CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029206	Actinobacillus porcitonsillarum strain 9953L55 chromosome, complete genome	1 crisprs	DEDDh,csa3,cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,WYL,DinG	0	10	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029206_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029206_1

1159410-1161836

TypeI

Consensus_repeat	Method
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	CRISPRCasFinder
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	CRT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	PILER-CR

36 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of CP029206_1

>merge|CP029206|1|1159410-1161836|CRISPRCasFinder,CRT,PILER-CR
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACTCTAATATGAGAAAATCAAGTTTTTTTTTTTAAAGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACGATTTTTTGGATTTGTCAATTAAGGTATGACTGGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACAGCGTTATAAAGTAACCGTCAATCAAAAAATTTTAAGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACAGTGGTTGGTAGTTTAGCTGTTAAACCAAAAACGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACATAAAAAGTATTTAAATTTATGATTGCCAATCCTTGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACAAATTTTTTTATCGCAATGCCACTATATATAAAGCGGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACCCATATGTGGGGAAATCGGGAAAAAAAAATTTATGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACATTATTTGATGGCTAGAAATTGTAAAATATAACTTGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACATGTTCTTTGAAAAATTTTTTTTATCGGCAATGCCAGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACTGTCAATCCAGATCTTACAAATTCCACATAATCAAGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACAAACCAAAAAAGATCAAGGCTTTTGTAACAAATAAGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACGAAATTGTAAAATATAACTTGATTTGGTATATGTAGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACCCATATATGGAAAAATCAAGTTTTATTTTATAAAAGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACCCTCTTGTTTTACGATTGCTTACGCCTTGCCTATGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACTATATATAGTAAGCATTGCCAATAAAAAATTTTTGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACGATTGACAAAATAATGCTAGAATTTATCGTTTGAGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACATTCTAAAAGCCTTGATCTTTTTTGGTTTAAAAGGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACATCAGATCCCGTTTATCGCTGTTTAGCCTTTCAGGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACTCAAATATGGCCTTAGGTATTATTTTTTATTAGTGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACATTACAAATGTCTTGATCGTTTTTGGTTTAAAAGGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACAAACCAAATTTTGCAATTTTTAGACCGCTGAAAATTGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACGAAGAATTGGCAAATGATAAATTAAATAAAAGTTGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACGATTGACAAAATAGGGTTAGAATTTATTACTTGAGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACGTATTATAAAGTAGTTATTTTGTTTTGTCAATCGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACGGATTTTGTCAATTAAGAATTTACAGCTTTTGACGGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACAGGTATTATTTTTTATTAGTATAATAAATAAACAAGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACAGATTTTATCAAGTGATATTTTCTAGTTTTTGGGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACATATATGGGAAAATCGGGAAAAAAAAATTTATCGAGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACAGATTTTATCAAGTGATATTTTATAGTTTTTGGTAGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACGGCTTGGTAATGCCGCCTCATACGCATTCAGCACATGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACGTGGAATTGGCAAATGATAAATTAAATACTTTTTAGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACAAGGTGGCGATGCCGATGATATGCGTAAATATGCGGTCGCTCCCTTCGCGGGAGCGCGAGTTGAAACTTATCTTCTAGGTAGCCTAATGCCGTAGTTGTTGTCGCTCCCTTCACGGGAGCGCGAGTTGAAACATTGAGATATCATAAACATCTGCCATTGCTCTAGCGTCGCTCCCTTCGCGGGAGCGTGAGTTGAAACCCAAGTAAAAGTATTATGGACTGAAGCCAATGGGGGGCGCTCCCTTCGCGGGAGTGCGAGTTGAAACATATCCAGCTTGCGCGCCATATCTAGCCCTAAAAGTCGCTCCCTTCGCGGGAGCGTGAGTTGAAAC

>CP029206|1|1|1159410-1161836|CRISPRCasFinder
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	TCTAATATGAGAAAATCAAGTTTTTTTTTTTAAA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GATTTTTTGGATTTGTCAATTAAGGTATGACTG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AGCGTTATAAAGTAACCGTCAATCAAAAAATTTTAA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AGTGGTTGGTAGTTTAGCTGTTAAACCAAAAAC
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATAAAAAGTATTTAAATTTATGATTGCCAATCCTT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AAATTTTTTTATCGCAATGCCACTATATATAAAGCG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	CCATATGTGGGGAAATCGGGAAAAAAAAATTTAT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATTATTTGATGGCTAGAAATTGTAAAATATAACTT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATGTTCTTTGAAAAATTTTTTTTATCGGCAATGCCA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	TGTCAATCCAGATCTTACAAATTCCACATAATCAA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AAACCAAAAAAGATCAAGGCTTTTGTAACAAATAA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GAAATTGTAAAATATAACTTGATTTGGTATATGTA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	CCATATATGGAAAAATCAAGTTTTATTTTATAAAA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	CCTCTTGTTTTACGATTGCTTACGCCTTGCCTAT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	TATATATAGTAAGCATTGCCAATAAAAAATTTTT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GATTGACAAAATAATGCTAGAATTTATCGTTTGA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATTCTAAAAGCCTTGATCTTTTTTGGTTTAAAAG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATCAGATCCCGTTTATCGCTGTTTAGCCTTTCAG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	TCAAATATGGCCTTAGGTATTATTTTTTATTAGT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATTACAAATGTCTTGATCGTTTTTGGTTTAAAAG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AAACCAAATTTTGCAATTTTTAGACCGCTGAAAATT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GAAGAATTGGCAAATGATAAATTAAATAAAAGTT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GATTGACAAAATAGGGTTAGAATTTATTACTTGA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GTATTATAAAGTAGTTATTTTGTTTTGTCAATC
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GGATTTTGTCAATTAAGAATTTACAGCTTTTGACG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AGGTATTATTTTTTATTAGTATAATAAATAAACAA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AGATTTTATCAAGTGATATTTTCTAGTTTTTGG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATATATGGGAAAATCGGGAAAAAAAAATTTATCGA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AGATTTTATCAAGTGATATTTTATAGTTTTTGGTA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GGCTTGGTAATGCCGCCTCATACGCATTCAGCACAT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GTGGAATTGGCAAATGATAAATTAAATACTTTTTA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AAGGTGGCGATGCCGATGATATGCGTAAATATGCG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	TTATCTTCTAGGTAGCCTAATGCCGTAGTTGTT
GTCGCTCCCTTCACGGGAGCGCGAGTTGAAAC	ATTGAGATATCATAAACATCTGCCATTGCTCTAGC
GTCGCTCCCTTCGCGGGAGCGTGAGTTGAAAC	CCAAGTAAAAGTATTATGGACTGAAGCCAATGGGG
GGCGCTCCCTTCGCGGGAGTGCGAGTTGAAAC	ATATCCAGCTTGCGCGCCATATCTAGCCCTAAAA
GTCGCTCCCTTCGCGGGAGCGTGAGTTGAAAC

>CP029206|1|1|1159410-1161836|CRT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	TCTAATATGAGAAAATCAAGTTTTTTTTTTTAAA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GATTTTTTGGATTTGTCAATTAAGGTATGACTG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AGCGTTATAAAGTAACCGTCAATCAAAAAATTTTAA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AGTGGTTGGTAGTTTAGCTGTTAAACCAAAAAC
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATAAAAAGTATTTAAATTTATGATTGCCAATCCTT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AAATTTTTTTATCGCAATGCCACTATATATAAAGCG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	CCATATGTGGGGAAATCGGGAAAAAAAAATTTAT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATTATTTGATGGCTAGAAATTGTAAAATATAACTT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATGTTCTTTGAAAAATTTTTTTTATCGGCAATGCCA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	TGTCAATCCAGATCTTACAAATTCCACATAATCAA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AAACCAAAAAAGATCAAGGCTTTTGTAACAAATAA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GAAATTGTAAAATATAACTTGATTTGGTATATGTA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	CCATATATGGAAAAATCAAGTTTTATTTTATAAAA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	CCTCTTGTTTTACGATTGCTTACGCCTTGCCTAT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	TATATATAGTAAGCATTGCCAATAAAAAATTTTT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GATTGACAAAATAATGCTAGAATTTATCGTTTGA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATTCTAAAAGCCTTGATCTTTTTTGGTTTAAAAG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATCAGATCCCGTTTATCGCTGTTTAGCCTTTCAG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	TCAAATATGGCCTTAGGTATTATTTTTTATTAGT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATTACAAATGTCTTGATCGTTTTTGGTTTAAAAG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AAACCAAATTTTGCAATTTTTAGACCGCTGAAAATT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GAAGAATTGGCAAATGATAAATTAAATAAAAGTT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GATTGACAAAATAGGGTTAGAATTTATTACTTGA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GTATTATAAAGTAGTTATTTTGTTTTGTCAATC
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GGATTTTGTCAATTAAGAATTTACAGCTTTTGACG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AGGTATTATTTTTTATTAGTATAATAAATAAACAA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AGATTTTATCAAGTGATATTTTCTAGTTTTTGG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATATATGGGAAAATCGGGAAAAAAAAATTTATCGA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AGATTTTATCAAGTGATATTTTATAGTTTTTGGTA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GGCTTGGTAATGCCGCCTCATACGCATTCAGCACAT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GTGGAATTGGCAAATGATAAATTAAATACTTTTTA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AAGGTGGCGATGCCGATGATATGCGTAAATATGCG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	TTATCTTCTAGGTAGCCTAATGCCGTAGTTGTT
GTCGCTCCCTTCACGGGAGCGCGAGTTGAAAC	ATTGAGATATCATAAACATCTGCCATTGCTCTAGC
GTCGCTCCCTTCGCGGGAGCGTGAGTTGAAAC	CCAAGTAAAAGTATTATGGACTGAAGCCAATGGGG
GGCGCTCCCTTCGCGGGAGTGCGAGTTGAAAC	ATATCCAGCTTGCGCGCCATATCTAGCCCTAAAA
GTCGCTCCCTTCGCGGGAGCGTGAGTTGAAAC

>CP029206|1|1|1159541-1161836|PILER-CR
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AGCGTTATAAAGTAACCGTCAATCAAAAAATTTTAA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AGTGGTTGGTAGTTTAGCTGTTAAACCAAAAAC
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATAAAAAGTATTTAAATTTATGATTGCCAATCCTT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AAATTTTTTTATCGCAATGCCACTATATATAAAGCG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	CCATATGTGGGGAAATCGGGAAAAAAAAATTTAT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATTATTTGATGGCTAGAAATTGTAAAATATAACTT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATGTTCTTTGAAAAATTTTTTTTATCGGCAATGCCA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	TGTCAATCCAGATCTTACAAATTCCACATAATCAA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AAACCAAAAAAGATCAAGGCTTTTGTAACAAATAA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GAAATTGTAAAATATAACTTGATTTGGTATATGTA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	CCATATATGGAAAAATCAAGTTTTATTTTATAAAA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	CCTCTTGTTTTACGATTGCTTACGCCTTGCCTAT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	TATATATAGTAAGCATTGCCAATAAAAAATTTTT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GATTGACAAAATAATGCTAGAATTTATCGTTTGA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATTCTAAAAGCCTTGATCTTTTTTGGTTTAAAAG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATCAGATCCCGTTTATCGCTGTTTAGCCTTTCAG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	TCAAATATGGCCTTAGGTATTATTTTTTATTAGT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATTACAAATGTCTTGATCGTTTTTGGTTTAAAAG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AAACCAAATTTTGCAATTTTTAGACCGCTGAAAATT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GAAGAATTGGCAAATGATAAATTAAATAAAAGTT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GATTGACAAAATAGGGTTAGAATTTATTACTTGA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GTATTATAAAGTAGTTATTTTGTTTTGTCAATC
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GGATTTTGTCAATTAAGAATTTACAGCTTTTGACG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AGGTATTATTTTTTATTAGTATAATAAATAAACAA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AGATTTTATCAAGTGATATTTTCTAGTTTTTGG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	ATATATGGGAAAATCGGGAAAAAAAAATTTATCGA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AGATTTTATCAAGTGATATTTTATAGTTTTTGGTA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GGCTTGGTAATGCCGCCTCATACGCATTCAGCACAT
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	GTGGAATTGGCAAATGATAAATTAAATACTTTTTA
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	AAGGTGGCGATGCCGATGATATGCGTAAATATGCG
GTCGCTCCCTTCGCGGGAGCGCGAGTTGAAAC	TTATCTTCTAGGTAGCCTAATGCCGTAGTTGTT
GTCGCTCCCTTCACGGGAGCGCGAGTTGAAAC	ATTGAGATATCATAAACATCTGCCATTGCTCTAGC
GTCGCTCCCTTCGCGGGAGCGTGAGTTGAAAC	CCAAGTAAAAGTATTATGGACTGAAGCCAATGGGG
GGCGCTCCCTTCGCGGGAGTGCGAGTTGAAAC	ATATCCAGCTTGCGCGCCATATCTAGCCCTAAAA
GTCGCTCCCTTCGCGGGAGCGTGAGTTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP029206.1\|AWI51021.1\|1171759_1172626_-\|protease-HtpX	unknown	unknown	gnl\|CDD\|235478
CP029206.1\|AWI51018.1\|1167189_1169514_-\|formate-C-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
CP029206.1\|AWI51978.1\|1157846_1158860_+\|subtype-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
CP029206.1\|AWI51022.1\|1172708_1173782_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
CP029206.1\|AWI51014.1\|1161979_1163137_-\|chorismate-mutase	unknown	unknown	gnl\|CDD\|182594
CP029206.1\|AWI51009.1\|1153137_1154925_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|187887
CP029206.1\|AWI51008.1\|1150105_1151080_-\|IS30-like-element-ISApl1-family-transposase	unknown	unknown	gnl\|CDD\|225382
CP029206.1\|AWI51010.1\|1154927_1155791_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
CP029206.1\|AWI51020.1\|1171193_1171586_-\|TIGR00156-family-protein	unknown	unknown	gnl\|CDD\|225653
CP029206.1\|AWI51006.1\|1145501_1147778_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
CP029206.1\|AWI51007.1\|1147781_1149173_+\|fibronectin-binding-protein-(FBP)	unknown	unknown	gnl\|CDD\|379106
CP029206.1\|AWI51019.1\|1169609_1170434_-\|formate-transporter-FocA	unknown	unknown	gnl\|CDD\|274951
CP029206.1\|AWI51017.1\|1166238_1167051_-\|5'-nucleotidase,-lipoprotein-e(P4)-family	unknown	unknown	gnl\|CDD\|225305
CP029206.1\|AWI51015.1\|1163264_1165295_-\|oligopeptidase-A	unknown	unknown	gnl\|CDD\|182832
CP029206.1\|AWI51979.1\|1170636_1171134_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|224159
CP029206.1\|AWI51016.1\|1165383_1166124_-\|pyruvate-formate-lyase-1-activating-protein	unknown	unknown	gnl\|CDD\|182994
CP029206.1\|AWI51011.1\|1155790_1156456_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
CP029206.1\|AWI51012.1\|1156430_1157693_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372995
CP029206.1\|AWI51977.1\|1152463_1153141_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
CP029206.1\|AWI51013.1\|1158939_1159233_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
CP029206.1\|AWI51021.1\|1171759_1172626_-\|protease-HtpX	gnl\|CDD\|235478	PRK05457, PRK05457, protease HtpX.	1.12946e-166
CP029206.1\|AWI51018.1\|1167189_1169514_-\|formate-C-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
CP029206.1\|AWI51978.1\|1157846_1158860_+\|subtype-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
CP029206.1\|AWI51022.1\|1172708_1173782_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
CP029206.1\|AWI51014.1\|1161979_1163137_-\|chorismate-mutase	gnl\|CDD\|182594	PRK10622, pheA, bifunctional chorismate mutase/prephenate dehydratase; Provisional.	9.01785e-180
CP029206.1\|AWI51009.1\|1153137_1154925_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
CP029206.1\|AWI51008.1\|1150105_1151080_-\|IS30-like-element-ISApl1-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	2.48395e-86
CP029206.1\|AWI51010.1\|1154927_1155791_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	4.79456e-153
CP029206.1\|AWI51020.1\|1171193_1171586_-\|TIGR00156-family-protein	gnl\|CDD\|225653	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown].	8.87168e-40
CP029206.1\|AWI51006.1\|1145501_1147778_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.6494e-56
CP029206.1\|AWI51007.1\|1147781_1149173_+\|fibronectin-binding-protein-(FBP)	gnl\|CDD\|379106	pfam13289, SIR2_2, SIR2-like domain. This family of proteins are related to the sirtuins.	2.97887e-06
CP029206.1\|AWI51019.1\|1169609_1170434_-\|formate-transporter-FocA	gnl\|CDD\|274951	TIGR04060, formate_focA, formate transporter FocA. FocA (formate channel A) forms a pentameric formate-selective channel through the plasma membrane. The focA gene is largely restricted to Proteobacteria and occurs adjacent to genes for pyruvate formate lyase (PFL) and the PFL activase, a radical SAM protein. FocA is homologous to a nitrite transport protein, NirC. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	4.5562e-149
CP029206.1\|AWI51017.1\|1166238_1167051_-\|5'-nucleotidase,-lipoprotein-e(P4)-family	gnl\|CDD\|225305	COG2503, COG2503, Predicted secreted acid phosphatase [General function prediction only].	4.88406e-120
CP029206.1\|AWI51015.1\|1163264_1165295_-\|oligopeptidase-A	gnl\|CDD\|182832	PRK10911, PRK10911, oligopeptidase A; Provisional.	0
CP029206.1\|AWI51979.1\|1170636_1171134_+\|DedA-family-protein	gnl\|CDD\|224159	COG1238, COG1238, Predicted membrane protein [Function unknown].	2.40142e-22
CP029206.1\|AWI51016.1\|1165383_1166124_-\|pyruvate-formate-lyase-1-activating-protein	gnl\|CDD\|182994	PRK11145, pflA, pyruvate formate lyase 1-activating protein.	0
CP029206.1\|AWI51011.1\|1155790_1156456_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	4.1325e-42
CP029206.1\|AWI51012.1\|1156430_1157693_+\|hypothetical-protein	gnl\|CDD\|372995	pfam14279, HNH_5, HNH endonuclease. This domain is related to other HNH domain families such as pfam01844. Suggesting that these proteins have a nucleic acid cleaving function.	8.13063e-10
CP029206.1\|AWI51977.1\|1152463_1153141_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	7.26894e-114
CP029206.1\|AWI51013.1\|1158939_1159233_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.29989e-32

>CP029206.1|AWI51013.1|1158939_1159233_+|CRISPR-associated-endonuclease-Cas2
MLMLITYDISFDDPAGQARLRRIAKHCLDYGVRAQYSVFECDVTPDQWVKLKQKLLETYNPECDSLRFYHLGSKWRNKVEHHGAKPAVDVFKDVLII
>CP029206.1|AWI51978.1|1157846_1158860_+|subtype-I-C-CRISPR-associated-endonuclease-Cas1
MRKLQNTLYITTQGSYLHKERETLVVEQERKKVAQLPVHSIGHIFCFGNVLVSPFLMGFCGENNVNLAFFTENGRFLGRLQGRQSGNVLLRRAQYRLSEHNPVPIARHIIAAKIQSGKRVLQRRLRNHGEQQEVQAAVSALNFSLQQLKRAESLELIRGIEGDAAARYFGVFRQLLRENSGFAFDGRNRRPPRDGVNALLSFVYSILGKDISGALQGVGLDPQVGFLHADRPGRDSLAQDILEEFRAWWADRLVLSLINRGQIKPQDFVTEAGGAVNIKPEARKLLFQTLQAKKQEKIVHPFLQEEVEIGLLPYIQAMLLARHLRGDLAEYPPFLMR
>CP029206.1|AWI51012.1|1156430_1157693_+|hypothetical-protein
MWKGCSKGKLILIGRNKNMKCFLCEQDNVEMSLEHSIPQFLGGKKSDDKFKRLNLCKLCNSKLGTHVDARFARSFINAMELNEFNNDIFGGRLTSLKFDAGDEIHDLIPENNYVEMMSNEKSVAFWIKENTPDFLGLVGGHAPLSKSKISQLFLFITKEDLSEAELKQLLNDIILKFKDYKKLEILLCMNFSCGSVATEKDLAAYRKQIKSMFDIRGLKFIWEFSDKELNIANRLRPDGKDFKANVLFDLNDWVRFLSKLFLGILCGYLGNQFTKNPVGLKLIDILRTYSSRVVLSESDINRLKHPLKMSQVNLFLLERGSITVSIFQIGDDIVGLLGIGDNIYALRICKQQDLSKIEKDKLNISSDFCRIPEGITLVLNKNSDKYLEYNTKDFFLEKFFDEKFPGILERQKLEIISLLK
>CP029206.1|AWI51011.1|1155790_1156456_+|CRISPR-associated-protein-Cas4
MPDVQNFAANPPLAGTEERGLPTVSLSALQHYAFCPRQCALIHNEQAWAENYLTAQGRSLHERVDSGEPETRKGVRFERSVHVSAQQLGISGIVDMVEHDLVSGSLKPVEYKRGKPKPEPFDEIQLCAQALCLEEMTGQTIAEGALWYMQTRHRVPVVFSDGLRAQTLAVIAQVRDLLASGQTPPPVYGKRCKACSLVEVCQPKLLEKDRSVGYVEGLFEG
>CP029206.1|AWI51010.1|1154927_1155791_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSIQNRYEFVYFFDVTNGNPNGDPDAGNMPRLDPESSKGLVTDVCLKRKIRNFVELANENQPGYEIYVKDKGVLNLQNKRAYEALGIESEAKKLPKDEAKARDITAWMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIVPLEISITRMAVTNEKDLEKERTMGRKYIVPYALYRVHGFISANLAAKTGFSDDDLAKLWEALKLMFEHDRSAARGEMAARKLIVFKHDSALGSLPAHKLFDAVKVERVGGESGTPASGFADYQIRVDSDGLNGVSVEELL
>CP029206.1|AWI51009.1|1153137_1154925_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILASLARYYRRLATQNDDFGNPKVPPYGFSEEKIGWILVLDKEGRLQDAVPNLTADKKPQPKLMSVPRPEKRTSGVKPNFLWDKTAYALGVEANKDKAQAKTEPVVPSEKTFEAFRQYHLDLLQHEQDEGLQALYRFLQHWQPAQFADYPCLSETPDANVVFALDKPSALIHKREAAQTLWAGRLKSDEAEQGLCLVSGEEAPIARLHPAIKGVFGGQSSGGSIISFNKESFASFGKEQGANAPVSEVSAFAYTTALNYLLRRENGHCLTIGDASTVFWAEAADSETAAAAEDFFADIMTPPDDEQQSQKVFDILEQIAKGRPLQEIAPDLSPDTRFYILGLAPNAARISIRFWLDTTFGQLAANLAQHWQDLSLEPRPWKTAPSVWRLLLQTAVLGKSENISPVLAGEMMRAVIGGTLYPMSLLAQLIARIRADGDANGLRVAMIKAVLQRRFRKGLIHEEVSMSLNTESRNTAYLLGRLFAVLERIQYQALGELNAGIADRYYGSASAVPFSVFPRLLSGAKHHLSRLRKDKAGMAVNLDKDLGEIIAMLPETFPRHLSIDEQGRFAIGYYQQKQSYFAKKDPAVTQPHEGE
>CP029206.1|AWI51977.1|1152463_1153141_+|type-I-C-CRISPR-associated-protein-Cas5
MPNKIRLHIWGDYACFTRPEMKVERVSYDVITPSAARGVLAAVHWKPAIRWVIDRIYVLKPIRFESVRRNELGGKISESKVSGAMRRKSVEDLYTLIDDDRQQRAATVLKDVGYVIEAHAVLTAKAGEGDTITKHIEMFKRRASKGQCFQQPCMGVREFPAHFAWVDDDGDFPASCLSENEANRDLGWMLHDIDFDHGNLPKFFRAEMKNGVIEVPPFYAEEVKA
>CP029206.1|AWI51008.1|1150105_1151080_-|IS30-like-element-ISApl1-family-transposase
MMSTSYRHLTINEREKIMILLAQGKKQAEIAKALGRSSSTISRELKRHALESYSATNAQNSYLKHRQNSKAQRKLEQPEYFNLVQEKFLTENWSPEQISARLKLEKSELSISYSTIYRGIYSGLFDIGERKASRKLRHKGKTRHTKNHHEKRGKIQISNHLNDRPISAQNRSRFGHWEADTVLGKAGGACLLTLTERKSRFELVKKIPAKKAEAVQKAMIELLDSHILRSITPDRGKEFAQHRLVTEALGVEFYFPEPHQPWTRGTNENTNGLLREYFPKHQDINQWSEVDIQQVINKLNLRPRKCLGWKTPYEVYFKKSLHLV
>CP029206.1|AWI51007.1|1147781_1149173_+|fibronectin-binding-protein-(FBP)
MCSVFYKIGVLKVNEKINVIKVRDDYEPIKFEPIDGSEKFKVCENQKSSWTDGEFSSKDLRSRIEPWLTSLFQSEHLSLLIGSGLTHAVHYLAAGRGAAGMSALSLSNYEDEINNKAKESANKTGRKEGNLEDQLRVANELLRGLEILGDLKADSLRNELNKGMTNFSQSILNSENGIATASDEKREAAFNALVTFLMSFASRIGVRDRLNIFTTNYDRLIEAGAEIAGLHLLDRFLGNLMPIFRSSRLDLDMHYNPPGIRGEPRYLEGVARYTKLHGSVDWVQTDRDIRRIGLPFGATDITPFLQAPSLNGATANELMIYPNAAKDRETAGYPYVELFRDFASAVCRPNSVLVTYGYSFGDEHINRVIRDMLTIPSTHLVVISYDDPLGRIMQTYEEMGRPSQISLMIGAELADLTKLTQNYLPKAAIDKTTFRMSELLKQRMGAVQSEKEQINQEDNNDLV
>CP029206.1|AWI51006.1|1145501_1147778_+|CRISPR-associated-helicase/endonuclease-Cas3
MREDMIYYAHSVENQPESQWQTLSNHLSQVGEMAAGFAAVFGAQETARYTGQLHDLGKYTEAFDKRLHGGPSVDHATAGAKIAIERFGDKAGKLMAFCIAGHHAGLANGDGEGDNRRTLTQRLALSFGIDIPKLDPVWQQEITLPEKLPAPPLKADAHHKWFFYAFFTRMLYSCLVDADFLDTEAFYVSRSVEKNTIQRGGHPDLNALQQRFNVFIESFRRPTEQAATEAEQRRAELNRLRSNILDHAVAQAGEAPGLFTLTVPTGGGKTFTSMAFALEHAKRYGMRRVIYIIPFTSIIEQNAAEFRKAFGDLGEAAVLEHHSTFDDSKLKNQHSKDKLRQASENWDMPVVVTTAVQFFESLFADRSSRCRKLHNIAGSVIILDEAQMLPLNLLLPVMQAIKELARNYRCSVVMCTATQPAVQAEHGFYRGFENVREIAPNPTALFEQLRRTTVQHIGLQTDVDLLEKLGQHRQMLIIVNNRRHARSLYDSAKQLDGVFHLTTLMCAKHRSQMLETIRGRLKNGEPCRVIATSLIEAGVDVDFPLVMRAEAGLDSVAQAAGRCNREGKRLPEESFVWIFQPEAQWKAPAELGLLSGVMRSVVRQYASDLLSVEAIASYFSEVYQLKGAELDQRRILAMHHNAGSSLNFPFQTIAAKFRMIETHMQPLIIPFDDEAERLIDGLRHADQIGGLLRKLQYYTVQIPESVLDALLKAGRIEAINEHTFGKQFYSLIGLDLYDEVAGFSWEDSNFIHSENFVF
>CP029206.1|AWI51014.1|1161979_1163137_-|chorismate-mutase
MSLDLSDIRTQITNLDRHILKLLSERHRLAFDVVRSKEITQKPLRDVVREKALLQELVNFAEAENYQLDPQYVTQIFQRIIEDSVLTQQHYLQNKLNEQKEDRVSIAFLGMRGSYSNMASRQFAKKYQGALVELSCASFKEVFDKVSNGEADFGVLPLENTTSGSINEVYDLLQHTDLALVGELAYPIKHCILANGNIDVSDIDTIYTHPQPAQQCSEFIQSLDRVHIKYCESSSHAMQMVARLNKPNIVALGNEDGGKLYGLTNIKTDIANQTNNITRFIVVAKQAINVSPQVQTKTLLLMTTTQQAGALVDALVVFKNHDIRMIKLESRPIYGKPWEEMFYVELEANMHNENTQKALAELKEVTSFLKVLGCYPSEIIEPVKI
>CP029206.1|AWI51015.1|1163264_1165295_-|oligopeptidase-A
MSNPLLNYTGLPAFSQIKAEHIQPAVEAVIKECRETIEKVAQIENPTWDNFYLPQAIAGDKFSRAWSPVSHLNGVKNSPELREAYQACLPLLSEYSTWAGQHQGLYQGYLKLKNSTEFATYSKAQQKTIENSLRDFELSGISLPADKQKRYGEVSARLSELGAEFSNNVLDATMGWDIIITDETQLKGLPESALEAAKLSAQSKGKEGYRFTLEFPSYFPVLTYCENRELRAMVYKEYATRASDQGSNAGKWDNSANIDEKLKLRLEMAQLLGFATYADLSLATKMAENPQQVVEFLENLANRSKEQGKKEICELKQFVKENYGVETLEPWDIAFYSEKQKQALYSINDEELRPYFPEDRVLSGLFELMKRIFGLRIEEKFGIDTWHEDVRFFQIYDENNEERGSFYLDLYARENKRGGAWMDDCINQKRLADGSLQKPVAYLTCNFNKPIGDKPALFTHDEVTTLFHEFGHGIHHMLTQIDVGDVAGINGVPWDAVELPSQFLENWCWEEEALQFISGHYETGEPLPKEKLTQLLKAKNFQAAMFVLRQLEFGLFDFRLHLAQPREGLVLDTLKAVKADVAVVKTPDWVRTPHSFSHIFAGGYAAGYYSYLWAEVLSADAFSKFEEEGIFNRQTGQSFLDNILTRGGSEEPMVLFERFRGRKPTLDALLRHKGIA
>CP029206.1|AWI51016.1|1165383_1166124_-|pyruvate-formate-lyase-1-activating-protein
MSVLARYHSYESCGTVDGPGIRFILFLQGCLMRCKYCHNRDTWDLDGGKEISVEDLMKEVVTYKHFMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGIDTCLDTNGFVRHYSPLVDEMLEVTDLVLLDLKQLNDEIHQDLIGVSNKRTLDFARYLQKLNKRTWIRYVVVPGYTDDDDSAHRLGQFIQGMENIEKVELLPYHRLGAHKWETLGYKYELEGVLPPPKEKLEHLKDIIESYGHTVKF
>CP029206.1|AWI51017.1|1166238_1167051_-|5'-nucleotidase,-lipoprotein-e(P4)-family
MKNIKMTLTALLISSSIVLSACSNKIEGDVQLQEQAVLGLNWVQQSGEYQALAYQAFNTAKLMFDQAKAPKGKKKAVVVDLDETMLDNSAYAGWQVRNGKAFDGKDWTRWVDARQTTAIAGAVEFNNYVNSHGGKMFYVSNRKDSTEKAGTLDDMKELGFTGVSEETLYLKKDKSNKSIRFAEIEKQGYEIVLYIGDNLNDFGDATYKKSNAERRAFVDQNSQEFGKKFIVLPNPNYGDWEGGLAKDYYKGDAQSRVKIRHDAVKAWDGK
>CP029206.1|AWI51018.1|1167189_1169514_-|formate-C-acetyltransferase
MTQLTEAQQKAWAGFTGGDWQTEVNVRDFIQKNYTPYEGDESFLAGATEATTKLWNEVMEKIKVENKTHEPYDIDCETPSTITSHKPGYIDQALEKIVGLQTDAPLKRAIMPFGGINMVKGSCKVYRRELNPEVEKIFTEYRKTHNQGVFDVYTPDILRCRKSGVITGLPDAYGRGRIIGDYRRLAVYGADFLMKDKQRQFASLQAKLESGEDIQATIQLREEIAEQHRALGKMKEMAASYGFDISNPATNAQEAVQWVYFAYLAAVKSQNGAAMSFGRVSSFLDIYIERDLKAGKITEEEAQELIDHLVMKLRMVRFLRTPEYDQLFSGDPMWATETLAGMGLDGRTLVTKTSFRILNTLYTMGPSPEPNLTILWSESLPEGFKHYAAKVSIDTSSVQYENDDLMRPDFENDDYAIACCVSPMVVGKQMQFFGARANLAKTLLYAINGGVDEKSGDQVGPKTDAITSEYLDYDDVMTRLDSFMDWLATQYVTALNIIHFMHDKYAYEAALMAFHDRDVFRTMACGIAGLSVAADSLSAIKYAKVKPIRTDIEIKNKAGEVVGVAKNVATDFEIEGEYPQFGNNDNRVDDIAVDLVERFMKKIQKLKTYRNATPTQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDYEAQKRNLAGLMDGYFHHEATVEGGQHLNVNVLNRETLLDAVEHPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTECM
>CP029206.1|AWI51019.1|1169609_1170434_-|formate-transporter-FocA
MFSPAEMAKIAEDGAVYKATKNQFYSFISAITAGAFIALAFVYYTTTQTGASDVAWGVSKFLGGTVFSVGVIMCVVFGAELFTSSTLTLVAKASHRITWAQMFKNWVVVYLGNFIGGLLIVALIWFAGQTMAANGQWGLTILKTAQHKIHHTWGEAFTLGILCNIMVCIAVWMAYAGKSLTDKAFIMILPIGLFVASGFEHCVANMFMIPMGILIAQSASPEFWQAIGVDAAQYADLDTYHFVVKNLIPVTLGNIVGGAFCIGMVQWFLHIRKH
>CP029206.1|AWI51979.1|1170636_1171134_+|DedA-family-protein
MTDYLLSFFSLFFSAENQLVTMFVSGFLSSTLLPGNSEVIFSTLAGQQILLDKALWSPSLVMLILVATFSNALGSFVTYLMGKLVPKPIDPKNRYAKWALAKSEKYGAVILLLSWLPLVGDLLCGIAGWLKFPVKQTLFYLIVGKFLRYLLLLFSVYPFVKYVVE
>CP029206.1|AWI51020.1|1171193_1171586_-|TIGR00156-family-protein
MKKALILTTLLAVSTVTVAKDGERHHGGFNDGTQRSQTQGFFDESAAVKTVADALKASDDTPAIIEGNIIKQIDKDEFIFKDSTGEIQIDVSKRAWNGQTISPADTIQIRGKVDTEWNKTEIDVKQIIKK
>CP029206.1|AWI51021.1|1171759_1172626_-|protease-HtpX
MAKRVILFLLTNLAITFVLGIVLNIIFKVTGIQGGSTAGILVMSMLFGFAGSLISLFMSKSMALRSVGAEVITQPRSGAEQWLFDTVKRQSQQANIPMPDIAIYHSADVNAFATGATKSNSLVAVSTGLLDNMTHDEAEAVVAHEIAHIANGDMVTMTLLQGVLNTFVIFLSRMISTAVASTKDENGNSSTNTLVFWVVDLLLQMVFGVLATMIAMWFSRYREFRADAGSAQLVGKEKMIAALQRLQSVHEPQAMEGSLAAFMINAPAKELFMSHPPLEKRIEALRNL
>CP029206.1|AWI51022.1|1172708_1173782_-|DNA-polymerase-IV
MQTKTRKIIHIDMDCFYAAVEMRENPTLQGKPIAVGGSADKRGVLTTCNYEARKFGLHSAMATAQAFKRCPNLILLPVNMPLYKSVSEQIHQIFQRYTHLIEPLSLDEAYLDVTDCEKYAGSATWIAQAIRQDIWQELKLTASAGIAPLKFLAKIASDQNKPNGQFVITPEEVNGFIQTLPLKKIPGVGKVTHEKLIQMGFHQCQDVQKANKALIYQEFGKFGQRLWDFCHGIDPREVEVNRPRKSLAVENTLLEDIDQLEVAEHFLDDLFHKLVFRIQRNWGDTPLHDFKKLAIKLKFDDFTQTTIERTTEGLTLQNFLLLLHQVWKRREGRKIRLIGLSVHFPDKKVANQLNLWE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029206_1	1.1\|1159442\|34\|CP029206\|CRISPRCasFinder,CRT	1159442-1159475	34	NZ_LR215001	Mycoplasma conjunctivae strain NCTC10147 plasmid 5	8150-8183	7	0.794
CP029206_1	1.1\|1159442\|34\|CP029206\|CRISPRCasFinder,CRT	1159442-1159475	34	MN694789	Marine virus AFVG_250M565, complete genome	1243-1276	8	0.765
CP029206_1	1.4\|1159641\|33\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1159641-1159673	33	NZ_CP006589	Hymenobacter sp. APR13 plasmid pHB, complete sequence	3475-3507	8	0.758
CP029206_1	1.7\|1159841\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1159841-1159874	34	NZ_AP019553	Athalassotoga saccharophila strain NAS-01 plasmid pATS2, complete sequence	13725-13758	8	0.765
CP029206_1	1.20\|1160706\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160706-1160739	34	MN693102	Marine virus AFVG_25M202, complete genome	7321-7354	8	0.765
CP029206_1	1.20\|1160706\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160706-1160739	34	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	941988-942021	8	0.765
CP029206_1	1.24\|1160972\|33\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160972-1161004	33	MH617769	Siphoviridae sp. isolate ctjc_2, complete genome	6342-6374	8	0.758
CP029206_1	1.1\|1159442\|34\|CP029206\|CRISPRCasFinder,CRT	1159442-1159475	34	AP014346	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S38-C5, * SEQUENCING IN PROGRESS *	785-818	9	0.735
CP029206_1	1.1\|1159442\|34\|CP029206\|CRISPRCasFinder,CRT	1159442-1159475	34	NZ_CP026096	Bacillus asahii strain OM18 plasmid pOM18, complete sequence	21138-21171	9	0.735
CP029206_1	1.13\|1160243\|35\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160243-1160277	35	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	259010-259044	9	0.743
CP029206_1	1.16\|1160442\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160442-1160475	34	NC_019699	Chroococcidiopsis thermalis PCC 7203 plasmid pCHRO.01, complete sequence	9093-9126	9	0.735
CP029206_1	1.20\|1160706\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160706-1160739	34	MN693331	Marine virus AFVG_25M281, complete genome	8261-8294	9	0.735
CP029206_1	1.20\|1160706\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160706-1160739	34	MN693233	Marine virus AFVG_25M109, complete genome	7912-7945	9	0.735
CP029206_1	1.20\|1160706\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160706-1160739	34	MN693319	Marine virus AFVG_25M488, complete genome	8390-8423	9	0.735
CP029206_1	1.20\|1160706\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160706-1160739	34	MN693334	Marine virus AFVG_25M282, complete genome	8249-8282	9	0.735
CP029206_1	1.20\|1160706\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160706-1160739	34	MN693110	Marine virus AFVG_25M284, complete genome	8265-8298	9	0.735
CP029206_1	1.20\|1160706\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160706-1160739	34	MN693488	Marine virus AFVG_25M519, complete genome	28621-28654	9	0.735
CP029206_1	1.20\|1160706\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160706-1160739	34	MN693237	Marine virus AFVG_25M495, complete genome	27351-27384	9	0.735
CP029206_1	1.20\|1160706\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160706-1160739	34	MN693463	Marine virus AFVG_25M283, complete genome	28574-28607	9	0.735
CP029206_1	1.20\|1160706\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160706-1160739	34	MN693061	Marine virus AFVG_25M430, complete genome	30351-30384	9	0.735
CP029206_1	1.24\|1160972\|33\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160972-1161004	33	NZ_CP015858	Lactobacillus plantarum strain LZ227 plasmid LZ227p1, complete sequence	60766-60798	9	0.727
CP029206_1	1.26\|1161104\|35\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1161104-1161138	35	NZ_CP015595	Acinetobacter sp. NCu2D-2 plasmid unnamed, complete sequence	201506-201540	9	0.743
CP029206_1	1.20\|1160706\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160706-1160739	34	MH791411	UNVERIFIED: Escherichia phage Ecwhy_1, complete genome	194731-194764	10	0.706
CP029206_1	1.20\|1160706\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160706-1160739	34	MT446416	UNVERIFIED: Escherichia virus TH47, complete genome	341467-341500	10	0.706
CP029206_1	1.22\|1160840\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160840-1160873	34	NC_019526	Enterobacteria phage vB_KleM-RaK2, complete genome	126619-126652	10	0.706
CP029206_1	1.22\|1160840\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160840-1160873	34	MT708547	Klebsiella phage Muenster, complete genome	249350-249383	10	0.706
CP029206_1	1.22\|1160840\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1160840-1160873	34	AB897757	Klebsiella phage K64-1 DNA, complete genome	126568-126601	10	0.706
CP029206_1	1.26\|1161104\|35\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1161104-1161138	35	NZ_CP044537	Borrelia sp. CA690 plasmid lp28-4, complete sequence	27820-27854	10	0.714
CP029206_1	1.36\|1161771\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1161771-1161804	34	NC_008386	Roseobacter denitrificans OCh 114 plasmid pTB1, complete sequence	89409-89442	10	0.706
CP029206_1	1.36\|1161771\|34\|CP029206\|CRISPRCasFinder,CRT,PILER-CR	1161771-1161804	34	NZ_CP027406	Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed1, complete sequence	80393-80426	10	0.706

1. spacer 1.1|1159442|34|CP029206|CRISPRCasFinder,CRT matches to NZ_LR215001 (Mycoplasma conjunctivae strain NCTC10147 plasmid 5) position: , mismatch: 7, identity: 0.794

tctaat--atgagaaaatcaagtttttttttttaaa	CRISPR spacer
--aaatgaatgagaaaataaagttttttatttagaa	Protospacer
   ***  ********** ********* *** .**

2. spacer 1.1|1159442|34|CP029206|CRISPRCasFinder,CRT matches to MN694789 (Marine virus AFVG_250M565, complete genome) position: , mismatch: 8, identity: 0.765

tctaatatgagaaaatcaagtttttttttttaaa---	CRISPR spacer
aagtatattagaaaatcaag---ttttttttaaattt	Protospacer
    **** ***********   ***********

3. spacer 1.4|1159641|33|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006589 (Hymenobacter sp. APR13 plasmid pHB, complete sequence) position: , mismatch: 8, identity: 0.758

agtggttggtagtttagctgttaaaccaaaaac	CRISPR spacer
atttattgctagtttagctgttaaactaaacgt	Protospacer
* * .*** *****************.*** ..

4. spacer 1.7|1159841|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019553 (Athalassotoga saccharophila strain NAS-01 plasmid pATS2, complete sequence) position: , mismatch: 8, identity: 0.765

ccata-tgtggggaaatcgggaaaaaaaaatttat	CRISPR spacer
-aatagcagtgggaaatcgtgaaagaaaaatttat	Protospacer
  *** ..  ********* ****.**********

5. spacer 1.20|1160706|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to MN693102 (Marine virus AFVG_25M202, complete genome) position: , mismatch: 8, identity: 0.765

attacaaatgtcttgatcgtttttggtttaaaag	CRISPR spacer
attacaaatggcttgatagtttttgtcgtatagt	Protospacer
********** ****** ******* . ** *.

6. spacer 1.20|1160706|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 8, identity: 0.765

attacaaatgtcttgatcgtttttggtttaaaag	CRISPR spacer
cttacaaatctcttgatggtttttgccctcaagg	Protospacer
 ******** ******* ******* ..* **.*

7. spacer 1.24|1160972|33|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to MH617769 (Siphoviridae sp. isolate ctjc_2, complete genome) position: , mismatch: 8, identity: 0.758

gtattataaagtagttattttgttttgtcaatc	CRISPR spacer
gcagcaaaaagtagttattttattttgacaaaa	Protospacer
*.* .* **************.***** ***

8. spacer 1.1|1159442|34|CP029206|CRISPRCasFinder,CRT matches to AP014346 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S38-C5, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.735

tctaatatgagaaaatcaagtttttttttttaaa	CRISPR spacer
taatatatgagaaagtcaagcttttttttcaact	Protospacer
*   **********.*****.********. *

9. spacer 1.1|1159442|34|CP029206|CRISPRCasFinder,CRT matches to NZ_CP026096 (Bacillus asahii strain OM18 plasmid pOM18, complete sequence) position: , mismatch: 9, identity: 0.735

tctaatatgagaaaatcaagtttttttttttaaa	CRISPR spacer
cgtgaagtacgaaaatcaagtttttattttgaaa	Protospacer
. *.* .*. *************** **** ***

10. spacer 1.13|1160243|35|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 9, identity: 0.743

ccatatatggaaaaatcaagttttattttataaaa	CRISPR spacer
atagtcataaaaaaatcaagtttaattttattaaa	Protospacer
 .*  .**..************* ******* ***

11. spacer 1.16|1160442|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to NC_019699 (Chroococcidiopsis thermalis PCC 7203 plasmid pCHRO.01, complete sequence) position: , mismatch: 9, identity: 0.735

gattga--caaaataatgctagaatttatcgtttga	CRISPR spacer
--ttaactcaaaagaatgcttgaatttatcgtccag	Protospacer
  **.*  ***** ****** ***********....

12. spacer 1.20|1160706|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to MN693331 (Marine virus AFVG_25M281, complete genome) position: , mismatch: 9, identity: 0.735

attacaaatgtcttgatcgtttttggtttaaaag	CRISPR spacer
attacaaatggcttgatagtttttgtcgtattgt	Protospacer
********** ****** ******* . **  .

13. spacer 1.20|1160706|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to MN693233 (Marine virus AFVG_25M109, complete genome) position: , mismatch: 9, identity: 0.735

attacaaatgtcttgatcgtttttggtttaaaag	CRISPR spacer
attacaaatggcttgatagtttttgtcgtattgt	Protospacer
********** ****** ******* . **  .

14. spacer 1.20|1160706|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to MN693319 (Marine virus AFVG_25M488, complete genome) position: , mismatch: 9, identity: 0.735

attacaaatgtcttgatcgtttttggtttaaaag	CRISPR spacer
attacaaatggcttgatagtttttgtcgtatcgt	Protospacer
********** ****** ******* . **  .

15. spacer 1.20|1160706|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to MN693334 (Marine virus AFVG_25M282, complete genome) position: , mismatch: 9, identity: 0.735

attacaaatgtcttgatcgtttttggtttaaaag	CRISPR spacer
attacaaatggcttgatagtttttgtcgtattgt	Protospacer
********** ****** ******* . **  .

16. spacer 1.20|1160706|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to MN693110 (Marine virus AFVG_25M284, complete genome) position: , mismatch: 9, identity: 0.735

attacaaatgtcttgatcgtttttggtttaaaag	CRISPR spacer
attacaaatggcttgatagtttttgtcgtattgt	Protospacer
********** ****** ******* . **  .

17. spacer 1.20|1160706|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to MN693488 (Marine virus AFVG_25M519, complete genome) position: , mismatch: 9, identity: 0.735

attacaaatgtcttgatcgtttttggtttaaaag	CRISPR spacer
attacaaatggcttgatagtttttgtcgtatcgt	Protospacer
********** ****** ******* . **  .

18. spacer 1.20|1160706|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to MN693237 (Marine virus AFVG_25M495, complete genome) position: , mismatch: 9, identity: 0.735

attacaaatgtcttgatcgtttttggtttaaaag	CRISPR spacer
attacaaatggcttgatagtttttgtcgtatcgt	Protospacer
********** ****** ******* . **  .

19. spacer 1.20|1160706|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to MN693463 (Marine virus AFVG_25M283, complete genome) position: , mismatch: 9, identity: 0.735

attacaaatgtcttgatcgtttttggtttaaaag	CRISPR spacer
attacaaatggcttgatagtttttgtcgtattgt	Protospacer
********** ****** ******* . **  .

20. spacer 1.20|1160706|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to MN693061 (Marine virus AFVG_25M430, complete genome) position: , mismatch: 9, identity: 0.735

attacaaatgtcttgatcgtttttggtttaaaag	CRISPR spacer
attacaaatggcttgatagtttttgtcgtattgt	Protospacer
********** ****** ******* . **  .

21. spacer 1.24|1160972|33|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015858 (Lactobacillus plantarum strain LZ227 plasmid LZ227p1, complete sequence) position: , mismatch: 9, identity: 0.727

gtattataaagtagttattttgttttgtcaatc	CRISPR spacer
tgattataaagtatttattttggttttgtcttc	Protospacer
  *********** ******** ***  .  **

22. spacer 1.26|1161104|35|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015595 (Acinetobacter sp. NCu2D-2 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.743

aggtat-tattttttattagtataataaataaacaa	CRISPR spacer
-ttcatatatttttcattagtataataaaaaaccgc	Protospacer
   .** *******.************** ** *.

23. spacer 1.20|1160706|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to MH791411 (UNVERIFIED: Escherichia phage Ecwhy_1, complete genome) position: , mismatch: 10, identity: 0.706

attacaaatgtcttgatcgtttttggtttaaaag	CRISPR spacer
acgtaaaatatctggatcgtttttggtttgtaca	Protospacer
*.   ****.*** ***************. * .

24. spacer 1.20|1160706|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to MT446416 (UNVERIFIED: Escherichia virus TH47, complete genome) position: , mismatch: 10, identity: 0.706

attacaaatgtcttgatcgtttttggtttaaaag	CRISPR spacer
acgtaaaatatctggatcgtttttggtttgtaca	Protospacer
*.   ****.*** ***************. * .

25. spacer 1.22|1160840|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to NC_019526 (Enterobacteria phage vB_KleM-RaK2, complete genome) position: , mismatch: 10, identity: 0.706

gaagaattggcaaatgataaattaaataaaagtt	CRISPR spacer
aatgaatgggcaaattataaattaaattagcaaa	Protospacer
.* **** ******* *********** *. .

26. spacer 1.22|1160840|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to MT708547 (Klebsiella phage Muenster, complete genome) position: , mismatch: 10, identity: 0.706

gaagaattggcaaatgataaattaaataaaagtt	CRISPR spacer
aatgaatgggcaaattataaattaaattagcaaa	Protospacer
.* **** ******* *********** *. .

27. spacer 1.22|1160840|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to AB897757 (Klebsiella phage K64-1 DNA, complete genome) position: , mismatch: 10, identity: 0.706

gaagaattggcaaatgataaattaaataaaagtt	CRISPR spacer
aatgaatgggcaaattataaattaaattagcaaa	Protospacer
.* **** ******* *********** *. .

28. spacer 1.26|1161104|35|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044537 (Borrelia sp. CA690 plasmid lp28-4, complete sequence) position: , mismatch: 10, identity: 0.714

aggtattattttttattagtataataaataaacaa	CRISPR spacer
tattattaatgtttattagtataataaacattaat	Protospacer
 . ***** * *****************.*   *

29. spacer 1.36|1161771|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to NC_008386 (Roseobacter denitrificans OCh 114 plasmid pTB1, complete sequence) position: , mismatch: 10, identity: 0.706

atatccagcttgcgcgccatatctagccctaaaa	CRISPR spacer
aagtccagcttgggcgccatatcgagcagcgcat	Protospacer
* .********* ********** ***  .. *

30. spacer 1.36|1161771|34|CP029206|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027406 (Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

atatccagcttgcgcgccatatctagccctaaaa	CRISPR spacer
aagtccagcttgggcgccatatcgagcagcgcat	Protospacer
* .********* ********** ***  .. *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

268982 : 274475

Enterobacteria_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI50233.1\|268982_269717_-	teichoic acid ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.8e-15	29.1
AWI51948.1\|269725_270511_-	ABC transporter	NA	NA	NA	NA
AWI50234.1\|270521_271064_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.6e-53	52.0
AWI50235.1\|271060_271939_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.7e-41	37.4
AWI50236.1\|271938_272817_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	4.4e-111	67.4
AWI50237.1\|272824_273889_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.0e-101	53.4
AWI50238.1\|274133_274475_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	7.2e-25	49.5

DBSCAN-SWA_2

1318854 : 1333200

uncultured_Mediterranean_phage(30.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI51135.1\|1318854_1320165_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	1.9e-129	58.8
AWI51136.1\|1320243_1320657_+	DUF2251 domain-containing protein	NA	NA	NA	NA
AWI51137.1\|1320670_1322485_-	ATP-dependent DNA helicase RecQ	A0A1V0SBK0	Catovirus	3.9e-85	37.2
AWI51138.1\|1322516_1322822_-	iron donor protein CyaY	NA	NA	NA	NA
AWI51139.1\|1322838_1323609_-	lipooligosaccharide biosynthesis protein LpsA	A0A1S5NQ44	Burkholderia_phage	3.0e-10	29.6
AWI51140.1\|1323622_1324183_-	GTP pyrophosphokinase	Q0H269	Geobacillus_phage	4.8e-18	31.2
AWI51141.1\|1324187_1325219_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.9e-111	58.0
AWI51142.1\|1325317_1326100_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AWI51143.1\|1326255_1327233_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	A0A2H4UV25	Bodo_saltans_virus	4.8e-05	28.5
AWI51144.1\|1327381_1327687_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	3.8e-09	35.9
AWI51145.1\|1327756_1329604_+	protein translocase subunit SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	3.1e-05	23.4
AWI51146.1\|1329614_1330589_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.3e-47	39.3
AWI51147.1\|1330736_1331240_+	non-heme ferritin	NA	NA	NA	NA
AWI51148.1\|1331239_1331737_+	non-heme ferritin	NA	NA	NA	NA
AWI51149.1\|1331898_1333200_+	permease	A0A0R6PHV4	Moraxella_phage	3.5e-181	82.2

DBSCAN-SWA_3

1435543 : 1445228

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI51249.1\|1435543_1437949_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	5.3e-231	55.4
AWI51250.1\|1438383_1439499_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.9e-50	35.7
AWI51251.1\|1439621_1440269_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.0e-43	42.8
AWI51252.1\|1440316_1441516_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	7.7e-106	49.5
AWI51253.1\|1441586_1442048_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.5e-41	56.8
AWI51254.1\|1442985_1443723_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
AWI51255.1\|1443753_1444143_-	RidA family protein	NA	NA	NA	NA
AWI51256.1\|1444226_1445228_+	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	2.2e-69	43.2

DBSCAN-SWA_4

1602766 : 1686279

Haemophilus_virus(38.46%)

tRNA,transposase,capsid,portal,holin,protease,head,tail,terminase,integrase

attL 1602306:1602324|attR 1629360:1629378

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1602306:1602324	attL	NA	NA	NA	NA
AWI51376.1\|1602766_1603756_-\|integrase	site-specific integrase	A0A0M3LQN1	Mannheimia_phage	7.0e-97	56.8
AWI51377.1\|1604160_1604493_-	DUF496 domain-containing protein	NA	NA	NA	NA
AWI51378.1\|1604710_1606228_+	exopolyphosphatase	NA	NA	NA	NA
AWI51379.1\|1606426_1606894_+	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA
AWI51380.1\|1606910_1607810_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AWI51381.1\|1607935_1609024_+	3-phosphoserine/phosphohydroxythreonine aminotransferase	M1Q1P2	Streptococcus_phage	3.0e-85	46.6
AWI51382.1\|1609156_1610254_+	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	3.6e-17	24.6
AWI51383.1\|1610331_1610940_+	DNA glycosylase	NA	NA	NA	NA
AWI51384.1\|1610929_1611751_+	PHP domain-containing protein	NA	NA	NA	NA
AWI51385.1\|1611984_1612995_-\|integrase	integrase	Q1I119	Pasteurella_virus	4.6e-96	52.5
AWI51386.1\|1613011_1613275_-	hypothetical protein	A0A0R6PIB1	Moraxella_phage	1.0e-10	61.0
AWI51387.1\|1613310_1614156_-	hypothetical protein	NA	NA	NA	NA
AWI51388.1\|1614160_1614850_-	phage repressor	A0A0M3LPF9	Mannheimia_phage	3.8e-73	61.6
AWI51389.1\|1614997_1615207_+	transcriptional regulator	Q19UN8	Mannheimia_phage	7.0e-15	62.5
AWI51390.1\|1615190_1615412_+	regulator	NA	NA	NA	NA
AWI51391.1\|1615420_1615678_+	hypothetical protein	NA	NA	NA	NA
AWI51392.1\|1615674_1615881_+	hypothetical protein	NA	NA	NA	NA
AWI51393.1\|1615871_1616078_+	hypothetical protein	NA	NA	NA	NA
AWI51394.1\|1616074_1616368_+	hypothetical protein	Q19US9	Mannheimia_phage	1.8e-24	51.8
AWI51395.1\|1616364_1618716_+	replication endonuclease	Q19US8	Mannheimia_phage	2.6e-307	67.1
AWI51396.1\|1618726_1618951_+	hypothetical protein	NA	NA	NA	NA
AWI51397.1\|1618953_1619265_+	hypothetical protein	NA	NA	NA	NA
AWI51398.1\|1619335_1619596_+	hypothetical protein	NA	NA	NA	NA
AWI51399.1\|1619606_1620062_+	hypothetical protein	S5M9Z4	Pseudoalteromonas_phage	5.2e-31	48.9
AWI51400.1\|1620054_1620462_+	hypothetical protein	NA	NA	NA	NA
AWI51401.1\|1620481_1620697_-	hypothetical protein	NA	NA	NA	NA
AWI51402.1\|1620999_1621275_-	transcriptional regulator	Q1I103	Pasteurella_virus	1.4e-23	57.5
AWI51403.1\|1621349_1622378_-\|portal	phage portal protein	Q94MZ7	Haemophilus_virus	3.9e-151	77.0
AWI51404.1\|1622380_1624186_-\|terminase	terminase	Q94MZ6	Haemophilus_virus	7.2e-257	71.7
AWI51987.1\|1624392_1625244_+\|capsid	phage capsid protein	Q94MZ5	Haemophilus_virus	9.4e-50	62.7
AWI51405.1\|1625246_1626275_+\|capsid	phage major capsid protein, P2 family	Q1I0Z9	Pasteurella_virus	2.3e-114	62.1
AWI51406.1\|1626277_1627114_+\|terminase	terminase	Q94MZ3	Haemophilus_virus	5.2e-93	61.2
AWI51407.1\|1627113_1627566_+\|head	head stabilization protein	Q94MZ2	Haemophilus_virus	2.8e-53	70.7
AWI51408.1\|1627553_1628030_+	hypothetical protein	Q94MZ1	Haemophilus_virus	1.2e-49	58.0
AWI51988.1\|1628044_1628716_+	hypothetical protein	Q1I0Z5	Pasteurella_virus	4.5e-47	52.9
AWI51409.1\|1628731_1629862_+	DUF2586 domain-containing protein	Q94MY9	Haemophilus_virus	1.5e-164	73.6
1629360:1629378	attR	NA	NA	NA	NA
AWI51410.1\|1629865_1630318_+	DUF2597 domain-containing protein	Q94MY8	Haemophilus_virus	1.0e-63	80.6
AWI51411.1\|1630440_1630680_+\|holin	holin	Q94MY7	Haemophilus_virus	6.3e-20	61.3
AWI51412.1\|1630666_1631212_+	lysozyme	Q94MY6	Haemophilus_virus	4.3e-48	54.5
AWI51413.1\|1631213_1631537_+	hypothetical protein	NA	NA	NA	NA
AWI51414.1\|1631734_1632046_+	hypothetical protein	Q1I0Y9	Pasteurella_virus	2.9e-33	70.3
AWI51415.1\|1632250_1634377_+\|tail	phage tail tape measure protein	Q1I0Y7	Pasteurella_virus	1.7e-135	44.4
AWI51416.1\|1634376_1634709_+	DUF2590 domain-containing protein	Q94MY3	Haemophilus_virus	1.7e-39	76.9
AWI51417.1\|1634705_1635878_+	hypothetical protein	Q94MY2	Haemophilus_virus	4.8e-137	62.2
AWI51989.1\|1635873_1636401_+\|tail	phage tail protein	Q1I0Y4	Pasteurella_virus	2.1e-52	60.0
AWI51418.1\|1639153_1639852_+\|tail	phage tail protein	A0A0M3LRX2	Mannheimia_phage	2.7e-63	59.2
AWI51419.1\|1639848_1640094_+	DNA helicase UvrD	A0A0M3LNN9	Mannheimia_phage	1.1e-22	70.0
AWI51420.1\|1640113_1640881_+	hypothetical protein	Q94MX8	Haemophilus_virus	2.5e-81	61.9
AWI51421.1\|1640864_1641452_+	hypothetical protein	Q94MX7	Haemophilus_virus	2.0e-51	77.4
AWI51422.1\|1641453_1643055_+	hypothetical protein	Q94MX6	Haemophilus_virus	5.1e-214	68.3
AWI51423.1\|1643496_1643952_-	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA
AWI51424.1\|1643952_1644198_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA
AWI51425.1\|1644296_1644776_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
AWI51426.1\|1644889_1645906_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
AWI51427.1\|1646143_1646566_+	hypothetical protein	NA	NA	NA	NA
AWI51428.1\|1646651_1648043_-	dehydrogenase	NA	NA	NA	NA
AWI51429.1\|1648235_1648652_+	hypothetical protein	NA	NA	NA	NA
AWI51430.1\|1648667_1649087_+	MarR family transcriptional regulator	NA	NA	NA	NA
AWI51431.1\|1649168_1650113_-	AraC family transcriptional regulator	NA	NA	NA	NA
AWI51432.1\|1650424_1650934_-	DNA-binding protein	NA	NA	NA	NA
AWI51433.1\|1652111_1653029_+\|tail	phage tail protein	A0A0C4UQS1	Shigella_phage	2.9e-44	41.0
AWI51990.1\|1654626_1656579_+	hypothetical protein	NA	NA	NA	NA
AWI51434.1\|1657033_1657579_+	hypothetical protein	NA	NA	NA	NA
AWI51435.1\|1657562_1658006_-	DNA repair protein	NA	NA	NA	NA
AWI51436.1\|1658005_1659046_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
AWI51991.1\|1659130_1659472_+	XRE family transcriptional regulator	NA	NA	NA	NA
AWI51437.1\|1659753_1659966_+\|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	NA	NA	NA	NA
AWI51438.1\|1659981_1660896_+	restriction endonuclease	NA	NA	NA	NA
AWI51439.1\|1660895_1664144_+	helicase	A0A1V0SII8	Klosneuvirus	3.8e-06	32.6
AWI51440.1\|1664146_1665106_+	hypothetical protein	F2Y298	Organic_Lake_phycodnavirus	1.5e-40	35.1
AWI51441.1\|1665163_1665760_-	hypothetical protein	NA	NA	NA	NA
AWI51442.1\|1665770_1665980_-	XRE family transcriptional regulator	NA	NA	NA	NA
AWI51443.1\|1666511_1666931_+	hypothetical protein	NA	NA	NA	NA
AWI51444.1\|1667209_1668346_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
AWI51445.1\|1668767_1670150_-	two-component sensor histidine kinase	A0A1B0VMK3	Pseudomonas_phage	7.4e-12	25.9
AWI51446.1\|1670139_1670838_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.0e-29	35.1
AWI51447.1\|1671346_1671667_+	hypothetical protein	NA	NA	NA	NA
AWI51448.1\|1671828_1672284_+	metal-binding protein	NA	NA	NA	NA
AWI51449.1\|1672295_1673843_+	bilirubin oxidase	NA	NA	NA	NA
AWI51450.1\|1674210_1675296_+	23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM	NA	NA	NA	NA
AWI51451.1\|1675594_1677613_+	excinuclease ABC subunit B	NA	NA	NA	NA
AWI51452.1\|1677629_1678148_+	hypothetical protein	NA	NA	NA	NA
AWI51453.1\|1678138_1678402_-	hypothetical protein	G3M9Y6	Bacillus_virus	2.6e-06	45.6
AWI51454.1\|1678403_1680392_-	iron ABC transporter permease	NA	NA	NA	NA
AWI51455.1\|1680479_1681526_-	hypothetical protein	NA	NA	NA	NA
AWI51456.1\|1682320_1683865_+	exodeoxyribonuclease I	NA	NA	NA	NA
AWI51457.1\|1683927_1684302_-	invasion protein expression up-regulator SirB	NA	NA	NA	NA
AWI51458.1\|1684302_1684836_-	ribosome-associated protein	NA	NA	NA	NA
AWI51459.1\|1684929_1686279_+\|protease	metalloprotease PmbA	NA	NA	NA	NA

DBSCAN-SWA_5

2125258 : 2132392

Organic_Lake_phycodnavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI51826.1\|2125258_2126917_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	4.7e-21	26.5
AWI51827.1\|2126903_2128658_-	ABC transporter ATP-binding protein	A0A076FI99	Aureococcus_anophage	9.1e-15	25.1
AWI51828.1\|2128949_2129621_-	uracil-DNA glycosylase	A0A0R5YU95	Harp_seal_herpesvirus	4.4e-50	50.7
AWI51829.1\|2129802_2130189_+	autonomous glycyl radical cofactor GrcA	A0A088FS37	Shigella_phage	2.4e-32	61.4
AWI51830.1\|2130357_2130804_+	transcriptional regulator	NA	NA	NA	NA
AWI51831.1\|2130852_2131440_-	hypothetical protein	S5MM68	Bacillus_phage	3.4e-14	39.8
AWI51832.1\|2131552_2132392_-	deoxyribonuclease IV	A0A1V0SBL9	Catovirus	1.8e-29	33.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage