CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP028929	Klebsiella pneumoniae strain AR_0153 plasmid unnamed1, complete sequence	0 crisprs	DinG,RT,c2c9_V-U4	15
CP028932	Klebsiella pneumoniae strain AR_0153 chromosome, complete genome	0 crisprs	cas3,RT,DEDDh,csa3,TnsE_C,WYL,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	8
CP028931	Klebsiella pneumoniae strain AR_0153 plasmid unnamed3, complete sequence	0 crisprs	RT	1
CP028930	Klebsiella pneumoniae strain AR_0153 plasmid unnamed2, complete sequence	0 crisprs	RT	5

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 9530

Pseudomonas_phage(40.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB99955.1\|1035_1284_+	hypothetical protein	NA	NA	NA	NA
AWB99956.1\|1311_1629_+	DUF3846 domain-containing protein	A0A2H4P7A4	Pseudomonas_phage	6.0e-10	46.5
AWB99957.1\|2070_2364_-	hypothetical protein	NA	NA	NA	NA
AWB99958.1\|2424_3087_-	hypothetical protein	NA	NA	NA	NA
AWB99959.1\|3241_3550_-	hypothetical protein	NA	NA	NA	NA
AWC00231.1\|3844_4279_-	hypothetical protein	NA	NA	NA	NA
AWB99960.1\|4507_5128_-	Eac protein	A0A075B8I7	Enterobacteria_phage	4.8e-51	47.0
AWB99961.1\|5194_5413_-	hypothetical protein	NA	NA	NA	NA
AWB99962.1\|5448_5721_-	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	6.1e-11	46.4
AWB99963.1\|5998_6310_+	plasmid maintenance system killer family protein	NA	NA	NA	NA
AWB99964.1\|6321_6639_+	hypothetical protein	NA	NA	NA	NA
AWB99965.1\|6668_7058_+	hypothetical protein	NA	NA	NA	NA
AWC00232.1\|7434_7947_+	hypothetical protein	K7PM35	Enterobacteria_phage	8.3e-09	34.7
AWB99966.1\|8285_9530_+	site-specific DNA-methyltransferase	A0A1U9WRT4	Mycobacterium_phage	2.9e-07	25.3

DBSCAN-SWA_2

13662 : 16516

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB99969.1\|13662_14454_+	NgrC	A0A219UQS0	Bacillus_phage	1.4e-10	32.5
AWC00233.1\|15427_16516_+	replication initiation protein	J9Q7H0	Salmonella_phage	4.4e-60	41.4

DBSCAN-SWA_3

23221 : 54400

Escherichia_phage(37.5%)

integrase,transposase,tail

attL 29664:29723|attR 41017:41837

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB99977.1\|23221_23542_+	hypothetical protein	J9Q750	Salmonella_phage	2.2e-28	50.9
AWB99978.1\|23622_23937_+	hypothetical protein	NA	NA	NA	NA
AWC00234.1\|24057_24309_+	hypothetical protein	S5MQM0	Escherichia_phage	1.9e-22	76.7
AWB99979.1\|24474_24693_+	hypothetical protein	R9TRD3	Aeromonas_phage	4.4e-20	66.7
AWB99980.1\|24786_25284_+	hypothetical protein	A0A076G835	Escherichia_phage	1.5e-23	57.0
AWB99981.1\|25280_25469_+	hypothetical protein	NA	NA	NA	NA
AWB99982.1\|25946_26174_+	hypothetical protein	A9YWV3	Burkholderia_phage	1.5e-10	49.4
AWB99983.1\|26170_26815_+	hypothetical protein	A0A0U4JEF1	Pseudomonas_phage	2.2e-06	40.7
AWB99984.1\|26815_27139_+	hypothetical protein	E5AGF3	Erwinia_phage	1.6e-13	46.9
AWB99985.1\|27231_27618_+	hypothetical protein	H6WRY2	Salmonella_phage	3.7e-17	85.1
AWC00235.1\|28869_29352_+	hypothetical protein	A0A077SLK5	Escherichia_phage	4.4e-12	58.3
29664:29723	attL	NA	NA	NA	NA
AWB99986.1\|29715_30420_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWB99987.1\|30712_31027_-\|transposase	transposase	NA	NA	NA	NA
AWB99988.1\|30965_31979_-\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AWB99989.1\|32125_32608_+	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	6.6e-16	28.9
AWB99990.1\|32828_33095_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
AWB99991.1\|33237_34002_+\|transposase	IS6 family transposase IS6100	A0A077SL39	Escherichia_phage	4.3e-86	65.7
AWB99992.1\|34043_34256_+	resolvase	NA	NA	NA	NA
AWB99993.1\|34268_35477_+	restriction endonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
AWB99994.1\|35510_36944_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	50.6
AWB99995.1\|37325_37532_-	hypothetical protein	NA	NA	NA	NA
AWB99996.1\|37536_38049_-	restriction endonuclease	NA	NA	NA	NA
AWB99997.1\|38073_38778_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWC00236.1\|39409_40240_-	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
AWC00237.1\|40370_40925_-	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
AWB99998.1\|41068_41773_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWB99999.1\|42651_45669_+\|transposase	Tn3-like element IS3000 family transposase	A0A125RQ78	Bacillus_phage	5.5e-52	24.7
41017:41837	attR	NA	NA	NA	NA
AWC00001.1\|46241_46886_+	quinolone resistance pentapeptide repeat protein QnrB1	NA	NA	NA	NA
AWC00002.1\|47758_48463_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWC00003.1\|48908_49094_+	hypothetical protein	NA	NA	NA	NA
AWC00004.1\|49363_49636_+	hypothetical protein	I7B2L9	Escherichia_phage	2.5e-12	50.0
AWC00005.1\|50209_50395_+	hypothetical protein	A0A1V0E5M0	Salmonella_phage	2.1e-10	67.4
AWC00006.1\|50404_50854_+\|tail	phage tail protein	A0A1I9KFG8	Aeromonas_phage	2.9e-18	45.2
AWC00007.1\|50923_51532_+	hypothetical protein	K4JV11	Caulobacter_phage	2.6e-25	41.0
AWC00008.1\|51819_52275_+	hypothetical protein	NA	NA	NA	NA
AWC00009.1\|53158_54400_+	hypothetical protein	A0A2P9HXK7	Yersinia_phage	6.7e-12	28.9

DBSCAN-SWA_4

58563 : 60438

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00018.1\|58563_60438_+	helicase	A0A127AW80	Bacillus_phage	5.2e-08	27.1

DBSCAN-SWA_5

63700 : 66964

Pseudomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00022.1\|63700_65185_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
AWC00023.1\|65100_65280_+	hypothetical protein	NA	NA	NA	NA
AWC00024.1\|65270_65693_+	peptidase	A0A1W6JNS2	Morganella_phage	6.3e-31	49.3
AWC00025.1\|65692_66964_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	3.9e-140	58.3

DBSCAN-SWA_6

74901 : 76814

Clostridioides_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00035.1\|74901_75675_-	NERD domain-containing protein	A0A2R2ZH57	Clostridioides_phage	3.0e-10	48.0
AWC00036.1\|75677_76814_-	S49 family peptidase	G0YPK2	Erwinia_phage	5.7e-10	32.2

DBSCAN-SWA_7

85688 : 86393

Escherichia_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00043.1\|85688_86393_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6

DBSCAN-SWA_8

94061 : 97327

Salmonella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00047.1\|94061_94622_-	DNA resolvase	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
AWC00048.1\|94747_94960_-	DUF3330 domain-containing protein	NA	NA	NA	NA
AWC00241.1\|94922_95042_+	mercury resistance protein	NA	NA	NA	NA
AWC00049.1\|95025_95262_-	mercury resistance protein	NA	NA	NA	NA
AWC00050.1\|95258_95624_-	transcriptional regulator	NA	NA	NA	NA
AWC00051.1\|95641_97327_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	4.6e-40	29.1

DBSCAN-SWA_9

111238 : 111880

Streptomyces_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00071.1\|111238_111880_-	TerD family protein	A0A2P1N0C0	Streptomyces_phage	2.4e-05	25.1

DBSCAN-SWA_10

115672 : 125923

Caulobacter_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00076.1\|115672_116752_-	hypothetical protein	A0A172Q0S8	Acinetobacter_phage	3.3e-39	33.5
AWC00077.1\|116753_117527_-	hypothetical protein	NA	NA	NA	NA
AWC00078.1\|117519_118662_-	adenine/guanine phosphoribosyltransferase	A0A172Q0Y1	Acinetobacter_phage	6.3e-33	28.2
AWC00079.1\|118673_119732_-	carbamoyl-phosphate synthase large chain	NA	NA	NA	NA
AWC00080.1\|120043_120628_+	tellurium resistance protein TerZ	K4JRX3	Caulobacter_phage	1.8e-12	29.9
AWC00081.1\|120624_121776_+	tellurium resistance protein TerA	NA	NA	NA	NA
AWC00082.1\|121798_122254_+	Tellurium resistance protein TerB	NA	NA	NA	NA
AWC00083.1\|122277_123318_+	tellurium resistance protein TerC	K7QKE8	Escherichia_phage	1.8e-71	46.5
AWC00084.1\|123356_123935_+	TerD family protein	K4JRX3	Caulobacter_phage	5.5e-33	40.3
AWC00085.1\|124021_124597_+	TerD family protein	K4JRX3	Caulobacter_phage	9.6e-30	42.6
AWC00086.1\|124681_125923_+	tellurium resistance protein TerF	A0A2D1GNA9	Pseudoalteromonas_phage	4.8e-10	25.1

DBSCAN-SWA_11

132978 : 133473

Moraxella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00093.1\|132978_133473_+	nuclease	A0A0R6PHV6	Moraxella_phage	6.1e-17	34.2

DBSCAN-SWA_12

157732 : 239926

Salmonella_phage(12.0%)

integrase,transposase

attL 178210:178224|attR 230939:230953

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00115.1\|157732_158437_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AWC00116.1\|158813_159038_-	hypothetical protein	NA	NA	NA	NA
AWC00117.1\|159189_159837_+	recombinase family protein	A0A0A8WIK3	Clostridium_phage	2.6e-15	31.4
AWC00118.1\|160451_161477_-\|transposase	IS30-like element ISAba125 family transposase	W5R8L2	Staphylococcus_phage	1.2e-51	38.1
AWC00119.1\|161769_162054_+	hypothetical protein	NA	NA	NA	NA
AWC00120.1\|162109_162304_+	hypothetical protein	NA	NA	NA	NA
AWC00121.1\|162264_163794_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AWC00122.1\|163982_165623_-	chaperonin GroEL	A0A219YK78	uncultured_virus	8.2e-175	62.1
AWC00123.1\|165678_165969_-	co-chaperone GroES	A0A221S322	uncultured_virus	2.1e-17	47.8
AWC00124.1\|166162_166492_+	divalent-cation tolerance protein CutA	NA	NA	NA	NA
AWC00125.1\|166496_167528_+	twin-arginine translocation (TAT) pathway signal sequence domain protein	NA	NA	NA	NA
AWC00126.1\|167538_168177_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
AWC00127.1\|168181_168547_-	bleomycin binding protein Ble-MBL	NA	NA	NA	NA
AWC00128.1\|168550_169363_-	subclass B1 metallo-beta-lactamase NDM-1	NA	NA	NA	NA
AWC00129.1\|169577_170609_-\|transposase	IS630 family transposase ISEc33	NA	NA	NA	NA
AWC00130.1\|170705_171644_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	4.4e-48	37.4
AWC00131.1\|171795_172575_-	APH(3')-VI family aminoglycoside O-phosphotransferase	E4ZFP6	Streptococcus_phage	6.9e-31	34.7
AWC00132.1\|173109_173814_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AWC00133.1\|174698_175241_+	DNA-binding protein	NA	NA	NA	NA
AWC00134.1\|175576_176209_+	hypothetical protein	NA	NA	NA	NA
AWC00135.1\|176237_177641_-\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
AWC00136.1\|177882_178767_-	Mph(E) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
178210:178224	attL	NA	NA	NA	NA
AWC00137.1\|178822_180298_-	ABC-F type ribosomal protection protein Msr(E)	A0A1B0RXA0	Streptococcus_phage	2.3e-160	59.0
AWC00138.1\|180696_181881_-\|transposase	IS4 family transposase ISEc29	A0A0F7LAS3	uncultured_marine_virus	4.5e-50	35.4
AWC00139.1\|181929_182115_+	hypothetical protein	NA	NA	NA	NA
AWC00140.1\|182334_182616_+	hypothetical protein	NA	NA	NA	NA
AWC00245.1\|182596_183370_-	ArmA family 16S rRNA (guanine(1405)-N(7))-methyltransferase	NA	NA	NA	NA
AWC00141.1\|183695_184532_-\|transposase	IS5/IS1182 family transposase	A0A1V0E8E1	Vibrio_phage	3.9e-88	58.5
AWC00142.1\|184768_186310_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AWC00143.1\|186714_187554_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AWC00144.1\|187547_187895_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AWC00145.1\|188058_188850_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
AWC00146.1\|189257_189755_-	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
AWC00147.1\|189899_190913_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AWC00148.1\|191234_191792_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
AWC00149.1\|191794_194767_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
AWC00150.1\|194845_195850_+\|transposase	IS110 family transposase IS4321	NA	NA	NA	NA
AWC00151.1\|196765_197650_+	replication initiation protein	J9Q7H0	Salmonella_phage	2.6e-50	43.2
AWC00152.1\|199049_200117_-	hypothetical protein	NA	NA	NA	NA
AWC00153.1\|200202_200457_-	hypothetical protein	NA	NA	NA	NA
AWC00154.1\|200722_200974_+	hypothetical protein	NA	NA	NA	NA
AWC00155.1\|200973_202458_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
AWC00156.1\|202543_203680_+	recombinase	NA	NA	NA	NA
AWC00157.1\|203745_204063_-	hypothetical protein	NA	NA	NA	NA
AWC00158.1\|204214_204538_-	hypothetical protein	NA	NA	NA	NA
AWC00159.1\|204534_205293_-	hypothetical protein	NA	NA	NA	NA
AWC00160.1\|205289_206249_-	DNA replication terminus site-binding protein	NA	NA	NA	NA
AWC00161.1\|206291_206699_-	hypothetical protein	NA	NA	NA	NA
AWC00162.1\|206708_207173_-	hypothetical protein	NA	NA	NA	NA
AWC00163.1\|207220_207463_-	hypothetical protein	NA	NA	NA	NA
AWC00164.1\|208414_208954_-	hypothetical protein	NA	NA	NA	NA
AWC00165.1\|209022_210267_-	topoisomerase	A0A0H5AWB1	Pseudomonas_phage	1.8e-09	25.5
AWC00166.1\|210377_210608_-	hypothetical protein	NA	NA	NA	NA
AWC00246.1\|210679_211456_-	VWA domain-containing protein	NA	NA	NA	NA
AWC00167.1\|212779_213856_-	DUF3150 domain-containing protein	NA	NA	NA	NA
AWC00168.1\|213950_215003_-	ATP-binding protein	NA	NA	NA	NA
AWC00169.1\|215030_215852_-	hypothetical protein	NA	NA	NA	NA
AWC00170.1\|215913_216267_-	hypothetical protein	NA	NA	NA	NA
AWC00171.1\|216411_217398_-	hypothetical protein	NA	NA	NA	NA
AWC00172.1\|217731_219531_-	ATP-dependent helicase	E3T5J8	Cafeteria_roenbergensis_virus	2.4e-26	25.8
AWC00173.1\|219821_220070_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
AWC00174.1\|220059_220344_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	3.6e-22	59.1
AWC00175.1\|220497_221724_+\|transposase	transposase	O80301	Enterobacteria_phage	1.2e-154	78.7
AWC00176.1\|222298_222721_-\|transposase	IS200/IS605 family transposase	I4AZM1	Saccharomonospora_phage	3.0e-33	53.1
AWC00177.1\|222762_223950_+\|transposase	transposase	O80301	Enterobacteria_phage	1.3e-142	78.3
AWC00178.1\|225649_226498_+	hypothetical protein	NA	NA	NA	NA
AWC00179.1\|226546_229732_-	conjugal transfer protein TraN	NA	NA	NA	NA
AWC00180.1\|229741_230779_-	plasmid transfer protein	NA	NA	NA	NA
AWC00181.1\|230775_232137_-	conjugal transfer protein	NA	NA	NA	NA
230939:230953	attR	NA	NA	NA	NA
AWC00182.1\|232123_232648_-	signal peptidase I	NA	NA	NA	NA
AWC00183.1\|232785_237027_-	hypothetical protein	NA	NA	NA	NA
AWC00184.1\|237154_237691_-	plasmid transfer protein	NA	NA	NA	NA
AWC00185.1\|237678_238083_-	hypothetical protein	NA	NA	NA	NA
AWC00186.1\|238057_238516_-	HtdA	NA	NA	NA	NA
AWC00187.1\|238806_239926_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8

DBSCAN-SWA_13

255223 : 256402

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00205.1\|255223_256402_+	DNA-binding protein	A0A1P8DTT7	Salmonella_phage	9.1e-19	33.0

DBSCAN-SWA_14

263051 : 264299

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00212.1\|263051_264299_+	ParA family protein	Q1MVJ3	Enterobacteria_phage	1.4e-12	23.0

DBSCAN-SWA_15

276637 : 282537

Edwardsiella_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00221.1\|276637_277216_+	HNH endonuclease	W0LI46	Edwardsiella_phage	1.2e-40	57.6
AWC00222.1\|277206_277521_-	hypothetical protein	NA	NA	NA	NA
AWC00248.1\|277645_278056_+	DNA-binding protein	Q71TH9	Escherichia_phage	4.6e-42	60.8
AWC00223.1\|278240_278600_-	hypothetical protein	NA	NA	NA	NA
AWC00224.1\|278830_279274_+	hypothetical protein	NA	NA	NA	NA
AWC00225.1\|279315_279519_+	hypothetical protein	NA	NA	NA	NA
AWC00226.1\|279527_279788_+	hypothetical protein	A0A0M3LSW2	Mannheimia_phage	5.9e-11	41.0
AWC00227.1\|279820_280255_+	hypothetical protein	NA	NA	NA	NA
AWC00228.1\|280251_280995_+	DNA replication protein DnaC	V5UQI5	Shigella_phage	1.8e-60	49.6
AWC00229.1\|281121_282537_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.1e-106	50.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP028932

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

439378 : 450265

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00861.1\|439378_442486_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
AWC00862.1\|442540_443806_+	MFS transporter	NA	NA	NA	NA
AWC00863.1\|443836_444925_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	3.0e-210	99.7
AWC00864.1\|445011_445272_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
AWC00865.1\|445569_446430_+	class A beta-lactamase SHV-28	A0A077SL40	Escherichia_phage	1.7e-155	99.3
AWC00866.1\|446450_447212_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AWC00867.1\|447472_448375_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
AWC00868.1\|448386_449652_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.1e-232	99.3
AWC00869.1\|449644_450265_+	aldolase	A0A077SK32	Escherichia_phage	1.8e-114	99.5

DBSCAN-SWA_2

616620 : 674501

Escherichia_phage(37.5%)

transposase,plate,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC01020.1\|616620_617556_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	3.5e-138	93.0
AWC01021.1\|617601_618975_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	8.6e-53	32.3
AWC01022.1\|618989_619184_-	hypothetical protein	NA	NA	NA	NA
AWC01023.1\|619162_619396_-	hypothetical protein	NA	NA	NA	NA
AWC01024.1\|619499_620483_-	zinc transporter ZntB	NA	NA	NA	NA
AWC05277.1\|620761_621505_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.0e-15	30.1
AWC01025.1\|621521_622586_+	oxidoreductase	NA	NA	NA	NA
AWC01026.1\|622822_623017_+	hypothetical protein	NA	NA	NA	NA
AWC01027.1\|623129_623876_-	hypothetical protein	NA	NA	NA	NA
AWC01028.1\|624126_625506_-	aromatic amino acid transporter AroP	NA	NA	NA	NA
AWC01029.1\|625840_626320_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
AWC01030.1\|626571_627186_+	YitT family protein	NA	NA	NA	NA
AWC01031.1\|627224_628424_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
AWC01032.1\|628452_629121_-	ABC transporter permease	NA	NA	NA	NA
AWC01033.1\|629113_630127_-	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-29	39.1
AWC01034.1\|630135_630942_-	methionine-binding protein	NA	NA	NA	NA
AWC01035.1\|631162_632338_+	aspartate aminotransferase	NA	NA	NA	NA
AWC01036.1\|632382_633417_-	NADP-dependent oxidoreductase	NA	NA	NA	NA
AWC01037.1\|633505_634054_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AWC01038.1\|634108_635020_-	NmrA/HSCARG family protein	NA	NA	NA	NA
AWC01039.1\|635012_635879_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
AWC01040.1\|635969_636893_+	LysR family transcriptional regulator	NA	NA	NA	NA
AWC01041.1\|636912_637818_-	LysR family transcriptional regulator	NA	NA	NA	NA
AWC01042.1\|637956_638886_+	aromatic alcohol reductase	NA	NA	NA	NA
AWC01043.1\|638911_639118_+	DUF1471 domain-containing protein	NA	NA	NA	NA
AWC01044.1\|639168_640047_-	AraC family transcriptional regulator	NA	NA	NA	NA
AWC01045.1\|640205_640961_+	KR domain-containing protein	NA	NA	NA	NA
AWC01046.1\|640965_641559_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AWC01047.1\|641632_642346_+	oxidoreductase	NA	NA	NA	NA
AWC01048.1\|642412_642907_-	hypothetical protein	NA	NA	NA	NA
AWC01049.1\|643034_643577_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AWC01050.1\|643554_644634_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AWC01051.1\|644597_646352_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AWC01052.1\|646428_646899_-	hypothetical protein	NA	NA	NA	NA
AWC01053.1\|647981_649580_-	type VI secretion system protein TssA	NA	NA	NA	NA
AWC01054.1\|649576_653035_-	type VI secretion protein VasK	NA	NA	NA	NA
AWC01055.1\|653031_653643_-	hypothetical protein	NA	NA	NA	NA
AWC01056.1\|653641_654622_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
AWC05278.1\|654660_654771_-	ABC transporter	NA	NA	NA	NA
AWC01057.1\|655154_656252_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	7.4e-47	41.0
AWC01058.1\|656444_656966_-	hypothetical protein	NA	NA	NA	NA
AWC01059.1\|657145_657913_-	hypothetical protein	NA	NA	NA	NA
AWC01060.1\|657899_658160_-	hypothetical protein	NA	NA	NA	NA
AWC01061.1\|658156_659917_-	M23 family peptidase	NA	NA	NA	NA
AWC01062.1\|659952_660315_-	hypothetical protein	NA	NA	NA	NA
AWC01063.1\|660321_661554_-	hypothetical protein	NA	NA	NA	NA
AWC01064.1\|661546_664066_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.1e-18	32.2
AWC01065.1\|664058_666713_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	2.9e-97	33.6
AWC01066.1\|666977_667469_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AWC01067.1\|667473_669180_-	OmpA family protein	NA	NA	NA	NA
AWC01068.1\|669176_669866_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
AWC05279.1\|669862_671203_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AWC01069.1\|671215_672760_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AWC01070.1\|672802_673294_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AWC01071.1\|673934_674501_+\|protease	protease	NA	NA	NA	NA

DBSCAN-SWA_3

849398 : 894095

Cronobacter_phage(19.61%)

coat,terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC01234.1\|849398_851582_-	hypothetical protein	B5TAB2	Burkholderia_phage	3.0e-92	42.4
AWC01235.1\|851668_854146_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	3.9e-197	45.2
AWC01236.1\|854132_854528_-	hypothetical protein	F1C5F2	Cronobacter_phage	3.6e-36	55.6
AWC01237.1\|854524_854995_-	hypothetical protein	R9TPR6	Aeromonas_phage	5.6e-28	40.4
AWC05284.1\|854994_855414_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	1.6e-29	47.1
AWC01238.1\|855513_858777_-	hypothetical protein	R9TMK1	Aeromonas_phage	2.9e-232	59.7
AWC05285.1\|858848_859319_-	hypothetical protein	NA	NA	NA	NA
AWC05286.1\|859792_860152_+	hypothetical protein	A0A077K9U2	Edwardsiella_phage	1.1e-15	41.7
AWC01239.1\|860510_861062_-	KilA-N domain-containing protein	A0A1V0E5P7	Salmonella_phage	1.8e-86	91.4
AWC01240.1\|861278_861992_-	hypothetical protein	G0ZNE7	Cronobacter_phage	3.7e-63	54.2
AWC01241.1\|862060_862825_-	hypothetical protein	G0ZNE6	Cronobacter_phage	3.3e-38	43.2
AWC01242.1\|862884_863106_-	hypothetical protein	NA	NA	NA	NA
AWC01243.1\|863108_863492_-	hypothetical protein	NA	NA	NA	NA
AWC01244.1\|863488_863857_-	hypothetical protein	F1C5E3	Cronobacter_phage	8.5e-48	82.0
AWC01245.1\|863859_864222_-	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	1.9e-20	50.0
AWC01246.1\|864221_864395_-	50S ribosomal protein L13	I6R0P9	Salmonella_phage	4.1e-13	56.1
AWC01247.1\|864394_864775_-	hypothetical protein	F1C5E2	Cronobacter_phage	1.4e-29	56.1
AWC01248.1\|864777_865017_-	hypothetical protein	NA	NA	NA	NA
AWC01249.1\|865049_866105_-\|coat	phage coat protein	A0A291AXD4	Shigella_phage	2.2e-101	53.2
AWC01250.1\|866101_866563_-	hypothetical protein	B1GS72	Salmonella_phage	5.0e-29	50.3
AWC01251.1\|866562_867918_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	1.3e-130	53.3
AWC01252.1\|867995_868196_+	hypothetical protein	NA	NA	NA	NA
AWC01253.1\|868188_869190_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	1.2e-115	69.0
AWC01254.1\|869122_870586_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	1.1e-149	56.6
AWC01255.1\|870598_872071_-\|terminase	terminase	A0A1W6JNY3	Morganella_phage	9.0e-250	82.9
AWC01256.1\|872070_872673_-	hypothetical protein	G8C7P2	Escherichia_phage	4.9e-77	81.5
AWC01257.1\|873038_873224_-	rz1 lytic protein	Q8SBD8	Shigella_phage	2.1e-10	57.1
AWC01258.1\|873204_873582_-	DUF2570 domain-containing protein	M9NYX9	Enterobacteria_phage	2.1e-09	51.2
AWC01259.1\|873578_874082_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	8.5e-75	79.0
AWC01260.1\|874084_874399_-	hypothetical protein	H6WRZ3	Salmonella_phage	4.9e-44	86.1
AWC01261.1\|874467_874740_-	hypothetical protein	NA	NA	NA	NA
AWC01262.1\|875142_875832_-	antiterminator	I6PDF8	Cronobacter_phage	8.4e-57	54.9
AWC01263.1\|875828_875969_-	YlcG family protein	NA	NA	NA	NA
AWC01264.1\|875965_876607_-	HNH endonuclease	A0A2H4JH74	uncultured_Caudovirales_phage	1.1e-34	40.7
AWC01265.1\|876603_877242_-	hypothetical protein	H6WRY9	Salmonella_phage	9.8e-76	69.8
AWC05287.1\|877234_877405_-	NinE family protein	G8C7V4	Escherichia_phage	6.3e-14	69.6
AWC01266.1\|877410_878007_-	DUF1367 domain-containing protein	A0A0U2RT94	Escherichia_phage	3.6e-56	53.8
AWC01267.1\|878102_878360_-	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	6.4e-26	76.6
AWC01268.1\|878359_878647_-	hypothetical protein	NA	NA	NA	NA
AWC01269.1\|878819_879506_-	hypothetical protein	A0A2D1GLY5	Escherichia_phage	3.8e-33	50.6
AWC01270.1\|879502_880411_-	hypothetical protein	A0A140XFY9	Salmonella_phage	1.3e-145	81.0
AWC01271.1\|880407_880797_-	hypothetical protein	R9TME7	Aeromonas_phage	4.1e-16	44.3
AWC01272.1\|880793_881096_-	hypothetical protein	NA	NA	NA	NA
AWC01273.1\|881095_881872_-	replication protein	A0A193GYX1	Enterobacter_phage	1.1e-94	65.0
AWC05288.1\|881868_882597_-	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	9.3e-38	73.9
AWC01274.1\|882730_882952_-	transcriptional regulator	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
AWC01275.1\|882990_883218_-	Cro/Cl family transcriptional regulator	A0A2I6PIE5	Escherichia_phage	1.9e-18	61.2
AWC05289.1\|883286_884009_+	XRE family transcriptional regulator	E7C9R0	Salmonella_phage	1.1e-75	63.7
AWC01276.1\|884054_884375_+	hypothetical protein	NA	NA	NA	NA
AWC01277.1\|884374_885073_+	DUF1640 domain-containing protein	NA	NA	NA	NA
AWC01278.1\|885585_885780_+	hypothetical protein	NA	NA	NA	NA
AWC01279.1\|885867_886839_+	hypothetical protein	A0A077KCC0	Edwardsiella_phage	2.3e-39	77.7
AWC01280.1\|886846_887131_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	8.6e-40	79.8
AWC01281.1\|887147_887894_+	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	3.1e-65	67.7
AWC01282.1\|887890_888514_+	exonuclease	A0A0S2SY31	Pseudomonas_phage	4.0e-58	60.2
AWC05290.1\|888542_889070_+	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	8.4e-57	61.0
AWC01283.1\|889288_889561_+	hypothetical protein	Q716F1	Shigella_phage	2.8e-24	64.7
AWC01284.1\|889557_890322_+	hypothetical protein	R9VWB9	Serratia_phage	2.5e-70	56.8
AWC01285.1\|890318_890537_+	conjugal transfer protein TraR	A0A0K2FI84	Escherichia_phage	1.6e-09	58.5
AWC01286.1\|890540_890786_+	excisionase	A0A286S2A4	Klebsiella_phage	1.4e-35	92.1
AWC01287.1\|890828_892088_+	DUF3596 domain-containing protein	A0A286S1S8	Klebsiella_phage	2.3e-225	89.9
AWC01288.1\|892084_892864_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	1.1e-60	82.7
AWC01289.1\|892916_893312_+	hypothetical protein	NA	NA	NA	NA
AWC01290.1\|893351_894095_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.1e-25	30.0

DBSCAN-SWA_4

1121357 : 1128262

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC01473.1\|1121357_1122836_+	two-component system sensor histidine kinase BaeA	W8CYF6	Bacillus_phage	8.5e-30	28.3
AWC01474.1\|1122832_1123555_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
AWC01475.1\|1123873_1125235_+	U32 family peptidase	Q6DW11	Phage_TP	1.8e-207	94.8
AWC05303.1\|1125480_1126374_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
AWC01476.1\|1126614_1127388_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
AWC05304.1\|1127398_1128262_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5

DBSCAN-SWA_5

1468853 : 1483572

Morganella_phage(50.0%)

integrase,tail

attL 1463739:1463759|attR 1483800:1483820

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1463739:1463759	attL	NA	NA	NA	NA
AWC01771.1\|1468853_1471919_-\|tail	tail protein (tape measure)	B1GS57	Salmonella_phage	2.0e-94	40.5
AWC01772.1\|1471926_1472253_-	hypothetical protein	NA	NA	NA	NA
AWC01773.1\|1472606_1473080_-	hypothetical protein	NA	NA	NA	NA
AWC05319.1\|1473084_1473435_-	PerC family transcriptional regulator	NA	NA	NA	NA
AWC05320.1\|1473448_1473895_-	single-stranded DNA-binding protein	NA	NA	NA	NA
AWC01774.1\|1474234_1476997_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	2.8e-292	56.1
AWC01775.1\|1476989_1477340_-	hypothetical protein	A0A1B5FPL8	Escherichia_phage	3.4e-38	70.0
AWC01776.1\|1477349_1477976_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.6e-25	37.8
AWC01777.1\|1477972_1478182_-	hypothetical protein	NA	NA	NA	NA
AWC01778.1\|1478178_1478682_-	hypothetical protein	NA	NA	NA	NA
AWC01779.1\|1478678_1479641_-	HAD family hydrolase	A0A291AWU3	Escherichia_phage	3.8e-07	44.3
AWC01780.1\|1479637_1479817_-	DUF4222 domain-containing protein	NA	NA	NA	NA
AWC01781.1\|1479816_1480419_-	antirepressor protein	A0A1W6JPH8	Morganella_phage	1.2e-54	57.8
AWC01782.1\|1480432_1480867_-	hypothetical protein	A0A1W6JPH9	Morganella_phage	2.4e-25	55.3
AWC01783.1\|1480866_1481085_-	AlpA family phage regulatory protein	NA	NA	NA	NA
AWC01784.1\|1481215_1482223_-	hypothetical protein	NA	NA	NA	NA
AWC05321.1\|1482318_1483572_-\|integrase	site-specific integrase	A0A1W6JPG6	Morganella_phage	3.2e-147	60.4
1483800:1483820	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1549814 : 1596982

Salmonella_phage(26.53%)

coat,terminase,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC01844.1\|1549814_1551968_-	hypothetical protein	B5TAB2	Burkholderia_phage	9.6e-83	42.7
AWC01845.1\|1552044_1555107_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	94.1
AWC01846.1\|1555103_1555484_-	nitrite transporter	A0A286S2A6	Klebsiella_phage	1.5e-55	77.0
AWC01847.1\|1555493_1555976_-	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	3.8e-80	92.5
AWC01848.1\|1556156_1556621_-	hypothetical protein	A0A286S298	Klebsiella_phage	6.1e-59	68.4
AWC01849.1\|1556620_1560187_-\|tail	phage tail tape measure protein	K7PMB9	Enterobacterial_phage	4.2e-83	30.7
AWC01850.1\|1560282_1560645_-	hypothetical protein	S4TR42	Salmonella_phage	2.3e-05	72.4
AWC01851.1\|1560690_1561188_-	hypothetical protein	NA	NA	NA	NA
AWC01852.1\|1561269_1561800_-	KilA-N domain-containing protein	A0A2H4FQV0	Salmonella_phage	6.1e-63	68.4
AWC01853.1\|1561976_1562144_-	hypothetical protein	NA	NA	NA	NA
AWC01854.1\|1562311_1562794_-	hypothetical protein	NA	NA	NA	NA
AWC01855.1\|1562848_1564021_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	1.4e-22	27.0
AWC01856.1\|1564044_1564437_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
AWC01857.1\|1564433_1564985_-	hypothetical protein	G8C7Q1	Escherichia_phage	7.0e-30	41.1
AWC01858.1\|1564986_1565370_-	glutamate 5-kinase	A0A059VA70	Pseudomonas_phage	1.5e-23	49.6
AWC01859.1\|1565371_1565782_-	protein singed	A0A0H5AUF0	Pseudomonas_phage	1.6e-10	40.4
AWC01860.1\|1565785_1566070_-	hypothetical protein	NA	NA	NA	NA
AWC01861.1\|1566119_1567256_-\|coat	P22 coat - protein 5 family protein	G8C7P7	Escherichia_phage	2.6e-156	74.6
AWC01862.1\|1567343_1568108_-	hypothetical protein	G8C7P6	Escherichia_phage	3.9e-79	62.2
AWC01863.1\|1568226_1568466_-	hypothetical protein	NA	NA	NA	NA
AWC01864.1\|1568642_1569755_-	hypothetical protein	I6PD76	Cronobacter_phage	1.8e-109	53.2
AWC01865.1\|1569738_1571163_-	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	7.5e-193	71.1
AWC01866.1\|1571167_1572472_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	2.2e-146	59.8
AWC01867.1\|1572449_1573445_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	6.5e-34	42.9
AWC01868.1\|1573513_1573759_-	DUF2560 domain-containing protein	A0A286N2R1	Klebsiella_phage	4.5e-13	50.6
AWC01869.1\|1574072_1574345_-	hypothetical protein	NA	NA	NA	NA
AWC01870.1\|1574477_1574762_+	hypothetical protein	NA	NA	NA	NA
AWC01871.1\|1574852_1575008_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	3.2e-17	80.4
AWC01872.1\|1574997_1575273_-	hypothetical protein	G8C7W1	Escherichia_phage	1.6e-14	48.9
AWC01873.1\|1575280_1575910_-	endolysin	G8C7W0	Escherichia_phage	6.9e-106	90.9
AWC01874.1\|1575909_1576191_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	3.9e-37	80.6
AWC01875.1\|1576177_1576573_-	hypothetical protein	K7PHB9	Enterobacterial_phage	2.6e-63	98.5
AWC01876.1\|1576592_1576997_+	hypothetical protein	NA	NA	NA	NA
AWC01877.1\|1577261_1578083_-	antitermination protein	K7PKS8	Enterobacteria_phage	1.1e-98	67.5
AWC01878.1\|1578198_1578555_-	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	2.0e-41	64.1
AWC01879.1\|1578551_1578848_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	1.2e-36	72.9
AWC01880.1\|1578850_1579057_-	hypothetical protein	H6WRY8	Salmonella_phage	2.8e-24	74.2
AWC01881.1\|1579056_1579653_-	DUF1367 domain-containing protein	K7PKS6	Enterobacteria_phage	1.3e-90	80.1
AWC01882.1\|1579687_1579936_-	hypothetical protein	K7PHG9	Enterobacteria_phage	5.0e-28	67.9
AWC01883.1\|1580042_1580276_-	DNA damage-inducible protein I	K7PM44	Enterobacteria_phage	2.9e-25	68.8
AWC01884.1\|1581037_1581514_-	DUF551 domain-containing protein	A0A0M4RTV1	Salmonella_phage	7.7e-17	56.3
AWC01885.1\|1581510_1581690_-	hypothetical protein	NA	NA	NA	NA
AWC01886.1\|1581686_1582304_-	hypothetical protein	A6N3G8	Burkholderia_virus	3.7e-19	52.1
AWC01887.1\|1582296_1583088_-	hypothetical protein	C7BGF1	Burkholderia_phage	2.2e-64	53.3
AWC01888.1\|1583080_1583416_-	DUF977 domain-containing protein	H6WRX9	Salmonella_phage	5.8e-11	43.0
AWC01889.1\|1583423_1584173_-	DNA replication protein DnaC	H6WRX8	Salmonella_phage	1.3e-119	83.1
AWC01890.1\|1584175_1585084_-	DNA-binding protein	V5URT9	Shigella_phage	1.7e-89	54.1
AWC01891.1\|1585098_1585287_-	hypothetical protein	NA	NA	NA	NA
AWC01892.1\|1585374_1585911_-	hypothetical protein	K7PJT7	Enterobacteria_phage	3.6e-63	70.4
AWC01893.1\|1585913_1586147_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.1e-20	61.6
AWC01894.1\|1586251_1586647_+	transcriptional regulator	K7PM35	Enterobacteria_phage	3.1e-48	73.3
AWC01895.1\|1586817_1587666_+	hypothetical protein	NA	NA	NA	NA
AWC01896.1\|1587662_1588469_+	DUF3037 domain-containing protein	NA	NA	NA	NA
AWC01897.1\|1588517_1588721_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	1.4e-20	74.6
AWC01898.1\|1589207_1589399_+	DUF1482 domain-containing protein	NA	NA	NA	NA
AWC01899.1\|1589407_1589563_+	hypothetical protein	K7PGY4	Enterobacteria_phage	2.0e-14	71.2
AWC01900.1\|1589700_1592811_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	1.3e-293	60.7
AWC01901.1\|1592823_1593933_+	enterohemolysin	H6WRX0	Salmonella_phage	2.5e-183	86.2
AWC01902.1\|1593967_1594306_+	hypothetical protein	NA	NA	NA	NA
AWC01903.1\|1594298_1594910_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	4.9e-40	75.3
AWC01904.1\|1594906_1595215_+	hypothetical protein	I6PD68	Cronobacter_phage	1.2e-23	55.9
AWC05324.1\|1595222_1595462_+	DUF4060 domain-containing protein	M9P0E0	Enterobacteria_phage	3.2e-24	71.8
AWC01905.1\|1595499_1595775_+	excisionase Xis	H6WRW8	Salmonella_phage	9.2e-31	72.7
AWC01906.1\|1595752_1596982_-	DUF4102 domain-containing protein	H6WRW7	Salmonella_phage	1.3e-238	96.3

DBSCAN-SWA_7

4626752 : 4636215

Dickeya_phage(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC04626.1\|4626752_4627868_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
AWC04627.1\|4627864_4629805_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
AWC04628.1\|4629744_4629948_+	hypothetical protein	NA	NA	NA	NA
AWC04629.1\|4629881_4630103_-	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
AWC04630.1\|4630428_4630746_+\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
AWC04631.1\|4630776_4633056_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
AWC04632.1\|4633175_4633394_-	translation initiation factor IF-1	NA	NA	NA	NA
AWC04633.1\|4633747_4634449_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AWC04634.1\|4634493_4636215_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3

DBSCAN-SWA_8

4944239 : 4952855

Pseudomonas_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC04900.1\|4944239_4945724_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
AWC04901.1\|4945801_4946041_+	hypothetical protein	K7P7E2	Enterobacteria_phage	7.2e-16	51.3
AWC04902.1\|4946040_4946358_+	hypothetical protein	K7PGV5	Enterobacterial_phage	5.3e-22	51.5
AWC04903.1\|4946754_4947321_-	hydrolase	NA	NA	NA	NA
AWC04904.1\|4947588_4949376_+\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.3e-11	27.2
AWC04905.1\|4949377_4949821_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
AWC04906.1\|4949848_4950589_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
AWC04907.1\|4950623_4951145_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	3.4e-10	35.1
AWC04908.1\|4951224_4951836_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
AWC04909.1\|4951844_4952855_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	1.4e-07	24.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP028930

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 14739

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00249.1\|2646_3330_-	YecA family protein	NA	NA	NA	NA
AWC00250.1\|3326_4601_-	restriction endonuclease subunit S	NA	NA	NA	NA
AWC00251.1\|4590_6114_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	7.0e-88	38.7
AWC00252.1\|7246_7843_-	hypothetical protein	NA	NA	NA	NA
AWC00253.1\|8009_8603_-	conjugal transfer protein	NA	NA	NA	NA
AWC00254.1\|8674_9400_-	type-F conjugative transfer system pilin acetylase TraX	A0A1D6ZIU7	Xanthomonas_phage	7.1e-06	28.3
AWC00255.1\|9480_14739_-	conjugative transfer relaxase/helicase TraI	A0A1P8DII4	Virus_Rctr197k	6.8e-05	33.3

DBSCAN-SWA_2

45074 : 48677

Cronobacter_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00287.1\|45074_45896_-	DUF945 domain-containing protein	K4F5L3	Cronobacter_phage	2.6e-44	40.4
AWC00288.1\|45993_46212_+	hypothetical protein	NA	NA	NA	NA
AWC00289.1\|46729_47143_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AWC00290.1\|47143_47422_-	XRE family transcriptional regulator	O64356	Escherichia_phage	2.5e-07	39.4
AWC00291.1\|47411_47732_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	6.8e-09	39.5
AWC00292.1\|47812_48037_-	hypothetical protein	NA	NA	NA	NA
AWC00293.1\|48047_48260_-	hypothetical protein	NA	NA	NA	NA
AWC00294.1\|48320_48677_-	hypothetical protein	A0A248SL90	Klebsiella_phage	2.6e-25	58.1

DBSCAN-SWA_3

56500 : 58382

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00305.1\|56500_57043_-	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	4.3e-48	75.8
AWC00306.1\|57603_57924_+	hypothetical protein	NA	NA	NA	NA
AWC00307.1\|57818_58382_-	SAM-dependent methyltransferase	A8HNV9	Thalassomonas_phage	1.3e-18	34.1

DBSCAN-SWA_4

61519 : 78732

Macacine_betaherpesvirus(30.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00312.1\|61519_61774_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.2e-11	50.0
AWC00313.1\|62010_62436_-	antirestriction protein	NA	NA	NA	NA
AWC00314.1\|62473_62695_+	hypothetical protein	NA	NA	NA	NA
AWC00315.1\|62619_62898_-	hypothetical protein	NA	NA	NA	NA
AWC00345.1\|62956_63187_-	hypothetical protein	NA	NA	NA	NA
AWC00316.1\|63420_64905_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
AWC00317.1\|64904_65156_-	hypothetical protein	NA	NA	NA	NA
AWC00318.1\|65310_65736_+	peptidase	A0A1W6JNS2	Morganella_phage	8.3e-31	49.6
AWC00319.1\|65735_67007_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	5.6e-155	63.7
AWC00320.1\|68996_69959_-	hypothetical protein	NA	NA	NA	NA
AWC00321.1\|69958_70930_-	ParB/RepB/Spo0J family partition protein	I3WF22	Macacine_betaherpesvirus	4.1e-150	86.6
AWC00322.1\|70929_72096_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	1.4e-224	97.7
AWC00323.1\|72847_73858_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	8.8e-87	55.9
AWC00324.1\|74194_74392_-	hypothetical protein	NA	NA	NA	NA
AWC00325.1\|74574_75315_-	recombinase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
AWC00326.1\|76458_77406_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	1.8e-12	30.6
AWC00327.1\|77432_77744_-	EAL domain-containing protein	NA	NA	NA	NA
AWC00328.1\|77808_78732_+\|transposase	IS5/IS1182 family transposase	Q9MCT5	Escherichia_phage	2.1e-175	98.4

DBSCAN-SWA_5

84040 : 91530

Stx2-converting_phage(60.0%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00332.1\|84040_86044_-\|holin	high-affinity choline transporter BetT	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9
AWC00346.1\|87077_88285_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
AWC00333.1\|89194_90733_-\|transposase	IS66 family transposase ISKpn24	A0A0P0ZEB3	Stx2-converting_phage	5.1e-280	94.3
AWC00334.1\|90781_91129_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
AWC00335.1\|91125_91530_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	4.3e-69	98.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. CP028931

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2545 : 48797

Escherichia_phage(40.91%)

transposase,integrase

attL 11098:11112|attR 51065:51079

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWC00349.1\|2545_3559_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AWC00350.1\|3704_4409_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	9.9e-138	99.6
AWC00351.1\|4354_4615_-	hypothetical protein	NA	NA	NA	NA
AWC00352.1\|5160_5547_+	hypothetical protein	NA	NA	NA	NA
AWC00353.1\|5555_5747_+	plasmid stabilization protein	NA	NA	NA	NA
AWC00354.1\|6758_7514_+	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	4.5e-136	96.0
AWC00355.1\|7514_7709_+	hypothetical protein	NA	NA	NA	NA
AWC00356.1\|8192_8381_-	hypothetical protein	NA	NA	NA	NA
AWC00425.1\|8931_9249_-	C2H2-type zinc finger protein	NA	NA	NA	NA
AWC00357.1\|9274_10255_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
AWC00358.1\|10293_10467_-	ABC transporter	NA	NA	NA	NA
AWC00359.1\|10639_10921_+	cytoplasmic protein	NA	NA	NA	NA
AWC00360.1\|10974_11586_+	DUF2913 domain-containing protein	NA	NA	NA	NA
11098:11112	attL	NA	NA	NA	NA
AWC00361.1\|11734_12439_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWC00362.1\|12429_12612_+	hypothetical protein	NA	NA	NA	NA
AWC00363.1\|12575_13436_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
AWC00364.1\|13456_14218_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AWC00365.1\|14208_14388_+	hypothetical protein	NA	NA	NA	NA
AWC00366.1\|14520_17538_+\|transposase	Tn3-like element IS3000 family transposase	A0A125RQ78	Bacillus_phage	5.5e-52	24.7
AWC00367.1\|17653_17899_-	hypothetical protein	NA	NA	NA	NA
AWC00368.1\|17904_18096_+	hypothetical protein	NA	NA	NA	NA
AWC00369.1\|18577_19120_-	tunicamycin resistance protein	NA	NA	NA	NA
AWC00370.1\|19132_19993_-	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
AWC00371.1\|23139_23472_+	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
AWC00372.1\|23518_24394_-	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
AWC00373.1\|24649_25903_-\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
AWC00374.1\|25947_26928_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
AWC00426.1\|26966_27053_-	ABC transporter	NA	NA	NA	NA
AWC00375.1\|27675_28233_+	recombinase	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
AWC00427.1\|28466_29021_+	AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase	NA	NA	NA	NA
AWC00376.1\|29090_29879_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
AWC00377.1\|29938_30763_+	oxacillin-hydrolyzing class D beta-lactamase OXA-9	NA	NA	NA	NA
AWC00378.1\|31462_32323_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
AWC00379.1\|33138_33849_-	AAA family ATPase	NA	NA	NA	NA
AWC00380.1\|33922_34339_-	PIN domain nuclease	NA	NA	NA	NA
AWC00381.1\|34335_34566_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AWC00382.1\|34549_34984_+	hypothetical protein	NA	NA	NA	NA
AWC00383.1\|35127_35478_+	hypothetical protein	NA	NA	NA	NA
AWC00384.1\|35528_36272_+	hypothetical protein	NA	NA	NA	NA
AWC00385.1\|36268_37045_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.4e-53	92.9
AWC00386.1\|37102_37360_-	hypothetical protein	NA	NA	NA	NA
AWC00387.1\|38127_38994_+	RepB family plasmid replication initiator protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
AWC00388.1\|39350_39620_-	hypothetical protein	NA	NA	NA	NA
AWC00389.1\|40034_41240_+	ParA family protein	A0A077SL49	Escherichia_phage	2.4e-163	69.6
AWC00390.1\|41236_42214_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	2.6e-88	54.4
AWC00391.1\|42295_43567_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	4.9e-151	63.3
AWC00392.1\|43566_43998_-	peptidase	A0A1W6JNS2	Morganella_phage	1.6e-29	53.3
AWC00393.1\|44155_44407_+	hypothetical protein	NA	NA	NA	NA
AWC00394.1\|44406_45891_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
AWC00395.1\|45883_46153_+	hypothetical protein	NA	NA	NA	NA
AWC00396.1\|46360_47326_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	1.6e-58	42.7
AWC00397.1\|47805_48237_+	hypothetical protein	NA	NA	NA	NA
AWC00398.1\|48269_48797_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	5.7e-21	39.5
51065:51079	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP028929

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP028932

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP028930

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. CP028931

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection