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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP029329 Clostridium beijerinckii isolate WB53 chromosome, complete genome 8 crisprs cas14j,DinG,cas3,DEDDh,c2c9_V-U4,RT,WYL,cas2,cas1,cas4,cas7b,cas8c,cas5,csa3,PrimPol 1 12 8 0
CP029330 Clostridium beijerinckii isolate WB53 plasmid unnamed1 0 crisprs NA 0 0 0 0

Results visualization

1. CP029329
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029329_1 438959-439051 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029329_2 561419-561513 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029329_4 675745-675845 TypeV NA
1 spacers
cas14j

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029329_5 683116-683194 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029329_6 1474055-1474156 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029329_7 2465351-2465492 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029329_8 3245095-3247934 TypeI I-C
42 spacers
cas2,cas1,cas4,cas7b,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029329_9 3830298-3830384 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP029329_9 9.1|3830327|29|CP029329|CRISPRCasFinder 3830327-3830355 29 CP029329.1 1822815-1822843 2 0.931
CP029329_9 9.1|3830327|29|CP029329|CRISPRCasFinder 3830327-3830355 29 CP029329.1 2397261-2397289 2 0.931

1. spacer 9.1|3830327|29|CP029329|CRISPRCasFinder matches to position: 1822815-1822843, mismatch: 2, identity: 0.931

ggtgaaaagatcttaattgtgcttcgcac	CRISPR spacer
ggtgagaagattttaattgtgcttcgcac	Protospacer
*****.*****.*****************

2. spacer 9.1|3830327|29|CP029329|CRISPRCasFinder matches to position: 2397261-2397289, mismatch: 2, identity: 0.931

ggtgaaaagatcttaattgtgcttcgcac	CRISPR spacer
ggtgaaaagttcttgattgtgcttcgcac	Protospacer
********* ****.**************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP029329_5 5.1|683139|33|CP029329|CRISPRCasFinder 683139-683171 33 MK893987 Staphylococcus phage PMBT8, complete genome 8287-8319 6 0.818
CP029329_5 5.1|683139|33|CP029329|CRISPRCasFinder 683139-683171 33 AP014342 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S37-C78, *** SEQUENCING IN PROGRESS *** 4225-4257 7 0.788
CP029329_8 8.38|3247602|34|CP029329|PILER-CR,CRISPRCasFinder,CRT 3247602-3247635 34 NZ_CP014325 Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence 49119-49152 7 0.794
CP029329_9 9.1|3830327|29|CP029329|CRISPRCasFinder 3830327-3830355 29 NC_019772 Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence 155124-155152 7 0.759
CP029329_8 8.22|3246532|34|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246532-3246565 34 MN693342 Marine virus AFVG_25M9, complete genome 7132-7165 8 0.765
CP029329_8 8.27|3246865|34|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246865-3246898 34 NC_024217 Nitrincola phage 1M3-16, complete genome 79201-79234 8 0.765
CP029329_5 5.1|683139|33|CP029329|CRISPRCasFinder 683139-683171 33 MH542234 Staphylococcus phage Terranova, complete genome 118896-118928 9 0.727
CP029329_5 5.1|683139|33|CP029329|CRISPRCasFinder 683139-683171 33 NC_041928 Staphylococcus phage phiIBB-SEP1, complete genome 84461-84493 9 0.727
CP029329_5 5.1|683139|33|CP029329|CRISPRCasFinder 683139-683171 33 KP027447 Staphylococcus phage phiIPLA-C1C, complete genome 85475-85507 9 0.727
CP029329_5 5.1|683139|33|CP029329|CRISPRCasFinder 683139-683171 33 MH321490 Staphylococcus phage Quidividi, complete genome 119803-119835 9 0.727
CP029329_5 5.1|683139|33|CP029329|CRISPRCasFinder 683139-683171 33 MH321491 Staphylococcus phage Twillingate, complete genome 121429-121461 9 0.727
CP029329_5 5.1|683139|33|CP029329|CRISPRCasFinder 683139-683171 33 MF417868 Uncultured Caudovirales phage clone 7AX_1, partial genome 63081-63113 9 0.727
CP029329_8 8.23|3246598|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246598-3246632 35 NZ_LR217738 Candidatus Erwinia haradaeae strain ErCipiceae isolate 3303 plasmid pBio 25344-25378 9 0.743
CP029329_8 8.23|3246598|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246598-3246632 35 CP024689 Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-5-125K, complete sequence 79420-79454 9 0.743
CP029329_8 8.25|3246732|33|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246732-3246764 33 NC_019521 Sphingomonas phage PAU, complete genome 26907-26939 9 0.727
CP029329_8 8.25|3246732|33|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246732-3246764 33 GU071095 Synechococcus phage S-SM2, complete genome 124950-124982 9 0.727
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 KX346250 Lactococcus phage MW18S, complete genome 9247-9281 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 KC182543 Lactococcus lactis phage 645, complete genome 10586-10620 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 NC_028900 Lactococcus phage SL4, complete genome 8554-8588 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 NC_049361 Lactococcus phage 936 group phage PhiL.6, complete genome 9079-9113 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 KX379672 Lactococcus phage 16W12L, complete genome 9684-9718 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 KY554760 Lactococcus phage R3.4, complete genome 8139-8173 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 DQ054536 Lactococcus phage P008, complete genome 8316-8350 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 NC_001909 Lactococcus phage bIL170, complete genome 9840-9874 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 MF448569 Lactococcus phage 88605, complete genome 10130-10164 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 KX379673 Lactococcus phage MW18L, complete genome 9905-9939 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 NC_021852 Lactococcus phage P680, complete genome 9649-9683 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 NC_049373 Lactococcus phage 16W23, complete genome 9379-9413 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 MF448564 Lactococcus phage 62601, complete genome 8439-8473 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 NC_049480 Lactococcus phage CHPC129, complete genome 8400-8434 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 KX346242 Lactococcus phage 8R06S, complete genome 8860-8894 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 KP793117 Lactococcus phage 936 group phage PhiG, complete genome 10119-10153 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 MF448567 Lactococcus phage 66901, complete genome 9235-9269 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 KC182542 Lactococcus phage 340, complete genome 10585-10619 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 NC_049483 Lactococcus phage CHPC52, complete genome 9827-9861 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 KC182550 Lactococcus lactis phage P475, complete genome 8890-8924 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 AF009630 Bacteriophage bIL170, complete genome 9840-9874 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 MF448566 Lactococcus phage 63302, complete genome 9521-9555 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 KY554761 Lactococcus phage R31, complete genome 7932-7966 9 0.743
CP029329_8 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246931-3246965 35 KC182545 Lactococcus phage fd13, complete genome 10610-10644 9 0.743
CP029329_8 8.7|3245527|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3245527-3245561 35 AJ972879 Yersinia phage phiR1-37 complete genome 135946-135980 10 0.714
CP029329_8 8.7|3245527|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3245527-3245561 35 NC_016163 Yersinia phage phiR1-37, complete genome 135946-135980 10 0.714
CP029329_8 8.8|3245594|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3245594-3245628 35 NZ_KY807920 Salmonella enterica subsp. enterica serovar Paratyphi B isolate 12-02541 plasmid pSE12-02541, complete sequence 1547-1581 10 0.714
CP029329_8 8.8|3245594|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3245594-3245628 35 NZ_KY807921 Salmonella enterica subsp. enterica serovar Paratyphi B isolate 13-SA01718 plasmid pSE13-SA01718, complete sequence 1547-1581 10 0.714
CP029329_8 8.8|3245594|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3245594-3245628 35 NC_025830 Escherichia phage Av-05, complete genome 22288-22322 10 0.714
CP029329_8 8.16|3246132|34|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246132-3246165 34 KU234532 Nostoc phage N1, complete genome 31342-31375 10 0.706
CP029329_8 8.27|3246865|34|CP029329|PILER-CR,CRISPRCasFinder,CRT 3246865-3246898 34 MN694445 Marine virus AFVG_250M317, complete genome 16387-16420 10 0.706
CP029329_8 8.41|3247802|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3247802-3247836 35 MN694579 Marine virus AFVG_250M1138, complete genome 22353-22387 10 0.714
CP029329_8 8.41|3247802|35|CP029329|PILER-CR,CRISPRCasFinder,CRT 3247802-3247836 35 MN694540 Marine virus AFVG_250M802, complete genome 20881-20915 10 0.714

1. spacer 5.1|683139|33|CP029329|CRISPRCasFinder matches to MK893987 (Staphylococcus phage PMBT8, complete genome) position: , mismatch: 6, identity: 0.818

tttttttaaaggtgtatattctttaacagtcaa-	CRISPR spacer
tttttctaaaggagtatattctttta-ggtcata	Protospacer
*****.****** *********** * .****  

2. spacer 5.1|683139|33|CP029329|CRISPRCasFinder matches to AP014342 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S37-C78, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.788

tttttttaaaggtgtatattcttt--aacagtcaa	CRISPR spacer
tttttctaaaggtttatattcttttagaaaatc--	Protospacer
*****.******* **********  .* *.**  

3. spacer 8.38|3247602|34|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014325 (Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence) position: , mismatch: 7, identity: 0.794

atttcctggtaatcttgatattttaaaatcttta---	CRISPR spacer
agttgcaggtaatcttgatattttaag---tttaaat	Protospacer
* ** * *******************.   ****   

4. spacer 9.1|3830327|29|CP029329|CRISPRCasFinder matches to NC_019772 (Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence) position: , mismatch: 7, identity: 0.759

ggtgaaaagatcttaattgtgcttcgcac	CRISPR spacer
tcacaaaagttcttaattgtgcttcccaa	Protospacer
    ***** *************** ** 

5. spacer 8.22|3246532|34|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to MN693342 (Marine virus AFVG_25M9, complete genome) position: , mismatch: 8, identity: 0.765

aataaaggagttaagagcaatgtcgttaaaagat	CRISPR spacer
aataaatgaattaagagcaatgtcaccagaggag	Protospacer
****** **.**************...*.*.** 

6. spacer 8.27|3246865|34|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to NC_024217 (Nitrincola phage 1M3-16, complete genome) position: , mismatch: 8, identity: 0.765

taacagtattgtttaataagtaatggagattaca	CRISPR spacer
taacagtattatttaataaataatataaacaata	Protospacer
**********.********.****. *.*. *.*

7. spacer 5.1|683139|33|CP029329|CRISPRCasFinder matches to MH542234 (Staphylococcus phage Terranova, complete genome) position: , mismatch: 9, identity: 0.727

tttttttaaaggtgtatattctttaacagtcaa	CRISPR spacer
tttctttaaaggtgtaaattcttttttattttc	Protospacer
***.************ *******  .* *.  

8. spacer 5.1|683139|33|CP029329|CRISPRCasFinder matches to NC_041928 (Staphylococcus phage phiIBB-SEP1, complete genome) position: , mismatch: 9, identity: 0.727

tttttttaaaggtgtatattctttaacagtcaa	CRISPR spacer
tttctttaaaggtgtaaattcttttttattttc	Protospacer
***.************ *******  .* *.  

9. spacer 5.1|683139|33|CP029329|CRISPRCasFinder matches to KP027447 (Staphylococcus phage phiIPLA-C1C, complete genome) position: , mismatch: 9, identity: 0.727

tttttttaaaggtgtatattctttaacagtcaa	CRISPR spacer
tttctttaaaggtgtaaattcttttttattttc	Protospacer
***.************ *******  .* *.  

10. spacer 5.1|683139|33|CP029329|CRISPRCasFinder matches to MH321490 (Staphylococcus phage Quidividi, complete genome) position: , mismatch: 9, identity: 0.727

tttttttaaaggtgtatattctttaacagtcaa	CRISPR spacer
tttctttaaaggtgtaaattcttttttattttc	Protospacer
***.************ *******  .* *.  

11. spacer 5.1|683139|33|CP029329|CRISPRCasFinder matches to MH321491 (Staphylococcus phage Twillingate, complete genome) position: , mismatch: 9, identity: 0.727

tttttttaaaggtgtatattctttaacagtcaa	CRISPR spacer
tttctttaaaggtgtaaattcttttttattttc	Protospacer
***.************ *******  .* *.  

12. spacer 5.1|683139|33|CP029329|CRISPRCasFinder matches to MF417868 (Uncultured Caudovirales phage clone 7AX_1, partial genome) position: , mismatch: 9, identity: 0.727

tttttttaaaggtgtatattctttaacagtcaa	CRISPR spacer
tttctttaaaggtgtaaattcttttttattttc	Protospacer
***.************ *******  .* *.  

13. spacer 8.23|3246598|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR217738 (Candidatus Erwinia haradaeae strain ErCipiceae isolate 3303 plasmid pBio) position: , mismatch: 9, identity: 0.743

gttttattatggatatggattattcatttattatt	CRISPR spacer
tataaaacatcgatatgcattattcatttattatc	Protospacer
  *  * .** ****** ****************.

14. spacer 8.23|3246598|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to CP024689 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-5-125K, complete sequence) position: , mismatch: 9, identity: 0.743

gtttta----ttatggatatggattattcatttattatt	CRISPR spacer
----taaaagccagggatatggattattcatctattgtt	Protospacer
    **    ..* *****************.****.**

15. spacer 8.25|3246732|33|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to NC_019521 (Sphingomonas phage PAU, complete genome) position: , mismatch: 9, identity: 0.727

gtaaaaaatccattaaatccaaaataccaccag	CRISPR spacer
gtaaaaacttcattaaatccaaaaggtcaaaca	Protospacer
******* *.************** ..**   .

16. spacer 8.25|3246732|33|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to GU071095 (Synechococcus phage S-SM2, complete genome) position: , mismatch: 9, identity: 0.727

gtaaaaaatccattaaatccaaaataccaccag	CRISPR spacer
ttaaaaaatccattaaatcacaaatccaaattc	Protospacer
 ******************  **** * * .  

17. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to KX346250 (Lactococcus phage MW18S, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagaacttaaaa	Protospacer
  ***************  ********  ..** *

18. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to KC182543 (Lactococcus lactis phage 645, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagaacttaaaa	Protospacer
  ***************  ********  ..** *

19. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to NC_028900 (Lactococcus phage SL4, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagaacttaaaa	Protospacer
  ***************  ********  ..** *

20. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to NC_049361 (Lactococcus phage 936 group phage PhiL.6, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagaacttaaaa	Protospacer
  ***************  ********  ..** *

21. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to KX379672 (Lactococcus phage 16W12L, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagaacttaaaa	Protospacer
  ***************  ********  ..** *

22. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to KY554760 (Lactococcus phage R3.4, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagagcttaaaa	Protospacer
  ***************  ********  ..** *

23. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to DQ054536 (Lactococcus phage P008, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagagcttaaaa	Protospacer
  ***************  ********  ..** *

24. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to NC_001909 (Lactococcus phage bIL170, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagaacttaaaa	Protospacer
  ***************  ********  ..** *

25. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to MF448569 (Lactococcus phage 88605, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagagcttaaga	Protospacer
  ***************  ********  ..** *

26. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to KX379673 (Lactococcus phage MW18L, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagaacttaaaa	Protospacer
  ***************  ********  ..** *

27. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to NC_021852 (Lactococcus phage P680, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagagcttaaaa	Protospacer
  ***************  ********  ..** *

28. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to NC_049373 (Lactococcus phage 16W23, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagaacttaaaa	Protospacer
  ***************  ********  ..** *

29. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to MF448564 (Lactococcus phage 62601, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagagcttaaaa	Protospacer
  ***************  ********  ..** *

30. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to NC_049480 (Lactococcus phage CHPC129, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagagcttaaaa	Protospacer
  ***************  ********  ..** *

31. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to KX346242 (Lactococcus phage 8R06S, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagaacttaaaa	Protospacer
  ***************  ********  ..** *

32. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to KP793117 (Lactococcus phage 936 group phage PhiG, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagagcttaaaa	Protospacer
  ***************  ********  ..** *

33. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to MF448567 (Lactococcus phage 66901, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
tcagcaacaaaaagcaatggatacagaacttaaaa	Protospacer
  ***************  ********  ..** *

34. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to KC182542 (Lactococcus phage 340, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagaacttaaaa	Protospacer
  ***************  ********  ..** *

35. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to NC_049483 (Lactococcus phage CHPC52, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
tcagcaacaaaaagcaatggatacagaacttaaaa	Protospacer
  ***************  ********  ..** *

36. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to KC182550 (Lactococcus lactis phage P475, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
tcagcaacaaaaagcaatggatacagaacttaaaa	Protospacer
  ***************  ********  ..** *

37. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to AF009630 (Bacteriophage bIL170, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagaacttaaaa	Protospacer
  ***************  ********  ..** *

38. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to MF448566 (Lactococcus phage 63302, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagaacttaaga	Protospacer
  ***************  ********  ..** *

39. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to KY554761 (Lactococcus phage R31, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagagcttaaaa	Protospacer
  ***************  ********  ..** *

40. spacer 8.28|3246931|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to KC182545 (Lactococcus phage fd13, complete genome) position: , mismatch: 9, identity: 0.743

ggagcaacaaaaagcaaacgatacagataccaata	CRISPR spacer
ccagcaacaaaaagcaatggatacagagcttaaaa	Protospacer
  ***************  ********  ..** *

41. spacer 8.7|3245527|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to AJ972879 (Yersinia phage phiR1-37 complete genome) position: , mismatch: 10, identity: 0.714

gatgtaattggtatattaggatctattgcattaca	CRISPR spacer
ctagaagcgggtatattaggatttattgtattacc	Protospacer
   * *.. *************.*****.***** 

42. spacer 8.7|3245527|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to NC_016163 (Yersinia phage phiR1-37, complete genome) position: , mismatch: 10, identity: 0.714

gatgtaattggtatattaggatctattgcattaca	CRISPR spacer
ctagaagcgggtatattaggatttattgtattacc	Protospacer
   * *.. *************.*****.***** 

43. spacer 8.8|3245594|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY807920 (Salmonella enterica subsp. enterica serovar Paratyphi B isolate 12-02541 plasmid pSE12-02541, complete sequence) position: , mismatch: 10, identity: 0.714

tgaaaatataactaaagaggtgatttaatatgtat	CRISPR spacer
ggagaatataactaaaggggtgatttcaacaaggt	Protospacer
 **.*************.******** *   . .*

44. spacer 8.8|3245594|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY807921 (Salmonella enterica subsp. enterica serovar Paratyphi B isolate 13-SA01718 plasmid pSE13-SA01718, complete sequence) position: , mismatch: 10, identity: 0.714

tgaaaatataactaaagaggtgatttaatatgtat	CRISPR spacer
ggagaatataactaaaggggtgatttcaacaaggt	Protospacer
 **.*************.******** *   . .*

45. spacer 8.8|3245594|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to NC_025830 (Escherichia phage Av-05, complete genome) position: , mismatch: 10, identity: 0.714

tgaaaatataactaaagaggtgatttaatatgtat	CRISPR spacer
cagcatactaactagcgaggtgatttaatatgttt	Protospacer
... *   ******. ***************** *

46. spacer 8.16|3246132|34|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to KU234532 (Nostoc phage N1, complete genome) position: , mismatch: 10, identity: 0.706

atcagcattgattaacatttttatatatccatta	CRISPR spacer
ttggatattgattaacactttaatatatccagct	Protospacer
 * ...***********.*** ********* . 

47. spacer 8.27|3246865|34|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to MN694445 (Marine virus AFVG_250M317, complete genome) position: , mismatch: 10, identity: 0.706

taacagtattgtttaataagtaatggagattaca	CRISPR spacer
aatggatattatttaataagttatggagattggg	Protospacer
 *  ..****.********** *********. .

48. spacer 8.41|3247802|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to MN694579 (Marine virus AFVG_250M1138, complete genome) position: , mismatch: 10, identity: 0.714

ctaaagatattcaattaaaaagtaaa-----tatgatttt	CRISPR spacer
ttaaaaatattcaattaaaaactaaagtacctaaa-----	Protospacer
.****.*************** ****     ** .     

49. spacer 8.41|3247802|35|CP029329|PILER-CR,CRISPRCasFinder,CRT matches to MN694540 (Marine virus AFVG_250M802, complete genome) position: , mismatch: 10, identity: 0.714

ctaaagatattcaattaaaaagtaaa-----tatgatttt	CRISPR spacer
ttaaaaatattcaattaaaaactaaagtacctaaa-----	Protospacer
.****.*************** ****     ** .     

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1210111 : 1223654 17 Clostridium_phage(33.33%) capsid,terminase,tail,head,tRNA,portal,protease,integrase attL 1211881:1211904|attR 1225311:1225334
DBSCAN-SWA_2 1397589 : 1431802 24 Bacillus_virus(50.0%) coat,protease,transposase,tRNA NA
DBSCAN-SWA_3 1885467 : 1894720 11 Clostridium_phage(28.57%) integrase attL 1877867:1877882|attR 1901782:1901797
DBSCAN-SWA_4 2112417 : 2124065 9 Cyanophage(25.0%) NA NA
DBSCAN-SWA_5 3223228 : 3290117 53 uncultured_Caudovirales_phage(50.0%) coat,protease,transposase NA
DBSCAN-SWA_6 3347156 : 3374340 39 Bacteriophage(21.74%) capsid,terminase,tail,head,portal,integrase attL 3355592:3355607|attR 3368855:3368870
DBSCAN-SWA_7 3689719 : 3750409 56 Leptospira_phage(14.29%) transposase,integrase attL 3701881:3701900|attR 3715438:3715457
DBSCAN-SWA_8 4017964 : 4028410 19 Geobacillus_phage(28.57%) tail,head NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage