CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028895	Vibrio cholerae strain A1552 chromosome 2, complete sequence	0 crisprs	PD-DExK,csa3,cas3	0	0	0	0
CP028894	Vibrio cholerae strain A1552 chromosome 1, complete sequence	0 crisprs	DinG,csa3,DEDDh,cas3,WYL,csx1,RT	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

275451 : 284069

Shigella_phage(28.57%)

integrase,tRNA

attL 276531:276543|attR 283178:283190

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB73060.1\|275451_275760_+	hypothetical protein	Q716C1	Shigella_phage	1.3e-30	74.2
AWB73061.1\|275759_276629_+	hypothetical protein	Q716C2	Shigella_phage	2.8e-113	65.6
276531:276543	attL	NA	NA	NA	NA
AWB73062.1\|276664_277906_-\|integrase	Prophage integrase IntA	A0A1V0E8G8	Vibrio_phage	9.1e-110	47.3
AWB73063.1\|278291_280169_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.5e-34	32.9
AWB73064.1\|280267_282031_-	DNA primase	A0A1S5RG58	Helicobacter_phage	1.1e-44	30.7
AWB73065.1\|282120_282564_-	hypothetical protein	A0A292GL36	Xanthomonas_phage	3.7e-29	49.3
AWB73066.1\|282593_282809_-	30S ribosomal protein S21	NA	NA	NA	NA
AWB73067.1\|283049_284069_+\|tRNA	tRNA N6-adenosine threonylcarbamoyltransferase	A0A0R6PI74	Moraxella_phage	2.6e-107	57.4
283178:283190	attR	NA	NA	NA	NA

DBSCAN-SWA_2

290238 : 297456

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB73077.1\|290238_290991_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	8.0e-69	53.3
AWB73078.1\|290983_291610_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.0e-36	52.1
AWB73079.1\|291609_292539_+	Murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	7.7e-05	34.7
AWB73080.1\|292612_293620_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.0e-35	34.2
AWB73081.1\|293712_296298_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	2.2e-33	23.0
AWB73082.1\|296568_297456_-	Cysteine synthase B	A0A1X9I5K7	Streptococcus_phage	4.1e-56	41.1

DBSCAN-SWA_3

529079 : 536272

Faustovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB73273.1\|529079_530294_+	Cysteine desulfurase IscS	A0A0H3TPH2	Faustovirus	1.1e-32	30.5
AWB73274.1\|530330_530714_+	Iron-sulfur cluster assembly scaffold protein IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
AWB73275.1\|530774_531098_+	Iron-binding protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.0e-25	50.5
AWB73276.1\|531146_531662_+	Co-chaperone protein HscB	NA	NA	NA	NA
AWB73277.1\|531685_533536_+	Chaperone protein HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	5.3e-106	41.1
AWB73278.1\|533549_533888_+	2Fe-2S ferredoxin	NA	NA	NA	NA
AWB73279.1\|533936_534131_+	hypothetical protein	NA	NA	NA	NA
AWB73280.1\|534350_535640_+	Peptidase B	Q6GYZ8	Mycoplasma_phage	1.7e-34	34.3
AWB73281.1\|535843_536272_+	Nucleoside diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.0e-20	38.4

DBSCAN-SWA_4

1275278 : 1307896

Vibrio_phage(47.37%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB73925.1\|1275278_1277387_-	Leukotoxin export ATP-binding protein LtxB	W8CYL7	Bacillus_phage	4.9e-39	27.1
AWB73926.1\|1277810_1278158_+	hypothetical protein	NA	NA	NA	NA
AWB73927.1\|1278249_1278645_+	Leukotoxin-activating lysine-acyltransferase LtxC	NA	NA	NA	NA
AWB73928.1\|1278668_1292306_+	Multifunctional-autoprocessing repeats-in-toxin	B3Y8K3	Vibrio_virus	8.4e-07	100.0
AWB73929.1\|1292673_1292898_-	hypothetical protein	U5TMI6	Satellite_phage	1.1e-34	100.0
AWB73930.1\|1292991_1293363_-	hypothetical protein	U5TMH5	Satellite_phage	3.3e-68	100.0
AWB73931.1\|1293343_1294423_-	hypothetical protein	U5TQR3	Satellite_phage	2.2e-213	100.0
AWB73932.1\|1294548_1294887_+	hypothetical protein	U5TNA1	Satellite_phage	7.3e-54	100.0
AWB73933.1\|1295499_1295874_-	Cholera enterotoxin subunit B	Q77DH7	Vibrio_virus	7.8e-65	100.0
AWB73934.1\|1295870_1296647_-	Cholera enterotoxin subunit A	A0A142I6Y0	Vibrio_phage	1.3e-151	100.0
AWB73935.1\|1296745_1297945_-	Zona occludens toxin	A0A142I6Z1	Vibrio_phage	5.3e-240	100.0
AWB73936.1\|1297941_1298226_-	hypothetical protein	A0A0F6YNQ7	Vibrio_phage	4.0e-45	100.0
AWB73937.1\|1298231_1299419_-	hypothetical protein	A0A142I701	Vibrio_phage	1.4e-200	100.0
AWB73938.1\|1299525_1299774_-	hypothetical protein	A0A0N7F140	Vibrio_phage	8.8e-33	100.0
AWB73939.1\|1299766_1299910_-	hypothetical protein	NA	NA	NA	NA
AWB73940.1\|1299909_1300287_-	hypothetical protein	A0A0N9HJ67	Vibrio_phage	3.1e-69	100.0
AWB73941.1\|1300267_1301347_-	hypothetical protein	U5TQR3	Satellite_phage	2.2e-213	100.0
AWB73942.1\|1301472_1301811_+	hypothetical protein	U5TNA1	Satellite_phage	7.3e-54	100.0
AWB73943.1\|1302300_1302885_-	hypothetical protein	E3U9I9	Vibrio_phage	6.4e-114	100.0
AWB73944.1\|1302877_1303045_-	hypothetical protein	E3U9J0	Vibrio_phage	2.3e-13	100.0
AWB73945.1\|1303122_1303815_-	hypothetical protein	NA	NA	NA	NA
AWB73946.1\|1303944_1304229_-	hypothetical protein	NA	NA	NA	NA
AWB73947.1\|1304233_1305802_-	hypothetical protein	A7BJY2	Enterobacteria_phage	2.7e-58	32.3
AWB73948.1\|1305978_1306530_+	hypothetical protein	NA	NA	NA	NA
AWB73949.1\|1307568_1307736_-	hypothetical protein	NA	NA	NA	NA
AWB73950.1\|1307728_1307896_-	hypothetical protein	E3U9J0	Vibrio_phage	2.3e-13	100.0

DBSCAN-SWA_5

1353078 : 1361895

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB73993.1\|1353078_1354269_-	hypothetical protein	M4MA06	Vibrio_phage	1.3e-36	33.3
AWB73994.1\|1354367_1355216_-	hypothetical protein	Q6JIM8	Burkholderia_virus	7.0e-29	39.1
AWB73995.1\|1355178_1356504_-	hypothetical protein	M4MHV5	Vibrio_phage	1.2e-75	38.9
AWB73996.1\|1356513_1358274_-	hypothetical protein	A0A0K1LKI4	Staphylococcus_phage	1.1e-81	35.9
AWB73997.1\|1358282_1358465_-	hypothetical protein	NA	NA	NA	NA
AWB73998.1\|1358464_1358680_-	hypothetical protein	NA	NA	NA	NA
AWB73999.1\|1358707_1359388_-	hypothetical protein	NA	NA	NA	NA
AWB74000.1\|1359384_1359990_-	hypothetical protein	NA	NA	NA	NA
AWB74001.1\|1359970_1360477_-	hypothetical protein	K7PHI2	Enterobacteria_phage	1.1e-05	27.1
AWB74002.1\|1360851_1361040_-	hypothetical protein	NA	NA	NA	NA
AWB74003.1\|1361250_1361895_+	hypothetical protein	G0YPX7	Erwinia_phage	1.1e-10	33.5

DBSCAN-SWA_6

1366550 : 1374277

Diadromus_pulchellus_ascovirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB74012.1\|1366550_1367138_-	Thymidylate kinase	F2NYY4	Diadromus_pulchellus_ascovirus	2.1e-08	33.1
AWB74013.1\|1367157_1367427_-	hypothetical protein	NA	NA	NA	NA
AWB74014.1\|1367631_1368225_-	Deoxyadenosine/deoxycytidine kinase	A0A249Y6S3	Cherax_quadricarinatus_iridovirus	3.7e-08	30.0
AWB74015.1\|1368235_1368358_-	hypothetical protein	NA	NA	NA	NA
AWB74016.1\|1368357_1368615_-	hypothetical protein	NA	NA	NA	NA
AWB74017.1\|1368611_1369109_-	hypothetical protein	A0A142K9B6	Gordonia_phage	6.8e-08	51.9
AWB74018.1\|1369078_1369939_-	Flap endonuclease Xni	F1D0G7	Vibrio_phage	3.1e-56	43.0
AWB74019.1\|1370132_1370564_-	hypothetical protein	Q1MVI3	Enterobacteria_phage	2.1e-29	47.9
AWB74020.1\|1370588_1372643_-	DNA polymerase I	A0A0F7DD46	Delftia_phage	7.1e-144	40.8
AWB74021.1\|1372642_1374277_-	DNA primase	L7TLT7	Rhizobium_phage	1.6e-122	49.0

DBSCAN-SWA_7

1711892 : 1718792

Vibrio_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB74303.1\|1711892_1712069_-	hypothetical protein	A0A1V0E8E5	Vibrio_phage	2.8e-09	51.9
AWB74304.1\|1712212_1712689_+	hypothetical protein	NA	NA	NA	NA
AWB74305.1\|1712685_1712823_+	hypothetical protein	NA	NA	NA	NA
AWB74306.1\|1712918_1713485_-	hypothetical protein	M4MHE6	Vibrio_phage	7.5e-11	31.4
AWB74307.1\|1713610_1714237_-	hypothetical protein	Q716C2	Shigella_phage	1.1e-92	72.9
AWB74308.1\|1714479_1714788_-	hypothetical protein	Q716C1	Shigella_phage	7.1e-32	76.3
AWB74309.1\|1714830_1715871_-	hypothetical protein	A0A2I7S9D9	Vibrio_phage	2.6e-126	72.5
AWB74310.1\|1716005_1716365_-	hypothetical protein	A0A2I7S9E0	Vibrio_phage	3.7e-40	67.8
AWB74311.1\|1716413_1716785_-	hypothetical protein	NA	NA	NA	NA
AWB74312.1\|1716845_1717424_-	hypothetical protein	NA	NA	NA	NA
AWB74313.1\|1717442_1717763_-	hypothetical protein	NA	NA	NA	NA
AWB74314.1\|1717749_1718124_-	hypothetical protein	NA	NA	NA	NA
AWB74315.1\|1718525_1718792_-	hypothetical protein	M1Q554	Vibrio_phage	1.4e-07	33.8

DBSCAN-SWA_8

2198888 : 2205505

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB74753.1\|2198888_2199359_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.8e-34	48.7
AWB74754.1\|2199623_2200733_-	Riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	6.7e-64	39.8
AWB74755.1\|2200773_2201427_-	Riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.2e-31	38.2
AWB74756.1\|2201431_2202535_-	Riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	1.3e-43	33.1
AWB74757.1\|2202560_2203010_-	Transcriptional repressor NrdR	NA	NA	NA	NA
AWB74758.1\|2203109_2204360_-	Gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	5.0e-100	49.5
AWB74759.1\|2204371_2205505_-	Glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.4e-64	40.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage