CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029087	Staphylococcus aureus strain AR461 chromosome, complete genome	10 crisprs	cas3,DEDDh,DinG,csa3,RT,WYL	5	1	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029087_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029087_1

425345-425446

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029087_1

>merge|CP029087|1|425345-425446|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>CP029087|1|1|425345-425446|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP029087.1\|AWE66087.1\|416051_416315_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238045
CP029087.1\|AWE66241.1\|430145_431612_+\|inosine-5'-monophosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
CP029087.1\|AWE67831.1\|418591_419218_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380196
CP029087.1\|AWE67800.1\|425462_426419_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
CP029087.1\|AWE66901.1\|422261_423017_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
CP029087.1\|AWE67665.1\|426536_427199_-\|hypothetical-protein	unknown	unknown	unknown
CP029087.1\|AWE68154.1\|435321_435594_-\|transposase-family-protein	unknown	unknown	gnl\|CDD\|225511
CP029087.1\|AWE67774.1\|421200_421770_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
CP029087.1\|AWE67295.1\|419290_419536_-\|hypothetical-protein	unknown	unknown	unknown
CP029087.1\|AWE67325.1\|417938_418322_-\|putative-membrane-protein	unknown	unknown	unknown
CP029087.1\|AWE66816.1\|434218_434923_-\|pemK-like-family-protein	unknown	unknown	gnl\|CDD\|367091
CP029087.1\|AWE66906.1\|423096_424485_-\|L-cystine-uptake-protein-TcyP	unknown	unknown	gnl\|CDD\|224736
CP029087.1\|AWE67304.1\|427341_427749_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584
CP029087.1\|AWE65951.1\|428261_428840_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
CP029087.1\|AWE67288.1\|431636_433178_+\|GMP-synthase	unknown	unknown	gnl\|CDD\|234614
CP029087.1\|AWE67877.1\|428839_430108_+\|xanthine-permease-family-protein	unknown	unknown	gnl\|CDD\|274468
CP029087.1\|AWE66506.1\|419661_421185_-\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
CP029087.1\|AWE66076.1\|417291_417873_+\|histidine-phosphatase-super-family-protein	unknown	unknown	gnl\|CDD\|223483
CP029087.1\|AWE66342.1\|416614_416866_+\|transglycosylase-associated-family-protein	unknown	unknown	gnl\|CDD\|225170
CP029087.1\|AWE66604.1\|433290_433827_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP029087.1\|AWE66087.1\|416051_416315_-\|hypothetical-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.0037414
CP029087.1\|AWE66241.1\|430145_431612_+\|inosine-5'-monophosphate-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
CP029087.1\|AWE67831.1\|418591_419218_-\|hypothetical-protein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.15385e-71
CP029087.1\|AWE66901.1\|422261_423017_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	4.50551e-88
CP029087.1\|AWE68154.1\|435321_435594_-\|transposase-family-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.23077e-11
CP029087.1\|AWE67774.1\|421200_421770_-\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124
CP029087.1\|AWE67304.1\|427341_427749_-\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.17298e-12
CP029087.1\|AWE67800.1\|425462_426419_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00265416
CP029087.1\|AWE66816.1\|434218_434923_-\|pemK-like-family-protein	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	5.38181e-08
CP029087.1\|AWE66906.1\|423096_424485_-\|L-cystine-uptake-protein-TcyP	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
CP029087.1\|AWE65951.1\|428261_428840_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	1.38815e-118
CP029087.1\|AWE67288.1\|431636_433178_+\|GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
CP029087.1\|AWE67877.1\|428839_430108_+\|xanthine-permease-family-protein	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	5.74823e-170
CP029087.1\|AWE66506.1\|419661_421185_-\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
CP029087.1\|AWE66076.1\|417291_417873_+\|histidine-phosphatase-super-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	2.4566e-49
CP029087.1\|AWE66342.1\|416614_416866_+\|transglycosylase-associated-family-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.58864e-09

>CP029087.1|AWE66906.1|423096_424485_-|L-cystine-uptake-protein-TcyP
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLVYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKRAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLIILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFESNDNAALTSH
>CP029087.1|AWE66901.1|422261_423017_+|NADPH-dependent-oxidoreductase
MSDYVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>CP029087.1|AWE67774.1|421200_421770_-|peroxiredoxin
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>CP029087.1|AWE66506.1|419661_421185_-|alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDEKSKELKELLTEISDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKNLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMSTGEEHLLNLDGIFVQIGLLPNTSWLKDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>CP029087.1|AWE67295.1|419290_419536_-|hypothetical-protein
MYLSQTNQYENDIEKEKYVNEIIMLLRTIPTSKLIQPIMQLFIDNAILNIVQNDALLIEKATHARNHLRLWSLQGHRDIPN
>CP029087.1|AWE67831.1|418591_419218_-|hypothetical-protein
MKKRLLLSTFLASALILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>CP029087.1|AWE67325.1|417938_418322_-|putative-membrane-protein
MKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIILMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFISAIITLAIGGKSVDKNDSH
>CP029087.1|AWE66076.1|417291_417873_+|histidine-phosphatase-super-family-protein
MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLCDYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISANPKYEKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQKDDIVIVAHQVVIRCLMVYFNKVSREEAVDLKVENCKPYIIE
>CP029087.1|AWE66342.1|416614_416866_+|transglycosylase-associated-family-protein
MFGFIGMLIVGGLIGWAAGAIMGKDIPGGILGNIIAGIIGSWVGGKLFGQWGPELGSIYILPALIGSIILIAIVTLILRAMRK
>CP029087.1|AWE66087.1|416051_416315_-|hypothetical-protein
MNMHILYNLRTKHNLEIDELAQQLNEKYGTKYEAHQIWEWENHHHEPKFKDAMHLADFFDAPYEMFLESKVKEYQKHLEEVDIRMDK
>CP029087.1|AWE67800.1|425462_426419_-|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKVLAESTNKVEKNAVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQSKNENAAETSNKEATVDADAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL
>CP029087.1|AWE67665.1|426536_427199_-|hypothetical-protein
MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEEMDLRKPF
>CP029087.1|AWE67304.1|427341_427749_-|hypothetical-protein
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHKEVQEHNSAYEEIDITHFAEASKGPKA
>CP029087.1|AWE65951.1|428261_428840_+|xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKNKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVVEE
>CP029087.1|AWE67877.1|428839_430108_+|xanthine-permease-family-protein
MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILVLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVK
>CP029087.1|AWE66241.1|430145_431612_+|inosine-5'-monophosphate-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>CP029087.1|AWE67288.1|431636_433178_+|GMP-synthase
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCKGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>CP029087.1|AWE66604.1|433290_433827_-|hypothetical-protein
MHNKNEFNKKLKDFIGSDKRMALVKGYINEYKLTTVLRALNNSDYTKGTIHTRSIGNLKQIVDNRIIPKNITQNKIFKLSNLTLEVNLYERNTIYHGDFAIYYPVESALIIETDTPRLINHINNNPVQKIFIITTNDWSFNTLELEKIVDETIIYDLKQEDPKQYEILYKNKHGKLPY
>CP029087.1|AWE66816.1|434218_434923_-|pemK-like-family-protein
MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYSIAIHSDVTSNKKRYYKSFSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTIVPLSSKGNKNYLKLNESVLNLTATDLKKQIIDISSKVQALTQKYRDIDIKLSTEDKKLLSNLNQKANELYRVIGVYSKHKGKDTYVNISAITTISKRRISKINDSDPTGTIIISEDDMNEIEKQLKIKFFSN
>CP029087.1|AWE68154.1|435321_435594_-|transposase-family-protein
MTKERRTFSSEFKLQMVRLYKNGKLKNEIIRKYDLKPSIISNSIKQHQNTGPFNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI

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Crispr_ID: CP029087_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029087_2

779228-779310

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029087_2

>merge|CP029087|2|779228-779310|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>CP029087|2|2|779228-779310|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP029087.1\|AWE67174.1\|765167_765776_+\|aminotransferase-class-IV-family-protein	unknown	unknown	gnl\|CDD\|376449
CP029087.1\|AWE66650.1\|777139_778198_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235106
CP029087.1\|AWE67183.1\|781144_782650_-\|H+-symporter-family-protein	unknown	unknown	gnl\|CDD\|225646
CP029087.1\|AWE67821.1\|782990_783491_-\|7-cyano-7-deazaguanine-reductase	unknown	unknown	gnl\|CDD\|223851
CP029087.1\|AWE67154.1\|790065_791022_+\|fecCD-transport-family-protein	unknown	unknown	gnl\|CDD\|226964
CP029087.1\|AWE66924.1\|783510_784377_-\|multidrug-resistance-efflux-transporter-family-protein	unknown	unknown	gnl\|CDD\|223769
CP029087.1\|AWE66562.1\|775385_776900_+\|binding-protein-dependent-transport-system-inner-membrane-component-family-protein	unknown	unknown	gnl\|CDD\|270328
CP029087.1\|AWE67030.1\|778536_779079_+\|putative-5'(3')-deoxyribonucleotidase	unknown	unknown	gnl\|CDD\|226895
CP029087.1\|AWE65770.1\|785538_787644_+\|ribonucleoside-diphosphate-reductase,-alpha-subunit	unknown	unknown	gnl\|CDD\|236069
CP029087.1\|AWE65586.1\|768307_770248_+\|lipoteichoic-acid-synthase	unknown	unknown	gnl\|CDD\|224287
CP029087.1\|AWE67277.1\|779957_780875_-\|putative-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
CP029087.1\|AWE67781.1\|766135_766846_+\|allophanate-hydrolase-subunit-1-family-protein	unknown	unknown	gnl\|CDD\|224960
CP029087.1\|AWE66001.1\|770523_772401_+\|heme-ABC-exporter,-ATP-binding-protein-CcmA	unknown	unknown	gnl\|CDD\|223562
CP029087.1\|AWE66599.1\|774415_775393_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224050
CP029087.1\|AWE67745.1\|772415_774194_+\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
CP029087.1\|AWE66356.1\|785177_785576_+\|nrdI-protein	unknown	unknown	gnl\|CDD\|224694
CP029087.1\|AWE67487.1\|787761_788733_+\|ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
CP029087.1\|AWE66659.1\|766829_767834_+\|allophanate-hydrolase-subunit-2-family-protein	unknown	unknown	gnl\|CDD\|224895
CP029087.1\|AWE66495.1\|791018_791780_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|226963
CP029087.1\|AWE68034.1\|789107_790079_+\|fecCD-transport-family-protein	unknown	unknown	gnl\|CDD\|226965

Protein	Function_ID	Function_description	E-value
CP029087.1\|AWE67174.1\|765167_765776_+\|aminotransferase-class-IV-family-protein	gnl\|CDD\|376449	pfam01063, Aminotran_4, Amino-transferase class IV. The D-amino acid transferases (D-AAT) are required by bacteria to catalyze the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity.	5.60043e-39
CP029087.1\|AWE66650.1\|777139_778198_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
CP029087.1\|AWE67183.1\|781144_782650_-\|H+-symporter-family-protein	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.22605e-172
CP029087.1\|AWE67821.1\|782990_783491_-\|7-cyano-7-deazaguanine-reductase	gnl\|CDD\|223851	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only].	7.91282e-79
CP029087.1\|AWE67154.1\|790065_791022_+\|fecCD-transport-family-protein	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	4.81847e-122
CP029087.1\|AWE66924.1\|783510_784377_-\|multidrug-resistance-efflux-transporter-family-protein	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.04233e-10
CP029087.1\|AWE66562.1\|775385_776900_+\|binding-protein-dependent-transport-system-inner-membrane-component-family-protein	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.03165e-152
CP029087.1\|AWE67030.1\|778536_779079_+\|putative-5'(3')-deoxyribonucleotidase	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	3.14113e-108
CP029087.1\|AWE65770.1\|785538_787644_+\|ribonucleoside-diphosphate-reductase,-alpha-subunit	gnl\|CDD\|236069	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
CP029087.1\|AWE65586.1\|768307_770248_+\|lipoteichoic-acid-synthase	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0
CP029087.1\|AWE67277.1\|779957_780875_-\|putative-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	7.55646e-79
CP029087.1\|AWE67781.1\|766135_766846_+\|allophanate-hydrolase-subunit-1-family-protein	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	1.34598e-94
CP029087.1\|AWE66001.1\|770523_772401_+\|heme-ABC-exporter,-ATP-binding-protein-CcmA	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
CP029087.1\|AWE66599.1\|774415_775393_+\|ABC-transporter-family-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	1.28246e-155
CP029087.1\|AWE67745.1\|772415_774194_+\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
CP029087.1\|AWE66356.1\|785177_785576_+\|nrdI-protein	gnl\|CDD\|224694	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism].	5.52807e-56
CP029087.1\|AWE67487.1\|787761_788733_+\|ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.30551e-164
CP029087.1\|AWE66659.1\|766829_767834_+\|allophanate-hydrolase-subunit-2-family-protein	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	1.25641e-144
CP029087.1\|AWE66495.1\|791018_791780_+\|ABC-transporter-family-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	1.22383e-150
CP029087.1\|AWE68034.1\|789107_790079_+\|fecCD-transport-family-protein	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.32603e-150

>CP029087.1|AWE67030.1|778536_779079_+|putative-5'(3')-deoxyribonucleotidase
MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
>CP029087.1|AWE66650.1|777139_778198_+|histidinol-phosphate-transaminase
MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSPKVKEAISAHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLEGILKEVNEDTSLVWLCNPNNPTGTYFNHESLDSFLSQVPPHVPVIIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRTFSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVAALEDQQYLKEVTHKNSVERERFYQLPQSEYFLPSQTNFIFVKTKRVNELYEALLNVGCITRPFPTGVRITIGFKEQNDKMLEVLSNFKYE
>CP029087.1|AWE66562.1|775385_776900_+|binding-protein-dependent-transport-system-inner-membrane-component-family-protein
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK
>CP029087.1|AWE66599.1|774415_775393_+|ABC-transporter-family-protein
MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLDMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQHLSESERVIVMQEDSVGQYVIDRKDIFKYLSQKKEVAQHD
>CP029087.1|AWE67745.1|772415_774194_+|ATP-dependent-DNA-helicase-RecQ
MQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEILMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV
>CP029087.1|AWE66001.1|770523_772401_+|heme-ABC-exporter,-ATP-binding-protein-CcmA
MEAYKIEHLNKSYADKTIFDNLDLSISEGEKIGLVGINGTGKSTLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQYEQAVQAYADDQSDKLFKRMIDAQDAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELNRGKLASYPGNYESYIEMRAEREVTLQKQQQKQRALYKEELAWMRAGAKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKVLFEHLTEIIQKGERIGVVGPNGAGKTTLLNILSGEDQQFEGKLKTGQTVKVAYFKQTDETLDRDIRMIDYLREESEVAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQSYWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQQSKSYTTVRKKNGLSYKEKLEYEQLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIKEQQ
>CP029087.1|AWE65586.1|768307_770248_+|lipoteichoic-acid-synthase
MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNVESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMAASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALASEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPKANSKK
>CP029087.1|AWE66659.1|766829_767834_+|allophanate-hydrolase-subunit-2-family-protein
MSIIIEKSGLFSSFQDFGRRGYEHDGVIPCGALDTLAHEIANRLVANDKNEATLEMTNKMATIRFTEPTLIALAGGNVKAYTEHMTISPYKLYLLDKGDVLKFRETSYTSRVYLAVGGGFELDAWLGSNSTDFNVKIGGFKGRTLQDGDEIKLKRDYTARHHKLFENLAHTKQTDWGIDGYALSFNYMSDVFHVVKNKGTEDFKEDAIQRFVKHDYKVTSKANRMGMMLEGEKIKAFYEDMPPYQTVKKGTIQIKRDGTPIILLNDHYTLGSYPQIGTIASYHLTKLAQKPQGSRLKFQFIDILTAEKNLVKYSNWLNQLFHGIEYRMQLEMMK
>CP029087.1|AWE67781.1|766135_766846_+|allophanate-hydrolase-subunit-1-family-protein
MKIYSQGDQAIVVAIEKEVSKSLTEDLLTLRSYLIEQNYPFIIEIVPSESDMMIVYDARDMIKHHNIQSPFLYMKALIESIHLNIKHDFNQQDLIEIPIVYGSKYGPDIESLLKHYKIKLETFIELHSKTQYFVSMMGYSPGFPYLTGLNKKLYINHTSKQKKFIPAGSVVLEGKKCGIVTTDTINDWLVIGYTPLSLFNPKESDFARLKLGDNIKFRPINENELEVGAFKDVNHN
>CP029087.1|AWE67174.1|765167_765776_+|aminotransferase-class-IV-family-protein
MQLFETMKIDNGHIPRLTYHTNRIKCSSERLNFKFDEHAWRNELNDVTTKYHSGQYRLKIVLNAESKFETIVSPLPEKSSFTAKFQVLPKVVNPTFIKNKTTERKHLAHNHETDLILLTSEDGKVLEFDIGNIVIEEDGKWYTPSYKDDFLKGCMRDYLIDSDKLVEKDFNKNELIYKYHNNEIRLFLINSLREVADVHLCL
>CP029087.1|AWE67277.1|779957_780875_-|putative-lipid-kinase
MENKYTHGVLFYHEHSGLKNINQGIGEVTTALSSICKHLSIQLSENEGDIIKYCQEIKTKNYAKDVDILFILGGDGTVNELINGVMSHDLQLPIGILPGGTFNDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYIGSTVKTLLNPTQFNYQLSIDDKTYSGETTMILTANGPFIGGSRIPLTDLSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPAMKVDIDGEISLETPIDIEVIPNAIQLLTVNDL
>CP029087.1|AWE67183.1|781144_782650_-|H+-symporter-family-protein
MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLGAVFIIIGHICLSLPFALIGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFVIFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMKPTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYFTLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGWKTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGIVGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNASAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAFSPLIIKAMKGIR
>CP029087.1|AWE67821.1|782990_783491_-|7-cyano-7-deazaguanine-reductase
MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDLYPEKIDNR
>CP029087.1|AWE66924.1|783510_784377_-|multidrug-resistance-efflux-transporter-family-protein
MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLFFLYKYHQPMFGRLSSQPLLITRSTLGLIGVLLNIYAIDHMVLSDADSLMKLNPFWTILLSIVFLHEKVRKYQITAMIIAILGMLLIVKPEFSSSMIPSLAGLFSGIFAASAYTCVRALSSREAPYTIVFYFSLFSVIVLIPFTAYTYEPMSQMQILYLLGAGLAAAVGQIGVTLAYSFAAAKDISIFTYASIIFTAILGFVLFGESPDFYATLGYVVIIGASYYMFEKARRDAKIIKK
>CP029087.1|AWE66356.1|785177_785576_+|nrdI-protein
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
>CP029087.1|AWE65770.1|785538_787644_+|ribonucleoside-diphosphate-reductase,-alpha-subunit
MKTMEEKKYNHIELNNEVTKRREDGFFSLEKDQEALVAYLEEVKDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSISFNFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAIVALYLANGNKAQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMVANPNVEKKKKNAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNKLLSVEECTSCSI
>CP029087.1|AWE67487.1|787761_788733_+|ribonucleoside-diphosphate-reductase-subunit-beta
MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVKGDGYVLALNVEALQDDDFVFDNK
>CP029087.1|AWE68034.1|789107_790079_+|fecCD-transport-family-protein
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVSPTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLRTNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVVTVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNYAQQ
>CP029087.1|AWE67154.1|790065_791022_+|fecCD-transport-family-protein
MRNNNKKIMLLIAVTLLISMLYLFVGIDFEIFEYQFSSRLRKFILIILVGAAIATSVVIFQAITNNRLLTPSIMGLDAVYLFIKVLPVFLFGIQSVWVTNVYLNFILTLITMVLFALILFQGIFKIGHFSIYFILLIGVLLGTFFRSITGFIQLIMDPESFLAIQSSMFANFNASNSNLVTFSAVLLVILLVITILLLPYLDVLLLGRAEAINLGISYEKLTRILLVIVSVLVSVSTALVGPITFLGLLTVNLAHELMKTYEHKYILIATICLSWISLFSAQWVVENVFEATTEMSILIDLIGGSYFIYLLVRRRNAQ
>CP029087.1|AWE66495.1|791018_791780_+|ABC-transporter-family-protein
MIQVENLTKTINNQMILEDISIDIEKGKLTSLIGPNGAGKSTLLSAICRLIRFDNGEVKIDGQLMSDYKNNDLSKKISILKQTNHTEMNITVEQLVNFGRFPYSKGRLTKEDHDIVNDALDLLQLQDIRNRNIKSLSGGQRQRAYIAMTIAQDTEYILLDEPLNNLDMKHAVQIMQTLKMLAHKMNKAIVIVLHDINFASCYSDQIVALKNGQLVKSDLKDNVIQSSVLSDLYDMNIQIEHIRNQRICLYFKD

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Crispr_ID: CP029087_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029087_3

820175-820253

Unclear

Consensus_repeat	Method
TGTAGAATTTCTTTTCGAAATTCT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of CP029087_3

>merge|CP029087|3|820175-820253|CRISPRCasFinder
TGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCGCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCT

>CP029087|3|3|820175-820253|CRISPRCasFinder
TGTAGAATTTCTTTTCGAAATTCT	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC
TGTAGAATTTCTTTTCGAAATTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP029087.1\|AWE67081.1\|829579_830167_+\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
CP029087.1\|AWE66098.1\|815008_816994_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
CP029087.1\|AWE66317.1\|826965_827961_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211689
CP029087.1\|AWE67414.1\|826057_826969_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224574
CP029087.1\|AWE67657.1\|828071_829016_+\|sporulation-Regulator-WhiA-C-terminal-domain-protein	unknown	unknown	gnl\|CDD\|273194
CP029087.1\|AWE67568.1\|811442_812435_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
CP029087.1\|AWE66607.1\|813856_814507_+\|HD-containing-hydrolase-like-enzyme-family-protein	unknown	unknown	gnl\|CDD\|378993
CP029087.1\|AWE68043.1\|808478_811010_+\|preprotein-translocase,-SecA-subunit	unknown	unknown	gnl\|CDD\|237259
CP029087.1\|AWE66009.1\|821449_822289_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
CP029087.1\|AWE66649.1\|822500_822782_+\|bacterial-transferase-hexapeptide-family-protein	unknown	unknown	gnl\|CDD\|100047
CP029087.1\|AWE66485.1\|814503_814740_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227234
CP029087.1\|AWE67149.1\|807492_808065_+\|ribosomal-subunit-interface-protein	unknown	unknown	gnl\|CDD\|224461
CP029087.1\|AWE67442.1\|822789_824229_+\|tetratricopeptide-repeat-family-protein	unknown	unknown	gnl\|CDD\|276808
CP029087.1\|AWE68147.1\|817001_819848_+\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
CP029087.1\|AWE67529.1\|806757_807432_+\|putative-amidophosphoribosyltransferase,-ComFC	unknown	unknown	gnl\|CDD\|223970
CP029087.1\|AWE67266.1\|805682_806765_+\|helicase-domain-protein	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|226583
CP029087.1\|AWE65930.1\|830409_831312_-\|NADH(P)-binding-family-protein	unknown	unknown	gnl\|CDD\|224015
CP029087.1\|AWE67895.1\|820511_821444_+\|HPr(Ser)-kinase/phosphatase	unknown	unknown	gnl\|CDD\|235459
CP029087.1\|AWE68174.1\|824295_825231_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
CP029087.1\|AWE65540.1\|812843_813683_+\|staphyloxanthin-biosynthesis-protein,-putative	unknown	unknown	gnl\|CDD\|226451

Protein	Function_ID	Function_description	E-value
CP029087.1\|AWE67081.1\|829579_830167_+\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP029087.1\|AWE66098.1\|815008_816994_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP029087.1\|AWE66317.1\|826965_827961_+\|hypothetical-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
CP029087.1\|AWE67414.1\|826057_826969_+\|hypothetical-protein	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
CP029087.1\|AWE67657.1\|828071_829016_+\|sporulation-Regulator-WhiA-C-terminal-domain-protein	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
CP029087.1\|AWE67568.1\|811442_812435_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
CP029087.1\|AWE66607.1\|813856_814507_+\|HD-containing-hydrolase-like-enzyme-family-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
CP029087.1\|AWE68043.1\|808478_811010_+\|preprotein-translocase,-SecA-subunit	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
CP029087.1\|AWE66009.1\|821449_822289_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	1.75588e-120
CP029087.1\|AWE66649.1\|822500_822782_+\|bacterial-transferase-hexapeptide-family-protein	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	5.13458e-26
CP029087.1\|AWE66485.1\|814503_814740_+\|hypothetical-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
CP029087.1\|AWE67149.1\|807492_808065_+\|ribosomal-subunit-interface-protein	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37
CP029087.1\|AWE67442.1\|822789_824229_+\|tetratricopeptide-repeat-family-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.14043e-06
CP029087.1\|AWE68147.1\|817001_819848_+\|excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP029087.1\|AWE67529.1\|806757_807432_+\|putative-amidophosphoribosyltransferase,-ComFC	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.0058e-51
CP029087.1\|AWE67266.1\|805682_806765_+\|helicase-domain-protein	gnl\|CDD\|226583	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].	1.70203e-180
CP029087.1\|AWE65930.1\|830409_831312_-\|NADH(P)-binding-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	6.73087e-155
CP029087.1\|AWE67895.1\|820511_821444_+\|HPr(Ser)-kinase/phosphatase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP029087.1\|AWE68174.1\|824295_825231_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
CP029087.1\|AWE65540.1\|812843_813683_+\|staphyloxanthin-biosynthesis-protein,-putative	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.97111e-42

>CP029087.1|AWE68147.1|817001_819848_+|excinuclease-ABC-subunit-A
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIDVPEYRRPASDRKISIRGARSNNLKGIDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>CP029087.1|AWE66098.1|815008_816994_+|excinuclease-ABC-subunit-B
MVEHYPFKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>CP029087.1|AWE66485.1|814503_814740_+|hypothetical-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>CP029087.1|AWE66607.1|813856_814507_+|HD-containing-hydrolase-like-enzyme-family-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>CP029087.1|AWE65540.1|812843_813683_+|staphyloxanthin-biosynthesis-protein,-putative
MKKTLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>CP029087.1|AWE67568.1|811442_812435_+|peptide-chain-release-factor-2
MAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>CP029087.1|AWE68043.1|808478_811010_+|preprotein-translocase,-SecA-subunit
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>CP029087.1|AWE67149.1|807492_808065_+|ribosomal-subunit-interface-protein
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ
>CP029087.1|AWE67529.1|806757_807432_+|putative-amidophosphoribosyltransferase,-ComFC
MNNCLSCGAKLYENITIYNLFKKPNRLCDRCKENWDNIKLDIKARRCSRCLKHLNQDEAYCLDCKFLSAHFNLMEQLYCQFQYDGLMKEMIHQYKFLKDYYLCELLAHLIEIPQTSYDYIVPIPSSPAHDLSRTFNPVEAVLKAKGIRFDKILKMSNRPKQSHLTKKERLADENPFIIDTELDLNGKEILLVDDIYTTGLTIHRAGCKLYAKNIRKFKVFAFAR
>CP029087.1|AWE67266.1|805682_806765_+|helicase-domain-protein
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVSPRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSKVEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETMIKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKLECPAGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE
>CP029087.1|AWE67895.1|820511_821444_+|HPr(Ser)-kinase/phosphatase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP029087.1|AWE66009.1|821449_822289_+|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>CP029087.1|AWE66649.1|822500_822782_+|bacterial-transferase-hexapeptide-family-protein
MLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP029087.1|AWE67442.1|822789_824229_+|tetratricopeptide-repeat-family-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP029087.1|AWE68174.1|824295_825231_+|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP029087.1|AWE67414.1|826057_826969_+|hypothetical-protein
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP029087.1|AWE66317.1|826965_827961_+|hypothetical-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP029087.1|AWE67657.1|828071_829016_+|sporulation-Regulator-WhiA-C-terminal-domain-protein
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP029087.1|AWE67081.1|829579_830167_+|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP029087.1|AWE65930.1|830409_831312_-|NADH(P)-binding-family-protein
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGMILSNEGGALQTMKLPYKYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE

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Crispr_ID: CP029087_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029087_4

868854-868934

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029087_4

>merge|CP029087|4|868854-868934|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGAGAATCCAATTTCTCTTTGTTGGGGCCATCCCCAACTTGCATTGCCTGTAGAA

>CP029087|4|4|868854-868934|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCAT
CCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP029087.1\|AWE66315.1\|867871_868750_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226395
CP029087.1\|AWE68207.1\|867756_867870_+\|hypothetical-protein	unknown	unknown	unknown
CP029087.1\|AWE67225.1\|873804_874656_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224946
CP029087.1\|AWE66487.1\|864845_865562_+\|3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|184156
CP029087.1\|AWE65810.1\|869924_870221_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
CP029087.1\|AWE66908.1\|866798_867155_+\|transcriptional-regulator,-Spx/MgsR-family-protein	unknown	unknown	gnl\|CDD\|239334
CP029087.1\|AWE66951.1\|875842_877150_+\|feS-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
CP029087.1\|AWE65826.1\|871530_872184_+\|methionine-import-system-permease-protein-MetP	unknown	unknown	gnl\|CDD\|224922
CP029087.1\|AWE66435.1\|867312_867693_+\|glycine-cleavage-system-H-protein	unknown	unknown	gnl\|CDD\|234918
CP029087.1\|AWE66528.1\|864275_864698_-\|peroxiredoxin,-Ohr-subfamily-protein	unknown	unknown	gnl\|CDD\|274649
CP029087.1\|AWE66431.1\|862610_863228_-\|lysE-type-translocator-family-protein	unknown	unknown	gnl\|CDD\|224198
CP029087.1\|AWE67098.1\|863382_863877_-\|acetyltransferase-domain-protein	unknown	unknown	gnl\|CDD\|372596
CP029087.1\|AWE65982.1\|874983_875745_+\|feS-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
CP029087.1\|AWE67889.1\|877264_878506_+\|putative-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
CP029087.1\|AWE65609.1\|873376_873571_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225777
CP029087.1\|AWE67310.1\|865644_866184_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380312
CP029087.1\|AWE67702.1\|866334_866655_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
CP029087.1\|AWE67324.1\|872201_873023_+\|NLPA-lipofamily-protein	unknown	unknown	gnl\|CDD\|224381
CP029087.1\|AWE65776.1\|870470_871496_+\|methionine-import-ATP-binding-protein-MetN-2	unknown	unknown	gnl\|CDD\|224058
CP029087.1\|AWE65963.1\|869545_869932_+\|toprim-domain-protein	unknown	unknown	gnl\|CDD\|224572

Protein	Function_ID	Function_description	E-value
CP029087.1\|AWE66315.1\|867871_868750_+\|hypothetical-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	3.13065e-77
CP029087.1\|AWE67702.1\|866334_866655_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.4922e-24
CP029087.1\|AWE67225.1\|873804_874656_-\|hypothetical-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	2.72117e-76
CP029087.1\|AWE66487.1\|864845_865562_+\|3-dehydroquinate-dehydratase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	3.2619e-146
CP029087.1\|AWE65810.1\|869924_870221_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
CP029087.1\|AWE66908.1\|866798_867155_+\|transcriptional-regulator,-Spx/MgsR-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
CP029087.1\|AWE66951.1\|875842_877150_+\|feS-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	3.36148e-135
CP029087.1\|AWE65826.1\|871530_872184_+\|methionine-import-system-permease-protein-MetP	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	8.5871e-98
CP029087.1\|AWE66528.1\|864275_864698_-\|peroxiredoxin,-Ohr-subfamily-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
CP029087.1\|AWE66431.1\|862610_863228_-\|lysE-type-translocator-family-protein	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	2.60719e-61
CP029087.1\|AWE67098.1\|863382_863877_-\|acetyltransferase-domain-protein	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	1.02873e-46
CP029087.1\|AWE65982.1\|874983_875745_+\|feS-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
CP029087.1\|AWE67889.1\|877264_878506_+\|putative-cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
CP029087.1\|AWE65609.1\|873376_873571_+\|hypothetical-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
CP029087.1\|AWE67310.1\|865644_866184_+\|nitroreductase-family-protein	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
CP029087.1\|AWE66435.1\|867312_867693_+\|glycine-cleavage-system-H-protein	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	9.01516e-70
CP029087.1\|AWE67324.1\|872201_873023_+\|NLPA-lipofamily-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.02861e-112
CP029087.1\|AWE65776.1\|870470_871496_+\|methionine-import-ATP-binding-protein-MetN-2	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	2.03316e-170
CP029087.1\|AWE65963.1\|869545_869932_+\|toprim-domain-protein	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.45102e-36

>CP029087.1|AWE66315.1|867871_868750_+|hypothetical-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLSQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLNDLPEQQELFPVNEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQVHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>CP029087.1|AWE68207.1|867756_867870_+|hypothetical-protein
MKENLLGTIIWSIATFYYSRMMKIMNLAILKIKIGGS
>CP029087.1|AWE66435.1|867312_867693_+|glycine-cleavage-system-H-protein
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE
>CP029087.1|AWE66908.1|866798_867155_+|transcriptional-regulator,-Spx/MgsR-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>CP029087.1|AWE67702.1|866334_866655_-|thioredoxin-family-protein
MQAIKSNESFKSIINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>CP029087.1|AWE67310.1|865644_866184_+|nitroreductase-family-protein
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>CP029087.1|AWE66487.1|864845_865562_+|3-dehydroquinate-dehydratase
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFINDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIIKHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>CP029087.1|AWE66528.1|864275_864698_-|peroxiredoxin,-Ohr-subfamily-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>CP029087.1|AWE67098.1|863382_863877_-|acetyltransferase-domain-protein
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNAYFDEHWLFYDLINK
>CP029087.1|AWE66431.1|862610_863228_-|lysE-type-translocator-family-protein
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGEAQIISPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF
>CP029087.1|AWE65963.1|869545_869932_+|toprim-domain-protein
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>CP029087.1|AWE65810.1|869924_870221_+|thioredoxin-family-protein
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>CP029087.1|AWE65776.1|870470_871496_+|methionine-import-ATP-binding-protein-MetN-2
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEHGPVTQVFENPQHTVTKRFVKEDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>CP029087.1|AWE65826.1|871530_872184_+|methionine-import-system-permease-protein-MetP
MPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWIVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>CP029087.1|AWE67324.1|872201_873023_+|NLPA-lipofamily-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYDLDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>CP029087.1|AWE65609.1|873376_873571_+|hypothetical-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>CP029087.1|AWE67225.1|873804_874656_-|hypothetical-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGILLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTGLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFTGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>CP029087.1|AWE65982.1|874983_875745_+|feS-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>CP029087.1|AWE66951.1|875842_877150_+|feS-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKHFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDKNASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>CP029087.1|AWE67889.1|877264_878506_+|putative-cysteine-desulfurase
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPMQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDIDQLINALKQTKEFFSYEF

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Crispr_ID: CP029087_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029087_5

1175508-1175594

Orphan

Consensus_repeat	Method
ACAATGCAAGTTGGGGTGGGGCCACAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029087_5

>merge|CP029087|5|1175508-1175594|CRISPRCasFinder
ACAATGCAAGTTGGGGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGGGTGGGGCCCAACAC

>CP029087|5|5|1175508-1175594|CRISPRCasFinder
ACAATGCAAGTTGGGGTGGGGCCACAACA	GAGAGAAATAGGATCACCAATTCCAACAG
ACAATGCAAGTTGGGGTGGGGCCCAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP029087.1\|AWE65944.1\|1180527_1180674_+\|putative-membrane-protein	unknown	unknown	unknown
CP029087.1\|AWE66044.1\|1170044_1170632_+\|non-canonical-purine-NTP-pyrophosphatase,-RdgB/HAM1-family	unknown	unknown	gnl\|CDD\|184835
CP029087.1\|AWE67820.1\|1184151_1185153_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235269
CP029087.1\|AWE68270.1\|1169232_1170033_+\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
CP029087.1\|AWE67502.1\|1170624_1171128_+\|phosphodiesterase,-MJ0936-family-protein	unknown	unknown	gnl\|CDD\|223695
CP029087.1\|AWE67127.1\|1180657_1180855_+\|hypothetical-protein	unknown	unknown	unknown
CP029087.1\|AWE67015.1\|1171616_1171946_+\|fibrinogen-binding-protein	unknown	unknown	gnl\|CDD\|289007
CP029087.1\|AWE66678.1\|1182988_1183714_-\|toxin-beta-grasp-domain-protein	unknown	unknown	gnl\|CDD\|171855
CP029087.1\|AWE68017.1\|1175858_1176044_-\|putative-membrane-protein	unknown	unknown	unknown
CP029087.1\|AWE68179.1\|1172314_1172716_-\|FPRL1-inhibitory-protein	unknown	unknown	gnl\|CDD\|171849
CP029087.1\|AWE65783.1\|1177417_1178737_+\|helix-turn-helix-domain-of-transposase-ISL3-family-protein	unknown	unknown	gnl\|CDD\|225995
CP029087.1\|AWE67034.1\|1171282_1171423_+\|hypothetical-protein	unknown	unknown	unknown
CP029087.1\|AWE67571.1\|1174798_1175149_+\|complement-inhibitor	unknown	unknown	gnl\|CDD\|371594
CP029087.1\|AWE65815.1\|1178895_1179855_-\|alpha-hemolysin	unknown	unknown	gnl\|CDD\|273388
CP029087.1\|AWE68227.1\|1174151_1174649_+\|fibrinogen-binding-protein	unknown	unknown	gnl\|CDD\|289007
CP029087.1\|AWE65625.1\|1182168_1182894_-\|toxin-beta-grasp-domain-protein	unknown	unknown	gnl\|CDD\|106307
CP029087.1\|AWE68005.1\|1173385_1173892_+\|putative-membrane-protein	unknown	unknown	unknown
CP029087.1\|AWE66867.1\|1172107_1172224_+\|putative-membrane-protein	unknown	unknown	unknown
CP029087.1\|AWE67669.1\|1176665_1176899_-\|hypothetical-protein	unknown	unknown	unknown
CP029087.1\|AWE66509.1\|1181344_1182061_-\|toxin-beta-grasp-domain-protein	unknown	unknown	gnl\|CDD\|171995

Protein	Function_ID	Function_description	E-value
CP029087.1\|AWE66678.1\|1182988_1183714_-\|toxin-beta-grasp-domain-protein	gnl\|CDD\|171855	PRK13043, PRK13043, superantigen-like protein; Reviewed.	1.6289e-161
CP029087.1\|AWE66044.1\|1170044_1170632_+\|non-canonical-purine-NTP-pyrophosphatase,-RdgB/HAM1-family	gnl\|CDD\|184835	PRK14822, PRK14822, XTP/dITP diphosphatase.	6.07313e-114
CP029087.1\|AWE67015.1\|1171616_1171946_+\|fibrinogen-binding-protein	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	2.22818e-21
CP029087.1\|AWE68270.1\|1169232_1170033_+\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	2.38427e-134
CP029087.1\|AWE65783.1\|1177417_1178737_+\|helix-turn-helix-domain-of-transposase-ISL3-family-protein	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.75686e-114
CP029087.1\|AWE67820.1\|1184151_1185153_+\|ornithine-carbamoyltransferase	gnl\|CDD\|235269	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.	0
CP029087.1\|AWE67502.1\|1170624_1171128_+\|phosphodiesterase,-MJ0936-family-protein	gnl\|CDD\|223695	COG0622, COG0622, Predicted phosphoesterase [General function prediction only].	9.91823e-44
CP029087.1\|AWE68179.1\|1172314_1172716_-\|FPRL1-inhibitory-protein	gnl\|CDD\|171849	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed.	4.48566e-77
CP029087.1\|AWE66509.1\|1181344_1182061_-\|toxin-beta-grasp-domain-protein	gnl\|CDD\|171995	PRK13350, PRK13350, superantigen-like protein; Reviewed.	2.65762e-152
CP029087.1\|AWE67571.1\|1174798_1175149_+\|complement-inhibitor	gnl\|CDD\|371594	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN. SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface. An 18 residue stretch 31-48 is crucial for SCIN activity.	2.0882e-48
CP029087.1\|AWE65815.1\|1178895_1179855_-\|alpha-hemolysin	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	1.66722e-141
CP029087.1\|AWE68227.1\|1174151_1174649_+\|fibrinogen-binding-protein	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	2.84801e-27
CP029087.1\|AWE65625.1\|1182168_1182894_-\|toxin-beta-grasp-domain-protein	gnl\|CDD\|106307	PRK13349, PRK13349, superantigen-like protein; Reviewed.	3.51282e-147

>CP029087.1|AWE67571.1|1174798_1175149_+|complement-inhibitor
MKFKKYILTGTLALLLSSTGIATIEGNKADASSLDKYLTESQFHDKRIAEELRTLLNKSNVYALAAGSLNPYYKRTIMMNEYRAKAALKKNDFVSMADAKVALEKIYKEIDEIINR
>CP029087.1|AWE68227.1|1174151_1174649_+|fibrinogen-binding-protein
MKNKLIAKSLLTIAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVR
>CP029087.1|AWE68005.1|1173385_1173892_+|putative-membrane-protein
MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFITIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAVNEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
>CP029087.1|AWE68179.1|1172314_1172716_-|FPRL1-inhibitory-protein
MKKNITKTIIASTVIAAGLLTQTNDAKAFFSYEWKGLEIAKNLADQAKKDDERIDKLMKESDKNLTPYKAETVNDLYLIVKKLSQGDVKKAVVRIKDGGPRDYYTFDLTRPLEENRKNIKVVKNGEIDSIYWD
>CP029087.1|AWE66867.1|1172107_1172224_+|putative-membrane-protein
MAIVKRKSNVLTIIKIVTDIVATVLIIRALLNSRKDAK
>CP029087.1|AWE67015.1|1171616_1171946_+|fibrinogen-binding-protein
MKKNFIGKSILSIAAISLTVSTFAGESHAQTKNVEAAKKYDQYQTNFKKQVNKKVVDAQKAVNLFKRTRTVATHRKAQRAVNLIHFQHSYEKKKLQRQIDLVLKYNTLK
>CP029087.1|AWE67034.1|1171282_1171423_+|hypothetical-protein
MIVDNPIWLNHVDYLVKSVLLKSIKLRFQEVRKFEILVKIMNRIHI
>CP029087.1|AWE67502.1|1170624_1171128_+|phosphodiesterase,-MJ0936-family-protein
MSKWIIVSDNHTESGVLYQIYEMHPDADVYLHLGDSEFAYDDTELSLFNRVKGNCDFYPEFENEAVAKYNDVKAFYTHGHLYQVNRTRDLLAEKGLELGCLFAFYGHTHVAKYEYINGVHVINPGSISQSRSSMEETYAEVIIDDQTLHGTINFKNRHHETISHTTF
>CP029087.1|AWE66044.1|1170044_1170632_+|non-canonical-purine-NTP-pyrophosphatase,-RdgB/HAM1-family
MKEIVIASNNQGKINDFKVIFPDYHVIGISELIPDFDVEETGSTFEENAILKSEAAAKALNKTVIADDSGLEVFALNGEPGIYSARYAGENKSDEANIEKLLNKLGNTTDRRAQFVCVISMSGPDMETKVFKGTVSGEIADGKYGENGFGYDPIFYVPKLDKTMAQLSKEQKGQISHRRNAINLLQAFLEGEKNV
>CP029087.1|AWE68270.1|1169232_1170033_+|glutamate-racemase
MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSNEHASYTEHPDHRFFATGDPTHITNIIKEWLNLSVNVERISVND
>CP029087.1|AWE68017.1|1175858_1176044_-|putative-membrane-protein
MNKHINKKATKLLEDYKKVQQRKSEETDRGCLKSVIMLIVLFFLIIFGIVACSTNVNFFFQ
>CP029087.1|AWE67669.1|1176665_1176899_-|hypothetical-protein
MVFNDWEINVVYSGEHEVVTNEKSLFVIDEFYDVAIAIYYLDGKLKVAHVNYGSDFTIDVANKVFELNIQNPNVDEH
>CP029087.1|AWE65783.1|1177417_1178737_+|helix-turn-helix-domain-of-transposase-ISL3-family-protein
MCNDTLELLRIKDENIKYINQEIDVIIKGKKATVVNAVLTYKPSACYCCGVKNEGQIHKHGKRVSRITLLKTQGYNTYLNLAKQRFKCLECNGTFTAKTSIVDESCFISRCVTQKVIEEATKVKTEIDTAEDNCISPSTVSRIRTKAANSLRIKPFNCLPEHIAMDEFKSVKNVTGSMSFIFIDNDTHDVIDILENRTTRFLRAYFERFDLKNRQQVKTVTIDMYEPYVRLFRDLFPNAAIIFDRFHIVQHLNRELNKYRVQVMNEYRNKKGPNYTIFKNNWKVLLMDTSKTIFSKYRWNKSFKAYKRSSDIVEFMLSKDDILRRSYELVQGLRKDLRLCNWPKFINRLNSVSKKSVSKGVWKVVKYYRKHQRMLRNTIYYPAFNNGAIEGINNKIKLIKRISFGYRNFNNFKARIMMIFSLYKGEKKKTTKPNNGLAA
>CP029087.1|AWE65815.1|1178895_1179855_-|alpha-hemolysin
MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWTDRSSERYKIDWEKEEMTN
>CP029087.1|AWE65944.1|1180527_1180674_+|putative-membrane-protein
MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE
>CP029087.1|AWE67127.1|1180657_1180855_+|hypothetical-protein
MTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYVSLKEH
>CP029087.1|AWE66509.1|1181344_1182061_-|toxin-beta-grasp-domain-protein
MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHFSFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQLWWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAREALIKNKILYTENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD
>CP029087.1|AWE65625.1|1182168_1182894_-|toxin-beta-grasp-domain-protein
MNNNITKKIILSTTLLLLGTAFTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYLTFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDSFALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIRQTLIKSKKLYNNSYNKGQIKITGTDNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKSN
>CP029087.1|AWE66678.1|1182988_1183714_-|toxin-beta-grasp-domain-protein
MKKNIMNKLVLSTALLLLGTTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHFSLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPKNAQIEVILEKSN
>CP029087.1|AWE67820.1|1184151_1185153_+|ornithine-carbamoyltransferase
MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAENSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF

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Crispr_ID: CP029087_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029087_6

1747118-1747202

Orphan

Consensus_repeat	Method
CACCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029087_6

>merge|CP029087|6|1747118-1747202|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGCCTGTAGAA

>CP029087|6|6|1747118-1747202|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA
CACCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP029087.1\|AWE66426.1\|1749839_1750814_-\|DNA-polymerase-III,-delta-subunit	unknown	unknown	gnl\|CDD\|235511
CP029087.1\|AWE67843.1\|1739076_1739829_-\|ribosomal-RNA-small-subunit-methyltransferase-E	unknown	unknown	gnl\|CDD\|224303
CP029087.1\|AWE68001.1\|1755074_1755428_-\|ribosomal-silencing-factor-RsfS	unknown	unknown	gnl\|CDD\|223870
CP029087.1\|AWE66295.1\|1755428_1756013_-\|HD-domain-protein	unknown	unknown	gnl\|CDD\|224627
CP029087.1\|AWE66953.1\|1740772_1741912_-\|chaperone-protein-DnaJ	unknown	unknown	gnl\|CDD\|237656
CP029087.1\|AWE66926.1\|1753076_1753538_-\|comE-operon-protein-2	unknown	unknown	gnl\|CDD\|131622
CP029087.1\|AWE66384.1\|1736327_1737035_-\|putative-membrane-bound-serine-protease	unknown	unknown	gnl\|CDD\|223961
CP029087.1\|AWE67577.1\|1743948_1744575_-\|protein-GrpE	unknown	unknown	gnl\|CDD\|237622
CP029087.1\|AWE67717.1\|1744606_1745584_-\|heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|273017
CP029087.1\|AWE66603.1\|1742047_1743880_-\|chaperone-protein-DnaK	unknown	unknown	gnl\|CDD\|234715
CP029087.1\|AWE66644.1\|1753629_1754307_-\|competence-ComEA-helix-hairpin-helix-repeat-region-domain-protein	unknown	unknown	gnl\|CDD\|224472
CP029087.1\|AWE68164.1\|1750870_1753051_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|225212
CP029087.1\|AWE67965.1\|1737723_1739070_-\|threonylcarbamoyladenosine-tRNA-methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
CP029087.1\|AWE66852.1\|1754355_1755072_-\|methyltransferase-type-12	unknown	unknown	gnl\|CDD\|379312
CP029087.1\|AWE66693.1\|1745684_1746650_-\|hemN-C-terminal-domain-protein	unknown	unknown	gnl\|CDD\|236309
CP029087.1\|AWE67334.1\|1747374_1749198_-\|GTP-binding-protein-LepA	unknown	unknown	gnl\|CDD\|235462
CP029087.1\|AWE67695.1\|1756002_1756572_-\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|273101
CP029087.1\|AWE66441.1\|1749543_1749795_+\|ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
CP029087.1\|AWE67080.1\|1737254_1737431_-\|ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
CP029087.1\|AWE67276.1\|1739830_1740769_-\|ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886

Protein	Function_ID	Function_description	E-value
CP029087.1\|AWE66426.1\|1749839_1750814_-\|DNA-polymerase-III,-delta-subunit	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	4.1415e-104
CP029087.1\|AWE67843.1\|1739076_1739829_-\|ribosomal-RNA-small-subunit-methyltransferase-E	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	1.90273e-91
CP029087.1\|AWE68001.1\|1755074_1755428_-\|ribosomal-silencing-factor-RsfS	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	5.95861e-47
CP029087.1\|AWE66295.1\|1755428_1756013_-\|HD-domain-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	2.21948e-80
CP029087.1\|AWE66953.1\|1740772_1741912_-\|chaperone-protein-DnaJ	gnl\|CDD\|237656	PRK14280, PRK14280, molecular chaperone DnaJ.	0
CP029087.1\|AWE66926.1\|1753076_1753538_-\|comE-operon-protein-2	gnl\|CDD\|131622	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.	4.81051e-102
CP029087.1\|AWE66384.1\|1736327_1737035_-\|putative-membrane-bound-serine-protease	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	5.49862e-65
CP029087.1\|AWE67577.1\|1743948_1744575_-\|protein-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	3.74407e-81
CP029087.1\|AWE67717.1\|1744606_1745584_-\|heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	2.05887e-119
CP029087.1\|AWE66603.1\|1742047_1743880_-\|chaperone-protein-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
CP029087.1\|AWE66644.1\|1753629_1754307_-\|competence-ComEA-helix-hairpin-helix-repeat-region-domain-protein	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	8.07958e-34
CP029087.1\|AWE68164.1\|1750870_1753051_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	3.61928e-90
CP029087.1\|AWE67965.1\|1737723_1739070_-\|threonylcarbamoyladenosine-tRNA-methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0
CP029087.1\|AWE66852.1\|1754355_1755072_-\|methyltransferase-type-12	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	7.79783e-16
CP029087.1\|AWE66693.1\|1745684_1746650_-\|hemN-C-terminal-domain-protein	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
CP029087.1\|AWE67334.1\|1747374_1749198_-\|GTP-binding-protein-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
CP029087.1\|AWE67695.1\|1756002_1756572_-\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|273101	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	2.64141e-76
CP029087.1\|AWE66441.1\|1749543_1749795_+\|ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.42889e-17
CP029087.1\|AWE67080.1\|1737254_1737431_-\|ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.15423e-10
CP029087.1\|AWE67276.1\|1739830_1740769_-\|ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	9.7051e-134

>CP029087.1|AWE66693.1|1745684_1746650_-|hemN-C-terminal-domain-protein
MYVGGGTPTALSINQLERLLKAIRDTFTITGEYTFEANPDELTKEKVQLLEKYGVNRISMGVQTFKPELLSVLGRTHNTEDIYTSVLNAKNAGIKSISLDLMYHLPKQTIEDFEQSLDLALDMDIQHISSYGLILEPKTQFYNMYRKGLLKLPNEDLGADMYQLLMSKIEQSPFHQYEISNFALDGHESEHNKVYWFNEEYYGFGAGASGYVDGVRYTNINPVNHYIKAINKESKAILVSNKPSLTERMEEEMFLGLRLNEGVSSSRFKKKFDQSIESVFGQTINNLKEKELIVEKNDAIALTKRGKVIGNEVFEAFLIND
>CP029087.1|AWE67717.1|1744606_1745584_-|heat-inducible-transcription-repressor-HrcA
MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQYTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFSNDKLNTISNFVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLINTMNNHISNQSNSIYMGGKVKLIDALNESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETLKGQIAVIGPTAMHYQNVIQLLNRIW
>CP029087.1|AWE67577.1|1743948_1744575_-|protein-GrpE
MTNKDESVEKNTESTVEETNIKQNIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERALQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVNQ
>CP029087.1|AWE66603.1|1742047_1743880_-|chaperone-protein-DnaK
MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKNGETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAESYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDKDEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDKNGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNEADSLVFQVEKTLTDLGENIGEEDKKSAEEKKDALKTALEGQDIEDIKSKKEELEKVIQELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK
>CP029087.1|AWE66953.1|1740772_1741912_-|chaperone-protein-DnaJ
MAKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENKTVKLEVKVPEGVDNEQQIRLAGEGSPGVNGGPAGDLYVVFRVKPSETFKRDGDDIYYKLNVSFPQAALGDEIKIPTLNNEVMLTIPAGTQTGKQFRLKEKGIKNVHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQLNGEEINEQPSNFKDRAKRFFKGE
>CP029087.1|AWE67276.1|1739830_1740769_-|ribosomal-protein-L11-methyltransferase
MNWTELSIIINHEAVELATNILENHGSNGVVIEDSDDLINQPEDKYGEIYALKKEDYPDKGVRLKAYFNEMTYDDKLRQQIKDELLNLDELDQHNIQFSEQIIAETDWENEWKNYFHPFRASKKFTIVPSWETYAKEADEELCIELDPGMAFGTGDHPTTSMCLKAIETYVLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPGNLLKDETEKFDIVIANILAHIIDEMIEDAYNTLNEGGYFITSGIIKEKYEGIQSHMERVGFKIISEQHDNGWVCLVGQKVSE
>CP029087.1|AWE67843.1|1739076_1739829_-|ribosomal-RNA-small-subunit-methyltransferase-E
MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVVKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALSAISYEKELMG
>CP029087.1|AWE67965.1|1737723_1739070_-|threonylcarbamoyladenosine-tRNA-methylthiotransferase-MtaB
MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKVKITQANYPLNEGQAIKVVDFATNKSDREVLV
>CP029087.1|AWE67080.1|1737254_1737431_-|ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
>CP029087.1|AWE66384.1|1736327_1737035_-|putative-membrane-bound-serine-protease
MSYNNFLQMTTILESTAGDTWVEQVSNIIVQPIFTLILTCLTFLGFVYQLYSKKINAAGIIATLSLLILFLGFLIQGNVNMHSILIFSIGVILVVIELFVVGAVIGIIGMILITISITTLGDNLLFMLANVIVALILTIVEWVILVKIFNRKIPFLDKVILKDSTNSESGYNSHDNRSHLVGKTAQTVTDLRPAGIIFCENERIDAVSDGNFILRNKTVKILEVEGTRVVVREVD
>CP029087.1|AWE67334.1|1747374_1749198_-|GTP-binding-protein-LepA
MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRDMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNELELLPVINKIDLPAAEPERVKQEIEDMIGLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISSIRIVDGVVKAGDKIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDDSRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCILRDGSEVTVDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE
>CP029087.1|AWE66441.1|1749543_1749795_+|ribosomal-protein-S20
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
>CP029087.1|AWE66426.1|1749839_1750814_-|DNA-polymerase-III,-delta-subunit
MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIVDACAETDYKLKSSYMDKQLILELFILSL
>CP029087.1|AWE68164.1|1750870_1753051_-|DNA-internalization-related-competence-protein-ComEC/Rec2
MIVGVLWNSSKVLSTFLFILLLYITYRKNKIVYAPISLFLIIFSSWYLHYSQQAIFNYINYIERNSQFNERAQVIQIQRQGSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNENKFVTLKLQSIVVQSCLESNRSNLIEKHKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGITIIVLTLYAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQQLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFHDWLLDLFTRIKQSHFSVPKFNDWIFIIFIISVYYIFWLLAKRKYILVTFWTIIILTLLITFPTNSHHKITMLNVGQGDSILYEGGKNQNVLIDTGGKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKGYSSNTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLLKKYNLPEIDILKVGHHGSKTSSSKEFIEMIKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVDSNSYGNASGL
>CP029087.1|AWE66926.1|1753076_1753538_-|comE-operon-protein-2
MERIKWEEYFMAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
>CP029087.1|AWE66644.1|1753629_1754307_-|competence-ComEA-helix-hairpin-helix-repeat-region-domain-protein
MYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI
>CP029087.1|AWE66852.1|1754355_1755072_-|methyltransferase-type-12
MSQYAEMSLVYDQLTQDQPYEKWFEIVKNHCKDESNILDIGCGTGSLTVQLEALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDTERLFFIAKK
>CP029087.1|AWE68001.1|1755074_1755428_-|ribosomal-silencing-factor-RsfS
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
>CP029087.1|AWE66295.1|1755428_1756013_-|HD-domain-protein
MNIEKAKRLAKEKLPEKRYNHSLRVAETAIKLAEIYDGDTSKVELAGVLHDFCKYDDLGKMYQIVRQYELGNDLLSYGSEILHGPVCAAIMEHEYGINDEEVLMAIKYHTTGRQQMTKTEKLIFIADYIEPGRTIPGVDDIRDMAYNQGSLDKTIYEISKRTVLFLIQKDITVYNKTIDCLNYYNYSDERIKDD
>CP029087.1|AWE67695.1|1756002_1756572_-|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHNNFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH

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Crispr_ID: CP029087_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029087_7

1780071-1780218

Orphan

Consensus_repeat	Method
CTATGTTGGGGCCCCGTCCCCAACTTCCATTGCCTGT	PILER-CR

2 spacers

The CRISPR arrays of CP029087_7

>merge|CP029087|7|1780071-1780218|PILER-CR
GGGGCCCCGTCCCCAACTTCCATTGCCTGTTGAAATTAGGGTTCCAATTTCTCTGTGTTGGGGCCCCGCCAACTTCCATTGCCTGTTGAAATTGGGGTTCCAATTTCTCTATGTTGGGGCCCCGTCCCCAACTTCCATTGCCTGTAGA

>CP029087|7|1|1780071-1780218|PILER-CR
GGGGCCCCGTCCCCAACTTCCATTGCCTGTTGAAATTAGGG	TTCCAATTTCTCTGTGTTGGGGCCC
CGCCAACTTCCATTGCCTGTTGAAATTGGGGTTCCAATTTC	TCTATGTTGGGGCCCCGTCCCC
AACTTCCATTGCCTGTAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP029087.1\|AWE66094.1\|1784676_1785099_-\|HTH-type-transcriptional-regulator-CymR	unknown	unknown	gnl\|CDD\|224870
CP029087.1\|AWE67016.1\|1786618_1787392_-\|thiF-family-protein	unknown	unknown	gnl\|CDD\|224100
CP029087.1\|AWE68235.1\|1787852_1789619_-\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
CP029087.1\|AWE67462.1\|1780385_1781504_-\|tRNA-(5-methylaminomethyl-2-thiouridylate)-methyltransferase	unknown	unknown	gnl\|CDD\|234664
CP029087.1\|AWE67200.1\|1779022_1779691_-\|tetratricopeptide-repeat-family-protein	unknown	unknown	gnl\|CDD\|276809
CP029087.1\|AWE65569.1\|1770643_1771567_-\|peptidase-U32-family-protein	unknown	unknown	gnl\|CDD\|223896
CP029087.1\|AWE65738.1\|1771569_1772208_-\|methyltransferase-domain-protein	unknown	unknown	gnl\|CDD\|226607
CP029087.1\|AWE65719.1\|1784394_1784577_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225777
CP029087.1\|AWE65733.1\|1773570_1776201_-\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
CP029087.1\|AWE67811.1\|1772492_1772801_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184235
CP029087.1\|AWE65894.1\|1769363_1770632_-\|putative-protease	unknown	unknown	gnl\|CDD\|223896
CP029087.1\|AWE66442.1\|1776543_1779021_-\|ATPase,-AAA-family-protein	unknown	unknown	gnl\|CDD\|273632
CP029087.1\|AWE67514.1\|1784208_1784355_-\|hypothetical-protein	unknown	unknown	unknown
CP029087.1\|AWE66228.1\|1781504_1782647_-\|aminotransferase-class-V-family-protein	unknown	unknown	gnl\|CDD\|224029
CP029087.1\|AWE67646.1\|1773337_1773508_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180108
CP029087.1\|AWE65709.1\|1772815_1773244_-\|putative-Holliday-junction-resolvase	unknown	unknown	gnl\|CDD\|223886
CP029087.1\|AWE67997.1\|1789634_1790897_-\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
CP029087.1\|AWE67491.1\|1768740_1769364_-\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492
CP029087.1\|AWE66196.1\|1782958_1783972_+\|luciferase-oxidoreductase,-group-1-family-protein	unknown	unknown	gnl\|CDD\|274646
CP029087.1\|AWE66134.1\|1785183_1786458_+\|sigma-54-interaction-domain-protein	unknown	unknown	gnl\|CDD\|237355

Protein	Function_ID	Function_description	E-value
CP029087.1\|AWE66094.1\|1784676_1785099_-\|HTH-type-transcriptional-regulator-CymR	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	5.58388e-46
CP029087.1\|AWE67016.1\|1786618_1787392_-\|thiF-family-protein	gnl\|CDD\|224100	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism].	1.59061e-126
CP029087.1\|AWE68235.1\|1787852_1789619_-\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
CP029087.1\|AWE67462.1\|1780385_1781504_-\|tRNA-(5-methylaminomethyl-2-thiouridylate)-methyltransferase	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
CP029087.1\|AWE67200.1\|1779022_1779691_-\|tetratricopeptide-repeat-family-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	4.6095e-16
CP029087.1\|AWE65569.1\|1770643_1771567_-\|peptidase-U32-family-protein	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	7.60817e-104
CP029087.1\|AWE65738.1\|1771569_1772208_-\|methyltransferase-domain-protein	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	5.53366e-74
CP029087.1\|AWE65719.1\|1784394_1784577_-\|hypothetical-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	4.22501e-07
CP029087.1\|AWE65733.1\|1773570_1776201_-\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
CP029087.1\|AWE67811.1\|1772492_1772801_-\|hypothetical-protein	gnl\|CDD\|184235	PRK13678, PRK13678, hypothetical protein; Provisional.	1.28539e-26
CP029087.1\|AWE65894.1\|1769363_1770632_-\|putative-protease	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	5.98972e-149
CP029087.1\|AWE66442.1\|1776543_1779021_-\|ATPase,-AAA-family-protein	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	0
CP029087.1\|AWE66228.1\|1781504_1782647_-\|aminotransferase-class-V-family-protein	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	0
CP029087.1\|AWE67646.1\|1773337_1773508_-\|hypothetical-protein	gnl\|CDD\|180108	PRK05473, IreB-like, IreB family regulatory phosphoprotein. IreB (EF1202) was characterized in Enterococcus faecalis as a small protein, well-conserved in the Firmicutes. It belongs to a system that includes the Ser/Thr protein kinase IreK, and phosphatase IreP, undergoes phosphorylation on threonine residues, and is involved in regulating cephalosporin resistance. This family was previously named DUF965 by Pfam model pfam06135.	1.32387e-30
CP029087.1\|AWE65709.1\|1772815_1773244_-\|putative-Holliday-junction-resolvase	gnl\|CDD\|223886	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair].	3.40149e-56
CP029087.1\|AWE67997.1\|1789634_1790897_-\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	0
CP029087.1\|AWE67491.1\|1768740_1769364_-\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	5.13835e-138
CP029087.1\|AWE66196.1\|1782958_1783972_+\|luciferase-oxidoreductase,-group-1-family-protein	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	1.35642e-173
CP029087.1\|AWE66134.1\|1785183_1786458_+\|sigma-54-interaction-domain-protein	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0

>CP029087.1|AWE67200.1|1779022_1779691_-|tetratricopeptide-repeat-family-protein
MIDQQTIYQYIQNGKIEEALQALFGNIEEDPTIIENYINAGIVLADANEIEKAERFFQKALTIDPKNGVVFYNLANVYYNQQRYQEAIKLYQQALQTEIEQVDCNYMIGMAFNQLESFKLALPYLMTAAELDKDKDAEVQFQYGLVLCQLEMFNEAITQLKHVLTIDKNHVDARYNLGLALFMKNEDIDEAITHFKEAVTIDPKHLLSQHALKTFTKMKEEE
>CP029087.1|AWE66442.1|1776543_1779021_-|ATPase,-AAA-family-protein
MSDPTLFDYSMIKGTVEAILFQNSDNFYTVLKVDTIETNEDFDTMPTVVGFLPNIVEGDVYTFKGQVVDHPRYGKQLKAETFEKEMPQTKEAIISYLSSDLFKGVGKKTAQNIVNTLGDNAINDILDDHSVLEKVSGLSKKKQKQIAEQISANQESEKIMIRLHDLGFGPKLSMAIYQFYLGDTLTILDRNPYQLIYDIKGIGFNKADQLARNIGIAYNDNERLKAALLYTLEEECIKQGHTYLPINVVIDLTVDVLNYQDEEVIEPEKLDEMLQYLNEEKRLIIDNEQVAIPSLYYSEIKSVQNLFRIKTHTNKLTEIEQSDLQMHIGEIEDANQVNYAASQKEALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYVNDDYPVVLAAPTGRASKRLQESTGLEAMTIHRLIGWNQDTKPEDILENEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQLIFVGDEDQLPSVGPGQVFKDLIESKAIPRVNLTEVYRQQDGSSIIELAHRMKLGQKIDITQRFHDRSFINCQANQIPTVVEKVVTSAVNKGYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPKKKDTREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFWAKENALNKDVLVVDFEGNEITFTKQDMMELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKTSLVLLGDPEAFDIGLKTNGQARLTQLCTLLKNYFNSEDEEMLENTATNDTGASQTTIDDQVEAPMSSNDSGEVTSDSTKTDINVLTEATMFKIDPMINMGEITPYDFIER
>CP029087.1|AWE65733.1|1773570_1776201_-|alanine--tRNA-ligase
MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNSQKAIRTNDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRIEGNFWDIGEGPSGPNTEIFYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLKVDMTTFESEMQQQRDRARQARQNSQSMQVQSEVLKNITSASTFVGYDTATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAPFSIELCGGIHVRNTSEIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVVEKLTQLQDEEKSLLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIVGGKGGGRPDMAQGGGTQPENISKSLSFIKDYIKNL
>CP029087.1|AWE67646.1|1773337_1773508_-|hypothetical-protein
MENFDKTMKFDYEELPTQDVRDVLNNVYRTLDERGYNAVNQIVGYLLSGDPAYIPR
>CP029087.1|AWE65709.1|1772815_1773244_-|putative-Holliday-junction-resolvase
MLQHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSLH
>CP029087.1|AWE67811.1|1772492_1772801_-|hypothetical-protein
MTEHNHDSQLEINNEEELLTLFDEEGNEVLYRKVLEFYHPEFKKEYVILAEEGAQSDEDDMIELVPMINEPDESGDGGKLVPIETDEEWDMIEEVVNTEMEE
>CP029087.1|AWE65738.1|1771569_1772208_-|methyltransferase-domain-protein
MDDLNKKYLIDLHQHQNSSIEVLREFAEGNEVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKGE
>CP029087.1|AWE65569.1|1770643_1771567_-|peptidase-U32-family-protein
MTELLVTPKSLSHMETLIDLGADAFVIGEQKFGLRLPGEFNRQQMTEAVALAHKNDKKVYAAVNGLFHNYHLDAVEDYINFLHEIRVDRIIFGDPAVVMYVKAQENPIPLHWNAETLVTNHFQCNYWGKRGASRAVLARELNLDEIINIKENSNVEIEVQVQGMTCMFQSKRMLLGNYYTFQDRQMKIERRNDEQSLLLYDEERQNNYPVYEDYNGTHIMSPNDICLIEELAPFFEAGIDSFKIDGILQTEEYINVVTEQYRQAIDLYNEDPEIYEDEKFMLIDPIEEIQPDHRPFDEGFLYKQTVY
>CP029087.1|AWE65894.1|1769363_1770632_-|putative-protease
MKTIEEIKSTPKTVMKKPELLAPAGNLEKLKIAVHYGADAVFLGGQEYGLRSNADNFTMEEIAEGVEFANRYGAKIYVTTNIIAHDENIEGLESYLRNLEKTGATGIIVADPLIIETCKEVAPKLEIHLSTQQSLSNYKAVEYWKEEGLDRVVLARETGAMEMREMKEKVDIEIEAFIHGAMCIAYSGRCTLSNHMTARDSNRGGCCQSCRWDYELLEVDDNGELDVFYNQGEVTPFAMSPKDLKLIESIPQMMDIGVDSLKIEGRMKSIHYIATVVSVYRKVIDAYAADPDNFKINPEWLIELDKCANRDTAPAFFEGTPGYEEQMFGQQQSKKSPFDFCGLVLDYNEDTKIATIQQRNNFKPGQEIEFFGPEIETFTQVVEAIYDEEGNSLDAARHPLQIVQIKVDRPIYPNNMMRKEIG
>CP029087.1|AWE67491.1|1768740_1769364_-|uridine-kinase
MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYADIIIPEGGSNKVAIDIMTTKIQSLVSKQ
>CP029087.1|AWE67462.1|1780385_1781504_-|tRNA-(5-methylaminomethyl-2-thiouridylate)-methyltransferase
MSNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCTATEDYNDVIEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGADYVATGHYARIHRHEDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLPAQPGDMITLDGKKMGKHSGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGDVCLGGATIDDVFKNEGQLNYVV
>CP029087.1|AWE66228.1|1781504_1782647_-|aminotransferase-class-V-family-protein
MEIYADYAATTPVKPEVVDAMMMIYNSHYGNPSSIHAKGRDARKYLDESRRQIAQLLGADTHEIIFTSGATESNNTAIKGIVKANEQLGNHIITSKIEHHSVLHVFEQLEREGFDVTYLDVDDTGAIDLDQLEETITDKTILVSIMFVNNEVGTVQQIYDIQDIIAETNAYFHVDAVQAIGHLDVKFDEFEIDAMSITAHKFGGPKGVGALLVKDHVTLDYPQLGGEQELKRRAGTENLAQIVGMAKALQLAEKNRDDNNIHLMNLKEQFLVKLQERAIPFELNGSMTDATGHIVNLYFPFVEVEMMLTLLDMAQIYVSSGSACTAGSTQPSHVLDAMFEDEERSNHSIRFSFNELTTENEINAIVAEIHKIYFKFKEES
>CP029087.1|AWE66196.1|1782958_1783972_+|luciferase-oxidoreductase,-group-1-family-protein
MAIKYSALNLVPIREGDDERTAINDMVKLAQHLDELSYERYWIAEHHNAPNLVSSATALLIQHTLEHTKHIRVGSGGIMLPNHAPLIVAEQFGTMATLFPNRVDLGLGRAPGTDMMTASALRRDQHDGVYKFPEEVSLLQQYFGPAHQQAYVRAYPAVGKNVPLYILGSSTDSAHLAARKGLPYVFAGHFAPQQMKEAIEIYKTLFEPSDVLDEPYVIVCLNTIVAENDDEAQYLASSMAQVMVSITRGRMQPVQPPTHDLQNILTPREYAMAMERQKISLIGSENTVQQKIQDFMETYGEVNEIMAISYIYDKDMQLDSYRRFKNVINQINEKNTL
>CP029087.1|AWE67514.1|1784208_1784355_-|hypothetical-protein
MSFMDKAKDAVEKFKNSDNEQVKNVKDKINEYTGSNNEEKKENEDKEK
>CP029087.1|AWE65719.1|1784394_1784577_-|hypothetical-protein
MADESKFDQFKGNVKETVGNVTDNKELEKEGQQDKATGKAKEVVENAKNKITDAIDKLKK
>CP029087.1|AWE66094.1|1784676_1785099_-|HTH-type-transcriptional-regulator-CymR
MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESEPPAQKQLWIRMRDAVRDVLDNTTLKYLAEYVDTSEDLDGYMFYI
>CP029087.1|AWE66134.1|1785183_1786458_+|sigma-54-interaction-domain-protein
MSTEPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRNALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYEPKTTSKSEQQLKEIYNNLLKQRP
>CP029087.1|AWE67016.1|1786618_1787392_-|thiF-family-protein
MKHQFSRNELAIGQQGLDLLKQQTVVILGVGGVGSFAAEALARTNIGHIILIDKDDVDITNVNRQLHALTTTVGQSKVSLMEERIKLINPDCKVTPLHMFYTEETYEEIFDNYDIDYFVDASDTIMYKVHLMKECLDRGIKVISSMGAANKTDPTRFTISDISKTHTDPMAKIIRQKLKKLGIRKGIPVVFSDESPIVIREDVKDIVGDKNAINRKGQMPPSSNAFVPSVVGLICASYVVNDVLKDIPVRRIKDKGQ
>CP029087.1|AWE68235.1|1787852_1789619_-|aspartate--tRNA-ligase
MSKRTTYCGLVTEAFLGQEITLKGWVNNRRDLGGLIFVDLRDREGIVQVVFNPAFSEEALKIAETVRSEYVVEVQGTVTKRDPETVNPKIKTGQVEVQVTNIKVINKSETPPFSINEENVNVDENIRLKYRYLDLRRQELAQTFKMRHQITRSIRQYLDDEGFFDIETPVLTKSTPEGARDYLVPSRVHDGEFYALPQSPQLFKQLLMISGFDKYYQIVKCFRDEDLRADRQPEFTQVDIEMSFVDQEDVMQMGEEMLKKVVKEVKGVEINGAFPRMTYKEAMRRYGSDKPDTRFEMELIDVSQLGRDMDFKVFKDTVENDGEIKAIVAKGAAEQYTRKDMDALTEFVNIYGAKGLAWVKVVEDGLTGPIGRFFETENVETLLTLTGAEAGDLVMFVADKPNVVAQSLGALRVKLAKELGLIDETKLNFLWVTDWPLLEYDEDAKRYVAAHHPFTSPKEADIAKLGTAPEEAEANAYDIVLNGYELGGGSIRIHDGELQEKMFEVLGFTKEQAQEQFGFLLDAFKYGAPPHGGIALGLDRLVMLLTNRTNLRDTIAFPKTASATCLLTNAPGEVSDKQLEELSLRIRH
>CP029087.1|AWE67997.1|1789634_1790897_-|histidine--tRNA-ligase
MIKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTNPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKAYLDDLGIPYIEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK

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Crispr_ID: CP029087_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029087_8

2178379-2178460

Orphan

Consensus_repeat	Method
GGCCCCCACCCCAACTTACATTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029087_8

>merge|CP029087|8|2178379-2178460|CRISPRCasFinder
GGCCCCCACCCCAACTTACATTGTTTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCCACCCCAACTTGCATTGT

>CP029087|8|7|2178379-2178460|CRISPRCasFinder
GGCCCCCACCCCAACTTACATTGT	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG
GGCCCCCACCCCAACTTGCATTGT

Protein	Signature genes	Signature genes Name	Protein_function
CP029087.1\|AWE66387.1\|2187565_2188129_+\|accessory-gene-regulator-protein-B	unknown	unknown	gnl\|CDD\|226899
CP029087.1\|AWE66815.1\|2170685_2170832_+\|hypothetical-protein	unknown	unknown	unknown
CP029087.1\|AWE67100.1\|2178601_2179909_+\|ktr-system-potassium-uptake-protein-B	unknown	unknown	gnl\|CDD\|273349
CP029087.1\|AWE67525.1\|2171345_2172059_+\|pemK-like-family-protein	unknown	unknown	gnl\|CDD\|367091
CP029087.1\|AWE67570.1\|2182140_2182425_-\|10-kDa-chaperonin	unknown	unknown	gnl\|CDD\|178988
CP029087.1\|AWE65999.1\|2172249_2173287_+\|integrase	unknown	unknown	gnl\|CDD\|271189
CP029087.1\|AWE65601.1\|2184823_2185450_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
CP029087.1\|AWE67356.1\|2175443_2176499_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369625
CP029087.1\|AWE66051.1\|2176934_2178158_+\|putative-succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|181490
CP029087.1\|AWE65765.1\|2183367_2184627_-\|putative-sdrH-protein	unknown	unknown	gnl\|CDD\|236768
CP029087.1\|AWE67548.1\|2169757_2170612_+\|HIRAN-domain-protein	unknown	unknown	gnl\|CDD\|214906
CP029087.1\|AWE67475.1\|2188131_2188275_+\|cyclic-lactone-autoinducer-peptide-family-protein	unknown	unknown	gnl\|CDD\|129030
CP029087.1\|AWE66792.1\|2173343_2174168_+\|sphingomyelin-phosphodiesterase	unknown	unknown	gnl\|CDD\|132436
CP029087.1\|AWE66443.1\|2182599_2183343_+\|CAAX-protease-self-immunity-family-protein	unknown	unknown	gnl\|CDD\|376806
CP029087.1\|AWE67706.1\|2170828_2171014_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376389
CP029087.1\|AWE65796.1\|2185810_2186596_+\|hydrolase,-carbon-nitrogen-family	unknown	unknown	gnl\|CDD\|143607
CP029087.1\|AWE67595.1\|2174405_2175422_-\|gamma-hemolysin-component-B	unknown	unknown	gnl\|CDD\|369625
CP029087.1\|AWE68073.1\|2171084_2171267_+\|hypothetical-protein	unknown	unknown	unknown
CP029087.1\|AWE66806.1\|2187195_2187330_-\|delta-hemolysin-domain-protein	unknown	unknown	gnl\|CDD\|173213
CP029087.1\|AWE67245.1\|2180448_2182065_-\|chaperonin-GroL	unknown	unknown	gnl\|CDD\|234573

Protein	Function_ID	Function_description	E-value
CP029087.1\|AWE66387.1\|2187565_2188129_+\|accessory-gene-regulator-protein-B	gnl\|CDD\|226899	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription].	6.65966e-71
CP029087.1\|AWE67100.1\|2178601_2179909_+\|ktr-system-potassium-uptake-protein-B	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	7.96864e-82
CP029087.1\|AWE67525.1\|2171345_2172059_+\|pemK-like-family-protein	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	0.000176738
CP029087.1\|AWE67570.1\|2182140_2182425_-\|10-kDa-chaperonin	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.94304e-45
CP029087.1\|AWE65999.1\|2172249_2173287_+\|integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.96401e-25
CP029087.1\|AWE65601.1\|2184823_2185450_+\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	8.42197e-117
CP029087.1\|AWE67356.1\|2175443_2176499_-\|hypothetical-protein	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.84035e-77
CP029087.1\|AWE66051.1\|2176934_2178158_+\|putative-succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	0
CP029087.1\|AWE65765.1\|2183367_2184627_-\|putative-sdrH-protein	gnl\|CDD\|236768	PRK10819, PRK10819, transport protein TonB; Provisional.	6.93152e-10
CP029087.1\|AWE67548.1\|2169757_2170612_+\|HIRAN-domain-protein	gnl\|CDD\|214906	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. HIRAN is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this protein functions as a DNA-binding domain that probably recognises features associated with damaged DNA or stalled replication forks.	5.87951e-12
CP029087.1\|AWE67475.1\|2188131_2188275_+\|cyclic-lactone-autoinducer-peptide-family-protein	gnl\|CDD\|129030	smart00794, AgrD, Staphylococcal AgrD protein. This family consists of several AgrD proteins from many Staphylococcus species. The agr locus was initially described in Staphylococcus aureus as an element controlling the production of exoproteins implicated in virulence. Its pattern of action has been shown to be complex, upregulating certain extracellular toxins and enzymes expressed post-exponentially and repressing some exponential-phase surface components. AgrD encodes the precursor of the autoinducing peptide (AIP).The AIP derived from AgrD by the action of AgrB interacts with AgrC in the membrane to activate AgrA, which upregulates transcription both from promoter P2, amplifying the response, and from P3, initiating the production of a novel effector: RNAIII. In S. aureus, delta-hemolysin is the only translation product of RNA III and is not involved in the regulatory functions of the transcript, which is therefore the primary agent for modulating the expression of other operons controlled by agr.	3.13559e-15
CP029087.1\|AWE66792.1\|2173343_2174168_+\|sphingomyelin-phosphodiesterase	gnl\|CDD\|132436	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins. [Cellular processes, Pathogenesis].	4.43323e-127
CP029087.1\|AWE66443.1\|2182599_2183343_+\|CAAX-protease-self-immunity-family-protein	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.67124e-11
CP029087.1\|AWE67706.1\|2170828_2171014_+\|hypothetical-protein	gnl\|CDD\|376389	pfam00815, Histidinol_dh, Histidinol dehydrogenase.	0.00485103
CP029087.1\|AWE65796.1\|2185810_2186596_+\|hydrolase,-carbon-nitrogen-family	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	5.69545e-126
CP029087.1\|AWE67595.1\|2174405_2175422_-\|gamma-hemolysin-component-B	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.05827e-99
CP029087.1\|AWE66806.1\|2187195_2187330_-\|delta-hemolysin-domain-protein	gnl\|CDD\|173213	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin.	8.25732e-15
CP029087.1\|AWE67245.1\|2180448_2182065_-\|chaperonin-GroL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0

>CP029087.1|AWE66051.1|2176934_2178158_+|putative-succinyl-diaminopimelate-desuccinylase
MTTFSEKEKIQLLADIVELQTENNNEIDVCNYLKDLFDKYDIKSEILKVNEHRANIVAEIGNGSPILALSGHMDVVDAGNQDNWTYPPFQLTEKAGKLYGRGTTDMKGGLMALVITLIELKEQNQLPQGTIRLLATAGEEKEQEGAKLLADKGYLDDVDGLIIAEPTGSGIYYAHKGSMSCKVTATGKAVHSSVPFIGDNAIDTLLEFYNQFKEKYSELKKHDTKHELDVAPMFKSLIGKEISEEDANYASGLTAVCSIINGGKQFNSVPDEASLEFNVRPVPEYDNDFIESFFQNIINDVDSNKLSLDIPSNHRPVTSDKNSKLITTIKDVASSYVEQDEIFVSALVGATDASSFLGDNKDNVDLAIFGPGNPLMAHQIDEYIEKDMYLKYIDIFKEASIQYLKEK
>CP029087.1|AWE67356.1|2175443_2176499_-|hypothetical-protein
MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKNSTVPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKFESHKEEKNSNWLKYPSEYHVDFQVKRNRKTEILDQLPKNKISTAKVDSTFSYSSGGKFDSTKGIGRTSSNSYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDLKYGGEVKNRNDELLFYRNTRIATVENPELSFASKYRYPALVRSGFNPEFLTYLSNEKSNEKTQFEVTYTRNQDILKNRPGIHYAPPILEKNKDGQRLIVTYEVDWKNKTVKVVDKYSDDNKPYKEG
>CP029087.1|AWE67595.1|2174405_2175422_-|gamma-hemolysin-component-B
MIKQLYKNITICSLAISTALTVFPATSYAKINSEIKAVSEKNLDGDTKMYTRTATTSDSQKNITQSLQFNFLTEPNYDKETVFIKAKGTIGSGLRILDPNGYWNSTLRWPGSYSVSIQNVDDNNNTNVTDFAPKNQDESREVKYTYGYKTGGDFSINRGGLTGNITKESNYSETISYQQPSYRTLLDQSTSHKGVGWKVEAHLINNMGHDHTRQLTNDSDNRTKSEIFSLTRNGNLWAKDNFTPKDKMPVTVSEGFNPEFLAVMSHDKKDKGKSQFVVHYKRSMDEFKIDWNRHGFWGYWSGENHVDKKEEKLSALYEVDWKTHDVKFVKVLNDNEKK
>CP029087.1|AWE66792.1|2173343_2174168_+|sphingomyelin-phosphodiesterase
MYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNIHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYNDFSDHYPIKAYSK
>CP029087.1|AWE65999.1|2172249_2173287_+|integrase
MKTRCYDGKKWQYEFKYEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDNYITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIMDVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEEDKKTTKILESM
>CP029087.1|AWE67525.1|2171345_2172059_+|pemK-like-family-protein
MTHNIEKRINKLKTSGNPKFKKLDSDIHYLLKRFEGEKNHKGFYPKFKQGEIVFVDFGINVNKEFSNSHFAIVMNKNDSNTEDIVNVIPLSSKENKKYLKMNFDLKWEYYLRLFLNLISAQNNSAILKEVFDKKYQKNNTEFITKDYFSEFISDSLEIENKLNKIDRNINNIVSAIDKVKKLKGNSYACINSFQPISKFRIRKVLPQKIKNPVIDSSDIMLLINRINNNILQIPDIR
>CP029087.1|AWE68073.1|2171084_2171267_+|hypothetical-protein
MKITNCKIKRETIVYEVLTSGNQPFTYELPKDLSSHNARKYLEFISQKIDGDKLTKEDSL
>CP029087.1|AWE67706.1|2170828_2171014_+|hypothetical-protein
MSTYKEIEHLHINTGGKELTQEQIEEAKAFIDSQEFKDMIREAKESHQRVMESKITDRTKL
>CP029087.1|AWE66815.1|2170685_2170832_+|hypothetical-protein
MDFKEVDINIEEWEMVEIPFYTEEELTYRLNNGLPITKSELEEQESKK
>CP029087.1|AWE67548.1|2169757_2170612_+|HIRAN-domain-protein
MKPRKQDEKILSDQYSYFEPIISDSCDIKFDENKRRMGSIFISHEEICFIRKEEDYIFKISLSEVIDYNTVVTIWKNQAFLTLNDNRKLTVYFVTNSPLTGFISILKTYMQLSKNKETIISNDCLPINDDEQTKVEIFDVVGLNYEGRRKELKKLIKKMKNNDDFFFLYSDLKGNELKEELLYEDKVYEISDYEVIPGVFLQKEPDNPYDENAIKVMISNEYSEFHVGYVPREYASRLVNHMDNIVSCNAYINGGKYKTLDYLEEKIVTKESDYGLRVHLEYKV
>CP029087.1|AWE67100.1|2178601_2179909_+|ktr-system-potassium-uptake-protein-B
MNKVHKPLYFYLMLFFSTTIIGALLLYLPFTGKKPISFLDALFIASSAFTVTGLSPVDIGSQFNILGEIVILLLIQIGGLGIVTVTLLTLVFLNRKISMKNRFLIMVTWNIDEPGGVIKLIKHLAIYSLVTELIGMICLCLSFIPKFGIGKGLFLSLFTSVSAFNNAGFALFKNNLIDYSSDPIVIITISILIIFGGIGHFVVIDFINCKKLSKLSLHSKLVLTTTSILIIIGAITFFLLEQFNTMQHMGLVEKIGNSFFQSVTTRTAGFNSIDIASINKSTALMLMLLMFIGGAPLSAAGGIKITTFAVAFIFVLNYIRKENNVSVFNKEISDKHIKLSIVTINISFLFISIITFILSIINPNISLIKLLFEVVSAFGTVGLSMNLTTEYHGITKIIIIFVMLCGKVGLLTLLRTFIPPKSPKNYRYTKGQIYL
>CP029087.1|AWE67245.1|2180448_2182065_-|chaperonin-GroL
MVKQLKFSEDARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVENKNEIAQVGAISAADEEIGRYISEAMEKVGNDGVITIEESNGLNTELEVVEGMQFDRGYQSPYMVTDSDKMVAELERPYILVTDKKISSFQDILPLLEQVVQSNRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVITDDLGLDLKDASIDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIEAEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEKNNDQPNMGGMPGMM
>CP029087.1|AWE67570.1|2182140_2182425_-|10-kDa-chaperonin
MLKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE
>CP029087.1|AWE66443.1|2182599_2183343_+|CAAX-protease-self-immunity-family-protein
MTRLWASLLTVIIYILSQFLPLLIVKKLPFVQYSGIELTKAVIYIQLVLFLIAATTIILINLKIKNPTKLELEVKEPKKYIIPWALLGFALVMIYQMVVSIVLTQIYGGQQVSPNTEKLIIIARKIPIFIFFVSIIGPLLEEYVFRKVIFGELFNAIKGNRIVAFIIATTVSSLIFALAHNDFKFIPVYFGMGVIFSLAYVWTKRLAVPIIIHMLQNGFVVIFQLLNPEALKKATEQANFIYHIFIP
>CP029087.1|AWE65765.1|2183367_2184627_-|putative-sdrH-protein
MSYHWFKKMLLSTSILILSSSSLGLATHTVEAKDNLNGEKPTTNLNHNITSPSVNSEMNNNETGTPHESNQTGNEGTGSNSRDANPDSNNVKPDSNNQNPSTDSKPDPNNQNPSPNPKPDPDNPKPKPDPKPDPDKPKPNLDPKPDPDNPKPKPDPKPDPDKPKPNPDPKPDPDKPKPNPNPKPDPNKPNPNPSPDPDQPGDSNHSGGSKNGRTWNPNASDGSNQGQWQPNGNQGNSQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEVTDEDIYNIIRKQNFSGNAYLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNESQRR
>CP029087.1|AWE65601.1|2184823_2185450_+|nitroreductase-family-protein
MGLFKKDKKAMTFDNAMEERRSIYNLKDSISISDDELESMIAHAVKHVPSSFNSQSTRIVLLLNDNNNKFWDNTKAILKEVMGENRDFEPTEQKIDNFKHSYGTILFYEDQDVVSGLQEQMPNYYDNFAIWSTQTNAMHQFAIWTALATKGIGASLQHYNPLVDEMTSKEFNIPKSWKLIAQMPFGDIREAAGEKTFNPVEDRFVIKK
>CP029087.1|AWE65796.1|2185810_2186596_+|hydrolase,-carbon-nitrogen-family
MKVQIYQLPIIFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNYQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLTAGENVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK
>CP029087.1|AWE66806.1|2187195_2187330_-|delta-hemolysin-domain-protein
MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFTKK
>CP029087.1|AWE66387.1|2187565_2188129_+|accessory-gene-regulator-protein-B
MNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQIIVGNFFKILVTYSISIFLSVFLFTLVTHLSYMLIRYNAHGAHAKSSILCYIQSILTFVFVPYFLINIDINFTYLLALSIIGLISVVIYAPAATKKQPIPIKLVKRKKYLSIIMYLLVLILSLIIHPFYAQFMLLGILVESITLLPIFFPKED
>CP029087.1|AWE67475.1|2188131_2188275_+|cyclic-lactone-autoinducer-peptide-family-protein
MNTLVNMFFDFIIKLAKAIGIVGGVNACSSLFDEPKVPAELTNLYDK

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Crispr_ID: CP029087_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029087_9

2307637-2307717

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP029087_9

>merge|CP029087|9|2307637-2307717|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTCAACTTTAGTTGTTAGGGGCTTCT

>CP029087|9|8|2307637-2307717|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCATGCGCTTAGCGCAGGCGCTCCTACTTTT
CAACTTTAGTTGTTAGGGGCTTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP029087.1\|AWE67879.1\|2300466_2301840_-\|EVE-domain-protein	unknown	unknown	gnl\|CDD\|376640
CP029087.1\|AWE67854.1\|2305285_2306263_+\|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	unknown	unknown	gnl\|CDD\|224151
CP029087.1\|AWE67796.1\|2315651_2317784_+\|phosphoenolpyruvate-dependent-sugar-phosphotransferase-system,-EIIA-2-family-protein	unknown	unknown	gnl\|CDD\|226234
CP029087.1\|AWE65720.1\|2311592_2313398_-\|glutamine-fructose-6-phosphate-transaminase	unknown	unknown	gnl\|CDD\|234729
CP029087.1\|AWE67786.1\|2309652_2310510_-\|HAD-hydrolase,-IIB-family-protein	unknown	unknown	gnl\|CDD\|223635
CP029087.1\|AWE66165.1\|2317795_2318230_+\|mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014
CP029087.1\|AWE67230.1\|2318229_2319336_+\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
CP029087.1\|AWE66800.1\|2308836_2308995_+\|hypothetical-protein	unknown	unknown	unknown
CP029087.1\|AWE66520.1\|2319654_2327100_-\|sasC/Mrp/FmtB-intercellular-aggregation-domain-protein	unknown	unknown	gnl\|CDD\|275089
CP029087.1\|AWE68092.1\|2302772_2303711_-\|mannose-6-phosphate-isomerase,-class-I	unknown	unknown	gnl\|CDD\|224399
CP029087.1\|AWE68180.1\|2298953_2299397_-\|DNA-protection-during-starvation-protein-1	unknown	unknown	gnl\|CDD\|223854
CP029087.1\|AWE67584.1\|2298122_2298833_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP029087.1\|AWE66172.1\|2299596_2300010_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225556
CP029087.1\|AWE68020.1\|2306528_2307620_+\|putative-membrane-protein	unknown	unknown	unknown
CP029087.1\|AWE68112.1\|2314078_2315617_+\|PTS-system-mannitol-specific-EIICB-component	unknown	unknown	gnl\|CDD\|225123
CP029087.1\|AWE68004.1\|2302511_2302742_-\|putative-membrane-protein	unknown	unknown	unknown
CP029087.1\|AWE66880.1\|2308673_2308844_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226950
CP029087.1\|AWE67352.1\|2304146_2304812_-\|3-beta-hydroxysteroid-dehydrogenase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|187554
CP029087.1\|AWE66615.1\|2304963_2305284_+\|HTH-type-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP029087.1\|AWE66475.1\|2310577_2311360_-\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224044

Protein	Function_ID	Function_description	E-value
CP029087.1\|AWE67879.1\|2300466_2301840_-\|EVE-domain-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	4.11455e-06
CP029087.1\|AWE67854.1\|2305285_2306263_+\|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.49165e-107
CP029087.1\|AWE67796.1\|2315651_2317784_+\|phosphoenolpyruvate-dependent-sugar-phosphotransferase-system,-EIIA-2-family-protein	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.02509e-68
CP029087.1\|AWE65720.1\|2311592_2313398_-\|glutamine-fructose-6-phosphate-transaminase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP029087.1\|AWE67786.1\|2309652_2310510_-\|HAD-hydrolase,-IIB-family-protein	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	2.39536e-58
CP029087.1\|AWE66165.1\|2317795_2318230_+\|mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
CP029087.1\|AWE67230.1\|2318229_2319336_+\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
CP029087.1\|AWE66520.1\|2319654_2327100_-\|sasC/Mrp/FmtB-intercellular-aggregation-domain-protein	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	1.3867e-108
CP029087.1\|AWE68092.1\|2302772_2303711_-\|mannose-6-phosphate-isomerase,-class-I	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
CP029087.1\|AWE68180.1\|2298953_2299397_-\|DNA-protection-during-starvation-protein-1	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
CP029087.1\|AWE67584.1\|2298122_2298833_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP029087.1\|AWE66172.1\|2299596_2300010_-\|hypothetical-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
CP029087.1\|AWE68112.1\|2314078_2315617_+\|PTS-system-mannitol-specific-EIICB-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP029087.1\|AWE66880.1\|2308673_2308844_+\|hypothetical-protein	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00028059
CP029087.1\|AWE67352.1\|2304146_2304812_-\|3-beta-hydroxysteroid-dehydrogenase/isomerase-family-protein	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
CP029087.1\|AWE66615.1\|2304963_2305284_+\|HTH-type-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
CP029087.1\|AWE66475.1\|2310577_2311360_-\|ABC-transporter-family-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.29094e-106

>CP029087.1|AWE68020.1|2306528_2307620_+|putative-membrane-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP029087.1|AWE67854.1|2305285_2306263_+|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter
MSHSHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>CP029087.1|AWE66615.1|2304963_2305284_+|HTH-type-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP029087.1|AWE67352.1|2304146_2304812_-|3-beta-hydroxysteroid-dehydrogenase/isomerase-family-protein
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>CP029087.1|AWE68092.1|2302772_2303711_-|mannose-6-phosphate-isomerase,-class-I
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP029087.1|AWE68004.1|2302511_2302742_-|putative-membrane-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP029087.1|AWE67879.1|2300466_2301840_-|EVE-domain-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVKKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP029087.1|AWE66172.1|2299596_2300010_-|hypothetical-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP029087.1|AWE68180.1|2298953_2299397_-|DNA-protection-during-starvation-protein-1
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP029087.1|AWE67584.1|2298122_2298833_+|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>CP029087.1|AWE66880.1|2308673_2308844_+|hypothetical-protein
MSPKDTTRFETKPDHQAQFDWKESINFKTKDNQRIPLYIGVLLLYYSRFIIMHNNE
>CP029087.1|AWE66800.1|2308836_2308995_+|hypothetical-protein
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>CP029087.1|AWE67786.1|2309652_2310510_-|HAD-hydrolase,-IIB-family-protein
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTLDVTAYTNEEDGAAKYLAKHFLAD
>CP029087.1|AWE66475.1|2310577_2311360_-|ABC-transporter-family-protein
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATTGGVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEVRNEAHHLLKLVGISAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLNILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>CP029087.1|AWE65720.1|2311592_2313398_-|glutamine-fructose-6-phosphate-transaminase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEDGTPVVALATQENVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP029087.1|AWE68112.1|2314078_2315617_+|PTS-system-mannitol-specific-EIICB-component
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP029087.1|AWE67796.1|2315651_2317784_+|phosphoenolpyruvate-dependent-sugar-phosphotransferase-system,-EIIA-2-family-protein
MLLSTREKEMIALLIKYHSQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP029087.1|AWE66165.1|2317795_2318230_+|mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>CP029087.1|AWE67230.1|2318229_2319336_+|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>CP029087.1|AWE66520.1|2319654_2327100_-|sasC/Mrp/FmtB-intercellular-aggregation-domain-protein
MNLFRQQKFSIRKFNVGIFSALIATVTFISTNPTTASAAEQNQPAQNQPAQPADANTQPNANAGAQANPAAQPANQGGQANPAGGAAQPAGQGNQADPNNAAQAQPGNQAAPANQAGQGNNQATPNNNATPANQTQPANAPAAAQPAAPVAANAQTQDPNASNTGEGSINTTLTFDDPAISTDENRQDPTVTVTDKVNGYSLINNGKIGFVNSELRRSDMFDKNNPQNYQAKGNVAALGRVNANDSTDHGNFNGITKTVNVKPDSELIINFTTMQTNSKQGATNLVIKDAKKNTELATVNVAKTGTAHLFKVPTDADRLDLQFIPDNTAVADASRITTNKDGYKYYSFIDNVGLFSGSHLYVKNRDLAPKATNNKEYTINTEIGNNGNFGASLKADQFKYEVTLPQGVTYVNDSLTTTFPNGNEDSTVLKNMTVNYDQTANKVTFTSQGVTTARGTHTKEVLFPDKSLKLSYKVNVANIDTPKNIDFNEKLTYRTASDVVINNAQPEVTLTADPFSVAVEMNKDALQQQVNSQVDNSHYTTASIAEYNKLKQQADTILNEDANHVETANRASQADIDGLVTKLQAALIDNQAAIAELDTKAQEKVTAAQQSKKVTQDEVAALVTKINNDKNNAIAEINKQITSQGVTTEKDNGIAVLEQDVITPTVKPQAKQDIIQAVTTRKQQIKKSNASLQDEKDVANDKIGKIETKAIKDIDAATTNAQVEAIKTKAINDINQTTPATTAKAAALEEFDEVVQAQIDQAPLNPDTTNEEVAEAIERINAAKVSGVKAIEATTTAQDLERVKNEEIFKIENITDSTQTKMDAYKEVRQAATARKAQNATVSNATDEKVAEANAAVDAAQTEGLHDIQVVKSQQEVADTKAKVLDKINAIQTQAKVKPAADTEVENAYNTRKQEIQNSNASTTEEKEAAYTELDAKKQEARTNLDAANTNSDVTTAKDNGIAAINQVQAATTKKSDAKAEIAQKASERKTAIEAMNDSTTEEQQAAKDKVDQAVVTANADIDNATANTDVDNAKTTNEATIAAITPDANVKPAAKQAIADKVQAQETAIDANNGSTTEEKEAAKQQVQTEKTAADAAIDAAHSNVEVEAAKNAEIAKIEAIQPATTTKDNAKQAIATKANERKTAIAQTQDITAEEIAAANADVDNAVTQANSNIEAANSQNDVDQAKTTGETSIDQVTPTVNKKATARNEITAILNNKLQEIQATPDATDEEKQAADAEANTENGKANQAISAATTNAQVDEAKANAEAAINAVTPKVVKKQAAKDEIDQLQATQTNVINNDQNATNEEKEAAIQQLATAVTDAKNNITAATDDNGVDTAKDAGKNSIQSTQPATAVKSNAKNEVDQAVTTQNQAIDNTTGATTEEKNAAKDLVLKAKEKAYQDILNAQTTNDVTQIKDQAVADIQGITADTTIKDVAKDELATKANEQKALIAQTADATTEEKEQANQQVDAQLTQGNQNIENAQSIDDVNTAKDNAIQAIDPIQASTDVKTNARAELLTEMQNKITEILNNNETTNEEKGNDIGPVRAAYEEGLNNINAATTTGDVTTAKDTAVQKVQQLHANPVKKPAGKKELDQAAADKKTQIEQTPNASQQEINDAKQEVDTELNQAKTNVDQSSTNEYVDNAVKEGKAKINAVKTFSEYKKDALAKIEDAYNAKVNEADNSNASTSSEIAEAKQKLAELKQTADQNVNQATSKDDIEVQIHNDLDNINDYTIPTGKKESATTDLYAYADQKKNNISADTNATQDEKQQAIKQVDQNVQTALENINNGVDNGDVDDALTQGKAAIDTIQVDATVKPKANQAIEAKAEDTKESIDHSDQLTAEEKTEALAMIKQITDQAKQGITDATTTAEVEKAKAQGLEAFDNIQIDSTEKQKAIEELETALDQIEAGVNVDADATTEEKEAFTNALEDILSKATEDISDQTTNAEIATVKNSALEQLKAQRINPVVKKNALEAIREVVNKQIEIIKNADADASAKEIARTDLGRYFDRFADKLDKTQTNTEVAELQNVTIPAIEAIVPQNDPDANDTNNGTDNNDATANSNANATPENTGQPNVSETTDNGKADASPTTPNNSDAATGETTVTSATDDAKDKPQANNNSSADASTNSPTMDNDVTSKPEVESTNNGTTDKPVTETDNATPAESTTNNNSTTTATNENAPTGSTATAPTTASTEAASSADSKDNASVNDSKQNAEVNNSAESQSTNGKVAQPKSENKAKAEKDGRDSTNQSMVESTTETLPSADITEPNVPSNTSKDKEESTTNQTDAGQLKSETNVASNEADKSPSKADTEVSNKPSTSASSEAKDKMTSTNVSQKDDTATADTNDTQKSVGPVANNKAKDMQTNDTQKSVGSAANNKATQNDGANASPATVSNGSHSMHQDMLNVTKPEENKANAKSDQQGKVNKPKQQAKTLPDTGMSHNDDLPYAELALGAGMAFLIRRFTKKDQQTEE

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Crispr_ID: CP029087_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029087_11

2427998-2428078

Orphan

Consensus_repeat	Method
TCTATGTTGGGGCCCCGCCAACTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029087_11

>merge|CP029087|11|2427998-2428078|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTG

>CP029087|11|10|2427998-2428078|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACTTG	CACATTATTGTAAGCTGACTTTCTGTCAGCT
TCTGTGTTGGGGCCCCGCCAACTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP029087.1\|AWE66285.1\|2425548_2425989_+\|marR-family-protein	unknown	unknown	gnl\|CDD\|197670
CP029087.1\|AWE65704.1\|2429869_2430103_-\|molybdopterin-converting-factor,-subunit-1	unknown	unknown	gnl\|CDD\|340452
CP029087.1\|AWE68130.1\|2432868_2433375_-\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|223595
CP029087.1\|AWE65740.1\|2430568_2431054_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
CP029087.1\|AWE67537.1\|2433405_2434410_-\|thiF-family-protein	unknown	unknown	gnl\|CDD\|181084
CP029087.1\|AWE68053.1\|2418531_2418696_+\|hypothetical-protein	unknown	unknown	unknown
CP029087.1\|AWE67791.1\|2419441_2422609_-\|swarming-motility-protein-SwrC	unknown	unknown	gnl\|CDD\|223911
CP029087.1\|AWE66820.1\|2422725_2423991_-\|glycine-glycyltransferase	unknown	unknown	gnl\|CDD\|225224
CP029087.1\|AWE66608.1\|2417490_2418399_-\|membrane-transport-family-protein	unknown	unknown	gnl\|CDD\|223751
CP029087.1\|AWE66350.1\|2429263_2429863_-\|putative-molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234725
CP029087.1\|AWE68038.1\|2434579_2435185_-\|AAA-domain-protein	unknown	unknown	gnl\|CDD\|226628
CP029087.1\|AWE66909.1\|2425981_2427193_+\|sugar-(and-other)-transporter-family-protein	unknown	unknown	gnl\|CDD\|341042
CP029087.1\|AWE65646.1\|2427294_2427645_-\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
CP029087.1\|AWE65670.1\|2424622_2425387_-\|glyoxalase-like-domain-protein	unknown	unknown	gnl\|CDD\|379203
CP029087.1\|AWE65818.1\|2430108_2430555_-\|molybdopterin-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|223391
CP029087.1\|AWE67060.1\|2432372_2432867_+\|molybdenum-cofactor-biosynthesis-protein-C	unknown	unknown	gnl\|CDD\|236483
CP029087.1\|AWE66718.1\|2431050_2432310_-\|molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|238452
CP029087.1\|AWE66555.1\|2418940_2419258_+\|putative-membrane-protein	unknown	unknown	unknown
CP029087.1\|AWE67346.1\|2416952_2417084_-\|putative-nitrogen-regulation-protein-NIFR3	unknown	unknown	unknown
CP029087.1\|AWE67370.1\|2428221_2429244_-\|molybdenum-cofactor-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|274250

Protein	Function_ID	Function_description	E-value
CP029087.1\|AWE66285.1\|2425548_2425989_+\|marR-family-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.35323e-15
CP029087.1\|AWE65704.1\|2429869_2430103_-\|molybdopterin-converting-factor,-subunit-1	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	8.16473e-25
CP029087.1\|AWE68130.1\|2432868_2433375_-\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	2.42221e-64
CP029087.1\|AWE65740.1\|2430568_2431054_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	9.59347e-51
CP029087.1\|AWE67537.1\|2433405_2434410_-\|thiF-family-protein	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	6.83722e-133
CP029087.1\|AWE67791.1\|2419441_2422609_-\|swarming-motility-protein-SwrC	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
CP029087.1\|AWE66820.1\|2422725_2423991_-\|glycine-glycyltransferase	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	1.81413e-143
CP029087.1\|AWE66608.1\|2417490_2418399_-\|membrane-transport-family-protein	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	7.28102e-43
CP029087.1\|AWE66350.1\|2429263_2429863_-\|putative-molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	2.15389e-66
CP029087.1\|AWE68038.1\|2434579_2435185_-\|AAA-domain-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	1.78595e-116
CP029087.1\|AWE66909.1\|2425981_2427193_+\|sugar-(and-other)-transporter-family-protein	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.92881e-73
CP029087.1\|AWE65670.1\|2424622_2425387_-\|glyoxalase-like-domain-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.50083e-38
CP029087.1\|AWE65818.1\|2430108_2430555_-\|molybdopterin-synthase-catalytic-subunit	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	6.99133e-58
CP029087.1\|AWE67060.1\|2432372_2432867_+\|molybdenum-cofactor-biosynthesis-protein-C	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	2.93711e-97
CP029087.1\|AWE66718.1\|2431050_2432310_-\|molybdopterin-molybdenumtransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	4.50966e-159
CP029087.1\|AWE65646.1\|2427294_2427645_-\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
CP029087.1\|AWE67370.1\|2428221_2429244_-\|molybdenum-cofactor-biosynthesis-protein-A	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.0538e-165

>CP029087.1|AWE65646.1|2427294_2427645_-|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>CP029087.1|AWE66909.1|2425981_2427193_+|sugar-(and-other)-transporter-family-protein
MTNQGSLNKSPIFTKSFTINFFVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETDVINKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>CP029087.1|AWE66285.1|2425548_2425989_+|marR-family-protein
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>CP029087.1|AWE65670.1|2424622_2425387_-|glyoxalase-like-domain-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>CP029087.1|AWE66820.1|2422725_2423991_-|glycine-glycyltransferase
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYILNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>CP029087.1|AWE67791.1|2419441_2422609_-|swarming-motility-protein-SwrC
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASAPNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHVDGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>CP029087.1|AWE66555.1|2418940_2419258_+|putative-membrane-protein
MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>CP029087.1|AWE68053.1|2418531_2418696_+|hypothetical-protein
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>CP029087.1|AWE66608.1|2417490_2418399_-|membrane-transport-family-protein
MTEQFTMIILLIALGYFLKRINFIKATDSQVIATLVLNVTLPSLVIVNLNSAELKLSFSILPILMIIYGIVAKMIAVWFFRKYDNHMRGSVGMMTGAMNIGLFAYPLIEVIWPKTGLIYFGMADIGGAFVMFGITYFVGSYFSEGSDQFDFKYLGKKLLQSVPLVTYIVMFILNINHIHLPHVAIDFFSILSHANMPLSMILLGVMLNFTLERKYIPATIKYLCLHYGLALVAGLLVHVLLPVSDDMIKTTLLVTWMFPVGVAIISYGIQFKYRTLPFIGMTTNLTIIISIIILYVYQAVFV
>CP029087.1|AWE67346.1|2416952_2417084_-|putative-nitrogen-regulation-protein-NIFR3
MYGAYLINEYHQDFKSIANFKVLKRMINVMMCYCVLFLEPRIS
>CP029087.1|AWE67370.1|2428221_2429244_-|molybdenum-cofactor-biosynthesis-protein-A
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>CP029087.1|AWE66350.1|2429263_2429863_-|putative-molybdenum-cofactor-guanylyltransferase
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNIYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>CP029087.1|AWE65704.1|2429869_2430103_-|molybdopterin-converting-factor,-subunit-1
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>CP029087.1|AWE65818.1|2430108_2430555_-|molybdopterin-synthase-catalytic-subunit
MKQFEIVIEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>CP029087.1|AWE65740.1|2430568_2431054_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKTHGYTVATIKHHGHAKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRDEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>CP029087.1|AWE66718.1|2431050_2432310_-|molybdopterin-molybdenumtransferase
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETKTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQKDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>CP029087.1|AWE67060.1|2432372_2432867_+|molybdenum-cofactor-biosynthesis-protein-C
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIFKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQSGQ
>CP029087.1|AWE68130.1|2432868_2433375_-|molybdenum-cofactor-biosynthesis-protein-B
MGEHQNVKLNRTVKAAVLTVSDTRDFVTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>CP029087.1|AWE67537.1|2433405_2434410_-|thiF-family-protein
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDGCIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSDCTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>CP029087.1|AWE68038.1|2434579_2435185_-|AAA-domain-protein
MLKINVKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTTKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSKHIDQLIQTLNINHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029087_3	3.1\|820199\|31\|CP029087\|CRISPRCasFinder	820199-820229	31	CP029087.1	310274-310304	0	1.0
CP029087_8	8.1\|2178403\|34\|CP029087\|CRISPRCasFinder	2178403-2178436	34	CP029087.1	820174-820207	0	1.0
CP029087_8	8.1\|2178403\|34\|CP029087\|CRISPRCasFinder	2178403-2178436	34	CP029087.1	1175474-1175507	0	1.0
CP029087_3	3.1\|820199\|31\|CP029087\|CRISPRCasFinder	820199-820229	31	CP029087.1	310219-310249	1	0.968
CP029087_6	6.1\|1747144\|33\|CP029087\|CRISPRCasFinder	1747144-1747176	33	CP029087.1	1387161-1387193	1	0.97
CP029087_8	8.1\|2178403\|34\|CP029087\|CRISPRCasFinder	2178403-2178436	34	CP029087.1	1872376-1872409	1	0.971
CP029087_11	11.1\|2428023\|31\|CP029087\|CRISPRCasFinder	2428023-2428053	31	CP029087.1	832859-832889	1	0.968
CP029087_11	11.1\|2428023\|31\|CP029087\|CRISPRCasFinder	2428023-2428053	31	CP029087.1	832915-832945	1	0.968
CP029087_7	7.2\|1780178\|22\|CP029087\|PILER-CR	1780178-1780199	22	CP029087.1	2178348-2178369	2	0.909
CP029087_7	7.2\|1780178\|22\|CP029087\|PILER-CR	1780178-1780199	22	CP029087.1	2178465-2178486	2	0.909
CP029087_8	8.1\|2178403\|34\|CP029087\|CRISPRCasFinder	2178403-2178436	34	CP029087.1	1391534-1391567	2	0.941
CP029087_8	8.1\|2178403\|34\|CP029087\|CRISPRCasFinder	2178403-2178436	34	CP029087.1	2868365-2868398	2	0.941
CP029087_11	11.1\|2428023\|31\|CP029087\|CRISPRCasFinder	2428023-2428053	31	CP029087.1	88433-88463	2	0.935
CP029087_11	11.1\|2428023\|31\|CP029087\|CRISPRCasFinder	2428023-2428053	31	CP029087.1	386607-386637	2	0.935
CP029087_11	11.1\|2428023\|31\|CP029087\|CRISPRCasFinder	2428023-2428053	31	CP029087.1	653815-653845	2	0.935
CP029087_11	11.1\|2428023\|31\|CP029087\|CRISPRCasFinder	2428023-2428053	31	CP029087.1	832971-833001	2	0.935
CP029087_11	11.1\|2428023\|31\|CP029087\|CRISPRCasFinder	2428023-2428053	31	CP029087.1	869189-869219	2	0.935
CP029087_11	11.1\|2428023\|31\|CP029087\|CRISPRCasFinder	2428023-2428053	31	CP029087.1	1035156-1035186	2	0.935
CP029087_11	11.1\|2428023\|31\|CP029087\|CRISPRCasFinder	2428023-2428053	31	CP029087.1	1181019-1181049	2	0.935
CP029087_11	11.1\|2428023\|31\|CP029087\|CRISPRCasFinder	2428023-2428053	31	CP029087.1	1387119-1387149	2	0.935
CP029087_11	11.1\|2428023\|31\|CP029087\|CRISPRCasFinder	2428023-2428053	31	CP029087.1	1475495-1475525	2	0.935
CP029087_11	11.1\|2428023\|31\|CP029087\|CRISPRCasFinder	2428023-2428053	31	CP029087.1	1475611-1475641	2	0.935
CP029087_11	11.1\|2428023\|31\|CP029087\|CRISPRCasFinder	2428023-2428053	31	CP029087.1	1761782-1761812	2	0.935
CP029087_11	11.1\|2428023\|31\|CP029087\|CRISPRCasFinder	2428023-2428053	31	CP029087.1	2417222-2417252	2	0.935
CP029087_11	11.1\|2428023\|31\|CP029087\|CRISPRCasFinder	2428023-2428053	31	CP029087.1	2592860-2592890	2	0.935

1. spacer 3.1|820199|31|CP029087|CRISPRCasFinder matches to position: 310274-310304, mismatch: 0, identity: 1.0

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattgcc	Protospacer
*******************************

2. spacer 8.1|2178403|34|CP029087|CRISPRCasFinder matches to position: 820174-820207, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

3. spacer 8.1|2178403|34|CP029087|CRISPRCasFinder matches to position: 1175474-1175507, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

4. spacer 3.1|820199|31|CP029087|CRISPRCasFinder matches to position: 310219-310249, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattacc	Protospacer
****************************.**

5. spacer 6.1|1747144|33|CP029087|CRISPRCasFinder matches to position: 1387161-1387193, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

6. spacer 8.1|2178403|34|CP029087|CRISPRCasFinder matches to position: 1872376-1872409, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

7. spacer 11.1|2428023|31|CP029087|CRISPRCasFinder matches to position: 832859-832889, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

8. spacer 11.1|2428023|31|CP029087|CRISPRCasFinder matches to position: 832915-832945, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

9. spacer 7.2|1780178|22|CP029087|PILER-CR matches to position: 2178348-2178369, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

10. spacer 7.2|1780178|22|CP029087|PILER-CR matches to position: 2178465-2178486, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

11. spacer 8.1|2178403|34|CP029087|CRISPRCasFinder matches to position: 1391534-1391567, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

12. spacer 8.1|2178403|34|CP029087|CRISPRCasFinder matches to position: 2868365-2868398, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

13. spacer 11.1|2428023|31|CP029087|CRISPRCasFinder matches to position: 88433-88463, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

14. spacer 11.1|2428023|31|CP029087|CRISPRCasFinder matches to position: 386607-386637, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

15. spacer 11.1|2428023|31|CP029087|CRISPRCasFinder matches to position: 653815-653845, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

16. spacer 11.1|2428023|31|CP029087|CRISPRCasFinder matches to position: 832971-833001, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

17. spacer 11.1|2428023|31|CP029087|CRISPRCasFinder matches to position: 869189-869219, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

18. spacer 11.1|2428023|31|CP029087|CRISPRCasFinder matches to position: 1035156-1035186, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

19. spacer 11.1|2428023|31|CP029087|CRISPRCasFinder matches to position: 1181019-1181049, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

20. spacer 11.1|2428023|31|CP029087|CRISPRCasFinder matches to position: 1387119-1387149, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

21. spacer 11.1|2428023|31|CP029087|CRISPRCasFinder matches to position: 1475495-1475525, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

22. spacer 11.1|2428023|31|CP029087|CRISPRCasFinder matches to position: 1475611-1475641, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

23. spacer 11.1|2428023|31|CP029087|CRISPRCasFinder matches to position: 1761782-1761812, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

24. spacer 11.1|2428023|31|CP029087|CRISPRCasFinder matches to position: 2417222-2417252, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

25. spacer 11.1|2428023|31|CP029087|CRISPRCasFinder matches to position: 2592860-2592890, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029087_10	10.1\|2319985\|34\|CP029087\|CRISPRCasFinder	2319985-2320018	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
CP029087_10	10.1\|2319985\|34\|CP029087\|CRISPRCasFinder	2319985-2320018	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765

1. spacer 10.1|2319985|34|CP029087|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **

2. spacer 10.1|2319985|34|CP029087|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12282 : 69079

Bacillus_phage(28.57%)

tRNA,transposase,integrase

attL 10522:10538|attR 73078:73094

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
10522:10538	attL	NA	NA	NA	NA
AWE67354.1\|12282_13569_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.5e-88	50.9
AWE67407.1\|14219_14915_+	azlC family protein	NA	NA	NA	NA
AWE65821.1\|14911_15241_+	branched-chain amino acid transport family protein	NA	NA	NA	NA
AWE67010.1\|15603_16572_+	alpha/beta hydrolase fold family protein	NA	NA	NA	NA
AWE67762.1\|16879_17803_+	hypothetical protein	NA	NA	NA	NA
AWE68129.1\|17817_19785_+	DHH family protein	NA	NA	NA	NA
AWE66729.1\|19781_20228_+	ribosomal protein L9	NA	NA	NA	NA
AWE68176.1\|20259_21660_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	5.4e-111	48.1
AWE66025.1\|21937_23221_+	adenylosuccinate synthase	L7Y4J5	Megavirus	1.8e-68	34.6
AWE67109.1\|24423_25125_+	transcriptional regulatory protein WalR	W8CYM9	Bacillus_phage	3.5e-42	39.2
AWE67111.1\|25212_26964_+	sensor protein kinase WalK	W8CYF6	Bacillus_phage	2.6e-30	31.3
AWE67094.1\|26956_28291_+	yycH family protein	NA	NA	NA	NA
AWE65588.1\|28291_29080_+	yycH family protein	NA	NA	NA	NA
AWE67340.1\|29486_30269_+	metallo-beta-lactamase superfamily protein	A0A0C5AJ83	Bacteriophage	1.3e-37	36.2
AWE65652.1\|30549_32814_+	LPXTG cell wall anchor domain protein	NA	NA	NA	NA
AWE67510.1\|33045_33183_-	putative membrane protein	NA	NA	NA	NA
AWE66447.1\|33181_33661_+	rRNA large subunit m3Psi methyltransferase RlmH	NA	NA	NA	NA
AWE66302.1\|33982_35239_+	hypothetical protein	NA	NA	NA	NA
AWE67896.1\|35653_35893_+	hypothetical protein	NA	NA	NA	NA
AWE65878.1\|35924_36599_-\|transposase	transposase IS66 family protein	A0A0N9RU54	Staphylococcus_phage	2.6e-127	99.1
AWE66947.1\|36689_36842_-	replication family protein	A0A286QS97	Streptococcus_phage	1.3e-07	59.2
AWE67293.1\|36899_37397_-	replication family protein	NA	NA	NA	NA
AWE66208.1\|37917_39180_-	plasmid recombination enzyme family protein	NA	NA	NA	NA
AWE67515.1\|39686_40085_-	glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein	NA	NA	NA	NA
AWE67931.1\|40307_41033_-	kanamycin nucleotidyltransferase	NA	NA	NA	NA
AWE66243.1\|41270_41945_-\|transposase	transposase IS66 family protein	A0A0N9RU54	Staphylococcus_phage	2.6e-127	99.1
AWE66548.1\|42209_42953_+	glycerophosphoryl diester phosphodiesterase family protein	NA	NA	NA	NA
AWE66311.1\|43049_43478_+	metal-binding domain of MaoC dehydratase family protein	NA	NA	NA	NA
AWE67792.1\|43523_45530_-	penicillin-binding protein 2'	NA	NA	NA	NA
AWE66416.1\|45731_47387_+	methicillin resistance mecR1 protein	NA	NA	NA	NA
AWE65957.1\|47386_47758_+	methicillin resistance regulatory protein MecI	NA	NA	NA	NA
AWE66029.1\|48475_49375_+	ROK family protein	NA	NA	NA	NA
AWE66104.1\|49488_49749_-	rhodanese-like domain protein	NA	NA	NA	NA
AWE66888.1\|49884_50823_-	metallo-beta-lactamase superfamily protein	NA	NA	NA	NA
AWE68149.1\|50855_51920_-	rhodanese-like domain protein	NA	NA	NA	NA
AWE67381.1\|52055_52316_+	metal-sensitive transcriptional repressor family protein	NA	NA	NA	NA
AWE66777.1\|52330_52960_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
AWE67335.1\|53298_53961_-	methionine biosynthesis MetW family protein	NA	NA	NA	NA
AWE66542.1\|54494_55226_+	rRNA adenine N-6-methyltransferase	E4ZFQ0	Streptococcus_phage	1.9e-51	47.5
AWE65639.1\|55351_56134_-	streptomycin 3''-adenylyltransferase	NA	NA	NA	NA
AWE66436.1\|56284_56662_-\|transposase	transposase C family protein	NA	NA	NA	NA
AWE65832.1\|56668_58561_-\|integrase	phage integrase family protein	NA	NA	NA	NA
AWE66611.1\|58557_59643_-\|integrase	phage integrase, N-terminal SAM-like domain protein	A0A0A8WIF9	Clostridium_phage	4.5e-12	28.3
AWE67435.1\|59761_60079_-	radC-like JAB domain protein	NA	NA	NA	NA
AWE66628.1\|60099_60606_-	hypothetical protein	NA	NA	NA	NA
AWE68263.1\|60623_60860_-	hypothetical protein	NA	NA	NA	NA
AWE66331.1\|61021_61372_-	hypothetical protein	NA	NA	NA	NA
AWE68148.1\|61889_63518_-	ogr/Delta-like zinc finger family protein	A0A0S2SXR4	Bacillus_phage	2.4e-46	31.4
AWE67944.1\|63539_64889_-	recombinase zinc beta ribbon domain protein	Q9T200	Bacillus_phage	1.4e-18	25.1
AWE66834.1\|65122_66916_-	hypothetical protein	NA	NA	NA	NA
AWE67978.1\|66915_67212_-	hypothetical protein	NA	NA	NA	NA
AWE66796.1\|67404_68451_-	hypothetical protein	NA	NA	NA	NA
AWE67744.1\|68701_69079_-\|integrase	integrase core domain protein	A0A0N9SIX5	Staphylococcus_phage	1.4e-61	95.2
73078:73094	attR	NA	NA	NA	NA

DBSCAN-SWA_2

757347 : 765168

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE65879.1\|757347_758403_-	histidine protein kinase SaeS	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
AWE67966.1\|758402_759089_-	response regulator	NA	NA	NA	NA
AWE66299.1\|759063_759537_-	doxX family protein	NA	NA	NA	NA
AWE67156.1\|759879_760320_-	electron transfer DM13 family protein	NA	NA	NA	NA
AWE67141.1\|760599_761184_-	putative membrane protein	NA	NA	NA	NA
AWE67784.1\|761282_761996_-	7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AWE66974.1\|761999_762419_-	queuosine biosynthesis protein QueD	S4U060	uncultured_phage	6.3e-07	28.7
AWE66450.1\|762420_763089_-	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AWE66063.1\|763439_764033_+	glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
AWE66449.1\|764016_765168_+	chorismate binding enzyme family protein	S4VNU7	Pandoravirus	6.0e-23	35.7

DBSCAN-SWA_3

777139 : 791780

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE66650.1\|777139_778198_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7
AWE67030.1\|778536_779079_+	putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AWE67277.1\|779957_780875_-	putative lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
AWE67183.1\|781144_782650_-	H+ symporter family protein	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AWE67821.1\|782990_783491_-	7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AWE66924.1\|783510_784377_-	multidrug resistance efflux transporter family protein	NA	NA	NA	NA
AWE66356.1\|785177_785576_+	nrdI protein	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AWE65770.1\|785538_787644_+	ribonucleoside-diphosphate reductase, alpha subunit	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AWE67487.1\|787761_788733_+	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AWE68034.1\|789107_790079_+	fecCD transport family protein	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
AWE67154.1\|790065_791022_+	fecCD transport family protein	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AWE66495.1\|791018_791780_+	ABC transporter family protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.5e-18	31.6

DBSCAN-SWA_4

1036666 : 1045139

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE67606.1\|1036666_1037149_+	phosphoribosylaminoimidazole carboxylase, catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	8.0e-22	44.7
AWE66458.1\|1037135_1038260_+	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA
AWE65987.1\|1038263_1038968_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AWE67851.1\|1038967_1039231_+	phosphoribosylformylglycinamidine synthase, purS protein	NA	NA	NA	NA
AWE68009.1\|1039232_1039904_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
AWE66484.1\|1039896_1042086_+	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	3.5e-141	39.8
AWE66325.1\|1042064_1043549_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-45	31.7
AWE66349.1\|1043541_1044570_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
AWE66268.1\|1044572_1045139_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_5

1096694 : 1142638

Staphylococcus_phage(63.08%)

tail,capsid,portal,holin,head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE67939.1\|1096694_1097177_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.6e-28	46.2
AWE66322.1\|1097238_1098378_-	HIGH Nucleotidyl Transferase family protein	NA	NA	NA	NA
AWE67701.1\|1098504_1099062_+	hypothetical protein	NA	NA	NA	NA
AWE65983.1\|1099141_1099315_+	ribosomal protein L32	NA	NA	NA	NA
AWE68008.1\|1099431_1100817_-	recombinase family protein	I1W625	Staphylococcus_phage	2.5e-265	100.0
AWE66113.1\|1100925_1101105_+	putative excisionase	Q4ZBP0	Staphylococcus_phage	3.7e-25	100.0
AWE67068.1\|1101084_1102017_-	hypothetical protein	A0EX19	Staphylococcus_virus	6.7e-174	100.0
AWE67133.1\|1102156_1102324_-	hypothetical protein	Q4ZDJ4	Staphylococcus_virus	1.7e-24	100.0
AWE66446.1\|1102393_1103113_-	helix-turn-helix domain protein	A0A2H4PQQ2	Staphylococcus_phage	1.3e-132	100.0
AWE67804.1\|1103254_1103473_+	helix-turn-helix family protein	Q8SDX1	Staphylococcus_phage	2.9e-35	100.0
AWE66648.1\|1103488_1104277_+	BRO family, N-terminal domain protein	A0EWP1	Staphylococcus_virus	4.2e-145	100.0
AWE65981.1\|1104293_1104488_+	hypothetical protein	E9LT75	Staphylococcus_phage	1.2e-29	100.0
AWE66785.1\|1104540_1104717_+	hypothetical protein	S4SVC9	Staphylococcus_phage	9.7e-26	100.0
AWE67794.1\|1104691_1104922_-	hypothetical protein	R4IG40	Staphylococcus_phage	2.3e-35	100.0
AWE66232.1\|1104971_1105109_+	hypothetical protein	S4SX85	Staphylococcus_phage	3.2e-16	100.0
AWE66138.1\|1105101_1105263_+	hypothetical protein	Q4ZDA3	Staphylococcus_virus	5.0e-21	100.0
AWE66986.1\|1105354_1105615_+	hypothetical protein	Q4ZDA1	Staphylococcus_virus	1.2e-43	100.0
AWE67003.1\|1105624_1105846_+	hypothetical protein	A0A0E3TAJ7	Staphylococcus_phage	2.4e-34	100.0
AWE67693.1\|1105838_1106618_+	bacterial dnaA family protein	Q9G028	Staphylococcus_virus	2.5e-142	100.0
AWE65848.1\|1106647_1107202_+	putative single-strand DNA-binding protein	A7TWM8	Staphylococcus_phage	1.0e-100	100.0
AWE67416.1\|1107214_1107880_+	hypothetical protein	Q8SDW3	Staphylococcus_phage	1.1e-125	100.0
AWE66672.1\|1107879_1108659_+	AP2 domain protein	A0A2H4J5K3	uncultured_Caudovirales_phage	7.3e-49	46.1
AWE67355.1\|1108630_1109434_+	putative phage replisome organizer domain protein	A0A2H4JCF5	uncultured_Caudovirales_phage	2.5e-121	99.6
AWE66294.1\|1109443_1110217_+	istB-like ATP binding family protein	A0A2H4PQI3	Staphylococcus_phage	7.3e-142	98.1
AWE65870.1\|1110381_1110603_+	hypothetical protein	A7TWN4	Staphylococcus_phage	1.3e-35	100.0
AWE68117.1\|1110612_1111020_+	endodeoxyribonuclease RusA family protein	A9CR74	Staphylococcus_phage	3.2e-72	97.8
AWE65828.1\|1111019_1111205_+	hypothetical protein	Q4ZA46	Staphylococcus_virus	1.3e-25	95.1
AWE67824.1\|1111205_1111577_+	PVL ORF-50-like family protein	Q4ZAY2	Staphylococcus_virus	8.5e-56	98.4
AWE66364.1\|1111577_1111826_+	phage family protein	A4ZF93	Staphylococcus_virus	9.4e-43	100.0
AWE65668.1\|1111840_1112242_+	hypothetical protein	A0EWR3	Staphylococcus_virus	2.0e-71	100.0
AWE67125.1\|1112238_1112655_+	yopX family protein	A0A0D4DC71	Staphylococcus_phage	1.0e-17	60.3
AWE67611.1\|1112651_1113017_+	acetyltransferase family protein	A0A0F6N3K4	Staphylococcus_phage	2.4e-50	96.3
AWE66084.1\|1113009_1113258_+	hypothetical protein	A0A0E3T8I2	Staphylococcus_phage	6.5e-36	93.9
AWE67058.1\|1113250_1113760_+	dUTPase family protein	M9NS45	Staphylococcus_phage	1.6e-89	98.2
AWE68145.1\|1113796_1114084_+	hypothetical protein	Q4ZBK2	Staphylococcus_phage	4.3e-47	100.0
AWE67542.1\|1114076_1114463_+	hypothetical protein	Q4ZBK1	Staphylococcus_phage	3.0e-64	98.4
AWE66766.1\|1114459_1114633_+	transcriptional activator RinB family protein	Q4ZDF9	Staphylococcus_virus	6.4e-22	98.2
AWE66696.1\|1114633_1114780_+	hypothetical protein	B2ZYX7	Staphylococcus_phage	2.2e-15	100.0
AWE66912.1\|1114803_1115226_+	phage transcriptional regulator, RinA family protein	S4V7K2	Staphylococcus_phage	1.6e-74	100.0
AWE67383.1\|1115412_1115853_+\|terminase	terminase small subunit	I1W650	Staphylococcus_phage	4.8e-74	100.0
AWE66578.1\|1115839_1117117_+\|terminase	phage terminase, large subunit, PBSX family	S4V685	Staphylococcus_phage	1.3e-249	100.0
AWE68245.1\|1117127_1118663_+\|portal	phage portal protein, SPP1 family	Q4ZDN2	Staphylococcus_virus	4.5e-292	100.0
AWE65539.1\|1118669_1119665_+\|head	phage head morphogenesis, SPP1 gp7 family domain protein	E0Y3K7	Staphylococcus_virus	2.2e-183	99.7
AWE67741.1\|1119737_1119908_+	hypothetical protein	Q4ZDN0	Staphylococcus_virus	4.3e-23	100.0
AWE67364.1\|1120016_1120637_+	hypothetical protein	Q4ZDM9	Staphylococcus_virus	1.1e-63	100.0
AWE66271.1\|1120650_1121625_+\|capsid	phage major capsid protein, HK97 family	Q8SDU5	Staphylococcus_phage	1.3e-183	100.0
AWE66190.1\|1121646_1121934_+	hypothetical protein	S4V6D9	Staphylococcus_phage	4.7e-46	100.0
AWE66941.1\|1121942_1122275_+\|head,tail	phage gp6-like head-tail connector family protein	A0A0F6N3F4	Staphylococcus_phage	5.5e-54	100.0
AWE68128.1\|1122573_1122921_+	hypothetical protein	A0A0F6N3F5	Staphylococcus_phage	4.1e-60	100.0
AWE67770.1\|1122932_1123316_+	hypothetical protein	Q4ZDM4	Staphylococcus_virus	2.6e-68	100.0
AWE67789.1\|1123334_1123916_+\|tail	phage major tail protein, TP901-1 family	Q4ZDM3	Staphylococcus_virus	1.8e-105	100.0
AWE66090.1\|1123977_1124343_+	phage family protein	A0A0F6N4J9	Staphylococcus_phage	3.6e-59	100.0
AWE67338.1\|1124372_1124717_+	hypothetical protein	A0A0F6N3F7	Staphylococcus_phage	2.5e-57	100.0
AWE66332.1\|1124733_1128198_+	putative membrane protein	Q4ZDL9	Staphylococcus_virus	2.3e-267	100.0
AWE66629.1\|1128210_1129158_+\|tail	phage tail family protein	A0A0F6N3L4	Staphylococcus_phage	6.1e-183	99.7
AWE66409.1\|1129166_1131068_+\|tail	prophage endopeptidase tail family protein	Q8SDT5	Staphylococcus_phage	0.0e+00	100.0
AWE65905.1\|1131082_1132993_+	putative minor structural protein	Q4ZDL3	Staphylococcus_virus	0.0e+00	99.5
AWE66062.1\|1132992_1134816_+	hypothetical protein	A0A0E3XBS0	Staphylococcus_phage	3.4e-307	96.4
AWE67865.1\|1134815_1135193_+	hypothetical protein	A0A0F6N3G4	Staphylococcus_phage	1.5e-60	100.0
AWE66638.1\|1135196_1135370_+	hypothetical protein	A0A0F6N3L7	Staphylococcus_phage	6.6e-27	100.0
AWE66600.1\|1135409_1135709_+	hypothetical protein	A0A0H4ITZ0	Staphylococcus_phage	7.6e-47	100.0
AWE66464.1\|1135845_1137744_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	A0EX80	Staphylococcus_virus	0.0e+00	99.7
AWE66212.1\|1137756_1138995_+	collagen triple helix repeat family protein	A0A0F6N3G7	Staphylococcus_phage	1.6e-210	100.0
AWE66168.1\|1139000_1139396_+	hypothetical protein	A1KXB6	Staphylococcus_virus	1.6e-68	100.0
AWE67323.1\|1139451_1139727_+\|holin	holin, SPP1 family	A0A0F6N3M0	Staphylococcus_phage	8.6e-45	100.0
AWE68019.1\|1139863_1141126_+	CHAP domain protein	A0A0F6N3N1	Staphylococcus_phage	3.7e-252	99.8
AWE67852.1\|1141185_1141743_-	putative penicillin binding protein	A0A0F6N4L1	Staphylococcus_phage	7.4e-96	100.0
AWE67008.1\|1142452_1142638_+	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.7e-26	100.0

DBSCAN-SWA_6

1529866 : 1661831

189

Staphylococcus_phage(85.62%)

tail,capsid,portal,integrase,tRNA,holin,head,terminase

attL 1611118:1611177|attR 1656142:1656253

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE67205.1\|1529866_1531159_-\|tRNA	asparagine--tRNA ligase	M1PB22	Moumouvirus	8.7e-55	31.3
AWE67678.1\|1531480_1534174_-	hypothetical protein	A0A1X9I5C8	Streptococcus_phage	6.2e-47	34.4
AWE66440.1\|1534197_1535169_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
AWE66934.1\|1535155_1536358_-\|head	poly A polymerase head domain protein	H7BUW3	unidentified_phage	4.2e-35	43.3
AWE65607.1\|1536362_1537475_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA
AWE66755.1\|1537748_1538066_-	mazG nucleotide pyrophosphohydrolase domain protein	NA	NA	NA	NA
AWE66122.1\|1538401_1539100_-	neutral zinc metallopeptidase family protein	NA	NA	NA	NA
AWE65908.1\|1539153_1539741_-	hypothetical protein	NA	NA	NA	NA
AWE66339.1\|1539730_1540306_-	IDEAL domain protein	G3MAV7	Bacillus_virus	2.1e-08	27.2
AWE67990.1\|1540319_1541564_-	tetratricopeptide repeat family protein	NA	NA	NA	NA
AWE67816.1\|1541570_1542869_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
AWE67708.1\|1542878_1543943_-	3-dehydroquinate synthase	NA	NA	NA	NA
AWE66753.1\|1543968_1545135_-	chorismate synthase	A0A291AU41	Pandoravirus	5.8e-34	31.8
AWE67064.1\|1545520_1545721_-	putative membrane protein	NA	NA	NA	NA
AWE67390.1\|1545929_1546379_-	nucleoside diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.4e-28	43.8
AWE68265.1\|1546470_1547430_-	heptaprenyl diphosphate synthase component 2	A0A1V0SE37	Indivirus	1.3e-10	24.4
AWE66035.1\|1547431_1548157_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA
AWE67840.1\|1548159_1548732_-	heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 family protein	NA	NA	NA	NA
AWE67272.1\|1549162_1549435_-	DNA-binding protein HU	A7KV42	Bacillus_phage	4.2e-28	73.3
AWE66357.1\|1549605_1550604_-	ketopantoate reductase PanE/ApbA family protein	NA	NA	NA	NA
AWE66234.1\|1550620_1551931_-	ribosome-associated GTPase EngA	NA	NA	NA	NA
AWE66774.1\|1552152_1553328_-	30S ribosomal protein S1	NA	NA	NA	NA
AWE66518.1\|1554039_1554699_-	cytidylate kinase	NA	NA	NA	NA
AWE66831.1\|1554775_1555744_+	asparaginase family protein	NA	NA	NA	NA
AWE67221.1\|1555858_1556845_-	pyridine nucleotide-disulfide oxidoreductase family protein	NA	NA	NA	NA
AWE66948.1\|1557246_1558707_-	elastin-binding protein EbpS	NA	NA	NA	NA
AWE66674.1\|1558859_1560239_-	ATP-dependent DNA helicase, RecQ family protein	A0A2P1EM61	Moumouvirus	1.4e-55	33.6
AWE67878.1\|1560228_1561182_-	hypothetical protein	NA	NA	NA	NA
AWE65814.1\|1561289_1561538_+	ferredoxin	A0A127AYY7	Bacillus_phage	8.3e-15	48.0
AWE66077.1\|1561643_1562189_-	riboflavin transporter RibU	NA	NA	NA	NA
AWE67208.1\|1562590_1563547_-	hypothetical protein	NA	NA	NA	NA
AWE66510.1\|1563563_1563686_+	putative membrane protein	NA	NA	NA	NA
AWE68076.1\|1563687_1563942_-	hypothetical protein	NA	NA	NA	NA
AWE67928.1\|1564017_1564914_-	hypothetical protein	NA	NA	NA	NA
AWE65837.1\|1564971_1565877_-	hypothetical protein	NA	NA	NA	NA
AWE67213.1\|1565966_1566182_-	hypothetical protein	A0ZS61	Staphylococcus_virus	2.0e-25	100.0
AWE66699.1\|1566903_1568358_-	CHAP domain protein	A0A2I6PF47	Staphylococcus_phage	2.8e-288	99.4
AWE66137.1\|1568368_1568671_-\|holin	holin, SPP1 family	A0A2I6PF56	Staphylococcus_phage	3.1e-48	100.0
AWE66697.1\|1568806_1569106_-	hypothetical protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
AWE67192.1\|1569151_1569316_-	hypothetical protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
AWE68060.1\|1569308_1569698_-	hypothetical protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
AWE65918.1\|1569697_1571164_-	hypothetical protein	A0A2I6PDE3	Staphylococcus_phage	3.4e-273	99.6
AWE65862.1\|1571163_1573074_-	putative minor structural protein	A0A2I6PEQ9	Staphylococcus_phage	0.0e+00	100.0
AWE65642.1\|1573089_1573380_-	putative phage protein	U5U457	Staphylococcus_phage	2.1e-49	100.0
AWE67474.1\|1573379_1574963_-\|tail	prophage endopeptidase tail family protein	A0A2I6PEQ5	Staphylococcus_phage	9.3e-309	100.0
AWE66545.1\|1574971_1575796_-\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	4.1e-159	100.0
AWE67330.1\|1575795_1581972_-\|tail	phage tail tape measure protein, TP901 family, core region	A0A2I6PDS2	Staphylococcus_phage	0.0e+00	99.3
AWE67775.1\|1581985_1582144_-	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
AWE66829.1\|1582185_1582536_-	hypothetical protein	A0A2I6PDE6	Staphylococcus_phage	1.1e-55	100.0
AWE68002.1\|1582593_1583049_-	bacterial Ig-like domain family protein	A0A2I6PF45	Staphylococcus_phage	1.3e-77	100.0
AWE66363.1\|1583140_1583782_-\|tail	phage major tail, phi13 family protein	A0A2I6PEP6	Staphylococcus_phage	5.9e-121	100.0
AWE66061.1\|1583816_1584212_-	hypothetical protein	A0A2I6PDD8	Staphylococcus_phage	2.6e-66	100.0
AWE67431.1\|1584212_1584614_-	hypothetical protein	A0A2I6PDD3	Staphylococcus_phage	6.2e-68	100.0
AWE67534.1\|1584610_1584943_-	hypothetical protein	A0A2I6PDD6	Staphylococcus_phage	6.2e-58	100.0
AWE67776.1\|1584954_1585233_-\|head,tail	phage gp6-like head-tail connector family protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-46	100.0
AWE65561.1\|1585301_1586465_-\|capsid	phage major capsid protein, HK97 family	A0A2I6PDD7	Staphylococcus_phage	9.4e-218	100.0
AWE68070.1\|1586476_1587250_-	peptidase S49 family protein	M1TAZ4	Staphylococcus_phage	9.2e-137	100.0
AWE66402.1\|1587233_1588472_-\|portal	phage portal protein, HK97 family	A0A2I6PEA6	Staphylococcus_phage	2.6e-234	99.5
AWE67289.1\|1588476_1590168_-	phage Terminase family protein	A0A2K9VBQ1	Staphylococcus_phage	0.0e+00	100.0
AWE66683.1\|1590157_1590463_-\|terminase	phage terminase, small subunit	U5U414	Staphylococcus_phage	2.9e-49	100.0
AWE68102.1\|1590587_1590908_-	HNH endonuclease family protein	A0A2K9VBV6	Staphylococcus_phage	1.1e-56	99.1
AWE67328.1\|1591064_1591502_-	phage transcriptional regulator, RinA family protein	A0A2K9VBV2	Staphylococcus_phage	6.1e-77	100.0
AWE67484.1\|1591514_1592873_-	DEAD/DEAH box helicase family protein	A0A2I6PDQ0	Staphylococcus_phage	1.2e-259	98.9
AWE67120.1\|1592862_1593153_-	VRR-NUC domain protein	U5U7A3	Staphylococcus_phage	4.9e-51	100.0
AWE66985.1\|1593493_1594225_-	virulence-associated E family protein	A0A0K1LKN1	Staphylococcus_phage	1.3e-140	99.2
AWE66081.1\|1594302_1595940_-	virulence-associated E family protein	Q4ZCN2	Staphylococcus_virus	0.0e+00	98.7
AWE66507.1\|1595992_1596193_-	hypothetical protein	A0A2I6PF41	Staphylococcus_phage	2.9e-26	100.0
AWE66910.1\|1596260_1596413_-	transcriptional activator RinB family protein	Q9B0E9	Staphylococcus_virus	2.6e-19	100.0
AWE66549.1\|1596409_1596796_-	hypothetical protein	A0A1X9IGZ2	Staphylococcus_phage	3.0e-64	100.0
AWE65707.1\|1596792_1596999_-	hypothetical protein	A0A0H3U2R7	Staphylococcus_phage	6.4e-29	97.1
AWE68016.1\|1597035_1597566_-	dUTP diphosphatase family protein	C8CH05	Staphylococcus_phage	8.7e-94	99.4
AWE67736.1\|1597558_1597807_-	hypothetical protein	A0A0H4IP74	Staphylococcus_phage	1.2e-37	98.8
AWE67998.1\|1597799_1598108_-	hypothetical protein	Q6R826	Staphylococcus_virus	5.4e-48	96.0
AWE66022.1\|1598104_1598449_-	yopX family protein	D2JGL4	Staphylococcus_phage	1.7e-58	100.0
AWE67296.1\|1598448_1598850_-	hypothetical protein	A0EWR3	Staphylococcus_virus	5.4e-72	100.0
AWE66521.1\|1598864_1599107_-	phage family protein	A0A2I6PEV3	Staphylococcus_phage	1.5e-40	100.0
AWE66377.1\|1599121_1599322_-	hypothetical protein	A0A2I6PEM3	Staphylococcus_phage	2.5e-30	100.0
AWE66727.1\|1599324_1599582_-	hypothetical protein	A0A2I6PEN5	Staphylococcus_phage	7.5e-43	98.8
AWE67445.1\|1599581_1599983_-	PVL ORF-50-like family protein	A0A2I6PEL5	Staphylococcus_phage	1.2e-68	100.0
AWE66108.1\|1599982_1600168_-	hypothetical protein	A0A2I6PEM8	Staphylococcus_phage	7.0e-27	100.0
AWE68140.1\|1600180_1602142_-	DNA polymerase A family protein	Q4ZCP5	Staphylococcus_virus	0.0e+00	99.5
AWE67177.1\|1602200_1602758_-	hypothetical protein	A0A2K9VBT2	Staphylococcus_phage	1.8e-97	100.0
AWE66610.1\|1602783_1603950_-	PD-(D/E)XK nuclease superfamily protein	B5WZM3	Staphylococcus_phage	8.3e-222	100.0
AWE67386.1\|1603946_1604309_-	hypothetical protein	B5WZM2	Staphylococcus_phage	2.7e-54	98.3
AWE67984.1\|1604323_1604647_-	hypothetical protein	A0A2I6PE70	Staphylococcus_phage	6.5e-52	100.0
AWE67951.1\|1604899_1605163_-	homeo-like domain protein	A7TWG0	Staphylococcus_phage	6.3e-45	98.9
AWE66652.1\|1605187_1605403_-	hypothetical protein	A0A2I6PF01	Staphylococcus_phage	1.9e-31	100.0
AWE66338.1\|1605457_1605823_+	putative phage protein	A0A2I6PF07	Staphylococcus_phage	2.4e-63	100.0
AWE65730.1\|1606103_1606484_+	hypothetical protein	Q4ZCQ5	Staphylococcus_virus	5.8e-68	100.0
AWE67690.1\|1606470_1606668_-	hypothetical protein	A7TWF5	Staphylococcus_phage	4.6e-24	100.0
AWE67084.1\|1606737_1606950_+	putative uracil-DNA glycosylase	D2JGJ1	Staphylococcus_phage	7.6e-33	100.0
AWE67507.1\|1606990_1607140_-	hypothetical protein	D2JGJ0	Staphylococcus_phage	1.4e-20	100.0
AWE66308.1\|1607154_1607598_-	hypothetical protein	A7TWF2	Staphylococcus_phage	8.9e-76	100.0
AWE66016.1\|1607645_1607858_-	helix-turn-helix family protein	A7TWF1	Staphylococcus_phage	1.6e-30	100.0
AWE67622.1\|1608009_1608741_+	helix-turn-helix family protein	S4SVC5	Staphylococcus_phage	6.9e-134	100.0
AWE67660.1\|1608810_1608993_+	hypothetical protein	A0A2I6PDR4	Staphylococcus_phage	5.3e-27	100.0
AWE66762.1\|1609049_1609175_+	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	3.3e-12	100.0
AWE67664.1\|1609171_1609786_-	hypothetical protein	A0A2I6PEZ0	Staphylococcus_phage	6.7e-106	100.0
AWE65784.1\|1609911_1611117_+\|integrase	phage integrase family protein	A0A2I6PEN0	Staphylococcus_phage	7.7e-223	100.0
1611118:1611177	attL	NA	NA	NA	NA
AWE65994.1\|1611961_1612258_-	bacterial SH3 domain protein	A7TWL1	Staphylococcus_phage	5.0e-51	99.0
AWE66868.1\|1613425_1613728_-\|holin	holin, SPP1 family	A0A2I6PF56	Staphylococcus_phage	3.1e-48	100.0
AWE68226.1\|1613863_1614163_-	hypothetical protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
AWE68290.1\|1614208_1614373_-	hypothetical protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
AWE66002.1\|1614365_1614755_-	hypothetical protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
AWE67204.1\|1614754_1615612_-	hypothetical protein	A0A2I6PDE3	Staphylococcus_phage	2.3e-160	98.9
AWE68278.1\|1615710_1616220_-	hypothetical protein	A0A2I6PES7	Staphylococcus_phage	5.6e-82	100.0
AWE66013.1\|1616219_1618130_-	putative minor structural protein	A0A2I6PEQ9	Staphylococcus_phage	0.0e+00	100.0
AWE66914.1\|1618145_1618436_-	putative phage protein	U5U457	Staphylococcus_phage	2.1e-49	100.0
AWE65757.1\|1618435_1619143_-\|tail	prophage endopeptidase tail family protein	A0A2I6PEQ5	Staphylococcus_phage	3.8e-129	99.6
AWE66804.1\|1619139_1620018_-\|tail	prophage endopeptidase tail family protein	A0A2I6PEQ5	Staphylococcus_phage	7.0e-165	99.6
AWE66265.1\|1620026_1620146_-\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	5.2e-15	97.4
AWE66130.1\|1620280_1620541_-\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	8.9e-44	98.8
AWE66160.1\|1620537_1620849_-	hypothetical protein	A0A2I6PER3	Staphylococcus_phage	1.7e-41	100.0
AWE68110.1\|1620848_1621163_-\|tail	tail length tape measure domain protein	A0A2I6PDS2	Staphylococcus_phage	1.5e-48	100.0
AWE65605.1\|1621207_1621378_-	hypothetical protein	A0A2I6PDS2	Staphylococcus_phage	8.5e-11	88.6
AWE66843.1\|1621365_1622121_-	peptidase M23 family protein	A0A2I6PDS2	Staphylococcus_phage	1.7e-143	100.0
AWE67841.1\|1622275_1622683_-\|tail	tail length tape measure domain protein	U5U762	Staphylococcus_phage	1.7e-57	91.2
AWE66798.1\|1622688_1623012_-\|tail	putative tail length tape measure domain protein	NA	NA	NA	NA
AWE67705.1\|1623049_1623337_-\|tail	putative tail length tape measure domain protein	U5U762	Staphylococcus_phage	2.2e-27	98.3
AWE65885.1\|1623359_1623557_-	hypothetical protein	R4WAN6	Staphylococcus_phage	5.8e-11	57.8
AWE67096.1\|1623660_1623831_-\|tail	putative tail length tape measure domain protein	A0A2I6PER7	Staphylococcus_phage	6.3e-06	90.7
AWE66065.1\|1623836_1623971_-\|tail	putative tail length tape measure domain protein	NA	NA	NA	NA
AWE67923.1\|1624034_1624583_-\|tail	putative tail length tape measure domain protein	A0A2I6PF36	Staphylococcus_phage	2.5e-80	94.6
AWE66832.1\|1624747_1624882_+	hypothetical protein	NA	NA	NA	NA
AWE68264.1\|1625095_1625419_-\|tail	phage tail tape measure protein, TP901 family, core region	A0A2I6PER7	Staphylococcus_phage	2.1e-50	100.0
AWE66422.1\|1625406_1627011_-\|tail	phage tail tape measure protein, TP901 family, core region	A0A1X9IGU9	Staphylococcus_phage	7.0e-147	100.0
AWE66531.1\|1627044_1627182_-	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	5.4e-08	100.0
AWE67914.1\|1627223_1627574_-	hypothetical protein	A0A2I6PDE6	Staphylococcus_phage	1.1e-55	100.0
AWE68093.1\|1627631_1628087_-	bacterial Ig-like domain family protein	A0A2I6PF45	Staphylococcus_phage	1.3e-77	100.0
AWE66788.1\|1628178_1628820_-\|tail	phage major tail, phi13 family protein	A0A2I6PEP6	Staphylococcus_phage	5.9e-121	100.0
AWE67993.1\|1628854_1629250_-	hypothetical protein	A0A2I6PDD8	Staphylococcus_phage	2.6e-66	100.0
AWE65943.1\|1629250_1629652_-	hypothetical protein	A0A2I6PDD3	Staphylococcus_phage	6.2e-68	100.0
AWE66085.1\|1629648_1629981_-	hypothetical protein	A0A2I6PDD6	Staphylococcus_phage	6.2e-58	100.0
AWE66904.1\|1629992_1630271_-\|head,tail	phage gp6-like head-tail connector family protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-46	100.0
AWE67460.1\|1630339_1631431_-\|capsid	phage major capsid protein, HK97 family	A0A2I6PDD7	Staphylococcus_phage	9.5e-204	99.7
AWE67282.1\|1631427_1631547_-	hypothetical protein	A0A2I6PEQ3	Staphylococcus_phage	9.1e-12	97.2
AWE67283.1\|1631513_1632287_-	peptidase S49 family protein	M1TAZ4	Staphylococcus_phage	9.2e-137	100.0
AWE66936.1\|1632314_1632584_-\|portal	phage portal family protein	A0A2I6PER5	Staphylococcus_phage	8.4e-45	98.9
AWE66551.1\|1632610_1633507_-\|portal	phage portal protein, HK97 family	A0A2I6PEA6	Staphylococcus_phage	6.0e-164	99.3
AWE67237.1\|1633511_1634300_-	phage Terminase family protein	A0A2K9VBQ1	Staphylococcus_phage	1.2e-152	100.0
AWE67239.1\|1634449_1635202_-	phage Terminase family protein	A0A2K9VBQ1	Staphylococcus_phage	8.4e-143	100.0
AWE68131.1\|1635191_1635497_-\|terminase	phage terminase, small subunit	U5U414	Staphylococcus_phage	2.9e-49	100.0
AWE67767.1\|1635619_1635940_-	HNH endonuclease family protein	A0A2K9VBV6	Staphylococcus_phage	1.1e-56	99.1
AWE66183.1\|1636235_1636532_-	phage transcriptional regulator, RinA family protein	A0A2K9VBV2	Staphylococcus_phage	3.0e-43	92.1
AWE65816.1\|1636544_1637534_-	SNF2 family N-terminal domain protein	A0A2I6PDQ0	Staphylococcus_phage	5.8e-184	99.1
AWE66200.1\|1637524_1637902_-	DEAD/DEAH box helicase family protein	A0A2I6PDQ0	Staphylococcus_phage	3.6e-54	97.2
AWE67901.1\|1637891_1638182_-	VRR-NUC domain protein	U5U7A3	Staphylococcus_phage	4.9e-51	100.0
AWE68125.1\|1638522_1639056_-	virulence-associated E domain protein	A0A0K1LKN1	Staphylococcus_phage	1.1e-99	98.9
AWE67124.1\|1639088_1639466_-	virulence-associated E family protein	A0A2I6PEP4	Staphylococcus_phage	1.5e-39	92.0
AWE68137.1\|1639483_1639708_-	virulence-associated E domain protein	M1RZC5	Staphylococcus_phage	2.7e-28	100.0
AWE68234.1\|1639749_1640385_-	hypothetical protein	B5WZN5	Staphylococcus_phage	4.3e-116	97.6
AWE67681.1\|1640378_1640966_-	hypothetical protein	A0A2I6PEP4	Staphylococcus_phage	6.8e-108	100.0
AWE68171.1\|1641018_1641219_-	hypothetical protein	A0A2I6PF41	Staphylococcus_phage	2.9e-26	100.0
AWE67961.1\|1641286_1641400_-	transcriptional activator RinB family protein	B5WZN3	Staphylococcus_phage	7.1e-14	100.0
AWE65977.1\|1641434_1641821_-	hypothetical protein	A0A1X9IGZ2	Staphylococcus_phage	3.0e-64	100.0
AWE66170.1\|1641817_1642024_-	hypothetical protein	A0A0H3U2R7	Staphylococcus_phage	6.4e-29	97.1
AWE66563.1\|1642060_1642591_-	dUTP diphosphatase family protein	C8CH05	Staphylococcus_phage	8.7e-94	99.4
AWE65791.1\|1642583_1642832_-	hypothetical protein	A0A0H4IP74	Staphylococcus_phage	1.2e-37	98.8
AWE66489.1\|1642824_1643133_-	hypothetical protein	Q6R826	Staphylococcus_virus	5.4e-48	96.0
AWE67598.1\|1643129_1643474_-	yopX family protein	D2JGL4	Staphylococcus_phage	1.7e-58	100.0
AWE66290.1\|1643473_1643875_-	hypothetical protein	A0EWR3	Staphylococcus_virus	5.4e-72	100.0
AWE67232.1\|1643889_1644132_-	phage family protein	A0A2I6PEV3	Staphylococcus_phage	1.5e-40	100.0
AWE68187.1\|1644146_1644347_-	hypothetical protein	A0A2I6PEM3	Staphylococcus_phage	2.5e-30	100.0
AWE65900.1\|1644349_1644607_-	hypothetical protein	A0A2I6PEN5	Staphylococcus_phage	7.5e-43	98.8
AWE67579.1\|1644606_1645008_-	PVL ORF-50-like family protein	A0A2I6PEL5	Staphylococcus_phage	1.2e-68	100.0
AWE67649.1\|1645007_1645193_-	hypothetical protein	A0A2I6PEM8	Staphylococcus_phage	7.0e-27	100.0
AWE66519.1\|1645205_1647167_-	DNA polymerase A family protein	Q4ZCP5	Staphylococcus_virus	0.0e+00	99.5
AWE67959.1\|1647225_1647783_-	hypothetical protein	A0A2K9VBT2	Staphylococcus_phage	1.8e-97	100.0
AWE66663.1\|1647808_1648975_-	PD-(D/E)XK nuclease superfamily protein	B5WZM3	Staphylococcus_phage	8.3e-222	100.0
AWE68274.1\|1648971_1649334_-	hypothetical protein	B5WZM2	Staphylococcus_phage	2.7e-54	98.3
AWE67406.1\|1649348_1649672_-	hypothetical protein	A0A2I6PE70	Staphylococcus_phage	6.5e-52	100.0
AWE67723.1\|1649924_1650188_-	homeo-like domain protein	A7TWG0	Staphylococcus_phage	6.3e-45	98.9
AWE67050.1\|1650212_1650428_-	hypothetical protein	A0A2I6PF01	Staphylococcus_phage	1.9e-31	100.0
AWE65911.1\|1650482_1650848_+	putative phage protein	A0A2I6PF07	Staphylococcus_phage	2.4e-63	100.0
AWE65934.1\|1651127_1651508_+	hypothetical protein	Q4ZCQ5	Staphylococcus_virus	5.8e-68	100.0
AWE65766.1\|1651494_1651692_-	hypothetical protein	A7TWF5	Staphylococcus_phage	4.6e-24	100.0
AWE67260.1\|1651761_1651974_+	putative uracil-DNA glycosylase	D2JGJ1	Staphylococcus_phage	7.6e-33	100.0
AWE65859.1\|1652014_1652164_-	hypothetical protein	D2JGJ0	Staphylococcus_phage	1.4e-20	100.0
AWE67572.1\|1652178_1652622_-	hypothetical protein	A7TWF2	Staphylococcus_phage	8.9e-76	100.0
AWE67655.1\|1652669_1652882_-	helix-turn-helix family protein	A7TWF1	Staphylococcus_phage	1.6e-30	100.0
AWE66971.1\|1653033_1653765_+	helix-turn-helix family protein	S4SVC5	Staphylococcus_phage	6.9e-134	100.0
AWE67509.1\|1653834_1654017_+	hypothetical protein	A0A2I6PDR4	Staphylococcus_phage	5.3e-27	100.0
AWE67677.1\|1654073_1654199_+	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	3.3e-12	100.0
AWE66329.1\|1654195_1654810_-	hypothetical protein	A0A2I6PEZ0	Staphylococcus_phage	6.7e-106	100.0
AWE68037.1\|1654935_1656141_+\|integrase	phage integrase family protein	A0A2I6PEN0	Staphylococcus_phage	7.7e-223	100.0
AWE65759.1\|1656183_1658211_-	hypothetical protein	B5WZK7	Staphylococcus_phage	2.1e-116	100.0
1656142:1656253	attR	NA	NA	NA	NA
AWE67634.1\|1658203_1659070_-	hypothetical protein	NA	NA	NA	NA
AWE67420.1\|1659373_1661068_-	sensor protein SrrB	A0A1V0SGX0	Hokovirus	2.2e-21	33.2
AWE67499.1\|1661105_1661831_-	transcriptional regulatory protein SrrA	W8CYM9	Bacillus_phage	3.5e-45	43.0

DBSCAN-SWA_7

1795310 : 1804353

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE67059.1\|1795310_1795829_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
AWE67880.1\|1795850_1798124_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	8.1e-64	29.3
AWE66008.1\|1798326_1800606_-	protein-export membrane protein SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	5.3e-31	35.4
AWE67452.1\|1800880_1801141_-	preprotein translocase, YajC subunit	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AWE68146.1\|1801159_1802299_-\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AWE66709.1\|1802321_1803347_-\|tRNA	tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
AWE67103.1\|1803348_1804353_-	holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_8

1925094 : 1996706

Staphylococcus_phage(91.84%)

protease,transposase,tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE67184.1\|1925094_1925739_-\|tRNA	tRNA (guanine-N(7)-)-methyltransferase	NA	NA	NA	NA
AWE67197.1\|1925753_1926545_-\|holin	choline/ethanolamine kinase family protein	NA	NA	NA	NA
AWE67387.1\|1927094_1927943_-	D-amino-acid transaminase	NA	NA	NA	NA
AWE67218.1\|1927946_1929356_-	dipeptidase family protein	NA	NA	NA	NA
AWE67121.1\|1929913_1930336_-	hypothetical protein	NA	NA	NA	NA
AWE66499.1\|1930352_1931048_-	pseudouridine synthase family protein	NA	NA	NA	NA
AWE67181.1\|1931044_1932706_-	mviN-like family protein	NA	NA	NA	NA
AWE66779.1\|1933112_1934381_+	flavo, HI0933 family protein	A0A2H4PQX1	Staphylococcus_phage	9.1e-57	99.1
AWE67635.1\|1934497_1941058_-	sasC/Mrp/FmtB intercellular aggregation domain protein	A0A2H4PQU6	Staphylococcus_phage	6.1e-306	98.3
AWE66324.1\|1941383_1941695_-	rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	4.8e-52	99.0
AWE66203.1\|1941716_1944131_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.5
AWE66887.1\|1944421_1945603_-	sugar (and other) transporter family protein	A0A2H4PQR6	Staphylococcus_phage	7.3e-218	99.7
AWE66979.1\|1945712_1946666_+	radical SAM superfamily protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AWE68158.1\|1946662_1947226_+	methyltransferase domain protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AWE67750.1\|1947348_1947750_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA
AWE65985.1\|1947984_1948110_-	hypothetical protein	NA	NA	NA	NA
AWE67227.1\|1948321_1949149_-	alpha/beta hydrolase fold family protein	NA	NA	NA	NA
AWE65838.1\|1949381_1950383_+	proline dehydrogenase family protein	A0A2H4PQT6	Staphylococcus_phage	2.6e-184	99.4
AWE68168.1\|1950504_1950969_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-70	100.0
AWE66456.1\|1950981_1952163_-	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	5.6e-226	99.5
AWE67945.1\|1952173_1952806_-	riboflavin synthase, alpha subunit	A0A2H4PQS5	Staphylococcus_phage	5.5e-111	98.6
AWE67280.1\|1952812_1953856_-	riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	5.3e-196	98.8
AWE66150.1\|1954336_1955839_-	FAD-NAD(P)-binding family protein	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
AWE68260.1\|1956675_1957968_+	arsenite/antimonite efflux pump membrane family protein	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
AWE68109.1\|1958054_1958909_-	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AWE66260.1\|1959184_1959409_-	hypothetical protein	NA	NA	NA	NA
AWE67772.1\|1959607_1960078_+	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	8.8e-82	98.1
AWE67271.1\|1960328_1960634_+	comK family protein	NA	NA	NA	NA
AWE67424.1\|1960620_1961064_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
AWE67151.1\|1961359_1961995_+\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWE67936.1\|1962434_1963148_-	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AWE65851.1\|1963407_1963710_+	putative membrane protein	NA	NA	NA	NA
AWE67309.1\|1963965_1964331_+	crcB-like family protein	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AWE68104.1\|1964327_1964681_+	crcB-like family protein	A0A2H4PQQ7	Staphylococcus_phage	3.8e-21	94.0
AWE67396.1\|1965328_1965493_+\|transposase	putative transposase	A0A146ICT8	Staphylococcus_phage	2.9e-24	98.1
AWE65792.1\|1965931_1966615_+\|transposase	transposase DDE domain protein	A0ZS58	Staphylococcus_virus	1.2e-124	96.5
AWE65941.1\|1966677_1967511_-	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	7.8e-158	99.3
AWE67539.1\|1967722_1968631_-	nuclease-related domain protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
AWE65779.1\|1968752_1969949_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.3e-218	99.5
AWE67095.1\|1970320_1971913_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AWE66757.1\|1972290_1973061_-	alpha/beta hydrolase family protein	A0A2H4PQM6	Staphylococcus_phage	5.6e-142	98.4
AWE66375.1\|1973041_1973521_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	3.0e-85	99.4
AWE67700.1\|1973580_1973838_+	putative membrane protein insertion efficiency factor	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AWE67980.1\|1973834_1974836_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	5.3e-185	97.3
AWE67410.1\|1974840_1975632_-	O-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	3.7e-149	97.7
AWE67148.1\|1976477_1976960_-	hypothetical protein	A0A2H4PQN7	Staphylococcus_phage	3.8e-80	99.3
AWE65773.1\|1977271_1977886_+	excalibur calcium-binding domain protein	A0A2H4PQM8	Staphylococcus_phage	1.1e-42	93.1
AWE67178.1\|1977966_1978962_+	hypothetical protein	A0A2H4PQN2	Staphylococcus_phage	2.6e-67	97.9
AWE65674.1\|1979036_1979663_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.1e-74	79.8
AWE65868.1\|1979703_1980045_+	hypothetical protein	A0A2H4PQN6	Staphylococcus_phage	1.1e-54	94.7
AWE66516.1\|1980145_1980718_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	2.3e-23	93.1
AWE67360.1\|1980915_1981485_-	DDE domain protein	A0A2I7SC85	Paenibacillus_phage	1.3e-55	56.8
AWE67185.1\|1982515_1982926_-\|transposase	putative transposase	NA	NA	NA	NA
AWE67609.1\|1982939_1983071_+	hypothetical protein	NA	NA	NA	NA
AWE68107.1\|1983467_1984697_-	type I restriction modification DNA specificity domain protein	A0A2H4PQP5	Staphylococcus_phage	4.0e-134	64.7
AWE67365.1\|1984689_1986246_-	type I restriction-modification system, M subunit	A0A2H4PQP4	Staphylococcus_phage	1.6e-289	100.0
AWE67596.1\|1986606_1987326_-\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.9e-131	99.6
AWE66989.1\|1987483_1988203_-\|protease	serine protease SplF	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
AWE66070.1\|1988323_1989043_-\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.3e-129	98.7
AWE68040.1\|1989100_1989823_-\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	3.5e-130	98.3
AWE66722.1\|1989947_1990655_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	7.9e-127	97.0
AWE67037.1\|1991618_1992200_+	hypothetical protein	A0A2H4PQH6	Staphylococcus_phage	9.6e-54	64.8
AWE66595.1\|1992672_1992945_-	putative membrane protein	A0A2H4PQH0	Staphylococcus_phage	3.1e-31	83.5
AWE67199.1\|1993146_1993620_+	hypothetical protein	NA	NA	NA	NA
AWE67476.1\|1993624_1994416_+	hypothetical protein	NA	NA	NA	NA
AWE66797.1\|1994402_1994528_-	hypothetical protein	NA	NA	NA	NA
AWE67640.1\|1994785_1995769_-	leucotoxin LukDv	A0A2H4PQH7	Staphylococcus_phage	1.8e-185	99.4
AWE65662.1\|1995770_1996706_-	leucotoxin LukEv	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0

DBSCAN-SWA_9

2002907 : 2007154

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE66393.1\|2002907_2003663_-	enterotoxin H	A0A075M4C7	Staphylococcus_phage	6.0e-40	41.4
AWE66372.1\|2003701_2004097_-	enterotoxin type C-1	A0A097PAT7	Streptococcus_pyogenes_phage	1.5e-26	50.4
AWE67685.1\|2004071_2004419_-	enterotoxin type B	A0A097PAT7	Streptococcus_pyogenes_phage	3.0e-10	37.9
AWE67110.1\|2004626_2005355_-	toxin beta-grasp domain protein	A0A1X9H080	Staphylococcus_phage	1.1e-27	39.2
AWE67963.1\|2005389_2006109_-	toxin beta-grasp domain protein	A0A1X9H080	Staphylococcus_phage	2.3e-25	35.8
AWE67536.1\|2006389_2007154_-	enterotoxin type D	A0A1X9H080	Staphylococcus_phage	2.3e-31	37.1

DBSCAN-SWA_10

2130556 : 2176499

Staphylococcus_phage(95.65%)

tail,protease,capsid,portal,integrase,holin,head

attL 2149986:2150003|attR 2174483:2174500

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE67350.1\|2130556_2130757_+	phospholipase C domain protein	A0A1P8L6A7	Staphylococcus_phage	3.4e-27	100.0
AWE67087.1\|2131387_2131543_-	hypothetical protein	A0A1P8L6A1	Staphylococcus_phage	1.4e-20	100.0
AWE67494.1\|2131687_2131879_+	putative membrane protein	M9NS66	Staphylococcus_phage	1.7e-23	100.0
AWE65797.1\|2131931_2132282_-	complement inhibitor	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
AWE66399.1\|2132966_2133416_+	chemotaxis inhibitory protein	A0A1P8L6A8	Staphylococcus_phage	1.1e-78	100.0
AWE66710.1\|2133510_2133807_-	bacterial SH3 domain protein	A0A1P8L6B4	Staphylococcus_phage	1.3e-51	100.0
AWE66053.1\|2134494_2134986_-	staphylokinase	A0A1X9H028	Staphylococcus_phage	9.5e-87	100.0
AWE65691.1\|2135176_2135932_-	CHAP domain protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
AWE67082.1\|2135943_2136198_-\|holin	holin, phage phi LC3 family	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AWE67238.1\|2136409_2136544_-	putative membrane protein	D2JLG3	Staphylococcus_phage	9.3e-13	100.0
AWE68028.1\|2136735_2136966_-	hypothetical protein	D2JLG2	Staphylococcus_phage	1.2e-31	100.0
AWE65833.1\|2137089_2137377_-	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
AWE66177.1\|2137423_2137576_-	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
AWE67160.1\|2137565_2141351_-	phage minor structural, N-terminal region domain protein	Q6R866	Staphylococcus_virus	0.0e+00	98.3
AWE68200.1\|2141366_2142851_-\|tail	phage tail family protein	A0A2I6PDJ0	Staphylococcus_phage	4.5e-297	99.8
AWE67601.1\|2142847_2147380_-\|tail	phage tail tape measure protein, TP901 family, core region	A0EX03	Staphylococcus_phage	0.0e+00	98.9
AWE67092.1\|2147436_2147574_-	hypothetical protein	A0A2I6PDX7	Staphylococcus_phage	3.4e-18	100.0
AWE66705.1\|2147624_2147975_-	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
AWE66411.1\|2148024_2148165_-	bacterial Ig-like domain family protein	A0A2I6PDK6	Staphylococcus_phage	2.5e-16	100.0
AWE68197.1\|2148290_2148935_-\|tail	phage major tail, phi13 family protein	G4KNQ7	Staphylococcus_phage	1.9e-119	99.1
AWE67198.1\|2148935_2149343_-	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
AWE67638.1\|2149339_2149744_-	hypothetical protein	A0A1W6JPJ1	Staphylococcus_phage	2.5e-69	100.0
AWE66340.1\|2149740_2150103_-\|head,tail	phage head-tail joining family protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
2149986:2150003	attL	NA	NA	NA	NA
AWE66307.1\|2150086_2150371_-\|head,tail	phage gp6-like head-tail connector family protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
AWE66194.1\|2150360_2150645_-	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	5.2e-45	97.9
AWE66582.1\|2150664_2151810_-\|capsid	phage major capsid protein, HK97 family	A0A1W6JPL4	Staphylococcus_phage	6.2e-214	99.5
AWE65965.1\|2151832_2152570_-\|protease	clp protease family protein	A0A1W6JPK0	Staphylococcus_phage	1.8e-129	100.0
AWE68254.1\|2152553_2153717_-\|portal	phage portal protein, HK97 family	A0A1W6JPQ9	Staphylococcus_phage	1.8e-216	100.0
AWE67194.1\|2153732_2155394_-	phage Terminase family protein	A0A075M4D3	Staphylococcus_phage	0.0e+00	100.0
AWE67673.1\|2155390_2155735_-	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
AWE66580.1\|2155865_2156165_-	HNH endonuclease family protein	A0A2I6PDH9	Staphylococcus_phage	3.5e-52	100.0
AWE67421.1\|2156396_2156813_-	phage transcriptional regulator, RinA family protein	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
AWE66589.1\|2156840_2157041_-	hypothetical protein	D2JLD9	Staphylococcus_phage	5.3e-28	98.5
AWE67264.1\|2157040_2157190_-	transcriptional activator RinB family protein	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
AWE66668.1\|2157186_2157393_-	hypothetical protein	A0A2I6PEA2	Staphylococcus_phage	1.1e-17	94.1
AWE67101.1\|2157389_2157635_-	putative membrane protein	A0A2I6PDW7	Staphylococcus_phage	2.5e-35	98.8
AWE66140.1\|2157671_2158208_-	dUTPase family protein	Q9MBR0	Staphylococcus_prophage	1.6e-95	100.0
AWE68238.1\|2158204_2158450_-	hypothetical protein	Q8SDV5	Staphylococcus_phage	1.7e-36	95.1
AWE66046.1\|2158464_2158707_-	phage family protein	A0A2H4PQJ3	Staphylococcus_phage	1.2e-39	98.8
AWE67032.1\|2158709_2158967_-	hypothetical protein	A0A1X9H067	Staphylococcus_phage	6.3e-42	98.8
AWE67454.1\|2158966_2159338_-	PVL ORF-50-like family protein	A0A2I6PDG3	Staphylococcus_phage	1.4e-50	91.1
AWE68210.1\|2159350_2159755_-	endodeoxyribonuclease RusA family protein	A0A075M042	Staphylococcus_phage	8.4e-73	100.0
AWE67063.1\|2159763_2159982_-	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
AWE68292.1\|2159988_2160882_-	dnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	3.2e-141	100.0
AWE65562.1\|2160911_2161382_-	single-stranded DNA-binding family protein	A0A1P8L6D9	Staphylococcus_phage	5.7e-81	100.0
AWE66191.1\|2161382_2161868_-	beta-lactamase superfamily domain protein	A0A1P8L6F7	Staphylococcus_phage	9.4e-87	100.0
AWE66849.1\|2162080_2163001_-	recT family protein	A0A1P8L6F6	Staphylococcus_phage	5.1e-166	100.0
AWE67123.1\|2163002_2164946_-	hypothetical protein	A0A1P8L6F1	Staphylococcus_phage	0.0e+00	100.0
AWE66187.1\|2165226_2165487_-	hypothetical protein	A0A1P8L6F5	Staphylococcus_phage	5.2e-44	100.0
AWE67528.1\|2165491_2165794_-	hypothetical protein	A0A1P8L6F8	Staphylococcus_phage	7.0e-48	100.0
AWE67899.1\|2165888_2166050_-	hypothetical protein	A0A1P8L6G0	Staphylococcus_phage	1.9e-20	100.0
AWE67946.1\|2166046_2166370_-	hypothetical protein	A0A075LYF5	Staphylococcus_phage	3.0e-57	100.0
AWE67755.1\|2166424_2166805_+	hypothetical protein	Q9T1Z5	Staphylococcus_phage	1.2e-68	100.0
AWE67472.1\|2166791_2166989_-	putative phi PVL orf 35-like protein	O80075	Staphylococcus_phage	3.5e-24	87.7
AWE67935.1\|2167004_2167754_-	phage antirepressor KilAC domain protein	B7T097	Staphylococcus_virus	3.4e-136	99.6
AWE66943.1\|2167810_2168020_+	hypothetical protein	A0A2I6PDR8	Staphylococcus_phage	9.1e-31	100.0
AWE67793.1\|2168012_2168153_-	hypothetical protein	A0A2I6PDT8	Staphylococcus_phage	1.9e-16	100.0
AWE67967.1\|2168167_2168611_-	hypothetical protein	W5R971	Staphylococcus_phage	1.5e-75	100.0
AWE67782.1\|2168623_2168866_-	cro/C1-type HTH DNA-binding domain protein	A0A1X9H035	Staphylococcus_phage	1.6e-39	100.0
AWE65912.1\|2169029_2169746_+	helix-turn-helix domain protein	A0A1X9H038	Staphylococcus_phage	5.4e-131	100.0
AWE67548.1\|2169757_2170612_+	HIRAN domain protein	A0A1X9H037	Staphylococcus_phage	7.3e-151	100.0
AWE66815.1\|2170685_2170832_+	hypothetical protein	A0A1X9H032	Staphylococcus_phage	3.3e-19	100.0
AWE67706.1\|2170828_2171014_+	hypothetical protein	U5U7D6	Staphylococcus_phage	2.3e-25	100.0
AWE68073.1\|2171084_2171267_+	hypothetical protein	A0A0H3U4Z4	Staphylococcus_phage	6.9e-27	96.7
AWE67525.1\|2171345_2172059_+	pemK-like family protein	A0A1X9H026	Staphylococcus_phage	5.0e-129	100.0
AWE65999.1\|2172249_2173287_+\|integrase	integrase	Q38086	Staphylococcus_phage	2.2e-178	99.7
AWE66792.1\|2173343_2174168_+	sphingomyelin phosphodiesterase	A0A1P8L6H7	Staphylococcus_phage	8.9e-162	99.6
AWE67595.1\|2174405_2175422_-	gamma-hemolysin component B	A0A1X9IGW5	Staphylococcus_phage	6.7e-26	30.2
2174483:2174500	attR	NA	NA	NA	NA
AWE67356.1\|2175443_2176499_-	hypothetical protein	A0A1X9IGW5	Staphylococcus_phage	2.8e-35	34.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029087

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection