family-protein
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGEAQIISPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF

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Crispr_ID: CP029658_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029658_9

2229636-2229714

Unclear

Consensus_repeat	Method
AGAATTTCGAAAAGAAATTCTACA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of CP029658_9

>merge|CP029658|9|2229636-2229714|CRISPRCasFinder
AGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGCGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACA

>CP029658|9|8|2229636-2229714|CRISPRCasFinder
AGAATTTCGAAAAGAAATTCTACA	GGCAATGCAAGTTGGCGGGGCCCCAACACAG
AGAATTTCGAAAAGAAATTCTACA

Protein	Signature genes	Signature genes Name	Protein_function
CP029658.1\|AWQ92241.1\|2228444_2229377_-\|HPr(Ser)-kinase/phosphatase	unknown	unknown	gnl\|CDD\|235459
CP029658.1\|AWQ92628.1\|2221868_2222864_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211689
CP029658.1\|AWQ92073.1\|2235381_2236032_-\|HD-containing-hydrolase-like-enzyme-family-protein	unknown	unknown	gnl\|CDD\|378993
CP029658.1\|AWQ90700.1\|2241823_2242396_-\|ribosomal-subunit-interface-protein	unknown	unknown	gnl\|CDD\|224461
CP029658.1\|AWQ92541.1\|2243123_2244206_-\|helicase-domain-protein	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|226583
CP029658.1\|AWQ91486.1\|2220813_2221758_-\|sporulation-Regulator-WhiA-C-terminal-domain-protein	unknown	unknown	gnl\|CDD\|273194
CP029658.1\|AWQ91896.1\|2224167_2224311_+\|hypothetical-protein	unknown	unknown	unknown
CP029658.1\|AWQ90441.1\|2242456_2243131_-\|putative-amidophosphoribosyltransferase,-ComFC	unknown	unknown	gnl\|CDD\|223970
CP029658.1\|AWQ90931.1\|2225659_2227099_-\|tetratricopeptide-repeat-family-protein	unknown	unknown	gnl\|CDD\|276808
CP029658.1\|AWQ91039.1\|2227106_2227592_-\|bacterial-transferase-hexapeptide-family-protein	unknown	unknown	gnl\|CDD\|100053
CP029658.1\|AWQ91625.1\|2230040_2232887_-\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
CP029658.1\|AWQ92127.1\|2224657_2225593_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
CP029658.1\|AWQ90742.1\|2232894_2234880_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
CP029658.1\|AWQ90451.1\|2227599_2228439_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
CP029658.1\|AWQ91921.1\|2235148_2235346_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227234
CP029658.1\|AWQ90882.1\|2236205_2237045_-\|staphyloxanthin-biosynthesis-protein,-putative	unknown	unknown	gnl\|CDD\|226451
CP029658.1\|AWQ90673.1\|2219662_2220250_-\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
CP029658.1\|AWQ92252.1\|2222860_2223772_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224574
CP029658.1\|AWQ91396.1\|2237453_2238446_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
CP029658.1\|AWQ91566.1\|2238878_2241410_-\|preprotein-translocase,-SecA-subunit	unknown	unknown	gnl\|CDD\|237259

Protein	Function_ID	Function_description	E-value
CP029658.1\|AWQ92241.1\|2228444_2229377_-\|HPr(Ser)-kinase/phosphatase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP029658.1\|AWQ92628.1\|2221868_2222864_-\|hypothetical-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
CP029658.1\|AWQ92073.1\|2235381_2236032_-\|HD-containing-hydrolase-like-enzyme-family-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
CP029658.1\|AWQ90700.1\|2241823_2242396_-\|ribosomal-subunit-interface-protein	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37
CP029658.1\|AWQ92541.1\|2243123_2244206_-\|helicase-domain-protein	gnl\|CDD\|226583	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].	1.70203e-180
CP029658.1\|AWQ91486.1\|2220813_2221758_-\|sporulation-Regulator-WhiA-C-terminal-domain-protein	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
CP029658.1\|AWQ90441.1\|2242456_2243131_-\|putative-amidophosphoribosyltransferase,-ComFC	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.0058e-51
CP029658.1\|AWQ90931.1\|2225659_2227099_-\|tetratricopeptide-repeat-family-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.14043e-06
CP029658.1\|AWQ91039.1\|2227106_2227592_-\|bacterial-transferase-hexapeptide-family-protein	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
CP029658.1\|AWQ91625.1\|2230040_2232887_-\|excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP029658.1\|AWQ92127.1\|2224657_2225593_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
CP029658.1\|AWQ90742.1\|2232894_2234880_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP029658.1\|AWQ90451.1\|2227599_2228439_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	1.75588e-120
CP029658.1\|AWQ91921.1\|2235148_2235346_-\|hypothetical-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	9.71142e-29
CP029658.1\|AWQ90882.1\|2236205_2237045_-\|staphyloxanthin-biosynthesis-protein,-putative	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.97111e-42
CP029658.1\|AWQ90673.1\|2219662_2220250_-\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP029658.1\|AWQ92252.1\|2222860_2223772_-\|hypothetical-protein	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
CP029658.1\|AWQ91396.1\|2237453_2238446_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
CP029658.1\|AWQ91566.1\|2238878_2241410_-\|preprotein-translocase,-SecA-subunit	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0

>CP029658.1|AWQ92241.1|2228444_2229377_-|HPr(Ser)-kinase/phosphatase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP029658.1|AWQ90451.1|2227599_2228439_-|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>CP029658.1|AWQ91039.1|2227106_2227592_-|bacterial-transferase-hexapeptide-family-protein
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP029658.1|AWQ90931.1|2225659_2227099_-|tetratricopeptide-repeat-family-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP029658.1|AWQ92127.1|2224657_2225593_-|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP029658.1|AWQ91896.1|2224167_2224311_+|hypothetical-protein
MQVGVWAPTKRISKRNSTGNASWGVGPNTEAYDKSAYDNVQVGVVQR
>CP029658.1|AWQ92252.1|2222860_2223772_-|hypothetical-protein
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP029658.1|AWQ92628.1|2221868_2222864_-|hypothetical-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP029658.1|AWQ91486.1|2220813_2221758_-|sporulation-Regulator-WhiA-C-terminal-domain-protein
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP029658.1|AWQ90673.1|2219662_2220250_-|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP029658.1|AWQ91625.1|2230040_2232887_-|excinuclease-ABC-subunit-A
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIDVPEYRRPASDRKISIRGARSNNLKGIDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>CP029658.1|AWQ90742.1|2232894_2234880_-|excinuclease-ABC-subunit-B
MVEHYPFKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>CP029658.1|AWQ91921.1|2235148_2235346_-|hypothetical-protein
MVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>CP029658.1|AWQ92073.1|2235381_2236032_-|HD-containing-hydrolase-like-enzyme-family-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>CP029658.1|AWQ90882.1|2236205_2237045_-|staphyloxanthin-biosynthesis-protein,-putative
MKKTLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>CP029658.1|AWQ91396.1|2237453_2238446_-|peptide-chain-release-factor-2
MAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>CP029658.1|AWQ91566.1|2238878_2241410_-|preprotein-translocase,-SecA-subunit
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>CP029658.1|AWQ90700.1|2241823_2242396_-|ribosomal-subunit-interface-protein
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ
>CP029658.1|AWQ90441.1|2242456_2243131_-|putative-amidophosphoribosyltransferase,-ComFC
MNNCLSCGAKLYENITIYNLFKKPNRLCDRCKENWDNIKLDIKARRCSRCLKHLNQDEAYCLDCKFLSAHFNLMEQLYCQFQYDGLMKEMIHQYKFLKDYYLCELLAHLIEIPQTSYDYIVPIPSSPAHDLSRTFNPVEAVLKAKGIRFDKILKMSNRPKQSHLTKKERLADENPFIIDTELDLNGKEILLVDDIYTTGLTIHRAGCKLYAKNIRKFKVFAFAR
>CP029658.1|AWQ92541.1|2243123_2244206_-|helicase-domain-protein
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVSPRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSKVEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETMIKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKLECPAGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

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Crispr_ID: CP029658_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029658_10

2624016-2624118

Orphan

Consensus_repeat	Method
CAAATTTAATACTCAATTCATATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029658_10

>merge|CP029658|10|2624016-2624118|CRISPRCasFinder
CAAATTTAATACTCAATTCATATATAGCTTTGATTTAAAAACTGATTTTTTATAAACCTATAGAACTGTAATTTACTTTCAAATTTAATACTCAATTCATAAA

>CP029658|10|9|2624016-2624118|CRISPRCasFinder
CAAATTTAATACTCAATTCATATA	TAGCTTTGATTTAAAAACTGATTTTTTATAAACCTATAGAACTGTAATTTACTTT
CAAATTTAATACTCAATTCATAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP029658.1\|AWQ90897.1\|2621712_2622120_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584
CP029658.1\|AWQ91046.1\|2628276_2629800_+\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
CP029658.1\|AWQ91880.1\|2623042_2623999_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235334
CP029658.1\|AWQ91010.1\|2616283_2617825_-\|GMP-synthase	unknown	unknown	gnl\|CDD\|234614
CP029658.1\|AWQ90698.1\|2631139_2631523_+\|putative-membrane-protein	unknown	unknown	unknown
CP029658.1\|AWQ91789.1\|2620621_2621200_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
CP029658.1\|AWQ90833.1\|2622262_2622925_+\|hypothetical-protein	unknown	unknown	unknown
CP029658.1\|AWQ92124.1\|2614538_2615243_+\|pemK-like-family-protein	unknown	unknown	gnl\|CDD\|367091
CP029658.1\|AWQ92689.1\|2617849_2619316_-\|inosine-5'-monophosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
CP029658.1\|AWQ90362.1\|2624976_2626365_+\|L-cystine-uptake-protein-TcyP	unknown	unknown	gnl\|CDD\|224736
CP029658.1\|AWQ92135.1\|2626444_2627200_-\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
CP029658.1\|AWQ91640.1\|2619353_2620583_-\|xanthine-permease-family-protein	unknown	unknown	gnl\|CDD\|274468
CP029658.1\|AWQ92220.1\|2627691_2628261_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
CP029658.1\|AWQ91944.1\|2629979_2630171_+\|hypothetical-protein	unknown	unknown	unknown
CP029658.1\|AWQ92186.1\|2632595_2632829_-\|transglycosylase-associated-family-protein	unknown	unknown	gnl\|CDD\|225170
CP029658.1\|AWQ90668.1\|2613912_2614140_+\|putative-transposase	unknown	unknown	unknown
CP029658.1\|AWQ90705.1\|2631588_2632170_-\|histidine-phosphatase-super-family-protein	unknown	unknown	gnl\|CDD\|223483
CP029658.1\|AWQ92302.1\|2630243_2630870_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380196
CP029658.1\|AWQ92508.1\|2615634_2616171_+\|hypothetical-protein	unknown	unknown	unknown
CP029658.1\|AWQ92682.1\|2633146_2633410_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238045

Protein	Function_ID	Function_description	E-value
CP029658.1\|AWQ90897.1\|2621712_2622120_+\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.17298e-12
CP029658.1\|AWQ91046.1\|2628276_2629800_+\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
CP029658.1\|AWQ91010.1\|2616283_2617825_-\|GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
CP029658.1\|AWQ91789.1\|2620621_2621200_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	4.43378e-117
CP029658.1\|AWQ92124.1\|2614538_2615243_+\|pemK-like-family-protein	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	5.38181e-08
CP029658.1\|AWQ92689.1\|2617849_2619316_-\|inosine-5'-monophosphate-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
CP029658.1\|AWQ90362.1\|2624976_2626365_+\|L-cystine-uptake-protein-TcyP	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
CP029658.1\|AWQ92135.1\|2626444_2627200_-\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	4.50551e-88
CP029658.1\|AWQ91640.1\|2619353_2620583_-\|xanthine-permease-family-protein	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	6.14613e-166
CP029658.1\|AWQ92220.1\|2627691_2628261_+\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124
CP029658.1\|AWQ92186.1\|2632595_2632829_-\|transglycosylase-associated-family-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	5.69552e-09
CP029658.1\|AWQ91880.1\|2623042_2623999_+\|hypothetical-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0.00231645
CP029658.1\|AWQ90705.1\|2631588_2632170_-\|histidine-phosphatase-super-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	2.4566e-49
CP029658.1\|AWQ92302.1\|2630243_2630870_+\|hypothetical-protein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.15385e-71
CP029658.1\|AWQ92682.1\|2633146_2633410_+\|hypothetical-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.0037414

>CP029658.1|AWQ91880.1|2623042_2623999_+|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKGKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKVLAESTNKVEKNAVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQSKNENAAETSNKEATVDADAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL
>CP029658.1|AWQ90833.1|2622262_2622925_+|hypothetical-protein
MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEEMDLRKPF
>CP029658.1|AWQ90897.1|2621712_2622120_+|hypothetical-protein
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHKEVQEHNSAYEEIDITHFAEASKGPKA
>CP029658.1|AWQ91789.1|2620621_2621200_-|xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKIKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVVEE
>CP029658.1|AWQ91640.1|2619353_2620583_-|xanthine-permease-family-protein
MYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILVLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVK
>CP029658.1|AWQ92689.1|2617849_2619316_-|inosine-5'-monophosphate-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHVVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>CP029658.1|AWQ91010.1|2616283_2617825_-|GMP-synthase
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCKGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>CP029658.1|AWQ92508.1|2615634_2616171_+|hypothetical-protein
MHNKNEFNKKLKDFIGSDKRMALVKGYINEYKLTTVLRALNNSDYTKGTIHTRSIGNLKQIVDNRIIPKNITQNQIFKLSNLTLEVNLYERNTIYHGDFAIYYPVESALIIETDTPRLINHINNNPVQKIFIITTNDWSFNTLELEKIVDETIIYDLKQEDPKQYEILYKNKHGKLPY
>CP029658.1|AWQ92124.1|2614538_2615243_+|pemK-like-family-protein
MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYSIAIHSDVTSNKKRYYKSFSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTIVPLSSKGNKNYLKLNESVLNLTATDLKKQIIDISSKVQALTQKYRDIDIKLSTEDKKLLSNLNQKANELYRVIGVYSKHKGKDTYVNISAITTISKRRISKINDSDPTGTIIISEDDMNEIEKQLKIKFFSN
>CP029658.1|AWQ90668.1|2613912_2614140_+|putative-transposase
MVRLYKNGKLKNEIIRKYDLKPSIISNSIKQHQNTGPFNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI
>CP029658.1|AWQ90362.1|2624976_2626365_+|L-cystine-uptake-protein-TcyP
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLVYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKRAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLIILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFESNDNAALTSH
>CP029658.1|AWQ92135.1|2626444_2627200_-|NADPH-dependent-oxidoreductase
MSDYVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>CP029658.1|AWQ92220.1|2627691_2628261_+|peroxiredoxin
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>CP029658.1|AWQ91046.1|2628276_2629800_+|alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDEKSKELKELLTEISDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKNLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMSTGEEHLLNLDGIFVQIGLLPNTSWLKDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>CP029658.1|AWQ91944.1|2629979_2630171_+|hypothetical-protein
MNEIIMLLRTIPTSKLIQPIMQLFIDNAILNIVQNDALLIEKATHARNHLRLWSLQGHRDIPN
>CP029658.1|AWQ92302.1|2630243_2630870_+|hypothetical-protein
MKKRLLLSTFLASALILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>CP029658.1|AWQ90698.1|2631139_2631523_+|putative-membrane-protein
MKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIILMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFISAIITLAIGGKSVDKNDSH
>CP029658.1|AWQ90705.1|2631588_2632170_-|histidine-phosphatase-super-family-protein
MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLCDYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISANPKYEKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQKDDIVIVAHQVVIRCLMVYFNKVSREEAVDLKVENCKPYIIE
>CP029658.1|AWQ92186.1|2632595_2632829_-|transglycosylase-associated-family-protein
MLIVGGLIGWAAGAIMGKDIPGGILGNIIAGIIGSWVGGKLFGQWGPELGSIYILPALIGSIILIAIVTLILRAMRK
>CP029658.1|AWQ92682.1|2633146_2633410_+|hypothetical-protein
MNMHILYNLRTKHNLEIDELAQQLNEKYGTKYEAHQIWEWENHHHEPKFKDAMHLADFFDAPYEMFLESKVKEYQKHLEEVDIRMDK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029658_6	6.1\|912328\|34\|CP029658\|CRISPRCasFinder	912328-912361	34	CP029658.1	1873687-1873720	0	1.0
CP029658_6	6.1\|912328\|34\|CP029658\|CRISPRCasFinder	912328-912361	34	CP029658.1	2229682-2229715	0	1.0
CP029658_2	2.1\|453781\|33\|CP029658\|CRISPRCasFinder	453781-453813	33	CP029658.1	2180662-2180694	1	0.97
CP029658_2	2.1\|453781\|33\|CP029658\|CRISPRCasFinder	453781-453813	33	CP029658.1	2216881-2216913	1	0.97
CP029658_3	3.1\|618613\|31\|CP029658\|CRISPRCasFinder	618613-618643	31	CP029658.1	2216941-2216971	1	0.968
CP029658_6	6.1\|912328\|34\|CP029658\|CRISPRCasFinder	912328-912361	34	CP029658.1	1219896-1219929	1	0.971
CP029658_7	7.1\|1346444\|33\|CP029658\|CRISPRCasFinder	1346444-1346476	33	CP029658.1	1661973-1662005	1	0.97
CP029658_7	7.1\|1346444\|33\|CP029658\|CRISPRCasFinder	1346444-1346476	33	CP029658.1	2224124-2224156	1	0.97
CP029658_8	8.1\|2180975\|34\|CP029658\|CRISPRCasFinder	2180975-2181008	34	CP029658.1	1661973-1662006	1	0.971
CP029658_1	1.1\|378228\|46\|CP029658\|PILER-CR	378228-378273	46	CP029658.1	374578-374623	2	0.957
CP029658_1	1.2\|378291\|37\|CP029658\|PILER-CR	378291-378327	37	CP029658.1	374641-374677	2	0.946
CP029658_2	2.1\|453781\|33\|CP029658\|CRISPRCasFinder	453781-453813	33	CP029658.1	888286-888318	2	0.939
CP029658_2	2.1\|453781\|33\|CP029658\|CRISPRCasFinder	453781-453813	33	CP029658.1	2216937-2216969	2	0.939
CP029658_3	3.1\|618613\|31\|CP029658\|CRISPRCasFinder	618613-618643	31	CP029658.1	50195-50225	2	0.935
CP029658_3	3.1\|618613\|31\|CP029658\|CRISPRCasFinder	618613-618643	31	CP029658.1	1014586-1014616	2	0.935
CP029658_3	3.1\|618613\|31\|CP029658\|CRISPRCasFinder	618613-618643	31	CP029658.1	1331808-1331838	2	0.935
CP029658_3	3.1\|618613\|31\|CP029658\|CRISPRCasFinder	618613-618643	31	CP029658.1	1573467-1573497	2	0.935
CP029658_3	3.1\|618613\|31\|CP029658\|CRISPRCasFinder	618613-618643	31	CP029658.1	1573583-1573613	2	0.935
CP029658_3	3.1\|618613\|31\|CP029658\|CRISPRCasFinder	618613-618643	31	CP029658.1	1662017-1662047	2	0.935
CP029658_3	3.1\|618613\|31\|CP029658\|CRISPRCasFinder	618613-618643	31	CP029658.1	1868094-1868124	2	0.935
CP029658_3	3.1\|618613\|31\|CP029658\|CRISPRCasFinder	618613-618643	31	CP029658.1	1970617-1970647	2	0.935
CP029658_3	3.1\|618613\|31\|CP029658\|CRISPRCasFinder	618613-618643	31	CP029658.1	2180666-2180696	2	0.935
CP029658_3	3.1\|618613\|31\|CP029658\|CRISPRCasFinder	618613-618643	31	CP029658.1	2216885-2216915	2	0.935
CP029658_3	3.1\|618613\|31\|CP029658\|CRISPRCasFinder	618613-618643	31	CP029658.1	2396039-2396069	2	0.935
CP029658_3	3.1\|618613\|31\|CP029658\|CRISPRCasFinder	618613-618643	31	CP029658.1	2662825-2662855	2	0.935
CP029658_6	6.1\|912328\|34\|CP029658\|CRISPRCasFinder	912328-912361	34	CP029658.1	179820-179853	2	0.941
CP029658_6	6.1\|912328\|34\|CP029658\|CRISPRCasFinder	912328-912361	34	CP029658.1	1657599-1657632	2	0.941

1. spacer 6.1|912328|34|CP029658|CRISPRCasFinder matches to position: 1873687-1873720, mismatch: 0, identity: 1.0

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgaaaagaaattctacaa	Protospacer
**********************************

2. spacer 6.1|912328|34|CP029658|CRISPRCasFinder matches to position: 2229682-2229715, mismatch: 0, identity: 1.0

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgaaaagaaattctacaa	Protospacer
**********************************

3. spacer 2.1|453781|33|CP029658|CRISPRCasFinder matches to position: 2180662-2180694, mismatch: 1, identity: 0.97

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcggaaagtcagcttacaataatg	Protospacer
*** *****************************

4. spacer 2.1|453781|33|CP029658|CRISPRCasFinder matches to position: 2216881-2216913, mismatch: 1, identity: 0.97

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcggaaagtcagcttacaataatg	Protospacer
*** *****************************

5. spacer 3.1|618613|31|CP029658|CRISPRCasFinder matches to position: 2216941-2216971, mismatch: 1, identity: 0.968

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacggaaagtcagcttacaataatgtg	Protospacer
*******.***********************

6. spacer 6.1|912328|34|CP029658|CRISPRCasFinder matches to position: 1219896-1219929, mismatch: 1, identity: 0.971

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacaaagaatttcgaaaagaaattctacaa	Protospacer
********.*************************

7. spacer 7.1|1346444|33|CP029658|CRISPRCasFinder matches to position: 1661973-1662005, mismatch: 1, identity: 0.97

tgggccccaacacagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
************ ********************

8. spacer 7.1|1346444|33|CP029658|CRISPRCasFinder matches to position: 2224124-2224156, mismatch: 1, identity: 0.97

tgggccccaacacagagaaattggattcccaat	CRISPR spacer
tgggccccaacacagagaaattggatttccaat	Protospacer
***************************.*****

9. spacer 8.1|2180975|34|CP029658|CRISPRCasFinder matches to position: 1661973-1662006, mismatch: 1, identity: 0.971

atgggccccaacaaagagaaattggattctcaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
*****************************.****

10. spacer 1.1|378228|46|CP029658|PILER-CR matches to position: 374578-374623, mismatch: 2, identity: 0.957

acaaagataaacctaattatcaatttggtggacacaacagtgttga	CRISPR spacer
acaaagataaacctaattatcaattcggtggacacaatagtgttga	Protospacer
*************************.***********.********

11. spacer 1.2|378291|37|CP029658|PILER-CR matches to position: 374641-374677, mismatch: 2, identity: 0.946

ttccaaaagtaagtggtcaaaatgaaggtcaacaaac	CRISPR spacer
ttccaaaagtaagcggccaaaatgaaggtcaacaaac	Protospacer
*************.**.********************

12. spacer 2.1|453781|33|CP029658|CRISPRCasFinder matches to position: 888286-888318, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaggctggcggaaagtcagcttacaataatg	Protospacer
*** .****************************

13. spacer 2.1|453781|33|CP029658|CRISPRCasFinder matches to position: 2216937-2216969, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacggaaagtcagcttacaataatg	Protospacer
*** *****.***********************

14. spacer 3.1|618613|31|CP029658|CRISPRCasFinder matches to position: 50195-50225, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

15. spacer 3.1|618613|31|CP029658|CRISPRCasFinder matches to position: 1014586-1014616, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

16. spacer 3.1|618613|31|CP029658|CRISPRCasFinder matches to position: 1331808-1331838, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

17. spacer 3.1|618613|31|CP029658|CRISPRCasFinder matches to position: 1573467-1573497, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

18. spacer 3.1|618613|31|CP029658|CRISPRCasFinder matches to position: 1573583-1573613, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

19. spacer 3.1|618613|31|CP029658|CRISPRCasFinder matches to position: 1662017-1662047, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

20. spacer 3.1|618613|31|CP029658|CRISPRCasFinder matches to position: 1868094-1868124, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

21. spacer 3.1|618613|31|CP029658|CRISPRCasFinder matches to position: 1970617-1970647, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

22. spacer 3.1|618613|31|CP029658|CRISPRCasFinder matches to position: 2180666-2180696, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

23. spacer 3.1|618613|31|CP029658|CRISPRCasFinder matches to position: 2216885-2216915, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

24. spacer 3.1|618613|31|CP029658|CRISPRCasFinder matches to position: 2396039-2396069, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

25. spacer 3.1|618613|31|CP029658|CRISPRCasFinder matches to position: 2662825-2662855, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

26. spacer 6.1|912328|34|CP029658|CRISPRCasFinder matches to position: 179820-179853, mismatch: 2, identity: 0.941

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacaaaaagaatttcgaaaagaaattctacaa	Protospacer
****** *.*************************

27. spacer 6.1|912328|34|CP029658|CRISPRCasFinder matches to position: 1657599-1657632, mismatch: 2, identity: 0.941

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgataagaaattccacaa	Protospacer
******************* *********.****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029658_4	4.1\|770769\|34\|CP029658\|CRISPRCasFinder	770769-770802	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
CP029658_4	4.1\|770769\|34\|CP029658\|CRISPRCasFinder	770769-770802	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765
CP029658_5	5.1\|783095\|32\|CP029658\|CRISPRCasFinder	783095-783126	32	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	41454-41485	9	0.719
CP029658_5	5.1\|783095\|32\|CP029658\|CRISPRCasFinder	783095-783126	32	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	296489-296520	10	0.688

1. spacer 4.1|770769|34|CP029658|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
agcatataaaagctataaagctaaagatatgcaa	Protospacer
  **  *. **.* ********************

2. spacer 4.1|770769|34|CP029658|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
tactgtttataacaataaagctaaagttattcaa	Protospacer
. * ***   **************** *** ***

3. spacer 5.1|783095|32|CP029658|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 9, identity: 0.719

aaaagtaggagcgcctgcgctaagcgcatgca	CRISPR spacer
tggaggtggagcgcctgcgcaaggcgcatgag	Protospacer
 ..**  ************* *.******* .

4. spacer 5.1|783095|32|CP029658|CRISPRCasFinder matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

aaaagtaggagcgcctgcgctaagcgcatgca	CRISPR spacer
tcgaagccgagcgcctgcgcgtagcgcatgcg	Protospacer
  .*.   ************  *********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

43349 : 102707

Staphylococcus_phage(46.15%)

integrase,tRNA,transposase

attL 46350:46367|attR 88688:88705

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ90868.1\|43349_44336_+\|tRNA	putative tRNA-dihydrouridine synthase	NA	NA	NA	NA
AWQ92074.1\|45002_46196_-	quinone oxidoreductase	NA	NA	NA	NA
AWQ90549.1\|46214_47549_-	metallo-beta-lactamase superfamily protein	NA	NA	NA	NA
46350:46367	attL	NA	NA	NA	NA
AWQ92615.1\|47579_48644_-	dsrE/DsrF/DrsH-like family protein	A0A2H4PQR9	Staphylococcus_phage	7.7e-09	41.8
AWQ92055.1\|48780_49041_+	metal-sensitive transcriptional repressor family protein	NA	NA	NA	NA
AWQ91011.1\|49040_49796_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
AWQ92426.1\|50229_50556_+\|tRNA	putative tRNA-dihydrouridine synthase domain protein	NA	NA	NA	NA
AWQ90400.1\|50739_52485_-	sporadically distributed, TIGR04141 family protein	NA	NA	NA	NA
AWQ90317.1\|53071_54580_-	kinase domain protein	NA	NA	NA	NA
AWQ91298.1\|54694_55321_+	hypothetical protein	NA	NA	NA	NA
AWQ92204.1\|55802_56240_+	hypothetical protein	NA	NA	NA	NA
AWQ91839.1\|56439_57336_+	hypothetical protein	NA	NA	NA	NA
AWQ91737.1\|57345_58215_+	hypothetical protein	NA	NA	NA	NA
AWQ90796.1\|58759_59317_-	K+-transporting ATPase, C subunit	NA	NA	NA	NA
AWQ91095.1\|59332_61354_-	K+-transporting ATPase, B subunit	E4ZFI9	Streptococcus_phage	6.6e-41	29.0
AWQ91136.1\|61372_63049_-	K+-transporting ATPase, A subunit	NA	NA	NA	NA
AWQ92118.1\|63316_65917_+	osmosensitive K+ channel His kinase sensor domain protein	A0A2K9L0Z8	Tupanvirus	1.7e-09	21.6
AWQ92018.1\|65960_66656_+	transcriptional regulatory, C terminal family protein	NA	NA	NA	NA
AWQ92035.1\|67586_67748_-	hypothetical protein	NA	NA	NA	NA
AWQ91626.1\|67719_68304_+	C4-dicarboxylate anaerobic carrier family protein	NA	NA	NA	NA
AWQ91451.1\|68510_68645_-	hypothetical protein	NA	NA	NA	NA
AWQ91693.1\|68814_69129_+	helix-turn-helix domain protein	A0A0N7GFG6	Staphylococcus_phage	7.7e-50	96.2
AWQ90138.1\|69113_69467_+	HTH-like domain protein	A0A0N9S8A3	Staphylococcus_phage	4.2e-44	91.7
AWQ91952.1\|69578_69956_+\|integrase	integrase core domain protein	A0A0N9SIX5	Staphylococcus_phage	1.4e-61	95.2
AWQ91654.1\|70206_71253_+	hypothetical protein	NA	NA	NA	NA
AWQ92613.1\|71445_71742_+	hypothetical protein	NA	NA	NA	NA
AWQ92764.1\|71741_73535_+	hypothetical protein	NA	NA	NA	NA
AWQ92173.1\|73768_75118_+	resolvase, N terminal domain protein	Q9T200	Bacillus_phage	1.4e-18	25.1
AWQ91633.1\|75139_76768_+	recombinase family protein	A0A0S2SXR4	Bacillus_phage	2.4e-46	31.4
AWQ91591.1\|77285_77636_+	hypothetical protein	NA	NA	NA	NA
AWQ91056.1\|77797_78034_+	hypothetical protein	NA	NA	NA	NA
AWQ90598.1\|78168_78558_+	hypothetical protein	NA	NA	NA	NA
AWQ92102.1\|78578_78896_+	radC-like JAB domain protein	NA	NA	NA	NA
AWQ92311.1\|79014_80100_+\|integrase	phage integrase, N-terminal SAM-like domain protein	A0A0A8WIF9	Clostridium_phage	4.5e-12	28.3
AWQ91261.1\|80159_80327_+\|transposase	putative transposase B domain protein	NA	NA	NA	NA
AWQ92266.1\|80600_81989_+\|integrase	phage integrase family protein	NA	NA	NA	NA
AWQ90548.1\|81995_82373_+\|transposase	transposase C family protein	NA	NA	NA	NA
AWQ92747.1\|82733_83306_+	streptomycin 3''-adenylyltransferase	NA	NA	NA	NA
AWQ91343.1\|83431_84163_-	rRNA adenine N-6-methyltransferase	E4ZFQ0	Streptococcus_phage	1.9e-51	47.5
AWQ90484.1\|84671_84818_+	putative methyltransferase domain protein	NA	NA	NA	NA
AWQ90294.1\|84799_85333_+	methyltransferase domain protein	NA	NA	NA	NA
AWQ91246.1\|85671_86316_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
AWQ92206.1\|86315_86576_-	metal-sensitive transcriptional repressor family protein	NA	NA	NA	NA
AWQ90513.1\|86711_87776_+	dsrE/DsrF/DrsH-like family protein	NA	NA	NA	NA
AWQ92527.1\|87808_88747_+	metallo-beta-lactamase superfamily protein	NA	NA	NA	NA
88688:88705	attR	NA	NA	NA	NA
AWQ92687.1\|88837_89143_+	rhodanese-like domain protein	NA	NA	NA	NA
AWQ91655.1\|89256_90156_-	ROK family protein	NA	NA	NA	NA
AWQ90150.1\|90873_91245_-	methicillin resistance regulatory protein MecI	NA	NA	NA	NA
AWQ92554.1\|91244_92900_-	methicillin resistance mecR1 protein	NA	NA	NA	NA
AWQ90241.1\|93101_95108_+	penicillin-binding protein 2'	NA	NA	NA	NA
AWQ91471.1\|95153_95582_-	maoC like domain protein	NA	NA	NA	NA
AWQ90302.1\|95678_96422_-	glycerophosphoryl diester phosphodiesterase family protein	NA	NA	NA	NA
AWQ91937.1\|96686_97361_+	DDE domain protein	A0A0N9RU54	Staphylococcus_phage	2.6e-127	99.1
AWQ90838.1\|97562_98324_+	kanamycin nucleotidyltransferase	NA	NA	NA	NA
AWQ91291.1\|98660_98945_+	glyoxalase-like domain protein	NA	NA	NA	NA
AWQ91529.1\|99472_100714_+	plasmid recombination enzyme family protein	NA	NA	NA	NA
AWQ92105.1\|101234_101732_+	replication family protein	NA	NA	NA	NA
AWQ91942.1\|101735_101942_+	replication family protein	A0A286QS97	Streptococcus_phage	1.3e-08	62.0
AWQ90394.1\|102032_102707_+\|transposase	transposase IS66 family protein	A0A0N9RU54	Staphylococcus_phage	2.6e-127	99.1

DBSCAN-SWA_2

681641 : 726571

Staphylococcus_phage(91.89%)

capsid,head,tail,portal,integrase,holin,terminase

attL 679690:679705|attR 700250:700265

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
679690:679705	attL	NA	NA	NA	NA
AWQ91354.1\|681641_681959_-\|integrase	phage integrase family protein	A0A2I6PEN0	Staphylococcus_phage	4.4e-53	100.0
AWQ91557.1\|682556_682823_-	hypothetical protein	A0A2I6PEN0	Staphylococcus_phage	1.1e-23	70.9
AWQ92873.1\|683152_683557_+	hypothetical protein	M9QRQ8	Staphylococcus_phage	1.7e-65	99.3
AWQ92443.1\|683553_683679_-	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.6e-11	97.6
AWQ91571.1\|683789_684185_-	hypothetical protein	A0A2I6PEJ7	Staphylococcus_phage	3.8e-70	100.0
AWQ92177.1\|684213_684648_-	putative translation initiation factor IF-2	A0A2I6PEM0	Staphylococcus_phage	4.5e-24	99.3
AWQ90540.1\|684665_685127_-	hypothetical protein	A0A2I6PEK4	Staphylococcus_phage	1.3e-85	99.3
AWQ90950.1\|685139_685469_-	helix-turn-helix family protein	A0A2I6PEN2	Staphylococcus_phage	3.2e-54	100.0
AWQ91956.1\|685701_685821_+	helix-turn-helix family protein	A0A2I6PEL6	Staphylococcus_phage	1.5e-14	97.4
AWQ90359.1\|685925_686081_+	hypothetical protein	A0A2I6PEL1	Staphylococcus_phage	4.0e-23	100.0
AWQ91478.1\|686077_686296_-	hypothetical protein	A0A2I6PE22	Staphylococcus_phage	7.8e-33	97.2
AWQ91740.1\|686363_686579_+	hypothetical protein	A0A2I6PEK7	Staphylococcus_phage	1.0e-32	100.0
AWQ92371.1\|686603_686867_+	homeo-like domain protein	A0A2I6PEL8	Staphylococcus_phage	2.5e-46	100.0
AWQ91181.1\|687118_687442_+	hypothetical protein	A0A2I6PE70	Staphylococcus_phage	6.5e-52	100.0
AWQ92354.1\|687456_687819_+	hypothetical protein	B5WZM2	Staphylococcus_phage	8.3e-56	100.0
AWQ92492.1\|687815_688595_+	hypothetical protein	A7TWG4	Staphylococcus_phage	6.9e-140	100.0
AWQ90414.1\|688736_688979_+	hypothetical protein	A0A2I6PEL9	Staphylococcus_phage	2.9e-36	100.0
AWQ90198.1\|689004_689562_+	hypothetical protein	A0A2I6PEP8	Staphylococcus_phage	1.8e-97	100.0
AWQ92429.1\|689629_690442_+	hypothetical protein	A0A2I6PEL4	Staphylococcus_phage	1.8e-154	100.0
AWQ91130.1\|690487_691579_+	DNA polymerase A family protein	A0A2I6PE86	Staphylococcus_phage	1.4e-210	100.0
AWQ90417.1\|691591_691777_+	hypothetical protein	A0A2I6PEM8	Staphylococcus_phage	7.0e-27	100.0
AWQ91269.1\|691776_691959_+	PVL ORF-50-like family protein	A0A2I6PEL5	Staphylococcus_phage	1.5e-21	96.4
AWQ92596.1\|691955_692177_+	PVL ORF-50-like family protein	A0A2I6PEL5	Staphylococcus_phage	1.9e-34	98.6
AWQ90749.1\|692176_692431_+	hypothetical protein	A0A059T7J9	Staphylococcus_phage	1.4e-41	97.6
AWQ91871.1\|692436_692679_+	phage family protein	A0A1P8L6E3	Staphylococcus_phage	3.0e-41	100.0
AWQ92134.1\|692743_693193_+	yopX family protein	A0A2I6PDH2	Staphylococcus_phage	9.3e-81	100.0
AWQ91892.1\|693189_693525_+	acetyltransferase family protein	A1KX82	Staphylococcus_virus	3.7e-58	100.0
AWQ91051.1\|693638_693956_+	hypothetical protein	A1KX84	Staphylococcus_virus	1.1e-22	70.6
AWQ92163.1\|693948_694485_+	dUTPase family protein	A1KX85	Staphylococcus_virus	3.3e-93	98.3
AWQ92002.1\|694521_694728_+	hypothetical protein	S4V684	Staphylococcus_phage	7.6e-30	100.0
AWQ91540.1\|694920_695157_+	hypothetical protein	A7TWI0	Staphylococcus_phage	3.6e-36	100.0
AWQ92269.1\|695149_695440_+	putative orf31	A7TWI1	Staphylococcus_phage	1.8e-45	100.0
AWQ91990.1\|695531_695684_+	transcriptional activator RinB family protein	A0A2I6PEM5	Staphylococcus_phage	2.0e-19	100.0
AWQ91672.1\|695820_695952_+	hypothetical protein	A0A2I6PEP5	Staphylococcus_phage	3.0e-16	100.0
AWQ91350.1\|696235_696472_+	hypothetical protein	A0A2I6PEP4	Staphylococcus_phage	9.3e-32	100.0
AWQ90825.1\|696501_696822_+	hypothetical protein	A0A2I6PEP4	Staphylococcus_phage	1.9e-56	100.0
AWQ90502.1\|696815_698504_+	virulence-associated E family protein	A0A2I6PEP4	Staphylococcus_phage	0.0e+00	99.5
AWQ91192.1\|698697_698817_-	hypothetical protein	Q4ZCF9	Staphylococcus_virus	3.3e-14	92.3
AWQ92346.1\|699014_699305_+	VRR-NUC domain protein	U5U7A3	Staphylococcus_phage	4.9e-51	100.0
AWQ92845.1\|699285_699456_+	phage helicase domain protein	A0A2I6PER4	Staphylococcus_phage	3.0e-24	100.0
AWQ90678.1\|699508_699658_+	helicase domain protein	A0A2I6PER4	Staphylococcus_phage	4.2e-06	100.0
AWQ91867.1\|699794_699914_+	SNF2 family N-terminal domain protein	A0A2I6PDQ0	Staphylococcus_phage	8.5e-10	93.8
AWQ92695.1\|700412_700529_+	putative phage helicase	Q4ZCM8	Staphylococcus_virus	5.2e-12	94.1
700250:700265	attR	NA	NA	NA	NA
AWQ91206.1\|700834_700960_+	putative phage regulatory protein	A0A2I6PEN3	Staphylococcus_phage	3.9e-05	100.0
AWQ91817.1\|701227_701410_+	hypothetical protein	A0A2I6PF37	Staphylococcus_phage	1.1e-08	69.4
AWQ91003.1\|702176_702305_+\|terminase	putative phage terminase, large subunit-like protein	A0A2I6PEP0	Staphylococcus_phage	3.5e-09	100.0
AWQ92401.1\|703163_703277_+\|terminase	terminase large subunit domain protein	A0A2I6PEP0	Staphylococcus_phage	2.0e-08	92.9
AWQ90941.1\|703808_703922_+\|portal	prophage L54a, portal, HK97 family domain protein	A0A2I6PER5	Staphylococcus_phage	9.9e-08	82.4
AWQ91684.1\|704081_704231_+\|portal	putative portal protein	A0A2I6PER5	Staphylococcus_phage	5.3e-17	100.0
AWQ90172.1\|704632_704782_+	hypothetical protein	A0A2I6PER5	Staphylococcus_phage	2.7e-21	97.9
AWQ91317.1\|705716_705980_+\|capsid	phage capsid family protein	M9QQM0	Staphylococcus_phage	3.6e-16	64.5
AWQ90282.1\|706325_706457_+\|capsid	phage major capsid domain protein	A0A2I6PEQ3	Staphylococcus_phage	6.5e-11	93.9
AWQ92702.1\|706762_706948_+\|head,tail	phage gp6-like head-tail connector family protein	A0A2I6PEQ1	Staphylococcus_phage	5.2e-22	91.1
AWQ90202.1\|707368_707488_+	hypothetical protein	A0A2I6PDD3	Staphylococcus_phage	3.1e-12	100.0
AWQ92813.1\|707639_707768_+	hypothetical protein	A0A2I6PDD3	Staphylococcus_phage	5.2e-05	65.8
AWQ91123.1\|709075_709216_-	hypothetical protein	NA	NA	NA	NA
AWQ90367.1\|709599_709746_+	hypothetical protein	A0A2I6PDE6	Staphylococcus_phage	1.3e-12	85.7
AWQ90449.1\|709971_710124_+	hypothetical protein	A0A2I6PDD9	Staphylococcus_phage	6.6e-15	93.3
AWQ90164.1\|710545_710725_+\|tail	tail length tape measure domain protein	NA	NA	NA	NA
AWQ92149.1\|710782_711313_+\|tail	phage tail tape measure protein, TP901 family, core region	A0A2I6PER7	Staphylococcus_phage	2.0e-74	99.4
AWQ90741.1\|711475_712444_+\|tail	phage tail tape measure protein, TP901 family, core region	A0A2I6PER7	Staphylococcus_phage	4.8e-167	100.0
AWQ90718.1\|712928_716129_+	peptidase M23 family protein	A0A1X9IGU9	Staphylococcus_phage	0.0e+00	99.8
AWQ92150.1\|716128_716707_+\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	4.7e-109	100.0
AWQ92632.1\|716804_716951_+\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	1.3e-20	97.9
AWQ90795.1\|716959_718048_+\|tail	prophage endopeptidase tail family protein	A0A2I6PEQ5	Staphylococcus_phage	8.8e-210	100.0
AWQ91215.1\|718391_718538_+	hypothetical protein	A0A2I6PEQ5	Staphylococcus_phage	7.3e-19	100.0
AWQ90823.1\|719349_719502_+	putative minor structural domain protein	A0A2I6PEQ9	Staphylococcus_phage	1.6e-08	100.0
AWQ90303.1\|719771_720020_+	putative major teichoic acid biosynthesis protein C	A0A2I6PEQ9	Staphylococcus_phage	2.7e-42	100.0
AWQ90640.1\|720126_720567_+	hypothetical protein	A0A2I6PEQ9	Staphylococcus_phage	1.8e-81	97.3
AWQ90393.1\|720727_722194_+	hypothetical protein	A0A2I6PES7	Staphylococcus_phage	2.5e-260	95.3
AWQ91902.1\|722193_722583_+	hypothetical protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
AWQ91969.1\|722575_722740_+	hypothetical protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
AWQ92678.1\|722785_723085_+	hypothetical protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
AWQ92739.1\|723220_723523_+\|holin	holin, SPP1 family	A0A2I6PET6	Staphylococcus_phage	7.0e-48	100.0
AWQ91848.1\|723533_724988_+	N-acetylmuramoyl-L-alanine amidase family protein	U5U7D2	Staphylococcus_phage	2.6e-289	100.0
AWQ91698.1\|725734_726571_+	glycosyl hydrolase 1 family protein	A0A0B5JD41	Pandoravirus	3.3e-23	29.6

DBSCAN-SWA_3

907420 : 960208

Staphylococcus_phage(94.29%)

capsid,head,tail,portal,protease,integrase,holin

attL 916264:916281|attR 940761:940778

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ91745.1\|907420_908164_-\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWQ91502.1\|908338_908623_+	10 kDa chaperonin	A0A221S386	uncultured_virus	4.7e-14	46.2
AWQ90464.1\|908698_910315_+	chaperonin GroL	A0A240F779	uncultured_virus	3.4e-157	54.7
AWQ92579.1\|910854_912162_-	ktr system potassium uptake protein B	NA	NA	NA	NA
AWQ91622.1\|912605_913829_-	putative succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
AWQ90932.1\|914318_915320_+	hypothetical protein	A0A2I6PDF3	Staphylococcus_phage	1.6e-35	34.3
AWQ92893.1\|915341_916358_+	gamma-hemolysin component B	A0A1X9IGW5	Staphylococcus_phage	6.7e-26	30.2
916264:916281	attL	NA	NA	NA	NA
AWQ90864.1\|916595_917420_-	sphingomyelin phosphodiesterase	A0A1P8L6H7	Staphylococcus_phage	8.9e-162	99.6
AWQ91519.1\|917476_918514_-\|integrase	integrase	Q38086	Staphylococcus_phage	2.2e-178	99.7
AWQ90686.1\|918704_919418_-	pemK-like family protein	A0A1X9H026	Staphylococcus_phage	5.0e-129	100.0
AWQ90873.1\|919496_919679_-	hypothetical protein	A0A0H3U4Z4	Staphylococcus_phage	6.9e-27	96.7
AWQ90135.1\|919749_919935_-	hypothetical protein	U5U7D6	Staphylococcus_phage	2.3e-25	100.0
AWQ90366.1\|919931_920078_-	hypothetical protein	A0A1X9H032	Staphylococcus_phage	3.3e-19	100.0
AWQ90337.1\|920151_920898_-	HIRAN domain protein	A0A1X9H037	Staphylococcus_phage	4.0e-129	100.0
AWQ90206.1\|921017_921701_-	peptidase S24-like family protein	A0A1X9H038	Staphylococcus_phage	5.5e-125	100.0
AWQ91634.1\|921936_922140_+	cro/C1-type HTH DNA-binding domain protein	A0A1X9H035	Staphylococcus_phage	8.0e-32	100.0
AWQ91228.1\|922152_922596_+	hypothetical protein	W5R971	Staphylococcus_phage	1.5e-75	100.0
AWQ92879.1\|922610_922751_+	hypothetical protein	A0A2I6PDT8	Staphylococcus_phage	1.9e-16	100.0
AWQ90644.1\|922743_922953_-	hypothetical protein	A0A2I6PDR8	Staphylococcus_phage	9.1e-31	100.0
AWQ92350.1\|923009_923759_+	phage antirepressor KilAC domain protein	B7T097	Staphylococcus_virus	3.4e-136	99.6
AWQ92153.1\|923774_923972_+	putative phi PVL orf 35-like protein	O80075	Staphylococcus_phage	3.5e-24	87.7
AWQ92694.1\|923958_924339_-	hypothetical protein	Q9T1Z5	Staphylococcus_phage	1.2e-68	100.0
AWQ91304.1\|924393_924717_+	hypothetical protein	A0A075LYF5	Staphylococcus_phage	3.0e-57	100.0
AWQ90175.1\|924969_925272_+	hypothetical protein	A0A1P8L6F8	Staphylococcus_phage	7.0e-48	100.0
AWQ91174.1\|925276_925537_+	hypothetical protein	A0A1P8L6F5	Staphylococcus_phage	5.2e-44	100.0
AWQ91868.1\|925545_925809_+	putative phage protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
AWQ91357.1\|925817_927761_+	hypothetical protein	A0A1P8L6F1	Staphylococcus_phage	0.0e+00	100.0
AWQ92067.1\|927762_928683_+	recT family protein	A0A1P8L6F6	Staphylococcus_phage	5.1e-166	100.0
AWQ91808.1\|928895_929381_+	beta-lactamase superfamily domain protein	A0A1P8L6F7	Staphylococcus_phage	9.4e-87	100.0
AWQ91292.1\|929381_929852_+	single-stranded DNA-binding family protein	A0A1P8L6D9	Staphylococcus_phage	5.7e-81	100.0
AWQ91788.1\|929881_930775_+	dnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	1.6e-140	99.3
AWQ91752.1\|930781_931000_+	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
AWQ91712.1\|931008_931413_+	endodeoxyribonuclease RusA family protein	A0A075M042	Staphylococcus_phage	8.4e-73	100.0
AWQ90969.1\|931425_931797_+	PVL ORF-50-like family protein	A0A2I6PDG3	Staphylococcus_phage	9.8e-52	92.7
AWQ92827.1\|931796_932054_+	hypothetical protein	A0A1X9H067	Staphylococcus_phage	6.3e-42	98.8
AWQ91211.1\|932056_932299_+	phage family protein	A0A2H4PQJ3	Staphylococcus_phage	1.2e-39	98.8
AWQ90422.1\|932313_932559_+	hypothetical protein	Q8SDV5	Staphylococcus_phage	1.7e-36	95.1
AWQ92328.1\|932555_933092_+	dUTPase family protein	Q9MBR0	Staphylococcus_prophage	1.6e-95	100.0
AWQ90748.1\|933245_933374_+	hypothetical protein	A0A2H4PQJ7	Staphylococcus_phage	6.2e-14	97.6
AWQ92852.1\|933370_933577_+	hypothetical protein	A0A2I6PEA2	Staphylococcus_phage	1.1e-17	94.1
AWQ91962.1\|933573_933723_+	transcriptional activator RinB family protein	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
AWQ92898.1\|933734_933923_+	hypothetical protein	D2JLD9	Staphylococcus_phage	1.4e-25	98.4
AWQ90638.1\|934031_934367_+	phage transcriptional regulator, RinA family protein	G4KNP7	Staphylococcus_phage	1.6e-61	100.0
AWQ91731.1\|934598_934898_+	HNH endonuclease family protein	A0A2I6PDH9	Staphylococcus_phage	3.5e-52	100.0
AWQ90771.1\|935028_935373_+	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
AWQ91548.1\|935369_937031_+	phage Terminase family protein	A0A075M4D3	Staphylococcus_phage	0.0e+00	100.0
AWQ91187.1\|937094_938210_+\|portal	phage portal protein, HK97 family	A0A1W6JPQ9	Staphylococcus_phage	1.1e-207	100.0
AWQ90587.1\|938250_938931_+\|protease	clp protease family protein	A0A1W6JPK0	Staphylococcus_phage	5.0e-118	100.0
AWQ90577.1\|938953_940099_+\|capsid	phage major capsid protein, HK97 family	A0A1W6JPL4	Staphylococcus_phage	7.3e-215	99.7
AWQ92091.1\|940118_940403_+	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	5.2e-45	97.9
AWQ91924.1\|940392_940677_+\|head,tail	phage gp6-like head-tail connector family protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
AWQ90326.1\|940660_941023_+\|head,tail	phage head-tail joining family protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
940761:940778	attR	NA	NA	NA	NA
AWQ90597.1\|941019_941424_+	hypothetical protein	A0A1W6JPJ1	Staphylococcus_phage	2.5e-69	100.0
AWQ90641.1\|941450_941828_+	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-66	99.2
AWQ90480.1\|941828_942473_+\|tail	phage major tail, phi13 family protein	G4KNQ7	Staphylococcus_phage	1.9e-119	99.1
AWQ91045.1\|942598_942739_+	bacterial Ig-like domain family protein	A0A2I6PDK6	Staphylococcus_phage	2.5e-16	100.0
AWQ92421.1\|942788_943139_+	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
AWQ92740.1\|943189_943327_+	hypothetical protein	A0A2I6PDX7	Staphylococcus_phage	3.4e-18	100.0
AWQ92510.1\|943383_947916_+\|tail	phage tail tape measure protein, TP901 family, core region	A0EX03	Staphylococcus_phage	0.0e+00	98.9
AWQ90818.1\|947912_949397_+\|tail	phage tail family protein	A0A2I6PDJ0	Staphylococcus_phage	4.5e-297	99.8
AWQ91603.1\|949640_953198_+	phage minor structural, N-terminal region domain protein	A0A0H3U328	Staphylococcus_phage	0.0e+00	99.7
AWQ91058.1\|953187_953340_+	hypothetical protein	D2JLG0	Staphylococcus_phage	2.0e-19	98.0
AWQ92410.1\|953386_953674_+	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
AWQ90878.1\|953797_954028_+	hypothetical protein	D2JLG2	Staphylococcus_phage	1.2e-31	100.0
AWQ91410.1\|954177_954354_+	hypothetical protein	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
AWQ92742.1\|954586_954820_+\|holin	holin, phage phi LC3 family	D2JLG4	Staphylococcus_phage	1.2e-36	100.0
AWQ91694.1\|954831_955587_+	CHAP domain protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
AWQ91909.1\|955777_956269_+	staphylokinase	A0A1X9H028	Staphylococcus_phage	9.5e-87	100.0
AWQ92156.1\|956957_957254_+	bacterial SH3 domain protein	A0A1P8L6B4	Staphylococcus_phage	1.3e-51	100.0
AWQ90490.1\|957348_957798_-	chemotaxis inhibitory protein	A0A1P8L6A8	Staphylococcus_phage	1.1e-78	100.0
AWQ92005.1\|958482_958833_+	complement inhibitor	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
AWQ91742.1\|958885_959077_-	putative membrane protein	M9NS66	Staphylococcus_phage	1.7e-23	100.0
AWQ90169.1\|960007_960208_-	phospholipase C domain protein	A0A1P8L6A7	Staphylococcus_phage	3.4e-27	100.0

DBSCAN-SWA_4

1049152 : 1150590

106

Staphylococcus_phage(85.96%)

integrase,tRNA,protease,transposase

attL 1096139:1096155|attR 1131339:1131355

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ90280.1\|1049152_1049383_-\|transposase	transposase family protein	NA	NA	NA	NA
AWQ90505.1\|1049560_1049866_-\|transposase	transposase family protein	NA	NA	NA	NA
AWQ90165.1\|1050220_1050463_-	hypothetical protein	NA	NA	NA	NA
AWQ90333.1\|1051046_1052108_+	phosphotransferase system, EIIC family protein	NA	NA	NA	NA
AWQ91543.1\|1052401_1053823_+	amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein	NA	NA	NA	NA
AWQ91596.1\|1053815_1054538_+	recF/RecN/SMC N terminal domain protein	G9BWD6	Planktothrix_phage	1.3e-36	42.7
AWQ91914.1\|1054688_1055816_+	epoxyqueuosine reductase	NA	NA	NA	NA
AWQ90689.1\|1055820_1056291_+\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
AWQ92272.1\|1056449_1057049_+	glucosamine-6-phosphate isomerase family protein	NA	NA	NA	NA
AWQ91800.1\|1057073_1057226_+	hypothetical protein	NA	NA	NA	NA
AWQ90209.1\|1057773_1058169_+	putative membrane protein	NA	NA	NA	NA
AWQ91676.1\|1058364_1059750_+	fumarate hydratase, class II	NA	NA	NA	NA
AWQ92795.1\|1060202_1061024_-	RNA pseudouridylate synthase family protein	NA	NA	NA	NA
AWQ90533.1\|1061186_1062299_+	histidine kinase family protein	NA	NA	NA	NA
AWQ90843.1\|1062320_1062944_+	response regulator	NA	NA	NA	NA
AWQ90658.1\|1063299_1063764_+	helix-turn-helix family protein	NA	NA	NA	NA
AWQ92901.1\|1063942_1065067_+	hypothetical protein	NA	NA	NA	NA
AWQ91397.1\|1065135_1065480_+	hypothetical protein	A0A1X9I5Y8	Streptococcus_phage	7.5e-06	29.7
AWQ92104.1\|1066407_1067604_+	calcineurin-like phosphoesterase family protein	NA	NA	NA	NA
AWQ92280.1\|1067593_1070530_+	AAA domain protein	NA	NA	NA	NA
AWQ91628.1\|1070526_1071468_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA
AWQ90712.1\|1071588_1072551_-	foldase protein PrsA	NA	NA	NA	NA
AWQ92530.1\|1072755_1073313_-	hypothetical protein	NA	NA	NA	NA
AWQ92715.1\|1074047_1074413_-	hypothetical protein	NA	NA	NA	NA
AWQ92701.1\|1074554_1074977_-	protein hit	NA	NA	NA	NA
AWQ91023.1\|1075110_1075851_+	ABC transporter family protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-24	29.8
AWQ91663.1\|1075939_1077067_+	bacterial ABC transporter EcsB family protein	NA	NA	NA	NA
AWQ91118.1\|1077190_1077694_-	signal transduction protein TRAP	NA	NA	NA	NA
AWQ92559.1\|1077956_1078994_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
AWQ90387.1\|1079078_1079975_+	ferrochelatase	NA	NA	NA	NA
AWQ91080.1\|1079998_1081399_+	protoporphyrinogen oxidase	NA	NA	NA	NA
AWQ92057.1\|1081721_1082276_+	serine hydrolase family protein	NA	NA	NA	NA
AWQ92110.1\|1083653_1084418_+	enterotoxin type D	A0A1X9H080	Staphylococcus_phage	2.3e-31	37.1
AWQ92912.1\|1084698_1085418_+	toxin beta-grasp domain protein	A0A1X9H080	Staphylococcus_phage	2.3e-25	35.8
AWQ90520.1\|1085452_1086181_+	toxin beta-grasp domain protein	A0A1X9H080	Staphylococcus_phage	1.1e-27	39.2
AWQ92283.1\|1086388_1086736_+	enterotoxin type B	A0A097PAT7	Streptococcus_pyogenes_phage	3.0e-10	37.9
AWQ92802.1\|1086710_1087106_+	enterotoxin type C-1	A0A097PAT7	Streptococcus_pyogenes_phage	1.5e-26	50.4
AWQ92236.1\|1087144_1087900_+	enterotoxin H	A0A075M4C7	Staphylococcus_phage	6.0e-40	41.4
AWQ90390.1\|1088182_1088959_+	enterotoxin type G	NA	NA	NA	NA
AWQ90940.1\|1089510_1090287_-	hypothetical protein	NA	NA	NA	NA
AWQ90539.1\|1090307_1090544_-	hypothetical protein	NA	NA	NA	NA
AWQ90632.1\|1090621_1091080_-	hypothetical protein	NA	NA	NA	NA
AWQ91773.1\|1091949_1092738_-	hypothetical protein	A0A2H4PQI0	Staphylococcus_phage	6.1e-144	98.1
AWQ91683.1\|1094101_1095037_+	leucotoxin LukEv	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0
AWQ91907.1\|1095038_1096022_+	leucotoxin LukDv	A0A2H4PQH7	Staphylococcus_phage	1.8e-185	99.4
1096139:1096155	attL	NA	NA	NA	NA
AWQ92907.1\|1096279_1096405_+	hypothetical protein	NA	NA	NA	NA
AWQ92365.1\|1096391_1097183_-	hypothetical protein	NA	NA	NA	NA
AWQ90197.1\|1097187_1097661_-	hypothetical protein	NA	NA	NA	NA
AWQ92348.1\|1097862_1098135_+	putative membrane protein	A0A2H4PQH0	Staphylococcus_phage	3.1e-31	83.5
AWQ91648.1\|1098338_1098458_-	hypothetical protein	NA	NA	NA	NA
AWQ90822.1\|1098607_1099189_-	hypothetical protein	A0A2H4PQH6	Staphylococcus_phage	9.6e-54	64.8
AWQ91009.1\|1100167_1100860_+\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	6.2e-124	97.0
AWQ90615.1\|1100984_1101707_+\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	3.5e-130	98.3
AWQ92416.1\|1101791_1102484_+\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	9.5e-125	98.7
AWQ92288.1\|1102604_1103324_+\|protease	serine protease SplF	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
AWQ90552.1\|1103481_1104201_+\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.9e-131	99.6
AWQ91647.1\|1104561_1106118_+	type I restriction-modification system, M subunit	A0A2H4PQP4	Staphylococcus_phage	1.6e-289	100.0
AWQ92472.1\|1106110_1107340_+	type I restriction modification DNA specificity domain protein	A0A2H4PQP5	Staphylococcus_phage	4.0e-134	64.7
AWQ90246.1\|1107736_1107868_-	hypothetical protein	NA	NA	NA	NA
AWQ92349.1\|1107914_1108292_+\|transposase	putative transposase	NA	NA	NA	NA
AWQ90579.1\|1109091_1109301_+	putative iSSdy1 transposon protein	A0A2H4PQV6	Staphylococcus_phage	4.7e-27	91.2
AWQ92029.1\|1109322_1109892_+\|integrase	integrase core domain protein	A0A2I7SC85	Paenibacillus_phage	1.3e-55	56.8
AWQ90696.1\|1110089_1110662_-	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	2.3e-23	93.1
AWQ90936.1\|1110762_1111104_-	hypothetical protein	A0A2H4PQN6	Staphylococcus_phage	1.1e-54	94.7
AWQ90819.1\|1111144_1111771_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.1e-74	79.8
AWQ92729.1\|1111845_1112841_-	hypothetical protein	A0A2H4PQN2	Staphylococcus_phage	2.6e-67	97.9
AWQ92914.1\|1112921_1113536_-	excalibur calcium-binding domain protein	A0A2H4PQM8	Staphylococcus_phage	1.1e-42	93.1
AWQ90270.1\|1113847_1114330_+	hypothetical protein	A0A2H4PQN7	Staphylococcus_phage	3.8e-80	99.3
AWQ91781.1\|1114488_1115967_+	O-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.8e-283	97.6
AWQ90318.1\|1115986_1116973_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	4.1e-182	97.0
AWQ90613.1\|1116969_1117227_-	putative membrane protein insertion efficiency factor	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AWQ92337.1\|1117286_1117766_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	3.0e-85	99.4
AWQ90405.1\|1117770_1118517_+	prolyl oligopeptidase family protein	A0A2H4PQM6	Staphylococcus_phage	1.4e-142	98.8
AWQ92866.1\|1118894_1120487_-	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AWQ92139.1\|1120858_1122055_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.3e-218	99.5
AWQ91242.1\|1122176_1122374_+	hypothetical protein	NA	NA	NA	NA
AWQ90611.1\|1122410_1123085_+	nuclease-related domain protein	A0A2H4PQQ8	Staphylococcus_phage	7.8e-124	100.0
AWQ91320.1\|1123296_1124130_+	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	7.8e-158	99.3
AWQ90997.1\|1124192_1124876_-\|transposase	transposase DDE domain protein	A0ZS58	Staphylococcus_virus	1.2e-124	96.5
AWQ91412.1\|1125314_1125479_-\|transposase	putative transposase	A0A146ICT8	Staphylococcus_phage	2.9e-24	98.1
AWQ90479.1\|1126126_1126480_-	crcB-like family protein	A0A2H4PQQ7	Staphylococcus_phage	3.8e-21	94.0
AWQ92372.1\|1126476_1126842_-	crcB-like family protein	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AWQ91864.1\|1127088_1127238_-	putative membrane protein	NA	NA	NA	NA
AWQ90867.1\|1127650_1128364_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AWQ92215.1\|1128803_1129439_-\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWQ90235.1\|1129734_1130178_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
AWQ91007.1\|1130164_1130308_-	hypothetical protein	NA	NA	NA	NA
AWQ90793.1\|1130720_1131191_-	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	8.8e-82	98.1
AWQ91530.1\|1131389_1131614_+	hypothetical protein	NA	NA	NA	NA
1131339:1131355	attR	NA	NA	NA	NA
AWQ92473.1\|1131889_1132744_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AWQ90345.1\|1132830_1134123_-	arsenite/antimonite efflux pump membrane family protein	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
AWQ92192.1\|1134959_1136462_+	FAD-NAD(P)-binding family protein	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
AWQ90995.1\|1136942_1137986_+	riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	5.3e-196	98.8
AWQ92284.1\|1137992_1138625_+	riboflavin synthase, alpha subunit	A0A2H4PQS5	Staphylococcus_phage	5.5e-111	98.6
AWQ90899.1\|1138635_1139817_+	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	5.6e-226	99.5
AWQ91077.1\|1139829_1140294_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-70	100.0
AWQ91886.1\|1140415_1141417_-	proline dehydrogenase family protein	A0A2H4PQT6	Staphylococcus_phage	2.6e-184	99.4
AWQ90222.1\|1141649_1142477_+	alpha/beta hydrolase fold family protein	NA	NA	NA	NA
AWQ92297.1\|1142706_1143129_+\|transposase	helix-turn-helix domain of transposase ISL3 family protein	NA	NA	NA	NA
AWQ90412.1\|1143137_1143362_+\|transposase	transposase family protein	NA	NA	NA	NA
AWQ92251.1\|1143686_1143917_+\|transposase	transposase family protein	NA	NA	NA	NA
AWQ92466.1\|1144556_1144958_+	HTH-type transcriptional regulator rot	NA	NA	NA	NA
AWQ92886.1\|1145080_1145644_-	rRNA methylase family protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AWQ92015.1\|1145640_1146594_-	radical SAM superfamily protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AWQ91296.1\|1146742_1147885_+	sugar (and other) transporter family protein	A0A2H4PQR6	Staphylococcus_phage	2.7e-209	99.7
AWQ90649.1\|1148175_1150590_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.5

DBSCAN-SWA_5

1432495 : 1483117

Staphylococcus_phage(90.0%)

capsid,head,tail,portal,protease,integrase,holin,terminase

attL 1433256:1433273|attR 1480199:1480216

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ90553.1\|1432495_1434247_+	sensor protein SrrB	A0A1V0SGX0	Hokovirus	2.2e-21	33.2
1433256:1433273	attL	NA	NA	NA	NA
AWQ92325.1\|1434313_1434448_+	hypothetical protein	NA	NA	NA	NA
AWQ91732.1\|1434490_1435417_+	hypothetical protein	NA	NA	NA	NA
AWQ90141.1\|1435409_1435553_+	hypothetical protein	NA	NA	NA	NA
AWQ91899.1\|1436282_1437437_+	hypothetical protein	B5WZK7	Staphylococcus_phage	9.3e-117	100.0
AWQ92190.1\|1437479_1438685_-\|integrase	phage integrase family protein	A0A2I6PEN0	Staphylococcus_phage	2.9e-222	99.8
AWQ91036.1\|1438810_1439425_+	hypothetical protein	M9QRQ8	Staphylococcus_phage	2.5e-105	99.5
AWQ91996.1\|1439421_1439547_-	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	3.3e-12	100.0
AWQ91436.1\|1439604_1439787_-	hypothetical protein	A0A2I6PDR4	Staphylococcus_phage	5.3e-27	100.0
AWQ91013.1\|1439882_1440803_-	exonuclease family protein	B5WZL1	Staphylococcus_phage	2.5e-173	100.0
AWQ92009.1\|1440818_1441433_-	helix-turn-helix family protein	B5WZL2	Staphylococcus_phage	9.0e-111	100.0
AWQ90650.1\|1441604_1441832_+	hypothetical protein	B5WZL3	Staphylococcus_phage	3.3e-34	100.0
AWQ90853.1\|1441857_1442022_+	BRO family, N-terminal domain protein	B5WZL4	Staphylococcus_phage	3.2e-23	98.1
AWQ92605.1\|1442077_1442413_+	phage antirepressor KilAC domain protein	M1RZB2	Staphylococcus_phage	4.1e-57	100.0
AWQ91485.1\|1442428_1442647_+	hypothetical protein	B5WZL5	Staphylococcus_phage	7.8e-33	100.0
AWQ91495.1\|1442910_1443048_-	putative phage protein	A0A2I6PF07	Staphylococcus_phage	1.9e-16	97.8
AWQ91986.1\|1443570_1443834_+	homeo-like domain protein	A7TWG0	Staphylococcus_phage	6.3e-45	98.9
AWQ92616.1\|1444086_1444410_+	hypothetical protein	A0A2I6PE70	Staphylococcus_phage	6.5e-52	100.0
AWQ90625.1\|1444424_1444787_+	hypothetical protein	A0A2I6PEM7	Staphylococcus_phage	1.9e-55	99.2
AWQ91462.1\|1444783_1445956_+	hypothetical protein	B5WZM3	Staphylococcus_phage	2.3e-219	100.0
AWQ91728.1\|1445973_1446096_+	hypothetical protein	NA	NA	NA	NA
AWQ91955.1\|1446056_1446206_+	hypothetical protein	A0A2I6PEP8	Staphylococcus_phage	8.8e-12	86.7
AWQ91143.1\|1446862_1446988_+	hypothetical protein	A0A2I6PEL4	Staphylococcus_phage	3.9e-13	92.5
AWQ90637.1\|1447116_1447935_+	DNA polymerase A family protein	A0A2I6PEL4	Staphylococcus_phage	1.8e-151	100.0
AWQ91178.1\|1448157_1448538_+	putative dNA polymerase bacteriophage-type	A0A2I6PEL4	Staphylococcus_phage	2.2e-67	100.0
AWQ91020.1\|1448550_1448703_+	hypothetical protein	A0A2I6PEM8	Staphylococcus_phage	9.9e-19	100.0
AWQ92109.1\|1448734_1449136_+	PVL ORF-50-like family protein	A0A2I6PEL5	Staphylococcus_phage	3.6e-68	99.2
AWQ92619.1\|1449135_1449249_+	hypothetical protein	A0A2I6PEN5	Staphylococcus_phage	4.3e-11	83.8
AWQ90247.1\|1449394_1449637_+	phage family protein	A0A1P8L6E3	Staphylococcus_phage	3.0e-41	100.0
AWQ92095.1\|1449700_1449844_+	hypothetical protein	A0A2I6PDH2	Staphylococcus_phage	2.9e-20	97.8
AWQ91912.1\|1449932_1450148_+	yopX family protein	A0A2I6PDH2	Staphylococcus_phage	3.4e-33	100.0
AWQ90201.1\|1450144_1450510_+	acetyltransferase family protein	A1KX82	Staphylococcus_virus	4.2e-63	100.0
AWQ91488.1\|1450595_1450757_+	hypothetical protein	A0A2I6PDI5	Staphylococcus_phage	1.1e-20	96.2
AWQ91569.1\|1450779_1450914_+	hypothetical protein	A1KX84	Staphylococcus_virus	3.4e-15	100.0
AWQ92022.1\|1450906_1451443_+	dUTPase family protein	A1KX85	Staphylococcus_virus	3.3e-93	98.3
AWQ90990.1\|1451479_1451686_+	hypothetical protein	S4V684	Staphylococcus_phage	7.6e-30	100.0
AWQ91086.1\|1451769_1451886_+	hypothetical protein	A7TWH9	Staphylococcus_phage	1.9e-14	100.0
AWQ91251.1\|1452106_1452493_+	hypothetical protein	A7TWI1	Staphylococcus_phage	1.0e-64	100.0
AWQ90510.1\|1452489_1452660_+	transcriptional activator RinB family protein	A0A2I6PEM5	Staphylococcus_phage	5.7e-15	100.0
AWQ90874.1\|1452777_1452909_+	hypothetical protein	A0A2I6PEP5	Staphylococcus_phage	3.0e-16	100.0
AWQ92855.1\|1453196_1453946_+	hypothetical protein	A0A2I6PEP4	Staphylococcus_phage	6.4e-135	97.1
AWQ90982.1\|1454256_1454535_+	virulence-associated E domain protein	A0A2I6PEP4	Staphylococcus_phage	8.1e-35	97.3
AWQ91783.1\|1454581_1454851_+	virulence-associated E family protein	A0A2I6PEP4	Staphylococcus_phage	3.9e-34	85.1
AWQ90409.1\|1454832_1455633_+	virulence-associated E family protein	A0A2I6PEP4	Staphylococcus_phage	1.1e-153	100.0
AWQ91289.1\|1455656_1455776_-	hypothetical protein	Q4ZCF9	Staphylococcus_virus	3.3e-14	92.3
AWQ90527.1\|1455973_1456264_+	VRR-NUC domain protein	U5U7A3	Staphylococcus_phage	4.9e-51	100.0
AWQ92228.1\|1456253_1457612_+	SNF2 family N-terminal domain protein	A0A1X9IH01	Staphylococcus_phage	1.6e-261	100.0
AWQ91972.1\|1457624_1458062_+	phage transcriptional regulator, RinA family protein	A0A2I6PDC2	Staphylococcus_phage	4.6e-77	100.0
AWQ91821.1\|1458218_1458533_+	HNH endonuclease family protein	A0A2I6PDC4	Staphylococcus_phage	2.5e-56	100.0
AWQ91534.1\|1458661_1458967_+\|terminase	phage terminase, small subunit	A0A2I6PE27	Staphylococcus_phage	2.9e-49	100.0
AWQ92152.1\|1458956_1460648_+	phage Terminase family protein	A0A2I6PE44	Staphylococcus_phage	0.0e+00	100.0
AWQ92633.1\|1460844_1461891_+\|portal	phage portal protein, HK97 family	A0A2I6PER5	Staphylococcus_phage	3.1e-196	99.7
AWQ90887.1\|1461874_1462648_+\|protease	clp protease family protein	M1TAZ4	Staphylococcus_phage	5.1e-135	98.1
AWQ90794.1\|1462659_1463823_+\|capsid	phage major capsid protein, HK97 family	M9QQM0	Staphylococcus_phage	4.2e-218	100.0
AWQ91991.1\|1463891_1464170_+\|head,tail	phage gp6-like head-tail connector family protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-46	100.0
AWQ90332.1\|1464181_1464514_+	hypothetical protein	A0A2I6PDD6	Staphylococcus_phage	8.2e-58	99.1
AWQ91503.1\|1464510_1464912_+	hypothetical protein	A0A2I6PDD3	Staphylococcus_phage	6.2e-68	100.0
AWQ91170.1\|1464912_1465308_+	hypothetical protein	A0A2I6PDD8	Staphylococcus_phage	2.6e-66	100.0
AWQ92905.1\|1465342_1465984_+\|tail	phage major tail, phi13 family protein	A0A2I6PEP6	Staphylococcus_phage	5.0e-120	99.1
AWQ91420.1\|1466075_1466531_+	bacterial Ig-like domain family protein	A0A2I6PER6	Staphylococcus_phage	5.7e-78	100.0
AWQ91001.1\|1466588_1466939_+	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	1.1e-55	100.0
AWQ92128.1\|1466980_1467139_+	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	8.7e-18	90.4
AWQ90599.1\|1467152_1468946_+\|tail	phage tail tape measure protein, TP901 family, core region	A0A1X9IGU9	Staphylococcus_phage	2.4e-188	100.0
AWQ92823.1\|1470151_1470508_+\|tail	putative tail length tape measure domain protein	Q9B0D2	Staphylococcus_virus	2.2e-16	98.4
AWQ92908.1\|1470610_1471147_+\|tail	putative tail length tape measure domain protein	Q9B0D2	Staphylococcus_virus	5.2e-62	90.0
AWQ90461.1\|1471365_1472826_+	peptidase M23 family protein	U5U762	Staphylococcus_phage	1.9e-252	99.8
AWQ92919.1\|1472971_1473154_+\|tail	tail length tape measure domain protein	A0A2I6PF36	Staphylococcus_phage	4.2e-24	98.3
AWQ92267.1\|1473125_1473335_+	hypothetical protein	A0A2I6PER7	Staphylococcus_phage	1.7e-24	93.7
AWQ90421.1\|1473334_1474159_+\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	4.1e-159	100.0
AWQ90694.1\|1474167_1474854_+\|tail	prophage endopeptidase tail family protein	A0A2I6PEQ5	Staphylococcus_phage	3.3e-122	95.2
AWQ92644.1\|1474903_1475743_+\|tail	prophage endopeptidase tail family protein	A0A2I6PEQ5	Staphylococcus_phage	8.2e-155	100.0
AWQ91700.1\|1475742_1476033_+	putative phage protein	U5U457	Staphylococcus_phage	2.1e-49	100.0
AWQ91572.1\|1476048_1477959_+	putative minor structural protein	A0A2I6PF35	Staphylococcus_phage	0.0e+00	99.8
AWQ91985.1\|1477958_1478231_+	hypothetical protein	A0A2I6PF60	Staphylococcus_phage	1.5e-38	98.8
AWQ91546.1\|1478686_1478854_+	hypothetical protein	A0A2I6PES7	Staphylococcus_phage	1.5e-23	100.0
AWQ92296.1\|1478877_1479084_+	hypothetical protein	A0A2I6PES7	Staphylococcus_phage	9.9e-30	100.0
AWQ92707.1\|1479222_1479408_+	hypothetical protein	A0A2I6PES7	Staphylococcus_phage	9.9e-21	90.7
AWQ92835.1\|1479407_1479797_+	hypothetical protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
AWQ91941.1\|1479789_1479954_+	hypothetical protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
AWQ92115.1\|1479999_1480329_+	hypothetical protein	A0A2I6PER2	Staphylococcus_phage	6.0e-29	100.0
1480199:1480216	attR	NA	NA	NA	NA
AWQ91168.1\|1480461_1480731_+\|holin	holin, SPP1 family	A0A2I6PET6	Staphylococcus_phage	6.6e-42	98.9
AWQ92839.1\|1480741_1480858_+	putative cHAP domain protein	A0A2I6PET7	Staphylococcus_phage	7.8e-16	100.0
AWQ92457.1\|1481888_1482185_+	bacterial SH3 domain protein	U5U7D2	Staphylococcus_phage	2.3e-51	99.0
AWQ92250.1\|1482901_1483117_+	hypothetical protein	A0ZS61	Staphylococcus_virus	2.0e-25	100.0

DBSCAN-SWA_6

1960663 : 1969073

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ91874.1\|1960663_1961230_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1
AWQ92763.1\|1961232_1962261_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
AWQ91361.1\|1962253_1963738_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-45	31.7
AWQ92736.1\|1963716_1965906_-	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	3.5e-141	39.8
AWQ91545.1\|1965898_1966522_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
AWQ92571.1\|1966571_1966835_-	phosphoribosylformylglycinamidine synthase, purS protein	NA	NA	NA	NA
AWQ91031.1\|1966834_1967539_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AWQ91819.1\|1967542_1968667_-	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA
AWQ92452.1\|1968653_1969073_-	phosphoribosylaminoimidazole carboxylase, catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	1.6e-18	45.8

DBSCAN-SWA_7

2115704 : 2172620

Staphylococcus_phage(79.41%)

capsid,tail,head,portal,terminase,integrase,holin,transposase

attL 2139863:2139879|attR 2174517:2174533

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ92381.1\|2115704_2116169_-\|transposase	transposase family protein	NA	NA	NA	NA
AWQ92576.1\|2116655_2117018_-\|transposase	helix-turn-helix domain of transposase ISL3 family protein	NA	NA	NA	NA
AWQ91101.1\|2117223_2117607_-	hypothetical protein	NA	NA	NA	NA
AWQ92441.1\|2117736_2118654_-	lipoyl synthase	NA	NA	NA	NA
AWQ92924.1\|2118737_2119985_-	5'-nucleotidase, C-terminal domain protein	NA	NA	NA	NA
AWQ92016.1\|2120083_2120542_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
AWQ92079.1\|2120563_2120911_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
AWQ92259.1\|2120923_2121772_-	hypothetical protein	NA	NA	NA	NA
AWQ91457.1\|2122156_2123197_-	nitronate monooxygenase family protein	NA	NA	NA	NA
AWQ91021.1\|2123237_2124278_-	CBS domain protein	NA	NA	NA	NA
AWQ90298.1\|2124642_2124957_+	putative membrane protein	NA	NA	NA	NA
AWQ92366.1\|2125786_2125972_-	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.7e-26	100.0
AWQ91756.1\|2126154_2126283_-	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	1.1e-15	100.0
AWQ91883.1\|2126681_2127239_+	putative penicillin binding protein	A0A0F6N4L1	Staphylococcus_phage	7.4e-96	100.0
AWQ92230.1\|2127298_2128561_-	N-acetylmuramoyl-L-alanine amidase family protein	A0A0F6N3N1	Staphylococcus_phage	3.7e-252	99.8
AWQ90515.1\|2128697_2128973_-\|holin	holin, SPP1 family	A0A0F6N3M0	Staphylococcus_phage	8.6e-45	100.0
AWQ91241.1\|2129028_2129424_-	hypothetical protein	A1KXB6	Staphylococcus_virus	1.6e-68	100.0
AWQ90168.1\|2129429_2130668_-	hypothetical protein	A0A0F6N3G7	Staphylococcus_phage	1.6e-210	100.0
AWQ90888.1\|2130680_2132579_-	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	A0EX80	Staphylococcus_virus	0.0e+00	99.7
AWQ91685.1\|2132715_2133015_-	hypothetical protein	A0A0H4ITZ0	Staphylococcus_phage	7.6e-47	100.0
AWQ91607.1\|2133054_2133222_-	hypothetical protein	A0A0F6N3L7	Staphylococcus_phage	3.5e-25	98.2
AWQ92312.1\|2133231_2133609_-	hypothetical protein	A0A0F6N3G4	Staphylococcus_phage	1.5e-60	100.0
AWQ91922.1\|2133608_2135432_-	hypothetical protein	A1KX42	Staphylococcus_virus	3.9e-295	99.2
AWQ91305.1\|2135431_2137252_-	putative minor structural protein	Q4ZDD6	Staphylococcus_virus	0.0e+00	98.8
AWQ92653.1\|2137356_2139258_-\|tail	prophage endopeptidase tail family protein	I1W634	Staphylococcus_phage	0.0e+00	99.8
AWQ90952.1\|2139266_2140214_-\|tail	phage tail family protein	A0A0F6N3L4	Staphylococcus_phage	2.8e-183	100.0
2139863:2139879	attL	NA	NA	NA	NA
AWQ90530.1\|2140226_2143694_-	putative membrane protein	A0A0F6N3F9	Staphylococcus_phage	4.2e-245	100.0
AWQ90851.1\|2143710_2144055_-	hypothetical protein	A0A0F6N3F7	Staphylococcus_phage	2.5e-57	100.0
AWQ91803.1\|2144084_2144450_-	phage family protein	A0A0F6N4J9	Staphylococcus_phage	1.8e-58	99.2
AWQ90856.1\|2144511_2145093_-\|tail	phage major tail protein, TP901-1 family	A0A0F6N3L8	Staphylococcus_phage	4.9e-106	100.0
AWQ90238.1\|2145111_2145495_-	hypothetical protein	E0Y3L5	Staphylococcus_virus	3.8e-67	98.4
AWQ90309.1\|2145506_2145854_-	hypothetical protein	A0A0F6N3F5	Staphylococcus_phage	4.1e-60	100.0
AWQ92207.1\|2146152_2146485_-\|head,tail	phage gp6-like head-tail connector family protein	A0A0F6N3F4	Staphylococcus_phage	5.5e-54	100.0
AWQ91199.1\|2146493_2146781_-	hypothetical protein	S4V6D9	Staphylococcus_phage	1.4e-45	98.9
AWQ90824.1\|2146802_2147777_-\|capsid	phage major capsid protein, HK97 family	E0Y3L0	Staphylococcus_virus	2.2e-183	100.0
AWQ91878.1\|2147790_2148411_-	hypothetical protein	S4V984	Staphylococcus_phage	1.7e-69	98.5
AWQ91501.1\|2148519_2148690_-	hypothetical protein	A0A0F6N3E9	Staphylococcus_phage	1.5e-23	100.0
AWQ92743.1\|2148762_2149758_-\|head	phage head morphogenesis, SPP1 gp7 family domain protein	A0A0F6N3F1	Staphylococcus_phage	2.0e-184	100.0
AWQ91998.1\|2149764_2151303_-\|portal	phage portal protein, SPP1 family	A0A0F6N4I8	Staphylococcus_phage	2.4e-293	100.0
AWQ91866.1\|2151313_2152609_-\|terminase	phage terminase, large subunit, PBSX family	A0A0F6N3L3	Staphylococcus_phage	3.0e-257	100.0
AWQ92031.1\|2152611_2153106_-\|terminase	terminase small subunit	A0A0F6N3K6	Staphylococcus_phage	7.8e-89	100.0
AWQ91691.1\|2153293_2153716_-	phage transcriptional regulator, RinA family protein	A0A0F6N3E5	Staphylococcus_phage	1.2e-74	100.0
AWQ91166.1\|2153886_2154021_-	transcriptional activator RinB family protein	Q4ZBK0	Staphylococcus_phage	1.4e-16	100.0
AWQ90230.1\|2154052_2154289_-	hypothetical protein	Q4ZDP0	Staphylococcus_virus	2.4e-35	98.7
AWQ92025.1\|2154281_2154485_-	hypothetical protein	A0A0N9BAX5	Staphylococcus_phage	5.2e-31	100.0
AWQ90321.1\|2154481_2154676_-	hypothetical protein	A0A2I6PEC2	Staphylococcus_phage	6.0e-29	100.0
AWQ91844.1\|2154672_2154879_-	hypothetical protein	A0A0H3U2R7	Staphylococcus_phage	1.0e-18	72.1
AWQ92399.1\|2154915_2155449_-	dUTP diphosphatase family protein	A1KX16	Staphylococcus_virus	2.4e-96	99.4
AWQ92809.1\|2155441_2155612_-	hypothetical protein	A7TWH6	Staphylococcus_phage	1.5e-20	91.1
AWQ92631.1\|2155598_2155760_-	hypothetical protein	Q4ZBK5	Staphylococcus_phage	5.0e-21	98.1
AWQ91175.1\|2155845_2156211_-	acetyltransferase family protein	A0A0F6N3K4	Staphylococcus_phage	3.5e-54	100.0
AWQ90523.1\|2156225_2156468_-	phage family protein	A0A0F6N3E1	Staphylococcus_phage	1.9e-40	98.8
AWQ91673.1\|2156471_2156828_-	PVL ORF-50-like family protein	A0A0F6N3E3	Staphylococcus_phage	6.5e-61	100.0
AWQ90933.1\|2156955_2157261_-	hypothetical protein	A0A0F6N4H9	Staphylococcus_phage	1.7e-49	100.0
AWQ90719.1\|2157261_2157447_-	hypothetical protein	A0A0F6N3K7	Staphylococcus_phage	1.1e-27	100.0
AWQ90862.1\|2157451_2157856_-	hypothetical protein	A1KX76	Staphylococcus_virus	9.6e-69	100.0
AWQ90685.1\|2157865_2158087_-	hypothetical protein	A0A0H3U2V4	Staphylococcus_phage	2.2e-35	100.0
AWQ90195.1\|2158099_2158213_-	hypothetical protein	A0A2H4PQI7	Staphylococcus_phage	1.6e-13	100.0
AWQ90754.1\|2158251_2159031_-	bacterial dnaA family protein	G4KNP1	Staphylococcus_phage	3.8e-146	100.0
AWQ91332.1\|2159040_2159811_-	conserved phage family protein	G4KNP0	Staphylococcus_phage	6.4e-122	100.0
AWQ91254.1\|2159891_2160158_+	pTS system, fructose subfamily, IIA component domain protein	A0A1W6JPU7	Staphylococcus_phage	3.4e-46	100.0
AWQ92551.1\|2160296_2160971_-	hypothetical protein	R4IH15	Staphylococcus_phage	1.4e-125	96.9
AWQ92506.1\|2160984_2161413_-	single-stranded DNA-binding protein ssb	B2ZYV4	Staphylococcus_phage	3.9e-60	100.0
AWQ92357.1\|2161412_2162036_-	hypothetical protein	A0A2H4PQQ6	Staphylococcus_phage	1.4e-114	100.0
AWQ91335.1\|2162028_2162211_-	hypothetical protein	A7TWM6	Staphylococcus_phage	2.0e-26	100.0
AWQ92010.1\|2162259_2162436_-	hypothetical protein	C7F7L4	Staphylococcus_phage	3.3e-26	100.0
AWQ90487.1\|2162524_2162827_-	hypothetical protein	A0A0F6N3N3	Staphylococcus_phage	1.4e-48	100.0
AWQ90200.1\|2163074_2163293_-	hypothetical protein	A0A0F6N3I2	Staphylococcus_phage	4.3e-31	100.0
AWQ92660.1\|2163309_2163759_-	hypothetical protein	A1KWZ2	Staphylococcus_virus	3.0e-79	100.0
AWQ90559.1\|2163798_2164023_-	hypothetical protein	A0A0F6N4M2	Staphylococcus_phage	3.2e-34	100.0
AWQ91102.1\|2164023_2164791_-	phage antirepressor KilAC domain protein	A0A0F6N3N8	Staphylococcus_phage	1.1e-142	100.0
AWQ92525.1\|2164790_2164985_-	helix-turn-helix family protein	A0A0F6N3M9	Staphylococcus_phage	1.1e-25	100.0
AWQ91833.1\|2165274_2165580_+	helix-turn-helix domain protein	R4IH08	Staphylococcus_phage	4.7e-52	99.0
AWQ91709.1\|2165596_2166271_+	hypothetical protein	A0A0F6N3H6	Staphylococcus_phage	4.9e-126	100.0
AWQ92892.1\|2166298_2167024_+	short C-terminal domain protein	A0A0F6N4L7	Staphylococcus_phage	9.9e-125	100.0
AWQ90844.1\|2167055_2167988_+	putative phage protein	A0EWN8	Staphylococcus_virus	3.9e-174	100.0
AWQ90690.1\|2167967_2168147_-	putative excisionase	A0EWN7	Staphylococcus_virus	8.3e-25	100.0
AWQ91406.1\|2168343_2169309_+\|integrase	phage integrase family protein	A1KWY3	Staphylococcus_virus	6.7e-185	99.7
AWQ90229.1\|2169376_2170774_-	feS assembly protein SufB	NA	NA	NA	NA
AWQ91814.1\|2170924_2171389_-	SUF system FeS assembly protein, NifU family	NA	NA	NA	NA
AWQ91437.1\|2171378_2172620_-	putative cysteine desulfurase	Q2XUY6	environmental_halophage	8.2e-111	44.8
2174517:2174533	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2258108 : 2272749

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ92294.1\|2258108_2258870_-	ABC transporter family protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.5e-18	31.6
AWQ91043.1\|2258866_2259823_-	fecCD transport family protein	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AWQ90929.1\|2259809_2260781_-	fecCD transport family protein	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
AWQ90551.1\|2261155_2262127_-	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AWQ92121.1\|2262244_2264341_-	ribonucleoside-diphosphate reductase, alpha subunit	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AWQ90189.1\|2264312_2264615_-	nrdI protein	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-39	76.8
AWQ90224.1\|2265511_2266378_+	eamA-like transporter family protein	NA	NA	NA	NA
AWQ91643.1\|2266397_2266898_+	7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AWQ90339.1\|2267238_2268744_+	H+ symporter family protein	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AWQ90213.1\|2269013_2269931_+	putative lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
AWQ90743.1\|2270809_2271352_-	putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AWQ90334.1\|2271690_2272749_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7

DBSCAN-SWA_9

2284720 : 2292541

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ91600.1\|2284720_2285872_-	chorismate binding enzyme family protein	S4VNU7	Pandoravirus	6.0e-23	35.7
AWQ90666.1\|2285855_2286323_-	glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein	A0A0P0IKJ1	Acinetobacter_phage	2.3e-29	43.2
AWQ91017.1\|2286799_2287468_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AWQ92661.1\|2287469_2287889_+	queuosine biosynthesis protein QueD	S4U060	uncultured_phage	4.9e-07	28.7
AWQ91635.1\|2287892_2288606_+	7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AWQ91386.1\|2288704_2289289_+	putative membrane protein	NA	NA	NA	NA
AWQ90998.1\|2289568_2290009_+	electron transfer DM13 family protein	NA	NA	NA	NA
AWQ91966.1\|2290351_2290825_+	doxX family protein	NA	NA	NA	NA
AWQ92333.1\|2290799_2291486_+	response regulator	NA	NA	NA	NA
AWQ92425.1\|2291485_2292541_+	histidine protein kinase SaeS	A0A1V0SGX0	Hokovirus	3.6e-14	29.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029658

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection