CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP029448	Serratia marcescens strain CAV1761 plasmid pCAV1761-205, complete sequence	0 crisprs	RT,csa3	2
CP029449	Serratia marcescens strain CAV1761 chromosome, complete genome	0 crisprs	DEDDh,cas3,WYL,csa3,DinG,PD-DExK	9
CP029445	Serratia marcescens strain CAV1761 plasmid pCAV1761-6393, complete sequence	0 crisprs	NA	0
CP029446	Serratia marcescens strain CAV1761 plasmid pKPC_CAV1761, complete sequence	0 crisprs	NA	1
CP029447	Serratia marcescens strain CAV1761 plasmid pCAV1761-73, complete sequence	0 crisprs	NA	0
CP029444	Serratia marcescens strain CAV1761 plasmid pCAV1761-3223, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

35251 : 76934

Escherichia_phage(28.57%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWL66385.1\|35251_36490_+\|transposase	IS110 family transposase	A0A0U3ULR1	Bacillus_phage	4.3e-11	23.1
AWL66536.1\|36965_37538_+	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
AWL66386.1\|37737_38661_+	cation transporter	NA	NA	NA	NA
AWL66387.1\|39016_39322_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
AWL66388.1\|41850_42030_-	hypothetical protein	NA	NA	NA	NA
AWL66389.1\|43411_44640_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	3.5e-170	95.7
AWL66390.1\|44983_45586_-	hypothetical protein	NA	NA	NA	NA
AWL66391.1\|45814_46954_+	AraC family transcriptional regulator	NA	NA	NA	NA
AWL66392.1\|47000_47705_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AWL66393.1\|48134_48416_-	XRE family transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.3e-08	38.0
AWL66394.1\|48396_48726_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	2.4e-09	44.2
AWL66395.1\|49589_50006_-	hypothetical protein	NA	NA	NA	NA
AWL66537.1\|50162_53150_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	9.3e-294	53.3
AWL66396.1\|54585_56109_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	7.0e-88	38.7
AWL66397.1\|56098_57325_+	restriction endonuclease subunit S	NA	NA	NA	NA
AWL66398.1\|57321_58005_+	YecA family protein	NA	NA	NA	NA
AWL66538.1\|58027_59812_+	cold shock domain-containing protein	NA	NA	NA	NA
AWL66399.1\|59881_63166_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	3.3e-66	27.4
AWL66400.1\|63162_63918_+	M48 family peptidase	NA	NA	NA	NA
AWL66401.1\|66518_66797_+	replication protein	NA	NA	NA	NA
AWL66539.1\|67012_67090_+	RepA leader peptide Tap	NA	NA	NA	NA
AWL66402.1\|67082_67940_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
AWL66403.1\|68244_68433_-	hypothetical protein	NA	NA	NA	NA
AWL66404.1\|68577_68826_-	hypothetical protein	NA	NA	NA	NA
AWL66405.1\|69307_69592_+	hypothetical protein	A0A1S6L2Z2	Erwinia_phage	1.5e-07	43.2
AWL66406.1\|69601_70030_+	hypothetical protein	NA	NA	NA	NA
AWL66407.1\|70497_71103_-	DNA resolvase	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3
AWL66408.1\|71197_74095_+\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	2.5e-182	37.8
AWL66409.1\|74202_74964_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AWL66410.1\|74984_75845_-	class A extended-spectrum beta-lactamase SHV-30	A0A077SL40	Escherichia_phage	1.7e-155	99.3
AWL66411.1\|76010_76934_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	9.6e-173	97.4

DBSCAN-SWA_2

83268 : 136398

Bacillus_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWL66421.1\|83268_86235_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.8
AWL66422.1\|86313_87318_+\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
AWL66541.1\|88583_88670_+	ABC transporter	NA	NA	NA	NA
AWL66423.1\|88708_89689_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	2.3e-185	99.1
AWL66424.1\|90571_91691_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	5.1e-51	42.4
AWL66425.1\|91701_92142_-	hypothetical protein	NA	NA	NA	NA
AWL66426.1\|94583_95507_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	9.6e-173	97.4
AWL66427.1\|95531_96224_+	hypothetical protein	NA	NA	NA	NA
AWL66428.1\|97242_100140_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	2.5e-182	37.8
AWL66429.1\|100234_100840_+	DNA resolvase	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3
AWL66430.1\|101021_101417_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AWL66542.1\|101465_102812_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
AWL66431.1\|103020_103275_-	hypothetical protein	NA	NA	NA	NA
AWL66432.1\|103350_103608_-	hypothetical protein	NA	NA	NA	NA
AWL66433.1\|103656_103860_-	hemolysin expression modulator Hha	NA	NA	NA	NA
AWL66434.1\|103893_104262_-	hypothetical protein	NA	NA	NA	NA
AWL66435.1\|104305_104800_-	DNA-binding protein	NA	NA	NA	NA
AWL66436.1\|104830_105397_-	hypothetical protein	NA	NA	NA	NA
AWL66437.1\|105393_105657_-	hypothetical protein	NA	NA	NA	NA
AWL66438.1\|105970_106231_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
AWL66439.1\|106217_106514_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AWL66440.1\|106693_107128_-	copper-binding protein	NA	NA	NA	NA
AWL66441.1\|107343_108744_-	sensor histidine kinase	W8CYF6	Bacillus_phage	2.4e-18	26.6
AWL66442.1\|108740_109421_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	8.7e-30	34.4
AWL66443.1\|109475_110405_-	copper resistance protein D	NA	NA	NA	NA
AWL66444.1\|110409_110790_-	copper resistance system chaperone PcoC	NA	NA	NA	NA
AWL66543.1\|110829_111726_-	copper resistance protein B	NA	NA	NA	NA
AWL66445.1\|111725_113543_-	multicopper oxidase PcoA	NA	NA	NA	NA
AWL66446.1\|113777_114227_+	copper resistance protein	NA	NA	NA	NA
AWL66447.1\|114515_115253_+	peptidase M23	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
AWL66448.1\|115286_115484_-	DUF2933 domain-containing protein	NA	NA	NA	NA
AWL66449.1\|115524_117966_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	4.9e-83	34.9
AWL66450.1\|118093_118534_-	hypothetical protein	NA	NA	NA	NA
AWL66451.1\|118620_121767_-	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	3.6e-62	22.7
AWL66452.1\|121777_123070_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AWL66453.1\|123183_123537_-	copper ABC transporter substrate-binding protein	NA	NA	NA	NA
AWL66454.1\|123565_124951_-	Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA	NA	NA	NA
AWL66455.1\|125140_125821_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.6e-31	35.6
AWL66456.1\|125813_127289_+	Cu(+)/Ag(+) sensor histidine kinase	W8CYF6	Bacillus_phage	1.1e-26	28.2
AWL66457.1\|127539_127971_+	silver-binding protein SilE	NA	NA	NA	NA
AWL66458.1\|128114_128456_+	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	8.5e-18	55.2
AWL66459.1\|128516_129663_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.8e-148	92.6
AWL66460.1\|129837_130488_+	HAD-IB family hydrolase	NA	NA	NA	NA
AWL66461.1\|130515_131757_-	tellurium resistance protein TerF	A0A2D1GNA9	Pseudoalteromonas_phage	5.3e-09	26.7
AWL66462.1\|131844_132420_-	TerD family protein	K4JRX3	Caulobacter_phage	3.3e-30	40.8
AWL66463.1\|132500_133079_-	TerD family protein	A0A2P1N0L4	Streptomyces_phage	1.5e-06	40.0
AWL66464.1\|133117_134158_-	tellurium resistance protein TerC	K7QKE8	Escherichia_phage	5.5e-76	47.1
AWL66465.1\|134181_134637_-	Tellurium resistance protein TerB	NA	NA	NA	NA
AWL66466.1\|134659_135817_-	tellurium resistance protein TerA	NA	NA	NA	NA
AWL66467.1\|135813_136398_-	tellurium resistance protein TerZ	K4JRX3	Caulobacter_phage	9.1e-12	29.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP029449

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

309007 : 374461

Tupanvirus(20.0%)

tRNA,coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWL66828.1\|309007_311395_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	3.1e-05	24.0
AWL66829.1\|311409_312393_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	2.2e-34	38.9
AWL66830.1\|312417_312735_+	hypothetical protein	NA	NA	NA	NA
AWL66831.1\|312816_313173_-	50S ribosomal protein L20	NA	NA	NA	NA
AWL66832.1\|313216_313414_-	50S ribosomal protein L35	NA	NA	NA	NA
AWL66833.1\|313512_314064_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.6e-16	33.7
AWL66834.1\|314067_315996_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.5e-132	37.7
AWL66835.1\|318669_319293_-	hypothetical protein	NA	NA	NA	NA
AWL66836.1\|319839_320526_+	stress protection protein MarC	NA	NA	NA	NA
AWL66837.1\|320563_321697_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AWL66838.1\|321848_323132_-	HAAAP family serine/threonine permease	NA	NA	NA	NA
AWL66839.1\|323389_324727_-	cytochrome c	NA	NA	NA	NA
AWL66840.1\|324739_326521_-	GMC family oxidoreductase	NA	NA	NA	NA
AWL66841.1\|326523_327249_-	gluconate 2-dehydrogenase subunit 3 family protein	NA	NA	NA	NA
AWL66842.1\|327556_328222_-	lytic transglycosylase	I6ZXX9	Escherichia_phage	2.9e-06	44.4
AWL66843.1\|328331_328631_+	endoribonuclease GhoS	NA	NA	NA	NA
AWL66844.1\|328762_329707_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
AWL66845.1\|329703_330594_+	manganese/iron ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.3e-11	27.1
AWL66846.1\|330593_331454_+	metal ABC transporter permease	NA	NA	NA	NA
AWL66847.1\|331453_332308_+	metal ABC transporter permease	NA	NA	NA	NA
AWL66848.1\|332545_333415_+	fructosamine kinase family protein	NA	NA	NA	NA
AWL66849.1\|333450_334011_-	hypothetical protein	NA	NA	NA	NA
AWL66850.1\|334196_335477_+\|protease	protease	NA	NA	NA	NA
AWL66851.1\|335541_336207_+	hexitol phosphatase HxpB	NA	NA	NA	NA
AWL66852.1\|336631_337180_+	metal-dependent hydrolase	A0A127AVX7	Bacillus_phage	1.1e-06	35.8
AWL66853.1\|337355_338753_+	L-cystine transporter	NA	NA	NA	NA
AWL66854.1\|338817_339627_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA
AWL66855.1\|339636_340740_-	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA
AWL66856.1\|340895_341615_+	phosphonate utilization transcriptional regulator PhnR	NA	NA	NA	NA
AWL66857.1\|341789_342800_+	2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
AWL66858.1\|342796_343933_+	2-aminoethylphosphonate ABC transport system ATP-binding subunit PhnT	G3M9Y6	Bacillus_virus	5.7e-26	33.7
AWL66859.1\|343934_344798_+	2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA
AWL66860.1\|344800_345604_+	phosphonate ABC transporter permease	NA	NA	NA	NA
AWL66861.1\|345650_346442_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
AWL66862.1\|346672_348067_+	MFS transporter	NA	NA	NA	NA
AWL66863.1\|348147_349317_-	hypothetical protein	NA	NA	NA	NA
AWL66864.1\|349319_350519_-	hypothetical protein	NA	NA	NA	NA
AWL66865.1\|351392_352271_-\|protease	protease HtpX	NA	NA	NA	NA
AWL66866.1\|352640_353732_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AWL66867.1\|353734_354775_+	iron ABC transporter permease	NA	NA	NA	NA
AWL66868.1\|354771_355557_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	8.8e-10	27.9
AWL66869.1\|355544_356342_+	nicotianamine synthase	NA	NA	NA	NA
AWL66870.1\|356334_357642_+	DUF2338 domain-containing protein	NA	NA	NA	NA
AWL66871.1\|357638_358484_+	EamA/RhaT family transporter	NA	NA	NA	NA
AWL66872.1\|358551_360600_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	2.6e-85	33.9
AWL66873.1\|360619_361330_-	RNA chaperone ProQ	NA	NA	NA	NA
AWL66874.1\|361426_361924_-	GAF domain-containing protein	NA	NA	NA	NA
AWL71367.1\|362179_363427_+	paraquat-inducible protein A	NA	NA	NA	NA
AWL71368.1\|363395_366026_+	MCE family protein	NA	NA	NA	NA
AWL66875.1\|366128_367565_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AWL66876.1\|367837_368374_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
AWL66877.1\|368647_369184_+\|coat	spore coat protein	NA	NA	NA	NA
AWL66878.1\|369186_369690_+	SCPU domain-containing protein	NA	NA	NA	NA
AWL66879.1\|369683_370226_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
AWL66880.1\|370247_371015_+	molecular chaperone	NA	NA	NA	NA
AWL71369.1\|371166_373509_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
AWL66881.1\|373528_374461_+\|coat	spore coat protein	NA	NA	NA	NA

DBSCAN-SWA_2

1387658 : 1393360

Clostridium_botulinum_C_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWL67785.1\|1387658_1388726_+	diguanylate cyclase AdrA	A0A127AWB9	Bacillus_phage	1.1e-15	32.7
AWL67786.1\|1388727_1389156_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AWL67787.1\|1389380_1389764_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	5.2e-24	54.2
AWL67788.1\|1390053_1390650_+	TetR family transcriptional regulator	NA	NA	NA	NA
AWL67789.1\|1390656_1391847_+	MFS transporter	S4TR35	Salmonella_phage	1.9e-27	29.2
AWL71415.1\|1391920_1392358_-\|transposase	IS200/IS605 family transposase	Q331U4	Clostridium_botulinum_C_phage	1.8e-20	39.2
AWL71416.1\|1392543_1392981_-\|transposase	IS200/IS605 family transposase	Q331U4	Clostridium_botulinum_C_phage	1.8e-20	39.2
AWL67790.1\|1393150_1393360_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.7e-21	78.1

DBSCAN-SWA_3

3171478 : 3235616

uncultured_Caudovirales_phage(20.0%)

transposase,tRNA,tail,integrase

attL 3220302:3220338|attR 3237857:3237893

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWL69296.1\|3171478_3172489_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
AWL69297.1\|3172646_3172865_+	envelope stress response protein PspG	NA	NA	NA	NA
AWL69298.1\|3173165_3174149_-	quinone oxidoreductase	NA	NA	NA	NA
AWL69299.1\|3174316_3175741_+	replicative DNA helicase DnaB	A0A1B0VG30	Salmonella_phage	6.2e-195	77.0
AWL69300.1\|3175758_3176838_+	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	2.2e-27	27.9
AWL69301.1\|3176882_3177650_-	ArtI protein	NA	NA	NA	NA
AWL69302.1\|3177865_3178339_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
AWL69303.1\|3178416_3179610_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
AWL69304.1\|3179736_3180153_+	thiamine phosphate synthase	NA	NA	NA	NA
AWL69305.1\|3180157_3180511_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
AWL69306.1\|3180662_3181220_+	maltose O-acetyltransferase	NA	NA	NA	NA
AWL69307.1\|3181250_3182303_-	NAD(P)-dependent alcohol dehydrogenase	A0A2K9L339	Tupanvirus	1.4e-79	43.8
AWL69308.1\|3182532_3185361_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	7.4e-309	55.2
AWL69309.1\|3185638_3186169_+	ssDNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	1.1e-56	85.8
AWL71504.1\|3186254_3186692_-\|transposase	IS200/IS605 family transposase	Q331U4	Clostridium_botulinum_C_phage	1.8e-20	39.2
AWL69310.1\|3186855_3187605_-	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
AWL69311.1\|3187752_3188013_-	DUF1471 domain-containing protein	NA	NA	NA	NA
AWL69312.1\|3188209_3188653_+	hypothetical protein	NA	NA	NA	NA
AWL69313.1\|3188649_3189318_+	glutathione S-transferase	NA	NA	NA	NA
AWL69314.1\|3189365_3189773_+	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA
AWL69315.1\|3190105_3191467_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	2.7e-163	74.5
AWL69316.1\|3191664_3193314_+	Na+/H+ antiporter	NA	NA	NA	NA
AWL69317.1\|3193388_3194276_-	LysR family transcriptional regulator	NA	NA	NA	NA
AWL69318.1\|3194415_3194838_+	murein hydrolase regulator LrgA	NA	NA	NA	NA
AWL69319.1\|3194830_3195520_+	LrgB family protein	NA	NA	NA	NA
AWL69320.1\|3196131_3213984_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	7.1e-163	26.5
AWL69321.1\|3214037_3215243_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
AWL71505.1\|3215351_3216047_-	hypothetical protein	A0A0R6PHX8	Moraxella_phage	7.5e-21	27.1
AWL69322.1\|3216136_3217342_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
AWL69323.1\|3217483_3218404_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	2.4e-75	52.3
AWL69324.1\|3218701_3219607_-	lipid A hydroxylase LpxO	S4VR59	Pandoravirus	8.8e-38	38.4
AWL69325.1\|3219854_3220196_+	hypothetical protein	NA	NA	NA	NA
3220302:3220338	attL	NA	NA	NA	NA
AWL69326.1\|3220511_3221738_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	2.3e-150	61.7
AWL69327.1\|3221958_3222618_+	hypothetical protein	NA	NA	NA	NA
AWL69328.1\|3222732_3223017_+	AlpA family phage regulatory protein	NA	NA	NA	NA
AWL69329.1\|3223160_3223937_+	phage antirepressor Ant	A0A0R6PHG7	Moraxella_phage	5.6e-25	54.5
AWL69330.1\|3224178_3224358_-	hypothetical protein	A0A2H4JB52	uncultured_Caudovirales_phage	3.4e-10	55.2
AWL71506.1\|3224488_3224761_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	5.5e-36	79.5
AWL69331.1\|3224750_3224951_+	hypothetical protein	NA	NA	NA	NA
AWL69332.1\|3224943_3225180_+	hypothetical protein	NA	NA	NA	NA
AWL69333.1\|3225172_3225361_+	hypothetical protein	NA	NA	NA	NA
AWL69334.1\|3225353_3225608_+	hypothetical protein	NA	NA	NA	NA
AWL69335.1\|3225604_3225943_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	4.9e-26	58.0
AWL71507.1\|3226203_3227670_+	DNA primase	Q7M2A8	Enterobacteria_phage	4.1e-125	49.7
AWL69336.1\|3228254_3229397_+	Fic family protein	A0A1V0E025	Clostridioides_phage	1.4e-08	28.9
AWL69337.1\|3229606_3230395_+	serine dehydrogenasease	NA	NA	NA	NA
AWL69338.1\|3230440_3231364_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	9.6e-173	97.4
AWL71508.1\|3231898_3232354_-	hypothetical protein	NA	NA	NA	NA
AWL69339.1\|3232547_3232808_+	hypothetical protein	NA	NA	NA	NA
AWL71509.1\|3232900_3233587_+	hypothetical protein	NA	NA	NA	NA
AWL69340.1\|3233608_3234103_+	hypothetical protein	NA	NA	NA	NA
AWL69341.1\|3234095_3234521_+	hypothetical protein	NA	NA	NA	NA
AWL69342.1\|3235085_3235616_+\|tail	tail assembly chaperone	A0A0F7LBP0	Escherichia_phage	9.7e-37	45.3
3237857:3237893	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3259668 : 3309937

uncultured_Mediterranean_phage(25.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWL69364.1\|3259668_3261114_+\|protease	metalloprotease TldD	NA	NA	NA	NA
AWL71511.1\|3261222_3262005_+	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
AWL69365.1\|3262032_3263715_-	O-antigen polymerase	NA	NA	NA	NA
AWL69366.1\|3264403_3265345_-	nucleoside hydrolase	NA	NA	NA	NA
AWL69367.1\|3265552_3265828_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
AWL69368.1\|3265824_3266169_+	hypothetical protein	NA	NA	NA	NA
AWL69369.1\|3266159_3267071_-	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
AWL69370.1\|3267385_3267589_+	protein AaeX	NA	NA	NA	NA
AWL69371.1\|3267596_3268532_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
AWL69372.1\|3268531_3270499_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
AWL69373.1\|3270778_3271246_+	ribonuclease N	NA	NA	NA	NA
AWL71512.1\|3271251_3271551_+	hypothetical protein	NA	NA	NA	NA
AWL69374.1\|3271581_3272130_-	ribosome-associated protein	NA	NA	NA	NA
AWL69375.1\|3272309_3273650_+\|protease	metalloprotease PmbA	NA	NA	NA	NA
AWL69376.1\|3273788_3274175_+	cytochrome B562	NA	NA	NA	NA
AWL69377.1\|3274179_3274962_-	AraC family transcriptional regulator	NA	NA	NA	NA
AWL69378.1\|3275245_3276700_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
AWL69379.1\|3276696_3277578_+	hypothetical protein	NA	NA	NA	NA
AWL69380.1\|3277570_3278359_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
AWL69381.1\|3278396_3278807_-	nucleoside diphosphate kinase regulator	NA	NA	NA	NA
AWL69382.1\|3279230_3279578_+	glycine dehydrogenase	NA	NA	NA	NA
AWL69383.1\|3279614_3279980_+	hypothetical protein	NA	NA	NA	NA
AWL69384.1\|3279979_3280276_+	DUF4312 domain-containing protein	NA	NA	NA	NA
AWL69385.1\|3280306_3281083_+	DUF4311 domain-containing protein	NA	NA	NA	NA
AWL69386.1\|3281091_3281745_+	DUF4310 domain-containing protein	NA	NA	NA	NA
AWL69387.1\|3281808_3282948_+	amidohydrolase/deacetylase family metallohydrolase	NA	NA	NA	NA
AWL69388.1\|3282931_3284050_+	DgaE family pyridoxal phosphate-dependent ammonia lyase	NA	NA	NA	NA
AWL69389.1\|3284046_3284787_+	oxo-acid lyase	NA	NA	NA	NA
AWL69390.1\|3284696_3284948_-	hypothetical protein	NA	NA	NA	NA
AWL69391.1\|3285199_3286414_+	lactonase family protein	NA	NA	NA	NA
AWL69392.1\|3286465_3288382_+	PRD domain-containing protein	NA	NA	NA	NA
AWL69393.1\|3288422_3288695_-	HPr family phosphocarrier protein	NA	NA	NA	NA
AWL69394.1\|3288691_3289546_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-05	30.0
AWL71513.1\|3289675_3290122_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
AWL69395.1\|3290292_3290580_-	ribosome hibernation promoting factor	NA	NA	NA	NA
AWL69396.1\|3290603_3292037_-	RNA polymerase sigma-54 factor	NA	NA	NA	NA
AWL69397.1\|3292089_3292815_-	lipopolysaccharide ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.2e-22	27.9
AWL69398.1\|3292821_3293361_-	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA
AWL69399.1\|3293329_3293908_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
AWL69400.1\|3293904_3294459_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	5.9e-61	86.0
AWL69401.1\|3294476_3295463_-	arabinose-5-phosphate isomerase KdsD	A0A2P0VNK5	Tetraselmis_virus	1.9e-38	30.8
AWL69402.1\|3295479_3296457_-	calcium/sodium antiporter	NA	NA	NA	NA
AWL69403.1\|3296761_3297577_+	phospholipid ABC transporter ATP-binding protein MlaF	G3M9Y6	Bacillus_virus	1.2e-20	31.0
AWL69404.1\|3297581_3298364_+	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA
AWL69405.1\|3298368_3298917_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
AWL69406.1\|3298931_3299561_+	phospholipid-binding protein MlaC	NA	NA	NA	NA
AWL69407.1\|3299560_3299863_+	lipid asymmetry maintenance protein MlaB	NA	NA	NA	NA
AWL69408.1\|3300003_3300258_+	BolA family transcriptional regulator	NA	NA	NA	NA
AWL69409.1\|3300313_3301573_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
AWL69410.1\|3301645_3302704_-\|protease	serine endoprotease DegS	A0A1B1IT49	uncultured_Mediterranean_phage	5.5e-23	27.5
AWL69411.1\|3302792_3304163_-\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	1.6e-19	27.8
AWL69412.1\|3304336_3304738_-	DUF1043 domain-containing protein	NA	NA	NA	NA
AWL69413.1\|3304969_3306097_+	cell division protein ZapE	NA	NA	NA	NA
AWL69414.1\|3306372_3306801_+	50S ribosomal protein L13	NA	NA	NA	NA
AWL69415.1\|3306816_3307209_+	30S ribosomal protein S9	NA	NA	NA	NA
AWL69416.1\|3307534_3308176_+	stringent starvation protein A	NA	NA	NA	NA
AWL69417.1\|3308181_3308682_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	6.2e-25	52.8
AWL69418.1\|3308731_3309937_-\|transposase	ISL3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

3661269 : 3671818

Pseudomonas_phage(16.67%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWL69720.1\|3661269_3663822_+	hypothetical protein	W6MWW8	Pseudomonas_phage	6.2e-206	44.9
AWL69721.1\|3664317_3664626_-	hypothetical protein	NA	NA	NA	NA
AWL69722.1\|3664802_3665243_-	hypothetical protein	NA	NA	NA	NA
AWL69723.1\|3665299_3666163_-	hypothetical protein	M9NYX6	Enterobacteria_phage	8.0e-105	65.3
AWL69724.1\|3666802_3667042_-	AlpA family phage regulatory protein	A0A193GYW1	Enterobacter_phage	1.2e-13	50.0
AWL69725.1\|3667755_3668718_+	abortive phage infection protein	A3QSC6	Clostridium_virus	1.3e-23	31.6
AWL69726.1\|3668745_3669177_-	hypothetical protein	A0A1W6JPI4	Morganella_phage	5.5e-46	67.4
AWL69727.1\|3669820_3671818_-\|holin	high-affinity choline transporter BetT	A0A2I7QNT1	Vibrio_phage	2.0e-21	25.4

DBSCAN-SWA_6

3869075 : 3897460

Cronobacter_phage(75.0%)

capsid,head,portal,tail,integrase,terminase,holin

attL 3868954:3869001|attR 3900661:3900708

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3868954:3869001	attL	NA	NA	NA	NA
AWL69893.1\|3869075_3870143_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.1e-163	79.9
AWL69894.1\|3870146_3870710_-	phage repressor protein	A0A218M4J1	Erwinia_phage	1.5e-32	42.3
AWL71540.1\|3870866_3871127_+	hypothetical protein	F1BUS7	Erwinia_phage	5.9e-11	46.0
AWL69895.1\|3871159_3871669_+	hypothetical protein	F1BUN6	Cronobacter_phage	2.2e-38	51.3
AWL69896.1\|3871678_3871882_+	DUF2724 domain-containing protein	NA	NA	NA	NA
AWL69897.1\|3871884_3872304_+	hypothetical protein	F1BUN5	Cronobacter_phage	1.3e-31	54.9
AWL69898.1\|3872834_3873074_+	DUF2732 domain-containing protein	A0A0F7LBR4	Escherichia_phage	5.6e-08	61.1
AWL71541.1\|3873177_3875226_+	replication endonuclease	F1BUM9	Cronobacter_phage	2.7e-260	66.8
AWL71542.1\|3875315_3875534_+	hypothetical protein	NA	NA	NA	NA
AWL69899.1\|3875504_3875831_-	transcriptional regulator	F1BUM8	Cronobacter_phage	4.4e-40	77.5
AWL69900.1\|3875827_3876880_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	3.0e-154	76.9
AWL69901.1\|3876876_3878649_-\|terminase	terminase	F1BUM5	Cronobacter_phage	1.5e-286	81.1
AWL69902.1\|3878808_3879606_+\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	1.4e-71	53.5
AWL69903.1\|3879661_3880684_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	2.5e-153	79.1
AWL69904.1\|3880687_3881389_+\|terminase	terminase	F1BUM0	Cronobacter_phage	1.3e-84	66.8
AWL69905.1\|3881485_3881938_+\|head	head completion protein	F1BUL8	Cronobacter_phage	9.7e-62	79.3
AWL69906.1\|3881934_3882438_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	2.3e-35	45.5
AWL69907.1\|3882434_3883145_+	hypothetical protein	F1BUL6	Cronobacter_phage	1.6e-82	66.5
AWL69908.1\|3883141_3884266_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	1.0e-139	66.0
AWL69909.1\|3884262_3884718_+	DUF2597 domain-containing protein	F1BUL4	Cronobacter_phage	9.2e-52	64.2
AWL69910.1\|3884727_3885030_+\|holin	holin	C7BGD7	Burkholderia_phage	7.5e-18	52.1
AWL69911.1\|3885016_3885358_+	M15 family peptidase	F1BUL3	Cronobacter_phage	2.1e-40	77.2
AWL69912.1\|3885357_3885702_+	hypothetical protein	F1BUL2	Cronobacter_phage	1.2e-24	56.8
AWL69913.1\|3885673_3885853_+	hypothetical protein	F1BUL1	Cronobacter_phage	2.5e-13	61.8
AWL69914.1\|3885849_3886119_+	hypothetical protein	A5X9I7	Aeromonas_virus	5.5e-20	58.5
AWL69915.1\|3886127_3886307_+	hypothetical protein	Q1I0Y8	Pasteurella_virus	5.4e-08	46.4
AWL69916.1\|3888837_3889185_+	DUF2590 domain-containing protein	F1BUK8	Cronobacter_phage	5.2e-31	67.7
AWL69917.1\|3889162_3890347_+	hypothetical protein	F1BUK6	Cronobacter_phage	2.4e-152	67.3
AWL69918.1\|3890339_3890945_+	hypothetical protein	F1BUK5	Cronobacter_phage	2.4e-71	69.3
AWL69919.1\|3890950_3894130_+	hypothetical protein	F1BUK3	Cronobacter_phage	4.1e-106	65.9
AWL69920.1\|3894132_3894561_+\|tail	tail assembly chaperone	B6SCW7	Bacteriophage	1.3e-23	46.3
AWL69921.1\|3894550_3895273_+	hypothetical protein	F1BUK1	Cronobacter_phage	2.9e-39	39.8
AWL69922.1\|3895247_3895808_+	hypothetical protein	F1BUJ9	Cronobacter_phage	1.3e-50	58.8
AWL69923.1\|3895804_3897460_+	hypothetical protein	F1BUJ7	Cronobacter_phage	4.7e-170	54.1
3900661:3900708	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4361762 : 4403734

Enterobacteria_phage(32.0%)

transposase,integrase,tail,holin

attL 4383810:4383869|attR 4402766:4403812

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWL70326.1\|4361762_4362686_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	9.6e-173	97.4
AWL70327.1\|4362952_4364083_+	porin OmpC	Q1MVN1	Enterobacteria_phage	5.7e-103	53.3
AWL70328.1\|4364232_4364649_+	glyoxalase	NA	NA	NA	NA
AWL70329.1\|4364642_4365221_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AWL70330.1\|4365328_4365796_+	DUF1348 domain-containing protein	NA	NA	NA	NA
AWL70331.1\|4365923_4366253_+	osmotically-inducible lipoprotein OsmE	NA	NA	NA	NA
AWL70332.1\|4366679_4367357_-	S26 family signal peptidase	K7PK07	Enterobacteria_phage	6.0e-07	45.7
AWL71568.1\|4367566_4367929_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	1.6e-38	64.6
AWL70333.1\|4368943_4369264_+\|holin	holin	F1C5D1	Cronobacter_phage	2.5e-40	81.0
AWL70334.1\|4369250_4369691_+	lysozyme	A0A0M5M782	Salmonella_phage	8.9e-44	62.3
AWL70335.1\|4369748_4370138_+	hypothetical protein	Q7Y405	Yersinia_phage	1.1e-24	42.1
AWL70336.1\|4370134_4370527_+	hypothetical protein	Q7Y404	Yersinia_phage	2.7e-20	46.8
AWL70337.1\|4370567_4371023_+\|tail	phage tail protein	Q6UAX0	Klebsiella_phage	1.2e-56	74.8
AWL70338.1\|4371146_4371512_+\|tail	phage tail protein	Q7Y401	Yersinia_phage	6.5e-24	45.0
AWL70339.1\|4371529_4371751_+	hypothetical protein	Q6UAW9	Klebsiella_phage	1.0e-11	47.9
AWL70340.1\|4371743_4374074_+\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	2.9e-16	43.1
AWL70341.1\|4374073_4374412_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.1e-33	60.0
AWL71569.1\|4374425_4375175_+\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	4.5e-96	64.9
AWL70342.1\|4375184_4375889_+	peptidase P60	K7PGR2	Enterobacteria_phage	1.5e-106	74.5
AWL70343.1\|4375926_4376277_+	hypothetical protein	NA	NA	NA	NA
AWL70344.1\|4376319_4376946_+\|tail	tail assembly protein	F1C572	Cronobacter_phage	2.6e-49	51.5
AWL70345.1\|4376999_4380167_+	host specificity protein J	F1C571	Cronobacter_phage	0.0e+00	66.3
AWL70346.1\|4380503_4381151_+	hypothetical protein	G8C7R6	Escherichia_phage	1.1e-39	37.1
AWL70347.1\|4381244_4382531_+\|tail	tail fiber domain-containing protein	S4TSP4	Salmonella_phage	1.1e-46	47.3
AWL70348.1\|4382534_4383809_+	hypothetical protein	Q7Y3Z0	Yersinia_phage	1.0e-23	51.3
4383810:4383869	attL	NA	NA	NA	NA
AWL70349.1\|4383854_4384778_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	9.6e-173	97.4
AWL70350.1\|4385436_4385679_-	DinI family protein	K7PKR6	Enterobacteria_phage	2.6e-29	82.3
AWL70351.1\|4386547_4387201_+	XRE family transcriptional regulator	NA	NA	NA	NA
AWL70352.1\|4387201_4387690_+	hypothetical protein	NA	NA	NA	NA
AWL70353.1\|4387682_4388414_-	hypothetical protein	NA	NA	NA	NA
AWL70354.1\|4388431_4389094_-	VUT family protein	NA	NA	NA	NA
AWL70355.1\|4389433_4390033_-	DNA-binding response regulator	NA	NA	NA	NA
AWL70356.1\|4390004_4391759_-	sensor histidine kinase	NA	NA	NA	NA
AWL70357.1\|4391955_4392693_+	tetrathionate reductase subunit TtrB	NA	NA	NA	NA
AWL70358.1\|4392689_4393715_+	tetrathionate reductase subunit TtrC	NA	NA	NA	NA
AWL70359.1\|4393707_4396779_+	tetrathionate reductase subunit TtrA	A0A077SK27	Escherichia_phage	3.8e-08	27.1
AWL70360.1\|4397659_4398568_+	DUF4760 domain-containing protein	A0A1B5FPC5	Escherichia_phage	3.6e-23	31.2
AWL71570.1\|4398774_4399626_+	hypothetical protein	NA	NA	NA	NA
AWL70361.1\|4399726_4399933_+	AlpA family transcriptional regulator	NA	NA	NA	NA
AWL70362.1\|4400265_4401471_+\|integrase	site-specific integrase	NA	NA	NA	NA
AWL70363.1\|4401472_4402765_+\|integrase	site-specific integrase	NA	NA	NA	NA
AWL70364.1\|4402810_4403734_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	9.6e-173	97.4
4402766:4403812	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4727263 : 4767270

Shigella_phage(55.26%)

head,transposase,tail,plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWL70643.1\|4727263_4728469_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
AWL71579.1\|4728751_4728952_+	hypothetical protein	NA	NA	NA	NA
AWL70644.1\|4729170_4729800_-	transcriptional regulator RcsA	NA	NA	NA	NA
AWL70645.1\|4730381_4731305_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	9.6e-173	97.4
AWL71580.1\|4731658_4732300_+	N-acetyltransferase	NA	NA	NA	NA
AWL70646.1\|4732709_4733420_-	protein mom	A0A0C4UQZ7	Shigella_phage	5.0e-105	78.4
AWL70647.1\|4733370_4733577_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
AWL70648.1\|4733990_4734530_-\|tail	tail assembly chaperone	Q6K1H1	Salmonella_virus	1.8e-30	44.6
AWL70649.1\|4734526_4736176_-	hypothetical protein	A0A0C4UQS2	Shigella_phage	1.2e-29	53.4
AWL71581.1\|4736190_4736724_-	DUF2313 domain-containing protein	C9DGQ7	Escherichia_phage	1.0e-54	58.2
AWL70650.1\|4736720_4737800_-	hypothetical protein	A0A0C4UQU9	Shigella_phage	2.6e-121	60.7
AWL70651.1\|4737800_4738238_-	hypothetical protein	A0A0C4UR04	Shigella_phage	5.5e-54	71.0
AWL70652.1\|4738234_4738825_-\|plate	phage baseplate assembly protein V	A0A0C4UQZ3	Shigella_phage	5.7e-70	65.3
AWL70653.1\|4738821_4739949_-\|plate	baseplate protein	C9DGQ3	Escherichia_phage	1.1e-138	66.1
AWL70654.1\|4739935_4741405_-	multidrug DMT transporter permease	A0A0C4UR32	Shigella_phage	1.7e-94	43.4
AWL70655.1\|4741418_4743452_-	tape measure domain-containing protein	A0A0C4UQU8	Shigella_phage	2.4e-123	48.3
AWL70656.1\|4743578_4744058_-	hypothetical protein	A0A0C4UR03	Shigella_phage	1.5e-36	66.2
AWL70657.1\|4744067_4744430_-\|tail	phage tail protein	A0A0C4UQZ1	Shigella_phage	1.7e-32	61.2
AWL70658.1\|4744439_4745948_-\|tail	phage tail protein	C9DGP7	Escherichia_phage	3.1e-189	67.2
AWL70659.1\|4745944_4746169_-	DUF2635 domain-containing protein	A0A0C4UR31	Shigella_phage	3.6e-09	62.8
AWL70660.1\|4746140_4746680_-	DUF1834 domain-containing protein	A0A0C4UQU7	Shigella_phage	9.5e-64	62.4
AWL70661.1\|4746679_4747102_-	DUF1320 domain-containing protein	A0A0C4UR02	Shigella_phage	9.1e-38	57.9
AWL71582.1\|4747098_4747500_-	hypothetical protein	NA	NA	NA	NA
AWL70662.1\|4747606_4747879_-	hypothetical protein	NA	NA	NA	NA
AWL70663.1\|4747936_4748893_-\|head	head protein	C9DGP2	Escherichia_phage	8.5e-116	64.3
AWL70664.1\|4748892_4750002_-\|protease	protease	C9DGP0	Escherichia_phage	2.1e-86	51.4
AWL70665.1\|4750216_4750699_-	phage virion morphogenesis protein	C9DGN8	Escherichia_phage	5.5e-47	60.6
AWL70666.1\|4750710_4752030_-\|head	phage head morphogenesis protein	C9DGN7	Escherichia_phage	1.7e-159	64.7
AWL70667.1\|4752013_4753579_-	DUF935 domain-containing protein	A0A0C4UQR8	Shigella_phage	4.1e-200	68.1
AWL70668.1\|4753578_4755246_-	hypothetical protein	A0A0C4UR29	Shigella_phage	4.3e-256	80.4
AWL70669.1\|4755248_4755827_-	DUF3486 domain-containing protein	A0A0C4UQU5	Shigella_phage	3.5e-80	82.3
AWL70670.1\|4755836_4756124_-	hypothetical protein	A0A0C4UR00	Shigella_phage	4.7e-38	84.2
AWL70671.1\|4756120_4756426_-	DUF2730 domain-containing protein	C9DGN2	Escherichia_phage	3.0e-14	47.2
AWL70672.1\|4756418_4756637_-	hypothetical protein	NA	NA	NA	NA
AWL71583.1\|4756640_4756820_-	hypothetical protein	A0A1W6JP52	Morganella_phage	1.0e-06	48.1
AWL70673.1\|4756803_4757184_-	hypothetical protein	NA	NA	NA	NA
AWL70674.1\|4757164_4757671_-	lysozyme	G0ZNC8	Cronobacter_phage	9.0e-48	55.6
AWL70675.1\|4757789_4758215_-	positive regulator of late transcription	A0A0C4UQZ9	Shigella_phage	1.6e-37	57.8
AWL70676.1\|4758297_4758720_-	hypothetical protein	NA	NA	NA	NA
AWL70677.1\|4758840_4759353_-	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	1.2e-28	39.8
AWL71584.1\|4759327_4759537_-	hypothetical protein	NA	NA	NA	NA
AWL70678.1\|4759530_4759884_-	hypothetical protein	NA	NA	NA	NA
AWL70679.1\|4759955_4760663_-	hypothetical protein	A0A0C4UQU2	Shigella_phage	4.2e-19	33.0
AWL70680.1\|4760659_4761091_-	hypothetical protein	NA	NA	NA	NA
AWL70681.1\|4761087_4761582_-	hypothetical protein	A0A0A7RUP4	Clostridium_phage	2.4e-05	37.0
AWL70682.1\|4761571_4761838_-	hypothetical protein	NA	NA	NA	NA
AWL70683.1\|4761943_4762468_-	host-nuclease inhibitor protein Gam	A0A0C4UQY5	Shigella_phage	2.3e-62	67.2
AWL70684.1\|4762741_4763008_-	host nuclease inhibitor protein	I6WB15	Burkholderia_virus	5.8e-14	54.8
AWL70685.1\|4763091_4763313_-	hypothetical protein	NA	NA	NA	NA
AWL70686.1\|4763309_4764263_-	DNA transposition protein	A0A0C4UQR3	Shigella_phage	5.6e-67	45.6
AWL70687.1\|4764333_4766310_-\|transposase	transposase	A0A2I7S9A8	Vibrio_phage	4.7e-177	50.2
AWL70688.1\|4766306_4766549_-	transcriptional regulator	A0A0M4UV99	Ralstonia_phage	8.1e-15	55.1
AWL70689.1\|4766781_4767270_+	hypothetical protein	A0A2D1GNK9	Pseudomonas_phage	3.7e-06	49.1

DBSCAN-SWA_9

5283569 : 5342384

Edwardsiella_phage(21.95%)

tRNA,protease,head,tail,terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWL71124.1\|5283569_5284508_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	3.0e-137	92.6
AWL71125.1\|5284556_5285813_-	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	1.0e-148	60.3
AWL71126.1\|5285812_5286025_-	hypothetical protein	A0A0U2RY08	Escherichia_phage	4.8e-19	59.2
AWL71127.1\|5286088_5286274_-	hypothetical protein	NA	NA	NA	NA
AWL71128.1\|5286267_5287386_-	hypothetical protein	A0A2I7RQF1	Vibrio_phage	2.2e-62	47.7
AWL71129.1\|5287397_5290562_-	exodeoxyribonuclease VIII	H6WRX1	Salmonella_phage	2.2e-136	39.5
AWL71130.1\|5291080_5291386_-	hypothetical protein	NA	NA	NA	NA
AWL71131.1\|5291461_5291659_-	hypothetical protein	NA	NA	NA	NA
AWL71132.1\|5291760_5292198_-	HNH endonuclease	A0A0S1RTH0	Acinetobacter_phage	8.6e-23	42.0
AWL71606.1\|5292472_5292856_-	transcriptional regulator	K7PHG0	Enterobacteria_phage	8.9e-32	61.8
AWL71133.1\|5292959_5293205_+	transcriptional regulator	A0A0M4QX15	Salmonella_phage	6.7e-17	59.2
AWL71134.1\|5293215_5293677_+	hypothetical protein	H9C162	Pectobacterium_phage	1.1e-17	44.0
AWL71135.1\|5293692_5293944_+	cell envelope biogenesis protein OmpA	NA	NA	NA	NA
AWL71136.1\|5293940_5294135_-	hypothetical protein	NA	NA	NA	NA
AWL71137.1\|5295210_5295747_+	replication protein	A0A0U2JGJ0	Escherichia_phage	1.3e-41	52.7
AWL71138.1\|5295784_5296036_+	hypothetical protein	NA	NA	NA	NA
AWL71139.1\|5296230_5296470_+	hypothetical protein	H6WRY6	Salmonella_phage	8.3e-20	64.7
AWL71140.1\|5296512_5297109_+	DUF1367 domain-containing protein	K7PKS6	Enterobacteria_phage	2.0e-94	84.2
AWL71141.1\|5297113_5297395_+	DUF1364 domain-containing protein	K7P7Q1	Enterobacteria_phage	5.3e-42	86.8
AWL71607.1\|5297394_5298084_+	antitermination protein	NA	NA	NA	NA
AWL71142.1\|5298253_5298976_+	protein mom	A0A0C4UQZ7	Shigella_phage	3.3e-88	68.1
AWL71143.1\|5299043_5299379_+\|holin	phage holin, lambda family	Q2A0C6	Sodalis_phage	9.8e-19	45.2
AWL71144.1\|5299382_5300021_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	6.2e-70	61.1
AWL71145.1\|5300017_5300404_+	DUF2570 domain-containing protein	NA	NA	NA	NA
AWL71146.1\|5300557_5300806_+	hypothetical protein	NA	NA	NA	NA
AWL71147.1\|5300849_5301932_+\|terminase	terminase	A0A0U2RXW9	Escherichia_phage	1.4e-50	49.5
AWL71148.1\|5301861_5303274_+\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	1.4e-186	69.9
AWL71149.1\|5303273_5304818_+	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	2.0e-98	43.9
AWL71608.1\|5304858_5305542_+\|head	phage head morphogenesis protein	H9C0V1	Aeromonas_phage	5.4e-56	49.6
AWL71150.1\|5305545_5306871_+	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	3.6e-72	41.2
AWL71151.1\|5306872_5307355_+	hypothetical protein	K4HYQ5	Acinetobacter_phage	3.4e-28	51.2
AWL71152.1\|5307354_5308383_+	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	3.5e-83	50.0
AWL71153.1\|5308386_5308731_+	hypothetical protein	A0A1X9SFA9	Acinetobacter_phage	2.2e-13	39.6
AWL71154.1\|5308734_5309205_+	DUF4054 domain-containing protein	K4HYQ8	Acinetobacter_phage	4.8e-11	37.0
AWL71155.1\|5309205_5309685_+	hypothetical protein	I6ZXX4	Escherichia_phage	2.9e-08	30.5
AWL71156.1\|5309681_5310047_+	hypothetical protein	NA	NA	NA	NA
AWL71157.1\|5310031_5310583_+	hypothetical protein	NA	NA	NA	NA
AWL71158.1\|5310563_5312048_+	DUF3383 domain-containing protein	A0A077KGV4	Edwardsiella_phage	3.0e-91	38.0
AWL71159.1\|5312047_5312485_+	hypothetical protein	A0A077K9T0	Edwardsiella_phage	2.3e-20	38.1
AWL71160.1\|5312484_5312889_+	hypothetical protein	H9C0W7	Aeromonas_phage	1.6e-18	43.8
AWL71161.1\|5312891_5313098_+	transcription elongation factor GreA	NA	NA	NA	NA
AWL71162.1\|5313097_5315107_+	hypothetical protein	A0A0M4REK7	Salmonella_phage	1.1e-51	64.6
AWL71163.1\|5315103_5315910_+	hypothetical protein	A0A077KGW3	Edwardsiella_phage	1.6e-27	37.4
AWL71164.1\|5315909_5316212_+	hypothetical protein	A0A077K9U4	Edwardsiella_phage	1.3e-25	52.5
AWL71165.1\|5316208_5317054_+	hypothetical protein	A0A077KC17	Edwardsiella_phage	2.5e-34	32.2
AWL71166.1\|5317055_5317733_+	oxidoreductase	A0A077KAY0	Edwardsiella_phage	5.6e-37	39.8
AWL71609.1\|5317741_5318098_+	hypothetical protein	A0A077KCA1	Edwardsiella_phage	9.1e-23	50.0
AWL71167.1\|5318094_5319327_+	hypothetical protein	A0A077KGW9	Edwardsiella_phage	7.6e-101	50.2
AWL71168.1\|5319343_5319931_+	DUF2612 domain-containing protein	A0A2R3UAM9	Myoviridae_environmental_samples	5.0e-34	37.7
AWL71169.1\|5319932_5321444_+	hypothetical protein	H9C0Y2	Aeromonas_phage	2.6e-26	51.6
AWL71170.1\|5321446_5322007_+\|tail	tail assembly chaperone	A0A0C4UQZ5	Shigella_phage	9.0e-25	38.0
AWL71171.1\|5322003_5322924_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AWL71172.1\|5323514_5324435_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AWL71173.1\|5324674_5328208_-	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
AWL71610.1\|5328444_5328777_+	multidrug DMT transporter	NA	NA	NA	NA
AWL71174.1\|5329276_5329531_+	DUF333 domain-containing protein	NA	NA	NA	NA
AWL71175.1\|5329560_5329989_-	heat shock protein HslJ	NA	NA	NA	NA
AWL71176.1\|5330039_5331032_-	2-hydroxyacid dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	2.1e-64	43.3
AWL71177.1\|5331500_5334113_+	YdbH family protein	NA	NA	NA	NA
AWL71178.1\|5334109_5334307_+	YnbE family lipoprotein	NA	NA	NA	NA
AWL71179.1\|5334315_5334639_+	DUF1318 domain-containing protein	NA	NA	NA	NA
AWL71180.1\|5334757_5335363_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
AWL71181.1\|5335632_5339520_+	ATP-dependent RNA helicase HrpA	A0A1V0SBU4	Catovirus	9.9e-54	26.8
AWL71611.1\|5339497_5340655_-	MFS transporter	NA	NA	NA	NA
AWL71182.1\|5340756_5341533_+	AraC family transcriptional regulator	NA	NA	NA	NA
AWL71183.1\|5341571_5342384_-\|protease	serine protease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP029446

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3136 : 53340

Escherichia_phage(22.73%)

transposase,integrase,tRNA,coat

attL 14019:14035|attR 52627:52643

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWL66192.1\|3136_4297_-\|coat	spore coat protein CotH	NA	NA	NA	NA
AWL66193.1\|4299_4848_-	DNA distortion polypeptide 1	NA	NA	NA	NA
AWL66194.1\|5175_5433_-	hypothetical protein	NA	NA	NA	NA
AWL66195.1\|5675_6017_-	hypothetical protein	NA	NA	NA	NA
AWL66196.1\|6113_6353_-	hypothetical protein	NA	NA	NA	NA
AWL66255.1\|6345_6612_-	hypothetical protein	NA	NA	NA	NA
AWL66197.1\|6623_7166_-	hypothetical protein	NA	NA	NA	NA
AWL66198.1\|7209_7725_-	molecular chaperone DnaJ	A0A219YC37	Aeromonas_phage	5.6e-05	36.9
AWL66199.1\|8349_8586_-	hypothetical protein	NA	NA	NA	NA
AWL66200.1\|9109_10015_+	RepB family plasmid replication initiator protein	NA	NA	NA	NA
AWL66201.1\|10023_10461_+	hypothetical protein	NA	NA	NA	NA
AWL66202.1\|10643_11000_+	DNA distortion polypeptide 3	NA	NA	NA	NA
AWL66203.1\|10996_11974_-	hypothetical protein	NA	NA	NA	NA
AWL66204.1\|11998_12280_-	CopG family transcriptional regulator	NA	NA	NA	NA
AWL66205.1\|12377_13040_-	peptidyl-arginine deiminase	E5FFJ3	Burkholderia_phage	4.5e-07	26.1
AWL66206.1\|13373_14021_+	resolvase	M9Q1K0	Clostridium_phage	1.3e-06	25.0
14019:14035	attL	NA	NA	NA	NA
AWL66207.1\|14285_15146_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
AWL66208.1\|15845_16670_-	oxacillin-hydrolyzing class D beta-lactamase OXA-9	NA	NA	NA	NA
AWL66209.1\|16729_17518_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
AWL66256.1\|17587_18142_-	AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase	NA	NA	NA	NA
AWL66210.1\|18375_18933_-	recombinase	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
AWL66211.1\|20211_21388_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	5.8e-122	67.2
AWL66212.1\|22049_23525_+	ABC-F type ribosomal protection protein Msr(E)	A0A1B0RXA0	Streptococcus_phage	2.3e-160	59.0
AWL66213.1\|23580_24465_+	Mph(E) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
AWL66214.1\|24548_25253_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWL66215.1\|25559_26834_-\|transposase	IS4-like element ISApu2 family transposase	NA	NA	NA	NA
AWL66216.1\|26932_27142_+	hypothetical protein	Q1MVP5	Enterobacteria_phage	1.1e-33	98.6
AWL66217.1\|27166_28234_-	TraN	A0A0R6PHM5	Moraxella_phage	1.4e-34	35.7
AWL66218.1\|28238_28535_-	transcriptional repressor protein KorC	NA	NA	NA	NA
AWL66219.1\|28863_29289_-	antirestriction protein	A0A2D0W8Z5	Bordetella_virus	3.6e-18	38.1
AWL66220.1\|29399_29678_-	hypothetical protein	NA	NA	NA	NA
AWL66221.1\|29661_30003_-	hypothetical protein	NA	NA	NA	NA
AWL66222.1\|30173_31553_-	replication protein	D2XQ07	Bacillus_virus	3.5e-09	23.0
AWL66223.1\|31725_32022_-	addiction module antidote protein, HigA family	NA	NA	NA	NA
AWL66224.1\|32639_33170_+	recombinase family protein	E5FFF9	Burkholderia_phage	1.8e-38	51.2
AWL66225.1\|33216_33921_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWL66226.1\|36676_37441_-\|transposase	IS6 family transposase IS6100	A0A077SL39	Escherichia_phage	4.3e-86	65.7
AWL66227.1\|37543_39259_-\|integrase	integrase	NA	NA	NA	NA
AWL66228.1\|39368_42398_+\|transposase	IS3-like element Tn4401 family transposase	NA	NA	NA	NA
AWL66229.1\|42504_43530_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
AWL66230.1\|43526_44306_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
AWL66231.1\|44692_45574_+	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
AWL66232.1\|45823_47143_-\|transposase	IS1182 family transposase ISKpn6	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
AWL66233.1\|47539_47653_+	NTP-binding protein	NA	NA	NA	NA
AWL66234.1\|47958_48459_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AWL66235.1\|48477_48657_+	hypothetical protein	NA	NA	NA	NA
AWL66236.1\|48586_49426_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AWL66237.1\|49419_49767_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AWL66238.1\|49871_50162_-	DUF1010 domain-containing protein	NA	NA	NA	NA
AWL66239.1\|50270_50744_-	trimethoprim-resistant dihydrofolate reductase DfrA5	G3MBI7	Bacillus_virus	1.0e-13	27.7
AWL66240.1\|51336_52350_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AWL66241.1\|52288_52558_+\|transposase	transposase	NA	NA	NA	NA
AWL66242.1\|53070_53340_-\|tRNA	methionyl-tRNA formyltransferase	NA	NA	NA	NA
52627:52643	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029448

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP029449

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP029446

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection