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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP028340 Thauera aromatica K172 plasmid pKJK172, complete sequence 0 crisprs NA 0 0 0 0
CP028339 Thauera aromatica K172 chromosome, complete genome 3 crisprs DEDDh,WYL,DinG,csa3,RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,c2c9_V-U4 1 9 6 0

Results visualization

1. CP028339
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP028339_1 596381-596466 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP028339_2 2697325-2697444 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP028339_3 3240895-3243137 TypeI I-C
33 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP028339_4 4.1|3289297|45|CP028339|CRISPRCasFinder 3289297-3289341 45 CP028339.1 3104543-3104587 0 1.0

1. spacer 4.1|3289297|45|CP028339|CRISPRCasFinder matches to position: 3104543-3104587, mismatch: 0, identity: 1.0

ccctgcgcggcttttttcggccgcagcaggaaatgccccaacgcc	CRISPR spacer
ccctgcgcggcttttttcggccgcagcaggaaatgccccaacgcc	Protospacer
*********************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP028339_3 3.7|3241329|36|CP028339|PILER-CR,CRISPRCasFinder,CRT 3241329-3241364 36 NZ_CP033626 Klebsiella pneumoniae strain 4743 plasmid unnamed1, complete sequence 17657-17692 6 0.833
CP028339_3 3.7|3241329|36|CP028339|PILER-CR,CRISPRCasFinder,CRT 3241329-3241364 36 NZ_CP031371 Klebsiella pneumoniae strain KpvST101_OXA-48 plasmid pKpvST101_4, complete sequence 13802-13837 6 0.833
CP028339_3 3.7|3241329|36|CP028339|PILER-CR,CRISPRCasFinder,CRT 3241329-3241364 36 NZ_CP031370 Klebsiella pneumoniae strain KpvST101_OXA-48 plasmid pKpvST101_3, complete sequence 14599-14634 7 0.806
CP028339_3 3.33|3243076|30|CP028339|CRISPRCasFinder,CRT 3243076-3243105 30 NZ_CP045122 Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence 8648-8677 7 0.767
CP028339_3 3.18|3242075|34|CP028339|PILER-CR,CRISPRCasFinder,CRT 3242075-3242108 34 NZ_CP025613 Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence 704247-704280 8 0.765
CP028339_3 3.24|3242475|34|CP028339|PILER-CR,CRISPRCasFinder,CRT 3242475-3242508 34 LR606148 Rhizobium sp. Q54 genome assembly, plasmid: 5 383664-383697 8 0.765
CP028339_3 3.24|3242475|34|CP028339|PILER-CR,CRISPRCasFinder,CRT 3242475-3242508 34 LR606148 Rhizobium sp. Q54 genome assembly, plasmid: 5 446952-446985 8 0.765
CP028339_3 3.24|3242475|34|CP028339|PILER-CR,CRISPRCasFinder,CRT 3242475-3242508 34 NZ_CP042825 Rhizobium sp. WL3 plasmid unnamed2, complete sequence 665592-665625 8 0.765
CP028339_3 3.33|3243076|30|CP028339|CRISPRCasFinder,CRT 3243076-3243105 30 NC_048047 Caulobacter phage CcrBL9, complete genome 185038-185067 8 0.733
CP028339_3 3.1|3240927|35|CP028339|PILER-CR,CRISPRCasFinder,CRT 3240927-3240961 35 NZ_CP028965 Burkholderia sp. IDO3 plasmid p1, complete sequence 258165-258199 9 0.743
CP028339_3 3.2|3240994|34|CP028339|PILER-CR,CRISPRCasFinder,CRT 3240994-3241027 34 NZ_CP015733 Arthrobacter sp. U41 plasmid unnamed1, complete sequence 178491-178524 9 0.735
CP028339_3 3.18|3242075|34|CP028339|PILER-CR,CRISPRCasFinder,CRT 3242075-3242108 34 NZ_CP019037 Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence 71222-71255 9 0.735
CP028339_3 3.18|3242075|34|CP028339|PILER-CR,CRISPRCasFinder,CRT 3242075-3242108 34 NZ_CP023550 Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence 18790-18823 9 0.735
CP028339_3 3.2|3240994|34|CP028339|PILER-CR,CRISPRCasFinder,CRT 3240994-3241027 34 NZ_CP017943 Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence 236194-236227 10 0.706
CP028339_3 3.12|3241672|35|CP028339|PILER-CR,CRISPRCasFinder,CRT 3241672-3241706 35 NZ_CP010991 Pseudonocardia sp. EC080625-04 plasmid pFRP1-2, complete sequence 28654-28688 10 0.714
CP028339_3 3.12|3241672|35|CP028339|PILER-CR,CRISPRCasFinder,CRT 3241672-3241706 35 NZ_CP012186 Pseudonocardia sp. EC080619-01 plasmid pBCI1-1, complete sequence 177654-177688 10 0.714
CP028339_3 3.30|3242876|35|CP028339|PILER-CR,CRISPRCasFinder,CRT 3242876-3242910 35 MT498055 Arthrobacter phage Bumble, complete genome 27552-27586 10 0.714
CP028339_3 3.31|3242943|34|CP028339|PILER-CR,CRISPRCasFinder,CRT 3242943-3242976 34 NC_012987 Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence 88290-88323 10 0.706

1. spacer 3.7|3241329|36|CP028339|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033626 (Klebsiella pneumoniae strain 4743 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.833

cgcgacgggcagcaggttgccggcgtcgaaggcgac	CRISPR spacer
ggcgacgggcagcaggttgcccgcgtcgattgctgc	Protospacer
 ******************** *******  ** .*

2. spacer 3.7|3241329|36|CP028339|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031371 (Klebsiella pneumoniae strain KpvST101_OXA-48 plasmid pKpvST101_4, complete sequence) position: , mismatch: 6, identity: 0.833

cgcgacgggcagcaggttgccggcgtcgaaggcgac	CRISPR spacer
ggcgacgggcagcaggttgcccgcgtcgattgctgc	Protospacer
 ******************** *******  ** .*

3. spacer 3.7|3241329|36|CP028339|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031370 (Klebsiella pneumoniae strain KpvST101_OXA-48 plasmid pKpvST101_3, complete sequence) position: , mismatch: 7, identity: 0.806

cgcgacgggcagcaggttgccggcgtcgaaggcgac	CRISPR spacer
cgcgactggcagcaggttgcccgcgtcaattgctgc	Protospacer
****** ************** *****.*  ** .*

4. spacer 3.33|3243076|30|CP028339|CRISPRCasFinder,CRT matches to NZ_CP045122 (Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gagcccaccgacccgcagtaccagcgcact	CRISPR spacer
taccccgccgacccgcagtaccagcagccg	Protospacer
 * ***.******************.  * 

5. spacer 3.18|3242075|34|CP028339|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

ggcgagctgggcgcggacatgccggccaccgagg	CRISPR spacer
gtgaagctgggcgctgatatgccggccaccggcc	Protospacer
*  .********** **.*************.  

6. spacer 3.24|3242475|34|CP028339|PILER-CR,CRISPRCasFinder,CRT matches to LR606148 (Rhizobium sp. Q54 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.765

ttgac--cgcgacgttgcccacgctggcgctcgatt	CRISPR spacer
--gacgagacgacgttgcccacgctcgcgcccggat	Protospacer
  ***   .**************** ****.**. *

7. spacer 3.24|3242475|34|CP028339|PILER-CR,CRISPRCasFinder,CRT matches to LR606148 (Rhizobium sp. Q54 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.765

ttgac--cgcgacgttgcccacgctggcgctcgatt	CRISPR spacer
--gacgagacgacgttgcccacgctcgcgcccggat	Protospacer
  ***   .**************** ****.**. *

8. spacer 3.24|3242475|34|CP028339|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042825 (Rhizobium sp. WL3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgac--cgcgacgttgcccacgctggcgctcgatt	CRISPR spacer
--gacgagacgacgttgcccacgctcgcgcccggat	Protospacer
  ***   .**************** ****.**. *

9. spacer 3.33|3243076|30|CP028339|CRISPRCasFinder,CRT matches to NC_048047 (Caulobacter phage CcrBL9, complete genome) position: , mismatch: 8, identity: 0.733

gagcccaccgacccgcagtaccagcgcact	CRISPR spacer
tgcgccaccgactcgtagtaccagcgcatc	Protospacer
 .  ********.**.************..

10. spacer 3.1|3240927|35|CP028339|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028965 (Burkholderia sp. IDO3 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.743

gcgtactgctcgatgcgcttcacgcgggcgccctc	CRISPR spacer
tcgccctgctggatgcgcttcacgccggcgatgac	Protospacer
 **. ***** ************** **** .  *

11. spacer 3.2|3240994|34|CP028339|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015733 (Arthrobacter sp. U41 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

cctcttgctccgacagcgtaacgtccgggaatgc	CRISPR spacer
tcaggtgctccgtcagcgcaacgtccgggcgtcc	Protospacer
.*   ******* *****.********** .* *

12. spacer 3.18|3242075|34|CP028339|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019037 (Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

ggcgagctgggcgcggacatgccg--gccaccgagg	CRISPR spacer
ggctcgctgggcgcggacatgccgatgccgttct--	Protospacer
***  *******************  ***...    

13. spacer 3.18|3242075|34|CP028339|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023550 (Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

ggcgagctgggcgcggacatgccggccaccgagg	CRISPR spacer
cggctgatggccgcgaacatgccggccaccgcga	Protospacer
 *   * *** ****.*************** *.

14. spacer 3.2|3240994|34|CP028339|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017943 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706

cctcttgctccgacagcgtaacgtccgggaatgc	CRISPR spacer
tccgatgctccgacagcgtaacgcccagggactg	Protospacer
.*.  ******************.**.**.*.  

15. spacer 3.12|3241672|35|CP028339|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010991 (Pseudonocardia sp. EC080625-04 plasmid pFRP1-2, complete sequence) position: , mismatch: 10, identity: 0.714

gccggcggcgatcggttcgacccggtcgagctcgg	CRISPR spacer
tacttcgccgatcggatcgacccggtcgaggactc	Protospacer
  *  ** ******* **************  *  

16. spacer 3.12|3241672|35|CP028339|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012186 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-1, complete sequence) position: , mismatch: 10, identity: 0.714

gccggcggcgatcggttcgacccggtcgagctcgg	CRISPR spacer
tacttcgccgatcggatcgacccggtcgaggactc	Protospacer
  *  ** ******* **************  *  

17. spacer 3.30|3242876|35|CP028339|PILER-CR,CRISPRCasFinder,CRT matches to MT498055 (Arthrobacter phage Bumble, complete genome) position: , mismatch: 10, identity: 0.714

gttggtcacctcgatcaggtgggcgatgatgtcga	CRISPR spacer
gcgctcctcctcgatcaggagggcgatgatctcct	Protospacer
*.   .* *********** ********** **  

18. spacer 3.31|3242943|34|CP028339|PILER-CR,CRISPRCasFinder,CRT matches to NC_012987 (Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence) position: , mismatch: 10, identity: 0.706

gtacatcagaggcagcgatgcgctgatgtcgtac	CRISPR spacer
cggcatcaagggcagcgatgcgctgatcgagtgt	Protospacer
  .*****..*****************   **..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 388070 : 395827 11 Shigella_phage(33.33%) transposase NA
DBSCAN-SWA_2 1288499 : 1299436 11 uncultured_Mediterranean_phage(28.57%) tRNA NA
DBSCAN-SWA_3 2249381 : 2277296 32 Burkholderia_virus(27.78%) tail,terminase NA
DBSCAN-SWA_4 2283230 : 2295546 15 Pseudomonas_phage(33.33%) NA NA
DBSCAN-SWA_5 2512023 : 2521865 10 Escherichia_phage(33.33%) tRNA NA
DBSCAN-SWA_6 3074223 : 3080616 7 Bacillus_phage(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage